AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82206

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82206.t1 MTR_4g028610 98.144 485 8 1 1 484 1 485 0.0 989
MS.gene82206.t1 MTR_4g109340 39.130 161 78 4 224 381 345 488 5.06e-25 108
MS.gene82206.t1 MTR_4g109340 26.357 387 207 13 6 334 4 370 1.32e-17 85.9
MS.gene82206.t1 MTR_1g090703 35.345 232 113 10 158 380 98 301 4.18e-23 100
MS.gene82206.t1 MTR_5g062300 40.940 149 67 2 227 375 119 246 2.03e-21 93.6
MS.gene82206.t1 MTR_5g099040 44.737 114 49 3 227 335 130 234 2.19e-20 91.7
MS.gene82206.t1 MTR_0160s0030 36.310 168 49 5 215 382 231 340 9.12e-20 91.3
MS.gene82206.t1 MTR_1g106730 32.500 200 51 6 136 335 39 154 8.72e-19 86.3
MS.gene82206.t1 MTR_1g062780 34.978 223 106 10 161 380 80 266 2.87e-16 79.7
MS.gene82206.t1 MTR_3g102980 29.048 210 67 5 134 335 30 165 7.45e-16 77.4
MS.gene82206.t1 MTR_2g084315 30.041 243 115 9 158 380 67 274 8.85e-16 78.2
MS.gene82206.t1 MTR_4g057230 36.686 169 75 6 226 380 112 262 8.06e-15 75.5
MS.gene82206.t1 MTR_1g018420 29.817 218 87 6 157 364 38 199 5.82e-14 71.6
MS.gene82206.t1 MTR_1g077730 28.837 215 119 7 177 379 1 193 2.25e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82206.t1 AT1G02040 36.437 247 99 8 136 377 89 282 1.54e-31 124
MS.gene82206.t1 AT4G35280 30.000 310 128 9 66 375 64 284 6.18e-27 110
MS.gene82206.t1 AT2G17180 29.811 265 99 6 71 335 57 234 5.18e-25 104
MS.gene82206.t1 AT5G03510 31.439 264 142 9 132 392 43 270 2.95e-21 94.4
MS.gene82206.t1 AT2G28200 32.377 244 114 9 148 380 58 261 8.18e-20 90.1
MS.gene82206.t1 AT3G60580 30.088 226 90 4 156 381 121 278 2.17e-19 89.0
MS.gene82206.t1 AT5G04390 29.070 258 112 8 158 380 96 317 9.91e-19 88.2
MS.gene82206.t1 AT3G10470 33.714 175 90 2 226 380 181 349 6.71e-18 85.9
MS.gene82206.t1 AT3G49930 31.188 202 74 5 134 335 36 172 8.41e-18 82.4
MS.gene82206.t1 AT5G56200 33.793 145 69 2 229 362 344 472 9.18e-18 86.3
MS.gene82206.t1 AT1G02030 29.012 324 143 10 78 384 7 260 1.27e-17 83.2
MS.gene82206.t1 AT3G19580 30.986 213 80 8 134 335 32 188 1.29e-16 80.5
MS.gene82206.t1 AT3G19580 30.986 213 80 8 134 335 32 188 1.29e-16 80.5
MS.gene82206.t1 AT5G67450 31.220 205 88 6 134 335 33 187 1.44e-16 79.7
MS.gene82206.t1 AT1G49900 36.364 110 37 3 226 335 192 268 3.23e-12 69.7

Find 91 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAATAACCCTACATTAA+TGG 0.180867 4.2:+75718642 MS.gene82206:CDS
