Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82122.t1 | XP_003612572.1 | 91.4 | 302 | 23 | 1 | 1 | 299 | 1 | 302 | 1.60E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82122.t1 | O80450 | 54.5 | 275 | 112 | 4 | 26 | 299 | 26 | 288 | 7.6e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82122.t1 | G7K6R0 | 91.4 | 302 | 23 | 1 | 1 | 299 | 1 | 302 | 1.1e-106 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82122.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82122.t1 | MTR_5g026540 | 96.358 | 302 | 8 | 1 | 1 | 299 | 1 | 302 | 0.0 | 593 |
| MS.gene82122.t1 | MTR_4g015680 | 50.397 | 252 | 109 | 5 | 44 | 294 | 40 | 276 | 2.79e-57 | 186 |
| MS.gene82122.t1 | MTR_7g068770 | 46.863 | 271 | 129 | 5 | 28 | 297 | 35 | 291 | 5.44e-51 | 170 |
| MS.gene82122.t1 | MTR_3g085960 | 50.820 | 61 | 30 | 0 | 46 | 106 | 77 | 137 | 7.30e-14 | 71.6 |
| MS.gene82122.t1 | MTR_2g026725 | 30.508 | 118 | 71 | 3 | 30 | 138 | 241 | 356 | 1.24e-12 | 68.2 |
| MS.gene82122.t1 | MTR_1g098870 | 29.323 | 133 | 82 | 3 | 10 | 132 | 332 | 462 | 1.53e-12 | 68.2 |
| MS.gene82122.t1 | MTR_1g098900 | 33.696 | 92 | 56 | 3 | 46 | 133 | 455 | 545 | 4.60e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82122.t1 | AT2G38250 | 43.321 | 277 | 140 | 5 | 26 | 299 | 26 | 288 | 5.82e-50 | 167 |
| MS.gene82122.t1 | AT5G01380 | 39.446 | 289 | 154 | 7 | 26 | 299 | 33 | 315 | 6.80e-41 | 144 |
| MS.gene82122.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 2.55e-15 | 73.9 |
| MS.gene82122.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 4.23e-15 | 74.3 |
| MS.gene82122.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 4.23e-15 | 74.3 |
| MS.gene82122.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 1.24e-14 | 73.9 |
| MS.gene82122.t1 | AT3G25990 | 39.785 | 93 | 48 | 2 | 46 | 132 | 55 | 145 | 2.13e-14 | 73.2 |
| MS.gene82122.t1 | AT1G76890 | 34.711 | 121 | 74 | 3 | 19 | 135 | 371 | 490 | 4.54e-14 | 72.8 |
| MS.gene82122.t1 | AT1G76880 | 36.264 | 91 | 53 | 3 | 46 | 132 | 409 | 498 | 4.84e-11 | 63.5 |
Find 75 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATGAGTTTGTTTAAA+AGG | 0.131414 | 5.2:+17322241 | None:intergenic |
| GGGCATTGCTTTCCATGTTC+TGG | 0.245787 | 5.2:+17322771 | None:intergenic |
| CGATGCTCTGGCAGCTCGCC+TGG | 0.275887 | 5.2:-17324386 | MS.gene82122:CDS |
| CACTTGCATTTACACTGTTC+AGG | 0.319358 | 5.2:+17324139 | None:intergenic |
| CCAAAGCGTCTTGTTCCTCT+TGG | 0.348352 | 5.2:+17324207 | None:intergenic |
| AGATGAGGGAGAGAGGGTAT+AGG | 0.349714 | 5.2:-17324168 | MS.gene82122:CDS |
| CGAGAAGCAATACACGTAAA+AGG | 0.365476 | 5.2:-17322557 | MS.gene82122:CDS |
| GGAGAGATTAATGATTGAAC+AGG | 0.371512 | 5.2:-17322340 | MS.gene82122:CDS |
| CAAGAGGAACAAGACGCTTT+GGG | 0.378761 | 5.2:-17324206 | MS.gene82122:CDS |
| GAGACTGAGGGAGGAGAATA+GGG | 0.379742 | 5.2:-17322292 | MS.gene82122:CDS |
| GGAGACTGAGGGAGGAGAAT+AGG | 0.381910 | 5.2:-17322293 | MS.gene82122:CDS |
| CCAAGAGGAACAAGACGCTT+TGG | 0.398905 | 5.2:-17324207 | MS.gene82122:CDS |
