AlfalfaGEDB | MS.gene82203

M. sativa cultivar XinJiangDaYe / MS.gene82203

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82203.t1	XP_003605334.1	94.3	159	9	0	1	159	1	159	4.50E-76	293.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82203.t1	Q9FJK3	44.2	156	86	1	1	155	1	156	2.1e-26	120.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82203.t1	G7JJI5	94.3	159	9	0	1	159	1	159	3.2e-76	293.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene82203.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82203.t1	MTR_4g028720	94.340	159	9	0	1	159	1	159	1.59e-100	286
MS.gene82203.t1	MTR_7g011950	88.679	159	18	0	1	159	1	159	5.52e-96	274
MS.gene82203.t1	MTR_1g077320	83.648	159	26	0	1	159	1	159	4.75e-89	256
MS.gene82203.t1	MTR_1g077390	70.701	157	46	0	1	157	1	157	1.52e-77	228
MS.gene82203.t1	MTR_5g047580	69.231	156	48	0	1	156	1	156	7.50e-74	218
MS.gene82203.t1	MTR_1g084950	73.718	156	41	0	1	156	1	156	1.58e-72	215
MS.gene82203.t1	MTR_1g077300	72.956	159	41	1	1	159	1	157	2.54e-70	209
MS.gene82203.t1	MTR_1g090697	55.484	155	69	0	1	155	1	155	3.91e-56	173
MS.gene82203.t1	MTR_5g047560	57.692	156	50	1	1	156	1	140	4.41e-55	170
MS.gene82203.t1	MTR_1g090710	53.205	156	72	1	1	155	1	156	1.19e-53	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82203.t1	AT3G05860	38.926	149	90	1	1	148	1	149	1.55e-29	107
MS.gene82203.t1	AT5G48670	44.444	153	84	1	1	152	1	153	2.92e-29	109
MS.gene82203.t1	AT3G05860	38.926	149	90	1	1	148	1	149	7.29e-29	106
MS.gene82203.t1	AT3G05860	38.926	149	90	1	1	148	1	149	1.07e-28	106
MS.gene82203.t1	AT5G26630	38.750	160	97	1	1	159	1	160	4.39e-27	101
MS.gene82203.t1	AT1G65300	35.211	142	91	1	3	143	2	143	2.36e-24	95.9
MS.gene82203.t1	AT1G65330	36.054	147	93	1	3	148	2	148	4.41e-24	95.1
MS.gene82203.t1	AT5G27960	41.026	117	66	2	4	119	2	116	4.39e-22	90.5
MS.gene82203.t1	AT5G26650	41.026	117	66	2	4	119	2	116	5.53e-22	90.9
MS.gene82203.t1	AT2G28700	39.216	102	61	1	1	101	1	102	7.03e-20	84.7

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Find 25 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTGCAAAGTCATGGCT+AGG	0.583737	4.2:+75772403	None:intergenic
AAGCTAAACAGATGATTGAG+AGG	0.630265	4.2:+75772604	MS.gene82203:CDS
ACCTGCAAGCGGAGGAAGAA+AGG	0.493077	4.2:+75772474	MS.gene82203:CDS
ACCTTTCTTCCTCCGCTTGC+AGG	0.240089	4.2:-75772475	None:intergenic
AGAGAACTCACTATTCTTTG+TGG	0.526508	4.2:+75772513	MS.gene82203:CDS
AGAGCTCATATATCAAAGAT+GGG	0.593695	4.2:+75772631	MS.gene82203:CDS
AGAGGTGTGGCCAAATCTAA+AGG	0.522555	4.2:+75772581	MS.gene82203:CDS
AGCTGAACATTCGTATGATT+TGG	0.323437	4.2:+75772748	MS.gene82203:CDS
CAAAGTCATGGCTAGGAAGA+AGG	0.502352	4.2:+75772410	None:intergenic
CAAGAAAGGCGACCTGCAAG+CGG	0.616094	4.2:+75772463	MS.gene82203:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGCTCATATATCAAAGAT+GGG	+	chr4.2:75772631-75772650	MS.gene82203:CDS	30.0%
GCAAAAGATTACTAAAGCTA+GGG	+	chr4.2:75772686-75772705	MS.gene82203:CDS	30.0%
GGTTTCTGATTATAAAGACT+TGG	+	chr4.2:75772806-75772825	MS.gene82203:CDS	30.0%
TGCAAAAGATTACTAAAGCT+AGG	+	chr4.2:75772685-75772704	MS.gene82203:CDS	30.0%
TTTGCAAAAGGAAACTTTCT+TGG	-	chr4.2:75772671-75772690	None:intergenic	30.0%
AAGCTAAACAGATGATTGAG+AGG	+	chr4.2:75772604-75772623	MS.gene82203:CDS	35.0%
AGAGAACTCACTATTCTTTG+TGG	+	chr4.2:75772513-75772532	MS.gene82203:CDS	35.0%
AGCTGAACATTCGTATGATT+TGG	+	chr4.2:75772748-75772767	MS.gene82203:CDS	35.0%
CAGAGCTCATATATCAAAGA+TGG	+	chr4.2:75772630-75772649	MS.gene82203:CDS	35.0%
TCGGAAATTATAGCACATGC+TGG	-	chr4.2:75772543-75772562	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	75772417	75772896	75772417	ID=MS.gene82203
chr4.2	mRNA	75772417	75772896	75772417	ID=MS.gene82203.t1;Parent=MS.gene82203
chr4.2	exon	75772417	75772896	75772417	ID=MS.gene82203.t1.exon1;Parent=MS.gene82203.t1
chr4.2	CDS	75772417	75772896	75772417	ID=cds.MS.gene82203.t1;Parent=MS.gene82203.t1

Gene Sequence

>MS.gene82203

ATGGCTAGGAAGAAGGTGAAACTCGCTTTTATCTTAAATGATTCAACAAGAAAGGCGACCTGCAAGCGGAGGAAGAAAGGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTCGATTCTAAAACAGAGGTGTGGCCAAATCTAAAGGAAGCTAAACAGATGATTGAGAGGTATCAGAGCTCATATATCAAAGATGGGAGAAAAAATGTGAACCAAGAAAGTTTCCTTTTGCAAAAGATTACTAAAGCTAGGGAGCAACTGAAAATACAAAGACACGACAATCATGAGAATGAGCTGAACATTCGTATGATTTGGTACCTACAAAACAACAAGCTGCCAGATGATGTGACGGTTTCTGATTATAAAGACTTGGATAAGTTGATTGAAAAAAATATGAAGGAAGTTGATGACAAGATGGCTTCACTTAGTTTATCAAACTGA

Protein sequence

>MS.gene82203.t1

MARKKVKLAFILNDSTRKATCKRRKKGIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLKEAKQMIERYQSSYIKDGRKNVNQESFLLQKITKAREQLKIQRHDNHENELNIRMIWYLQNNKLPDDVTVSDYKDLDKLIEKNMKEVDDKMASLSLSN