ATTTAGGTATTTGTTCTATT+TGG 0.213723 4.2:-75718822 None:intergenic
TCTGCCATGGCGTCGGATTC+TGG 0.241406 4.2:-75718100 None:intergenic
AGCCATTAATGTAGGGTTAT+TGG 0.241430 4.2:-75718644 None:intergenic
TCAGAAGAGTTATCAAATTT+AGG 0.259764 4.2:-75718838 None:intergenic
GGCAAAATTAAGTGAGTTAA+AGG 0.281586 4.2:+75719110 MS.gene82206:CDS
AATGGTGCAATGAAATTCAT+AGG 0.324641 4.2:-75718349 None:intergenic
TTCAATTCACATCAAGCATT+AGG 0.345187 4.2:+75718466 MS.gene82206:CDS
GAATACATACGTTTGTTACT+TGG 0.350695 4.2:-75717938 None:intergenic
TTTGGATGTGGAAGAGCATT+AGG 0.359877 4.2:+75717824 MS.gene82206:CDS
TTGTCGGAGCCGGAAGATTA+AGG 0.360072 4.2:-75718882 None:intergenic
CCATGGTTGCAAGTTGGAAT+TGG 0.363083 4.2:+75719162 MS.gene82206:CDS
CAAACTTGACCTTAATCTTC+CGG 0.388092 4.2:+75718873 MS.gene82206:CDS
AAACAACAATAACAACAATA+AGG 0.396628 4.2:+75718393 MS.gene82206:CDS
TGTCACAGGAGTTTCTCTTC+AGG 0.396944 4.2:+75718709 MS.gene82206:CDS
TTCTCTTCAGGACAAGCATT+AGG 0.410263 4.2:+75718721 MS.gene82206:CDS
AGGTCAAGTTTGAGATCAAT+TGG 0.419542 4.2:-75718862 None:intergenic
AATTGAACATTCATGCACTT+TGG 0.420744 4.2:-75718686 None:intergenic
GCTGAGGCACATGATTCTTC+CGG 0.421597 4.2:-75718301 None:intergenic
AGATCTTCTTCTTCACTTGA+AGG 0.423728 4.2:-75718223 None:intergenic
CCATAGAGCAAGTCACAAAA+AGG 0.435253 4.2:+75718492 MS.gene82206:CDS
AAGTAAATTTGTGTATTTGT+CGG 0.443913 4.2:-75718898 None:intergenic
GATGAAGAAGCCATTAATGT+AGG 0.452698 4.2:-75718652 None:intergenic
TGATGATCCGGCGAGCGATT+GGG 0.454164 4.2:+75717898 MS.gene82206:CDS
TCCTCAACAATACTATCATC+AGG 0.455329 4.2:-75718550 None:intergenic
TTCTTCATCTTTGCTAGCTG+AGG 0.456328 4.2:-75718317 None:intergenic
AAGGATGTAATTAACATTGG+TGG 0.466872 4.2:+75719129 MS.gene82206:CDS
ATGGTGATGGCGTCAGTGGC+AGG 0.472265 4.2:+75718125 MS.gene82206:CDS
TGATCCTCTTGAGGTTGAAC+CGG 0.478585 4.2:+75718282 MS.gene82206:CDS
ATGATGATCCGGCGAGCGAT+TGG 0.479445 4.2:+75717897 MS.gene82206:CDS
AGGCGATGAAACAAGTCAAA+TGG 0.487942 4.2:+75717871 MS.gene82206:CDS
AAATTTACTTGCAACCAACA+TGG 0.497835 4.2:+75718911 MS.gene82206:CDS
TGCTATTGTTGATCCTCTTG+AGG 0.500759 4.2:+75718273 MS.gene82206:CDS
AATTTACTTGCAACCAACAT+GGG 0.509114 4.2:+75718912 MS.gene82206:CDS
AGATGATAGCAAGGTTAAGC+TGG 0.510318 4.2:+75719089 MS.gene82206:CDS
AAGGCCAAAGGTGTTGCAAA+AGG 0.512681 4.2:+75718412 MS.gene82206:CDS
GAGGATGTGGCTGGTCGAAA+AGG 0.514988 4.2:+75718149 MS.gene82206:CDS
ACATACGTTTGTTACTTGGT+GGG 0.515314 4.2:-75717934 None:intergenic