| GAATCTTGTTAATCGCTATA+AGG | 0.403188 | 5.2:-17324113 | MS.gene82122:intron |
| TTGCATGCTATGTGCTCTTT+CGG | 0.404296 | 5.2:+17322719 | None:intergenic |
| ATGAATGAGTTTGTTTAAAA+GGG | 0.419814 | 5.2:+17322242 | None:intergenic |
| CCGAAAATGTACGGCGGCGG+TGG | 0.422205 | 5.2:-17324415 | None:intergenic |
| CAAGAGAGTTCATAGCGATA+AGG | 0.454890 | 5.2:-17324258 | MS.gene82122:CDS |
| GAACAAGACGCTTTGGGAAG+TGG | 0.456312 | 5.2:-17324200 | MS.gene82122:CDS |
| AAGAGAGTTCATAGCGATAA+GGG | 0.460403 | 5.2:-17324257 | MS.gene82122:CDS |
| AGTTCGAAGATGAGGGAGAG+AGG | 0.463651 | 5.2:-17324175 | MS.gene82122:CDS |
| ACAGGAATGGCGGCAGTCAA+TGG | 0.476521 | 5.2:-17322376 | MS.gene82122:CDS |
| TGACTCCACTGCGGCTGAGC+TGG | 0.479689 | 5.2:+17324289 | None:intergenic |
| AAAATGTACGGCGGCGGTGG+AGG | 0.483528 | 5.2:-17324412 | MS.gene82122:CDS |
| AGGAGAATAGGGCAGAGAGA+AGG | 0.485185 | 5.2:-17322281 | MS.gene82122:CDS |
| GGAGAATAGGGCAGAGAGAA+GGG | 0.485668 | 5.2:-17322280 | MS.gene82122:CDS |
| AGTGGTGAGTTCGAAGATGA+GGG | 0.492563 | 5.2:-17324182 | MS.gene82122:CDS |
| GATGCAGTGGAGGGAGGTGA+TGG | 0.493197 | 5.2:-17322430 | MS.gene82122:CDS |
| TGAGGGAGAGAGGGTATAGG+AGG | 0.495279 | 5.2:-17324165 | MS.gene82122:CDS |
| TCAGCCGCAGTGGAGTCAGC+AGG | 0.495729 | 5.2:-17324284 | MS.gene82122:CDS |
| GATGCTCTGGCAGCTCGCCT+GGG | 0.496371 | 5.2:-17324385 | MS.gene82122:CDS |
| AAGTGGTGAGTTCGAAGATG+AGG | 0.496550 | 5.2:-17324183 | MS.gene82122:CDS |
| TTGCAACAGAGAAGTCTTCA+AGG | 0.502672 | 5.2:-17322521 | MS.gene82122:CDS |
| GGAGACATCAACGACGATGT+TGG | 0.506153 | 5.2:+17324337 | None:intergenic |
| CGGTGGAGGAGACGATGCTC+TGG | 0.506430 | 5.2:-17324398 | MS.gene82122:CDS |
| GTCGTTGATGTCTCCGACGG+CGG | 0.510283 | 5.2:-17324329 | MS.gene82122:CDS |
| AACAGTTGTTTGAACAGGAA+TGG | 0.513571 | 5.2:-17322389 | MS.gene82122:CDS |
| GATTAATGATTGAACAGGAA+TGG | 0.519107 | 5.2:-17322335 | MS.gene82122:CDS |
| CGATAAGGGCGGAGCTTGAG+AGG | 0.528329 | 5.2:-17324243 | MS.gene82122:CDS |
| GGAGTGAAGAAAATAAGAAG+TGG | 0.531731 | 5.2:-17322651 | MS.gene82122:CDS |
| GTCTCCGACGGCGGTGAGAG+AGG | 0.538271 | 5.2:-17324320 | MS.gene82122:CDS |
| GGAGGGAAAGAGAAGAGCAT+AGG | 0.544277 | 5.2:-17322314 | MS.gene82122:CDS |
| TAATGATTGAACAGGAATGG+AGG | 0.545461 | 5.2:-17322332 | MS.gene82122:CDS |
| TTACGTGTATTGCTTCTCGC+AGG | 0.548915 | 5.2:+17322561 | None:intergenic |
| AATACACGTAAAAGGAAAGC+TGG | 0.551659 | 5.2:-17322549 | MS.gene82122:CDS |
| GTGACTGTGGTACTATTCCC+AGG | 0.552521 | 5.2:+17324368 | None:intergenic |
| GAGGGAGGTGATGGAAAAGC+GGG | 0.555074 | 5.2:-17322421 | MS.gene82122:CDS |
| GTTCGAAGATGAGGGAGAGA+GGG | 0.555989 | 5.2:-17324174 | MS.gene82122:CDS |
| AATGGAGATGCAGTGGAGGG+AGG | 0.556920 | 5.2:-17322436 | MS.gene82122:CDS |
| GGATACCAGCTCAGCCGCAG+TGG | 0.570476 | 5.2:-17324294 | MS.gene82122:CDS |
| AATGATTGAACAGGAATGGA+GGG | 0.570661 | 5.2:-17322331 | MS.gene82122:CDS |
| CTGAACAGTGTAAATGCAAG+TGG | 0.574316 | 5.2:-17324138 | MS.gene82122:CDS |