CCGGCGAGCGATTGGGAAGG+TGG 0.515356 4.2:+75717905 MS.gene82206:CDS
AAACAACAACCTTAATGCAT+TGG 0.516007 4.2:+75719047 MS.gene82206:CDS
TACATACGTTTGTTACTTGG+TGG 0.516103 4.2:-75717935 None:intergenic
TCAAATGGACGATGATGATC+CGG 0.517310 4.2:+75717886 MS.gene82206:CDS
TTAAAGGATGTAATTAACAT+TGG 0.518467 4.2:+75719126 MS.gene82206:CDS
AAATTGTATGGCTTTGATTG+TGG 0.523384 4.2:+75717754 None:intergenic
AGGTCGATGCGAACTAAAGT+AGG 0.524376 4.2:+75718175 MS.gene82206:CDS
GTGGTCACAAGAGATGTCAT+TGG 0.533236 4.2:+75718743 MS.gene82206:CDS
TCTTCACCATGGTTGCAAGT+TGG 0.534611 4.2:+75719156 MS.gene82206:CDS
CCACCTTCCCAATCGCTCGC+CGG 0.538021 4.2:-75717905 None:intergenic
GTCAGTGGCAGGAGAGGATG+TGG 0.539916 4.2:+75718136 MS.gene82206:CDS
TCAACTCTACAATTTGATCA+TGG 0.541203 4.2:+75718616 MS.gene82206:CDS
AAGAGGATCAACAATAGCAT+TGG 0.543537 4.2:-75718269 None:intergenic
ATGAATGTTCAATTTGTCAC+AGG 0.545564 4.2:+75718695 MS.gene82206:CDS
GACGATGGTGATGGCGTCAG+TGG 0.546521 4.2:+75718121 MS.gene82206:CDS
CCAATTCCAACTTGCAACCA+TGG 0.547493 4.2:-75719162 None:intergenic
ATGAAGAAGCCATTAATGTA+GGG 0.551910 4.2:-75718651 None:intergenic
CTAGCCAATGTTGATGTGTC+GGG 0.553643 4.2:-75718781 None:intergenic
GGAGGACATATGAGAGCTCA+TGG 0.556898 4.2:+75717845 MS.gene82206:CDS
ATTTGTGTATTTGTCGGAGC+CGG 0.557536 4.2:-75718892 None:intergenic
GTGGCTGGTCGAAAAGGAAA+AGG 0.562748 4.2:+75718155 MS.gene82206:CDS
CTCTCCAGAATCCGACGCCA+TGG 0.566778 4.2:+75718096 MS.gene82206:CDS
CATATGAGAGCTCATGGCAT+AGG 0.569691 4.2:+75717851 MS.gene82206:CDS
GCCATCACCATCGTCTGCCA+TGG 0.569907 4.2:-75718113 None:intergenic
ATGGTGCAATGAAATTCATA+GGG 0.570005 4.2:-75718348 None:intergenic
TGGAAATCATTCCTCGAACA+CGG 0.572286 4.2:+75718031 MS.gene82206:CDS
CCTAGCCAATGTTGATGTGT+CGG 0.581613 4.2:-75718782 None:intergenic
AATTCACATCAAGCATTAGG+TGG 0.583717 4.2:+75718469 MS.gene82206:CDS
GTGGCAGGAGAGGATGTGGC+TGG 0.584863 4.2:+75718140 MS.gene82206:CDS
CTTGAATTTGCACCCCATGT+TGG 0.585693 4.2:-75718925 None:intergenic
TGCACCCGACACATCAACAT+TGG 0.597550 4.2:+75718777 MS.gene82206:CDS
CCGACACATCAACATTGGCT+AGG 0.600465 4.2:+75718782 MS.gene82206:CDS
ACCATCGTCTGCCATGGCGT+CGG 0.604106 4.2:-75718107 None:intergenic
TCTTCCGGTTCAACCTCAAG+AGG 0.608243 4.2:-75718286 None:intergenic
TGATAATGAAGATGATAGCA+AGG 0.609766 4.2:+75719080 MS.gene82206:CDS
CCTCAACAATACTATCATCA+GGG 0.616413 4.2:-75718549 None:intergenic
TGCAAATTCAAGTACAACAA+AGG 0.619130 4.2:+75718936 MS.gene82206:CDS
TCTTCAGGACAAGCATTAGG+TGG 0.619434 4.2:+75718724 MS.gene82206:CDS
AATAACAACAATAAGGCCAA+AGG 0.626216 4.2:+75718400 MS.gene82206:CDS
CCCTGATGATAGTATTGTTG+AGG 0.628128 4.2:+75718549 MS.gene82206:CDS
GATGGCGTCAGTGGCAGGAG+AGG 0.632559 4.2:+75718130 MS.gene82206:CDS
GGATGTGGAAGAGCATTAGG+AGG 0.639239 4.2:+75717827 MS.gene82206:CDS
ATTTACTTGCAACCAACATG+GGG 0.643546 4.2:+75718913 MS.gene82206:CDS
GCCATGGCAGACGATGGTGA+TGG 0.647379 4.2:+75718112 MS.gene82206:CDS
TCCGACGCCATGGCAGACGA+TGG 0.647564 4.2:+75718106 MS.gene82206:CDS
TAGGGAATTCTATAAGACAA+TGG 0.648546 4.2:-75718367 None:intergenic
AAAGGACAACAACATCAAAG+AGG 0.651093 4.2:+75718954 MS.gene82206:CDS
GATCCGGCGAGCGATTGGGA+AGG 0.658250 4.2:+75717902 MS.gene82206:CDS
CATGGCGTCGGATTCTGGAG+AGG 0.659545 4.2:-75718095 None:intergenic
TTGGTGGAAGTTCTTCACCA+TGG 0.661371 4.2:+75719145 MS.gene82206:CDS
TTGGTACAACAACTGATGTG+AGG 0.681780 4.2:+75719181 MS.gene82206:CDS
TGTAGGGTGTGTGAGCATTG+TGG 0.711110 4.2:+75717992 MS.gene82206:CDS
AAAATGCAACTCAGATGACG+CGG 0.742662 4.2:+75718054 MS.gene82206:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTAAAATTTGCAAAAA+AGG + chr4.2:75717800-75717819 MS.gene82206:CDS 15.0%
!! AAACAACAATAACAACAATA+AGG + chr4.2:75718393-75718412 MS.gene82206:CDS 20.0%
!! AAGTAAATTTGTGTATTTGT+CGG - chr4.2:75718901-75718920 None:intergenic 20.0%
!! ATTTAGGTATTTGTTCTATT+TGG - chr4.2:75718825-75718844 None:intergenic 20.0%
!! TAATAAGCTAAAAAGTTGTA+GGG + chr4.2:75717976-75717995 MS.gene82206:CDS 20.0%
!! TTAAAGGATGTAATTAACAT+TGG + chr4.2:75719126-75719145 MS.gene82206:CDS 20.0%
!!! TTGTTATTGTTGTTTTCATA+GGG - chr4.2:75718388-75718407 None:intergenic 20.0%
!!! TTTCATTATTTTGATCAACT+AGG - chr4.2:75719011-75719030 None:intergenic 20.0%
! AAAATTTGCAAAAAAGGCTT+TGG + chr4.2:75717806-75717825 MS.gene82206:CDS 25.0%
! CTAATAAGCTAAAAAGTTGT+AGG + chr4.2:75717975-75717994 MS.gene82206:CDS 25.0%
! TCAGAAGAGTTATCAAATTT+AGG - chr4.2:75718841-75718860 None:intergenic 25.0%
!!! CTACAACTTTTTAGCTTATT+AGG - chr4.2:75717977-75717996 None:intergenic 25.0%
!!! GGTTTTTGTTTTGATTTTGT+TGG - chr4.2:75718990-75719009 None:intergenic 25.0%
!!! GTTGTTATTGTTGTTTTCAT+AGG - chr4.2:75718389-75718408 None:intergenic 25.0%
AAACAACAACCTTAATGCAT+TGG + chr4.2:75719047-75719066 MS.gene82206:CDS 30.0%
AAATTTACTTGCAACCAACA+TGG + chr4.2:75718911-75718930 MS.gene82206:CDS 30.0%
AAGGATGTAATTAACATTGG+TGG + chr4.2:75719129-75719148 MS.gene82206:CDS 30.0%