| AGTTGAAGATGACAGTGAAG+AGG | 0.575058 | 5.2:-17322589 | MS.gene82122:CDS |
| CTGAGAATTCGTCAGAGGAT+CGG | 0.577596 | 5.2:+17322625 | None:intergenic |
| CGAATTCTCAGAAGATGATG+AGG | 0.577887 | 5.2:-17322613 | MS.gene82122:CDS |
| CTCTCCTCTCTCACCGCCGT+CGG | 0.578959 | 5.2:+17324316 | None:intergenic |
| GGAGGGAGGTGATGGAAAAG+CGG | 0.585792 | 5.2:-17322422 | MS.gene82122:CDS |
| GAGACATCTGATCCAGAACA+TGG | 0.596082 | 5.2:-17322783 | MS.gene82122:CDS |
| GAGAAGAGCATAGGAGACTG+AGG | 0.597643 | 5.2:-17322305 | MS.gene82122:CDS |
| TGACAGAAACCGAAAATGTA+CGG | 0.599687 | 5.2:-17324424 | None:intergenic |
| AGTCAATGGAAAAGCTTGAG+AGG | 0.603425 | 5.2:-17322362 | MS.gene82122:CDS |
| GATAAGGGCGGAGCTTGAGA+GGG | 0.608839 | 5.2:-17324242 | MS.gene82122:CDS |
| GTCAATGGAAAAGCTTGAGA+GGG | 0.615909 | 5.2:-17322361 | MS.gene82122:CDS |
| TGCAACAGAGAAGTCTTCAA+GGG | 0.632169 | 5.2:-17322520 | MS.gene82122:CDS |
| TAATATTCAAGAAATGCTCA+AGG | 0.634081 | 5.2:-17322481 | MS.gene82122:CDS |
| ATCGTCGTTGATGTCTCCGA+CGG | 0.642280 | 5.2:-17324332 | MS.gene82122:CDS |
| AGAAGAGCATAGGAGACTGA+GGG | 0.643488 | 5.2:-17322304 | MS.gene82122:CDS |
| ATCTTCTGAGAATTCGTCAG+AGG | 0.649927 | 5.2:+17322620 | None:intergenic |
| AGAGCATAGGAGACTGAGGG+AGG | 0.658874 | 5.2:-17322301 | MS.gene82122:CDS |
| AGTTGTTTGAACAGGAATGG+CGG | 0.675425 | 5.2:-17322386 | MS.gene82122:CDS |
| AAACCGAAAATGTACGGCGG+CGG | 0.675954 | 5.2:-17324418 | None:intergenic |
| CGACGGCGGTGAGAGAGGAG+AGG | 0.677729 | 5.2:-17324315 | MS.gene82122:CDS |
| AGAGTTCATAGCGATAAGGG+CGG | 0.691633 | 5.2:-17324254 | MS.gene82122:CDS |
| GTTGGAATCAGAAGTGACTG+TGG | 0.763707 | 5.2:+17324355 | None:intergenic |
| GTCTCCTGCTGACTCCACTG+CGG | 0.773488 | 5.2:+17324280 | None:intergenic |
| CAGAAACCGAAAATGTACGG+CGG | 0.798682 | 5.2:-17324421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTTTTTTTTTTTGTT+TGG | + | chr5.2:17323048-17323067 | None:intergenic | 10.0% |
| !! | CAAAAAATGATATAATTGTA+AGG | + | chr5.2:17322894-17322913 | None:intergenic | 15.0% |
| !! | AAAAGCTATATCTTGAATAT+TGG | - | chr5.2:17323779-17323798 | MS.gene82122:intron | 20.0% |
| !! | AAAGCTATATCTTGAATATT+GGG | - | chr5.2:17323780-17323799 | MS.gene82122:intron | 20.0% |
| !! | AATTCAAAAACTAATGCTTT+CGG | + | chr5.2:17323078-17323097 | None:intergenic | 20.0% |
| !! | AATTCAAAAATTTAGTCTCT+TGG | - | chr5.2:17322957-17322976 | MS.gene82122:intron | 20.0% |
| !! | ATGGTAATAAAAACAAATGT+TGG | + | chr5.2:17323106-17323125 | None:intergenic | 20.0% |
| !! | TGCATTGTTATAATTTCATT+TGG | - | chr5.2:17322796-17322815 | MS.gene82122:intron | 20.0% |
| !!! | AAACAATTTTTGAATTTGCA+GGG | - | chr5.2:17323015-17323034 | MS.gene82122:intron | 20.0% |
| !!! | ACTAAATTTTTGAATTTGCA+GGG | + | chr5.2:17322953-17322972 | None:intergenic | 20.0% |
| !!! | ATGAATGAGTTTGTTTAAAA+GGG | + | chr5.2:17324400-17324419 | None:intergenic | 20.0% |
| !!! | CATTTGTTTTTATTACCATT+TGG | - | chr5.2:17323107-17323126 | MS.gene82122:intron | 20.0% |
| !!! | TATCTTTCTCTTTATGTTTT+GGG | - | chr5.2:17322549-17322568 | MS.gene82122:CDS | 20.0% |