AATAACAACAATAAGGCCAA+AGG + chr4.2:75718400-75718419 MS.gene82206:CDS 30.0%
AATGGTGCAATGAAATTCAT+AGG - chr4.2:75718352-75718371 None:intergenic 30.0%
AATTGAACATTCATGCACTT+TGG - chr4.2:75718689-75718708 None:intergenic 30.0%
AATTTACTTGCAACCAACAT+GGG + chr4.2:75718912-75718931 MS.gene82206:CDS 30.0%
ATGAAGAAGCCATTAATGTA+GGG - chr4.2:75718654-75718673 None:intergenic 30.0%
ATGAATGTTCAATTTGTCAC+AGG + chr4.2:75718695-75718714 MS.gene82206:CDS 30.0%
ATGGTGCAATGAAATTCATA+GGG - chr4.2:75718351-75718370 None:intergenic 30.0%
GGCAAAATTAAGTGAGTTAA+AGG + chr4.2:75719110-75719129 MS.gene82206:CDS 30.0%
TAGGGAATTCTATAAGACAA+TGG - chr4.2:75718370-75718389 None:intergenic 30.0%
TCAACTCTACAATTTGATCA+TGG + chr4.2:75718616-75718635 MS.gene82206:CDS 30.0%
TGCAAATTCAAGTACAACAA+AGG + chr4.2:75718936-75718955 MS.gene82206:CDS 30.0%
TTCAATTCACATCAAGCATT+AGG + chr4.2:75718466-75718485 MS.gene82206:CDS 30.0%
TTCCAATAACCCTACATTAA+TGG + chr4.2:75718642-75718661 MS.gene82206:CDS 30.0%
! CATTTTGTACCAATGCATTA+AGG - chr4.2:75719059-75719078 None:intergenic 30.0%
! GAATACATACGTTTGTTACT+TGG - chr4.2:75717941-75717960 None:intergenic 30.0%
! TGATAATGAAGATGATAGCA+AGG + chr4.2:75719080-75719099 MS.gene82206:CDS 30.0%
!! AGAGTTGAGTTTGATTTTGA+AGG - chr4.2:75718604-75718623 None:intergenic 30.0%
!!! GTGGCAAAGAATTTTTTTCT+TGG + chr4.2:75718011-75718030 MS.gene82206:CDS 30.0%
AAAGGACAACAACATCAAAG+AGG + chr4.2:75718954-75718973 MS.gene82206:CDS 35.0%
AAGAGGATCAACAATAGCAT+TGG - chr4.2:75718272-75718291 None:intergenic 35.0%
AATTCACATCAAGCATTAGG+TGG + chr4.2:75718469-75718488 MS.gene82206:CDS 35.0%
AGATCTTCTTCTTCACTTGA+AGG - chr4.2:75718226-75718245 None:intergenic 35.0%
AGCAAGTCACAAAAAGGTTA+AGG + chr4.2:75718498-75718517 MS.gene82206:CDS 35.0%
AGCCATTAATGTAGGGTTAT+TGG - chr4.2:75718647-75718666 None:intergenic 35.0%
ATTTACTTGCAACCAACATG+GGG + chr4.2:75718913-75718932 MS.gene82206:CDS 35.0%
CAAACTTGACCTTAATCTTC+CGG + chr4.2:75718873-75718892 MS.gene82206:CDS 35.0%
CCTCAACAATACTATCATCA+GGG - chr4.2:75718552-75718571 None:intergenic 35.0%
GATGAAGAAGCCATTAATGT+AGG - chr4.2:75718655-75718674 None:intergenic 35.0%
GCAAGTCACAAAAAGGTTAA+GGG + chr4.2:75718499-75718518 MS.gene82206:CDS 35.0%
TCCTCAACAATACTATCATC+AGG - chr4.2:75718553-75718572 None:intergenic 35.0%
! ACATACGTTTGTTACTTGGT+GGG - chr4.2:75717937-75717956 None:intergenic 35.0%
! AGGTCAAGTTTGAGATCAAT+TGG - chr4.2:75718865-75718884 None:intergenic 35.0%
! ATGCACTTTGGATTTTCTCT+TGG - chr4.2:75718677-75718696 None:intergenic 35.0%
! TAATCCTTTTGCAACACCTT+TGG - chr4.2:75718419-75718438 None:intergenic 35.0%
! TACATACGTTTGTTACTTGG+TGG - chr4.2:75717938-75717957 None:intergenic 35.0%
AAAATGCAACTCAGATGACG+CGG + chr4.2:75718054-75718073 MS.gene82206:CDS 40.0%
AGATGATAGCAAGGTTAAGC+TGG + chr4.2:75719089-75719108 MS.gene82206:CDS 40.0%
AGGCGATGAAACAAGTCAAA+TGG + chr4.2:75717871-75717890 MS.gene82206:CDS 40.0%
ATTTGTGTATTTGTCGGAGC+CGG - chr4.2:75718895-75718914 None:intergenic 40.0%
CCATAGAGCAAGTCACAAAA+AGG + chr4.2:75718492-75718511 MS.gene82206:CDS 40.0%
CCCTGATGATAGTATTGTTG+AGG + chr4.2:75718549-75718568 MS.gene82206:CDS 40.0%
TCAAATGGACGATGATGATC+CGG + chr4.2:75717886-75717905 MS.gene82206:CDS 40.0%
TGCTATTGTTGATCCTCTTG+AGG + chr4.2:75718273-75718292 MS.gene82206:CDS 40.0%
TGGAAATCATTCCTCGAACA+CGG + chr4.2:75718031-75718050 MS.gene82206:CDS 40.0%
TTCTCTTCAGGACAAGCATT+AGG + chr4.2:75718721-75718740 MS.gene82206:CDS 40.0%
TTCTTCATCTTTGCTAGCTG+AGG - chr4.2:75718320-75718339 None:intergenic 40.0%
TTGGTACAACAACTGATGTG+AGG + chr4.2:75719181-75719200 MS.gene82206:CDS 40.0%
! TTAAGGGATGTTTTGCTGCA+AGG + chr4.2:75718515-75718534 MS.gene82206:CDS 40.0%
!! TGCAAAAAAGGCTTTGGATG+TGG + chr4.2:75717812-75717831 MS.gene82206:CDS 40.0%
!! TTTGGATGTGGAAGAGCATT+AGG + chr4.2:75717824-75717843 MS.gene82206:CDS 40.0%
!!! CCTTTTTGTGACTTGCTCTA+TGG - chr4.2:75718495-75718514 None:intergenic 40.0%
AGGTCGATGCGAACTAAAGT+AGG + chr4.2:75718175-75718194 MS.gene82206:CDS 45.0%
CATATGAGAGCTCATGGCAT+AGG + chr4.2:75717851-75717870 MS.gene82206:CDS 45.0%
CCAATTCCAACTTGCAACCA+TGG - chr4.2:75719165-75719184 None:intergenic 45.0%
CCTAGCCAATGTTGATGTGT+CGG - chr4.2:75718785-75718804 None:intergenic 45.0%
CTAGCCAATGTTGATGTGTC+GGG - chr4.2:75718784-75718803 None:intergenic 45.0%
CTTGAATTTGCACCCCATGT+TGG - chr4.2:75718928-75718947 None:intergenic 45.0%
GTGGTCACAAGAGATGTCAT+TGG + chr4.2:75718743-75718762 MS.gene82206:CDS 45.0%
TCTTCACCATGGTTGCAAGT+TGG + chr4.2:75719156-75719175 MS.gene82206:CDS 45.0%
TCTTCAGGACAAGCATTAGG+TGG + chr4.2:75718724-75718743 MS.gene82206:CDS 45.0%
TGATCCTCTTGAGGTTGAAC+CGG + chr4.2:75718282-75718301 MS.gene82206:CDS 45.0%
TGTCACAGGAGTTTCTCTTC+AGG + chr4.2:75718709-75718728 MS.gene82206:CDS 45.0%
TTGGTGGAAGTTCTTCACCA+TGG + chr4.2:75719145-75719164 MS.gene82206:CDS 45.0%