| ! | AAGCTATATCTTGAATATTG+GGG | - | chr5.2:17323781-17323800 | MS.gene82122:intron | 25.0% |
| ! | AGTAAATTTAATCATGTCGT+TGG | - | chr5.2:17323698-17323717 | MS.gene82122:intron | 25.0% |
| ! | ATATATGAAATGCTGTGATT+TGG | - | chr5.2:17323175-17323194 | MS.gene82122:intron | 25.0% |
| ! | CATGCAATTCTTCAAAAAAT+GGG | + | chr5.2:17323891-17323910 | None:intergenic | 25.0% |
| ! | GTAAATTTAATCATGTCGTT+GGG | - | chr5.2:17323699-17323718 | MS.gene82122:intron | 25.0% |
| ! | GTAGTGTTTAATAATGTAGT+TGG | - | chr5.2:17322629-17322648 | MS.gene82122:CDS | 25.0% |
| ! | TAATATTCAAGAAATGCTCA+AGG | - | chr5.2:17324158-17324177 | MS.gene82122:CDS | 25.0% |
| ! | TGAGGACTAAAAAGTTATAT+TGG | + | chr5.2:17323466-17323485 | None:intergenic | 25.0% |
| ! | TTTCCAACACCAATTAAAAA+TGG | - | chr5.2:17324185-17324204 | MS.gene82122:CDS | 25.0% |
| !! | CATGAATGAGTTTGTTTAAA+AGG | + | chr5.2:17324401-17324420 | None:intergenic | 25.0% |
| !! | GAAACAATTTTTGAATTTGC+AGG | - | chr5.2:17323014-17323033 | MS.gene82122:intron | 25.0% |
| !! | GACTAAATTTTTGAATTTGC+AGG | + | chr5.2:17322954-17322973 | None:intergenic | 25.0% |
| !! | GTATCTTTCTCTTTATGTTT+TGG | - | chr5.2:17322548-17322567 | MS.gene82122:CDS | 25.0% |
| !!! | AACATGTATGATTTGGTATT+TGG | - | chr5.2:17323667-17323686 | MS.gene82122:intron | 25.0% |
| !!! | ATATAACTTTTTAGTCCTCA+AGG | - | chr5.2:17323466-17323485 | MS.gene82122:intron | 25.0% |
| !!! | TCTTTATGTTTTGGGTTTTT+AGG | - | chr5.2:17322557-17322576 | MS.gene82122:CDS | 25.0% |
| AACATTGAAGGAGTTTGAAA+AGG | - | chr5.2:17323512-17323531 | MS.gene82122:intron | 30.0% | |
| AACCTCTAACATGTATGATT+TGG | - | chr5.2:17323660-17323679 | MS.gene82122:intron | 30.0% | |
| AATTAAAAATGGAGATGCAG+TGG | - | chr5.2:17324196-17324215 | MS.gene82122:CDS | 30.0% | |
| ATAAGTATGGACCATAATGT+TGG | - | chr5.2:17323141-17323160 | MS.gene82122:intron | 30.0% | |
| CGTTCAACTCAAACAAAAAA+AGG | - | chr5.2:17323967-17323986 | MS.gene82122:intron | 30.0% | |
| GAATCTTGTTAATCGCTATA+AGG | - | chr5.2:17322526-17322545 | MS.gene82122:CDS | 30.0% | |
| GATTAATGATTGAACAGGAA+TGG | - | chr5.2:17324304-17324323 | MS.gene82122:CDS | 30.0% | |
| GCATGCAATTCTTCAAAAAA+TGG | + | chr5.2:17323892-17323911 | None:intergenic | 30.0% | |
| TAAGTATGGACCATAATGTT+GGG | - | chr5.2:17323142-17323161 | MS.gene82122:intron | 30.0% | |
| TACCAAATCATACATGTTAG+AGG | + | chr5.2:17323665-17323684 | None:intergenic | 30.0% | |
| TGAAAAACAGTTGTTTGAAC+AGG | - | chr5.2:17324245-17324264 | MS.gene82122:CDS | 30.0% | |
| TTATTTATCCACAGTCCAAA+TGG | + | chr5.2:17323125-17323144 | None:intergenic | 30.0% | |
| ! | TTTTATTACCATTTGGACTG+TGG | - | chr5.2:17323114-17323133 | MS.gene82122:intron | 30.0% |
| !! | ACTGCATCTCCATTTTTAAT+TGG | + | chr5.2:17324197-17324216 | None:intergenic | 30.0% |
| !! | TCTCCATTTTTAATTGGTGT+TGG | + | chr5.2:17324191-17324210 | None:intergenic | 30.0% |
| AAAGAAAACTGATGCACAGT+TGG | + | chr5.2:17323742-17323761 | None:intergenic | 35.0% | |