! AGTTGCATTTTCCGTGTTCG+AGG - chr4.2:75718045-75718064 None:intergenic 45.0%
! CCATGGTTGCAAGTTGGAAT+TGG + chr4.2:75719162-75719181 MS.gene82206:CDS 45.0%
!! AAGGCCAAAGGTGTTGCAAA+AGG + chr4.2:75718412-75718431 MS.gene82206:CDS 45.0%
GCTGAGGCACATGATTCTTC+CGG - chr4.2:75718304-75718323 None:intergenic 50.0%
GGAGGACATATGAGAGCTCA+TGG + chr4.2:75717845-75717864 MS.gene82206:CDS 50.0%
TCTTCCGGTTCAACCTCAAG+AGG - chr4.2:75718289-75718308 None:intergenic 50.0%
TGCACCCGACACATCAACAT+TGG + chr4.2:75718777-75718796 MS.gene82206:CDS 50.0%
TTGTCGGAGCCGGAAGATTA+AGG - chr4.2:75718885-75718904 None:intergenic 50.0%
! CCGACACATCAACATTGGCT+AGG + chr4.2:75718782-75718801 MS.gene82206:CDS 50.0%
! GTGGCTGGTCGAAAAGGAAA+AGG + chr4.2:75718155-75718174 MS.gene82206:CDS 50.0%
! TGTAGGGTGTGTGAGCATTG+TGG + chr4.2:75717992-75718011 MS.gene82206:CDS 50.0%
!! GGATGTGGAAGAGCATTAGG+AGG + chr4.2:75717827-75717846 MS.gene82206:CDS 50.0%
ATGATGATCCGGCGAGCGAT+TGG + chr4.2:75717897-75717916 MS.gene82206:CDS 55.0%
TGATGATCCGGCGAGCGATT+GGG + chr4.2:75717898-75717917 MS.gene82206:CDS 55.0%
! GAGGATGTGGCTGGTCGAAA+AGG + chr4.2:75718149-75718168 MS.gene82206:CDS 55.0%
ACCATCGTCTGCCATGGCGT+CGG - chr4.2:75718110-75718129 None:intergenic 60.0%
CTCTCCAGAATCCGACGCCA+TGG + chr4.2:75718096-75718115 MS.gene82206:CDS 60.0%
GCCATCACCATCGTCTGCCA+TGG - chr4.2:75718116-75718135 None:intergenic 60.0%
GCCATGGCAGACGATGGTGA+TGG + chr4.2:75718112-75718131 MS.gene82206:CDS 60.0%
GTCAGTGGCAGGAGAGGATG+TGG + chr4.2:75718136-75718155 MS.gene82206:CDS 60.0%
! CATGGCGTCGGATTCTGGAG+AGG - chr4.2:75718098-75718117 None:intergenic 60.0%
! TCTGCCATGGCGTCGGATTC+TGG - chr4.2:75718103-75718122 None:intergenic 60.0%
!! ATGGTGATGGCGTCAGTGGC+AGG + chr4.2:75718125-75718144 MS.gene82206:CDS 60.0%
!! GACGATGGTGATGGCGTCAG+TGG + chr4.2:75718121-75718140 MS.gene82206:CDS 60.0%
CCACCTTCCCAATCGCTCGC+CGG - chr4.2:75717908-75717927 None:intergenic 65.0%
GATCCGGCGAGCGATTGGGA+AGG + chr4.2:75717902-75717921 MS.gene82206:CDS 65.0%
GATGGCGTCAGTGGCAGGAG+AGG + chr4.2:75718130-75718149 MS.gene82206:CDS 65.0%
GTGGCAGGAGAGGATGTGGC+TGG + chr4.2:75718140-75718159 MS.gene82206:CDS 65.0%
TCCGACGCCATGGCAGACGA+TGG + chr4.2:75718106-75718125 MS.gene82206:CDS 65.0%
CCGGCGAGCGATTGGGAAGG+TGG + chr4.2:75717905-75717924 MS.gene82206:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 75717761 75719215 75717761 ID=MS.gene82206