| AAATGAGTTGCAGAAAGACA+TGG | - | chr5.2:17322654-17322673 | MS.gene82122:CDS | 35.0% | |
| AACAGTTGTTTGAACAGGAA+TGG | - | chr5.2:17324250-17324269 | MS.gene82122:CDS | 35.0% | |
| AAGAGAGTTCATAGCGATAA+GGG | - | chr5.2:17322382-17322401 | MS.gene82122:CDS | 35.0% | |
| AATACACGTAAAAGGAAAGC+TGG | - | chr5.2:17324090-17324109 | MS.gene82122:intron | 35.0% | |
| AATGATTGAACAGGAATGGA+GGG | - | chr5.2:17324308-17324327 | MS.gene82122:CDS | 35.0% | |
| ATAATGAGGTCCAGTTCAAA+TGG | + | chr5.2:17323232-17323251 | None:intergenic | 35.0% | |
| ATGAACTCAACCCAACATTA+TGG | + | chr5.2:17323155-17323174 | None:intergenic | 35.0% | |
| ATTGAAGGAGTTTGAAAAGG+AGG | - | chr5.2:17323515-17323534 | MS.gene82122:intron | 35.0% | |
| CTCTAAGTCCTTAACGTATT+GGG | + | chr5.2:17322995-17323014 | None:intergenic | 35.0% | |
| GGACTGTGGATAAATAAGTA+TGG | - | chr5.2:17323128-17323147 | MS.gene82122:intron | 35.0% | |
| GGAGAGATTAATGATTGAAC+AGG | - | chr5.2:17324299-17324318 | MS.gene82122:CDS | 35.0% | |
| GGAGTGAAGAAAATAAGAAG+TGG | - | chr5.2:17323988-17324007 | MS.gene82122:intron | 35.0% | |
| TAATGATTGAACAGGAATGG+AGG | - | chr5.2:17324307-17324326 | MS.gene82122:CDS | 35.0% | |
| TCAAATGCTAACTTGAGCTT+CGG | - | chr5.2:17323407-17323426 | MS.gene82122:intron | 35.0% | |
| TCTCTAAGTCCTTAACGTAT+TGG | + | chr5.2:17322996-17323015 | None:intergenic | 35.0% | |
| ! | AGGTTTTCTGCATATGCAAA+GGG | + | chr5.2:17323645-17323664 | None:intergenic | 35.0% |
| ! | CACATGATGATGTTTATGCA+GGG | - | chr5.2:17323829-17323848 | MS.gene82122:intron | 35.0% |
| ! | TCACATGATGATGTTTATGC+AGG | - | chr5.2:17323828-17323847 | MS.gene82122:intron | 35.0% |
| !! | ATGAAATGCTGTGATTTGGT+TGG | - | chr5.2:17323179-17323198 | MS.gene82122:intron | 35.0% |
| AAAAATGGAGATGCAGTGGA+GGG | - | chr5.2:17324200-17324219 | MS.gene82122:CDS | 40.0% | |
| ACCAATTGAACTACACCTTG+AGG | + | chr5.2:17323484-17323503 | None:intergenic | 40.0% | |
| AGGTTTCTTGATGGGAAAGT+TGG | + | chr5.2:17323322-17323341 | None:intergenic | 40.0% | |
| AGTCAATGGAAAAGCTTGAG+AGG | - | chr5.2:17324277-17324296 | MS.gene82122:CDS | 40.0% | |
| AGTTGAAGATGACAGTGAAG+AGG | - | chr5.2:17324050-17324069 | MS.gene82122:intron | 40.0% | |
| AGTTGTTTGAACAGGAATGG+CGG | - | chr5.2:17324253-17324272 | MS.gene82122:CDS | 40.0% | |
| ATACATGGCCCAATACGTTA+AGG | - | chr5.2:17322984-17323003 | MS.gene82122:intron | 40.0% | |
| CAAGAGAGTTCATAGCGATA+AGG | - | chr5.2:17322381-17322400 | MS.gene82122:CDS | 40.0% | |
| CACTTGCATTTACACTGTTC+AGG | + | chr5.2:17322503-17322522 | None:intergenic | 40.0% | |
| CGAATTCTCAGAAGATGATG+AGG | - | chr5.2:17324026-17324045 | MS.gene82122:intron | 40.0% | |
| CGAGAAGCAATACACGTAAA+AGG | - | chr5.2:17324082-17324101 | MS.gene82122:intron | 40.0% | |
| CTGAACAGTGTAAATGCAAG+TGG | - | chr5.2:17322501-17322520 | MS.gene82122:CDS | 40.0% | |
| CTTCTGAATCGCTCTAGTTA+GGG | + | chr5.2:17323266-17323285 | None:intergenic | 40.0% | |
| GCTTGACAAGGTTTCTTGAT+GGG | + | chr5.2:17323330-17323349 | None:intergenic | 40.0% | |
| GTCAATGGAAAAGCTTGAGA+GGG | - | chr5.2:17324278-17324297 | MS.gene82122:CDS | 40.0% | |
| TAAAAATGGAGATGCAGTGG+AGG | - | chr5.2:17324199-17324218 | MS.gene82122:CDS | 40.0% | |
| TCCTCAAGGTGTAGTTCAAT+TGG | - | chr5.2:17323480-17323499 | MS.gene82122:intron | 40.0% | |
| TGCAACAGAGAAGTCTTCAA+GGG | - | chr5.2:17324119-17324138 | MS.gene82122:CDS | 40.0% | |
| TGGTTGAGCTGAAACATTGA+AGG | - | chr5.2:17323500-17323519 | MS.gene82122:intron | 40.0% | |
| TTCTGAATCGCTCTAGTTAG+GGG | + | chr5.2:17323265-17323284 | None:intergenic | 40.0% | |
| TTGCAACAGAGAAGTCTTCA+AGG | - | chr5.2:17324118-17324137 | MS.gene82122:CDS | 40.0% | |
| TTGCATGCTATGTGCTCTTT+CGG | + | chr5.2:17323923-17323942 | None:intergenic | 40.0% | |
| ! | ATCTTCTGAGAATTCGTCAG+AGG | + | chr5.2:17324022-17324041 | None:intergenic | 40.0% |
| ! | GAGGTTTTCTGCATATGCAA+AGG | + | chr5.2:17323646-17323665 | None:intergenic | 40.0% |
| ! | GGTTTTCTGCATATGCAAAG+GGG | + | chr5.2:17323644-17323663 | None:intergenic | 40.0% |
| ! | TCTTGATGGGAAAGTTGGTT+GGG | + | chr5.2:17323317-17323336 | None:intergenic | 40.0% |
| ! | TTCTTGATGGGAAAGTTGGT+TGG | + | chr5.2:17323318-17323337 | None:intergenic | 40.0% |
| !! | AAATGCTGTGATTTGGTTGG+AGG | - | chr5.2:17323182-17323201 | MS.gene82122:intron | 40.0% |
| !! | AATGCTGTGATTTGGTTGGA+GGG | - | chr5.2:17323183-17323202 | MS.gene82122:intron | 40.0% |
| !! | TAGTCTCTTGGTGTCATACA+TGG | - | chr5.2:17322969-17322988 | MS.gene82122:intron | 40.0% |
| AAGAGTGATCTCGCTTGACA+AGG | + | chr5.2:17323342-17323361 | None:intergenic | 45.0% | |
| AAGTGGTGAGTTCGAAGATG+AGG | - | chr5.2:17322456-17322475 | MS.gene82122:CDS | 45.0% | |
| AGAGTTCATAGCGATAAGGG+CGG | - | chr5.2:17322385-17322404 | MS.gene82122:CDS | 45.0% | |
| AGTGGTGAGTTCGAAGATGA+GGG | - | chr5.2:17322457-17322476 | MS.gene82122:CDS | 45.0% | |
| CAAGAGGAACAAGACGCTTT+GGG | - | chr5.2:17322433-17322452 | MS.gene82122:CDS | 45.0% | |
| CACATAATGGTGCAGTGATG+TGG | + | chr5.2:17323293-17323312 | None:intergenic | 45.0% | |
| CGCTTGACAAGGTTTCTTGA+TGG | + | chr5.2:17323331-17323350 | None:intergenic | 45.0% | |
| CTGAGAATTCGTCAGAGGAT+CGG | + | chr5.2:17324017-17324036 | None:intergenic | 45.0% | |
| GAGACATCTGATCCAGAACA+TGG | - | chr5.2:17323856-17323875 | MS.gene82122:intron | 45.0% | |
| GAGGTCAATATGCACTAGTG+AGG | + | chr5.2:17323622-17323641 | None:intergenic | 45.0% | |
| GCTTCTGAATCGCTCTAGTT+AGG | + | chr5.2:17323267-17323286 | None:intergenic | 45.0% | |
| GGAGTTTGAAAAGGAGGTCT+AGG | - | chr5.2:17323521-17323540 | MS.gene82122:intron | 45.0% | |
| GTTGGAATCAGAAGTGACTG+TGG | + | chr5.2:17322287-17322306 | None:intergenic | 45.0% | |
| TTACGTGTATTGCTTCTCGC+AGG | + | chr5.2:17324081-17324100 | None:intergenic | 45.0% | |
| TTTCTGCATATGCAAAGGGG+AGG | + | chr5.2:17323641-17323660 | None:intergenic | 45.0% | |
| ! | AAGTTGGTTGGGGCACATAA+TGG | + | chr5.2:17323306-17323325 | None:intergenic | 45.0% |
| ! | AGAAGAGCATAGGAGACTGA+GGG | - | chr5.2:17324335-17324354 | MS.gene82122:CDS | 45.0% |