chr4.2 mRNA 75717761 75719215 75717761 ID=MS.gene82206.t1;Parent=MS.gene82206
chr4.2 exon 75717761 75719215 75717761 ID=MS.gene82206.t1.exon1;Parent=MS.gene82206.t1
chr4.2 CDS 75717761 75719215 75717761 ID=cds.MS.gene82206.t1;Parent=MS.gene82206.t1
Gene Sequence

>MS.gene82206

ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTAGGAGGACATATGAGAGCTCATGGCATAGGCGATGAAACAAGTCAAATGGACGATGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGTCCCACCAAGTAACAAACGTATGTATTCTTTAAGAACAAATCCTAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAAGAATTTTTTTCTTGGAAATCATTCCTCGAACACGGAAAATGCAACTCAGATGACGCGGATGAAGAGTTTATCATATCCTCTCCAGAATCCGACGCCATGGCAGACGATGGTGATGGCGTCAGTGGCAGGAGAGGATGTGGCTGGTCGAAAAGGAAAAGGTCGATGCGAACTAAAGTAGGAAGTTACAATAACAATTATAATAATCCTTCAAGTGAAGAAGAAGATCTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGATCCTCTTGAGGTTGAACCGGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGTCTTATAGAATTCCCTATGAAAACAACAATAACAACAATAAGGCCAAAGGTGTTGCAAAAGGATTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAATTCACATCAAGCATTAGGTGGCCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCTGCAAGGCTTGATCAAAACCCTGATGATAGTATTGTTGAGGATGATGTCATCACACAAGATGAATTTTTTCCTTCAAAATCAAACTCAACTCTACAATTTGATCATGGCACTTCCAATAACCCTACATTAATGGCTTCTTCATCCAAGAGAAAATCCAAAGTGCATGAATGTTCAATTTGTCACAGGAGTTTCTCTTCAGGACAAGCATTAGGTGGTCACAAGAGATGTCATTGGATCACATCAAATGCACCCGACACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCAAATAGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCGACAAATACACAAATTTACTTGCAACCAACATGGGGTGCAAATTCAAGTACAACAAAGGACAACAACATCAAAGAGGATAACAATAGCCAACAAAATCAAAACAAAAACCTAGTTGATCAAAATAATGAAACTCAAGAGAACAACAAAAACAACAACCTTAATGCATTGGTACAAAATGTTGATAATGAAGATGATAGCAAGGTTAAGCTGGCAAAATTAAGTGAGTTAAAGGATGTAATTAACATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTACAACAACTGATGTGAGGAATGATACGTAA
Protein sequence

>MS.gene82206.t1

MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETSQMDDDDPASDWEGGNVPPSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEEFIISSPESDAMADDGDGVSGRRGCGWSKRKRSMRTKVGSYNNNYNNPSSEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLSYRIPYENNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNPDDSIVEDDVITQDEFFPSKSNSTLQFDHGTSNNPTLMASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDQIEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYLQPTWGANSSTTKDNNIKEDNNSQQNQNKNLVDQNNETQENNKNNNLNALVQNVDNEDDSKVKLAKLSELKDVINIGGSSSPWLQVGIGTTTDVRNDT