| ! | CTTGATGGGAAAGTTGGTTG+GGG | + | chr5.2:17323316-17323335 | None:intergenic | 45.0% |
| ! | GGGATTTTACTGCTTCCAAG+AGG | - | chr5.2:17322417-17322436 | MS.gene82122:CDS | 45.0% |
| ! | TGGAGGGTGTGTTATGGATT+GGG | - | chr5.2:17323199-17323218 | MS.gene82122:intron | 45.0% |
| ! | TTGGAGGGTGTGTTATGGAT+TGG | - | chr5.2:17323198-17323217 | MS.gene82122:intron | 45.0% |
| ! | TTTGGTTGGAGGGTGTGTTA+TGG | - | chr5.2:17323193-17323212 | MS.gene82122:intron | 45.0% |
| AGCTCCTTCAACCTGCCAAA+CGG | - | chr5.2:17323596-17323615 | MS.gene82122:intron | 50.0% | |
| AGGAGAATAGGGCAGAGAGA+AGG | - | chr5.2:17324358-17324377 | MS.gene82122:CDS | 50.0% | |
| AGTTCGAAGATGAGGGAGAG+AGG | - | chr5.2:17322464-17322483 | MS.gene82122:CDS | 50.0% | |
| ATCGTCGTTGATGTCTCCGA+CGG | - | chr5.2:17322307-17322326 | MS.gene82122:CDS | 50.0% | |
| CCAAGAGGAACAAGACGCTT+TGG | - | chr5.2:17322432-17322451 | MS.gene82122:CDS | 50.0% | |
| GAATCGCTCTAGTTAGGGGT+GGG | + | chr5.2:17323261-17323280 | None:intergenic | 50.0% | |
| GAGACTGAGGGAGGAGAATA+GGG | - | chr5.2:17324347-17324366 | MS.gene82122:CDS | 50.0% | |
| GGAGAATAGGGCAGAGAGAA+GGG | - | chr5.2:17324359-17324378 | MS.gene82122:CDS | 50.0% | |
| GGAGACATCAACGACGATGT+TGG | + | chr5.2:17322305-17322324 | None:intergenic | 50.0% | |
| GGGTCAGGATCCATTTGAAC+TGG | - | chr5.2:17323219-17323238 | MS.gene82122:intron | 50.0% | |
| GTGACTGTGGTACTATTCCC+AGG | + | chr5.2:17322274-17322293 | None:intergenic | 50.0% | |
| GTTCGAAGATGAGGGAGAGA+GGG | - | chr5.2:17322465-17322484 | MS.gene82122:CDS | 50.0% | |
| TATGCACTAGTGAGGCCGTT+TGG | + | chr5.2:17323614-17323633 | None:intergenic | 50.0% | |
| TGAATCGCTCTAGTTAGGGG+TGG | + | chr5.2:17323262-17323281 | None:intergenic | 50.0% | |
| ! | AGATGAGGGAGAGAGGGTAT+AGG | - | chr5.2:17322471-17322490 | MS.gene82122:CDS | 50.0% |
| ! | CCAAAGCGTCTTGTTCCTCT+TGG | + | chr5.2:17322435-17322454 | None:intergenic | 50.0% |
| ! | GAGAAGAGCATAGGAGACTG+AGG | - | chr5.2:17324334-17324353 | MS.gene82122:CDS | 50.0% |
| ! | GGAGGGAAAGAGAAGAGCAT+AGG | - | chr5.2:17324325-17324344 | MS.gene82122:CDS | 50.0% |
| ! | GGGCATTGCTTTCCATGTTC+TGG | + | chr5.2:17323871-17323890 | None:intergenic | 50.0% |
| !! | GAACAAGACGCTTTGGGAAG+TGG | - | chr5.2:17322439-17322458 | MS.gene82122:CDS | 50.0% |
| !! | GGTGTGTTATGGATTGGGTC+AGG | - | chr5.2:17323204-17323223 | MS.gene82122:intron | 50.0% |
| AACCACCCCACTTCCTTGGT+GGG | - | chr5.2:17322713-17322732 | MS.gene82122:CDS | 55.0% | |
| AATGGAGATGCAGTGGAGGG+AGG | - | chr5.2:17324203-17324222 | MS.gene82122:CDS | 55.0% | |
| ACAGGAATGGCGGCAGTCAA+TGG | - | chr5.2:17324263-17324282 | MS.gene82122:CDS | 55.0% | |
| AGAGCATAGGAGACTGAGGG+AGG | - | chr5.2:17324338-17324357 | MS.gene82122:CDS | 55.0% | |
| ATGCAACCACCCCACTTCCT+TGG | - | chr5.2:17322709-17322728 | MS.gene82122:CDS | 55.0% | |
| CCTTGTCCCACCAAGGAAGT+GGG | + | chr5.2:17322722-17322741 | None:intergenic | 55.0% | |
| CTTGTCCCACCAAGGAAGTG+GGG | + | chr5.2:17322721-17322740 | None:intergenic | 55.0% | |
| GATAAGGGCGGAGCTTGAGA+GGG | - | chr5.2:17322397-17322416 | MS.gene82122:CDS | 55.0% | |
| GGAGACTGAGGGAGGAGAAT+AGG | - | chr5.2:17324346-17324365 | MS.gene82122:CDS | 55.0% | |
| ! | AACGAAGCCTTGTCCCACCA+AGG | + | chr5.2:17322729-17322748 | None:intergenic | 55.0% |
| ! | GGGGTGGGCTTCACATAATG+AGG | + | chr5.2:17323246-17323265 | None:intergenic | 55.0% |
| ! | TGAGGGAGAGAGGGTATAGG+AGG | - | chr5.2:17322474-17322493 | MS.gene82122:CDS | 55.0% |
| !! | GAGGGAGGTGATGGAAAAGC+GGG | - | chr5.2:17324218-17324237 | MS.gene82122:CDS | 55.0% |
| !! | GGAGGGAGGTGATGGAAAAG+CGG | - | chr5.2:17324217-17324236 | MS.gene82122:CDS | 55.0% |
| CAACCACCCCACTTCCTTGG+TGG | - | chr5.2:17322712-17322731 | MS.gene82122:CDS | 60.0% | |
| CACTAGTGAGGCCGTTTGGC+AGG | + | chr5.2:17323610-17323629 | None:intergenic | 60.0% | |
| CCCACTTCCTTGGTGGGACA+AGG | - | chr5.2:17322719-17322738 | MS.gene82122:CDS | 60.0% | |
| CGATAAGGGCGGAGCTTGAG+AGG | - | chr5.2:17322396-17322415 | MS.gene82122:CDS | 60.0% | |
| GATGCAGTGGAGGGAGGTGA+TGG | - | chr5.2:17324209-17324228 | MS.gene82122:CDS | 60.0% | |
| GCCTTGTCCCACCAAGGAAG+TGG | + | chr5.2:17322723-17322742 | None:intergenic | 60.0% | |
| GTCGTTGATGTCTCCGACGG+CGG | - | chr5.2:17322310-17322329 | MS.gene82122:CDS | 60.0% | |
| ! | GAGGCCGTTTGGCAGGTTGA+AGG | + | chr5.2:17323603-17323622 | None:intergenic | 60.0% |
| !! | GTCTCCTGCTGACTCCACTG+CGG | + | chr5.2:17322362-17322381 | None:intergenic | 60.0% |
| CGGTGGAGGAGACGATGCTC+TGG | - | chr5.2:17322241-17322260 | MS.gene82122:CDS | 65.0% | |
| CTCTCCTCTCTCACCGCCGT+CGG | + | chr5.2:17322326-17322345 | None:intergenic | 65.0% | |
| GATGCTCTGGCAGCTCGCCT+GGG | - | chr5.2:17322254-17322273 | MS.gene82122:CDS | 65.0% | |
| GGATACCAGCTCAGCCGCAG+TGG | - | chr5.2:17322345-17322364 | MS.gene82122:CDS | 65.0% | |
| GTCCCACCAAGGAAGTGGGG+TGG | + | chr5.2:17322718-17322737 | None:intergenic | 65.0% | |
| TCAGCCGCAGTGGAGTCAGC+AGG | - | chr5.2:17322355-17322374 | MS.gene82122:CDS | 65.0% | |
| TGACTCCACTGCGGCTGAGC+TGG | + | chr5.2:17322353-17322372 | None:intergenic | 65.0% | |
| CGACGGCGGTGAGAGAGGAG+AGG | - | chr5.2:17322324-17322343 | MS.gene82122:CDS | 70.0% | |
| CGATGCTCTGGCAGCTCGCC+TGG | - | chr5.2:17322253-17322272 | MS.gene82122:CDS | 70.0% | |
| GTCTCCGACGGCGGTGAGAG+AGG | - | chr5.2:17322319-17322338 | MS.gene82122:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 17322230 | 17324431 | 17322230 | ID=MS.gene82122 |
| chr5.2 | mRNA | 17322230 | 17324431 | 17322230 | ID=MS.gene82122.t1;Parent=MS.gene82122 |
| chr5.2 | exon | 17324114 | 17324431 | 17324114 | ID=MS.gene82122.t1.exon1;Parent=MS.gene82122.t1 |
| chr5.2 | CDS | 17324114 | 17324431 | 17324114 | ID=cds.MS.gene82122.t1;Parent=MS.gene82122.t1 |
| chr5.2 | exon | 17322230 | 17322811 | 17322230 | ID=MS.gene82122.t1.exon2;Parent=MS.gene82122.t1 |
| chr5.2 | CDS | 17322230 | 17322811 | 17322230 | ID=cds.MS.gene82122.t1;Parent=MS.gene82122.t1 |
| Gene Sequence |
| Protein sequence |
