AlfalfaGEDB | MS.gene82266

M. sativa cultivar XinJiangDaYe / MS.gene82266

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82266.t1	KEH28285.1	88.4	242	20	1	2	235	348	589	2.90E-114	421.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82266.t1	Q8RWH3	40.3	221	108	7	33	235	92	306	3.3e-34	146.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82266.t1	A0A072UR00	88.4	242	20	1	2	235	348	589	2.1e-114	421.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82266.t1	MTR_5g082700	88.066	243	21	1	1	235	347	589	1.11e-147	426
MS.gene82266.t1	MTR_5g082700	88.066	243	21	1	1	235	347	589	8.72e-147	426
MS.gene82266.t1	MTR_5g082700	88.066	243	21	1	1	235	347	589	1.46e-146	426
MS.gene82266.t1	MTR_6g074905	57.080	226	53	2	18	235	859	1048	5.17e-79	258
MS.gene82266.t1	MTR_6g074870	52.586	232	55	4	12	235	95	279	3.38e-70	219
MS.gene82266.t1	MTR_0349s0030	73.913	115	30	0	121	235	54	168	2.67e-57	184
MS.gene82266.t1	MTR_8g069620	58.228	158	58	1	27	176	14	171	7.85e-55	175
MS.gene82266.t1	MTR_6g074640	50.877	171	46	2	37	207	11	143	4.75e-49	161
MS.gene82266.t1	MTR_8g070930	39.583	240	120	7	15	235	91	324	5.49e-44	158
MS.gene82266.t1	MTR_6g074750	75.000	80	20	0	156	235	18	97	2.98e-38	130
MS.gene82266.t1	MTR_1g111180	33.838	198	112	6	52	235	671	863	2.77e-24	101
MS.gene82266.t1	MTR_1g111180	33.838	198	112	6	52	235	670	862	2.96e-24	101
MS.gene82266.t1	MTR_3g076540	27.907	215	117	5	53	235	90	298	6.96e-19	85.5
MS.gene82266.t1	MTR_3g076540	27.907	215	117	5	53	235	8	216	7.02e-19	84.7
MS.gene82266.t1	MTR_4g104620	27.442	215	118	5	53	235	94	302	1.99e-18	84.0
MS.gene82266.t1	MTR_3g076540	28.571	182	102	3	77	235	23	199	1.35e-17	80.9
MS.gene82266.t1	MTR_4g104620	28.415	183	103	3	76	235	22	199	2.19e-17	80.1
MS.gene82266.t1	MTR_4g104620	28.415	183	103	3	76	235	31	208	2.75e-17	80.1
MS.gene82266.t1	MTR_3g076540	27.670	206	111	5	53	226	90	289	6.73e-17	79.7
MS.gene82266.t1	MTR_3g109390	27.103	214	119	5	53	235	70	277	8.32e-17	78.6
MS.gene82266.t1	MTR_3g109390	27.064	218	122	5	49	235	44	255	9.05e-17	79.0
MS.gene82266.t1	MTR_3g109390	27.064	218	122	5	49	235	66	277	9.23e-17	79.0
MS.gene82266.t1	MTR_3g109390	27.064	218	122	5	49	235	66	277	9.79e-17	79.0
MS.gene82266.t1	MTR_3g086530	24.444	225	128	6	46	235	82	299	2.55e-16	77.0
MS.gene82266.t1	MTR_3g086530	24.444	225	128	6	46	235	82	299	3.28e-16	77.4
MS.gene82266.t1	MTR_3g086530	24.444	225	128	6	46	235	82	299	3.87e-16	77.4
MS.gene82266.t1	MTR_3g109390	27.624	181	104	3	77	235	111	286	1.01e-14	73.2
MS.gene82266.t1	MTR_3g109390	27.624	181	104	3	77	235	89	264	1.02e-14	73.2
MS.gene82266.t1	MTR_3g086530	25.946	185	107	4	76	235	3	182	1.10e-14	72.4
MS.gene82266.t1	MTR_4g056390	34.932	146	78	5	57	189	39	180	1.52e-12	67.0
MS.gene82266.t1	MTR_2g084555	36.134	119	67	3	76	189	67	181	4.00e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82266.t1	AT2G40120	75.566	221	46	1	23	235	227	447	1.58e-117	347
MS.gene82266.t1	AT1G73460	67.699	226	65	1	18	235	819	1044	2.80e-104	327
MS.gene82266.t1	AT1G73460	67.699	226	65	1	18	235	819	1044	2.80e-104	327
MS.gene82266.t1	AT1G73450	67.699	226	65	1	18	235	802	1027	2.80e-104	327
MS.gene82266.t1	AT3G17750	67.257	226	66	1	18	235	788	1013	2.71e-102	321
MS.gene82266.t1	AT5G35980	40.271	221	108	7	33	235	92	306	1.61e-42	154
MS.gene82266.t1	AT5G35980	40.271	221	108	7	33	235	57	271	2.04e-42	154
MS.gene82266.t1	AT5G35980	40.271	221	108	7	33	235	92	306	2.09e-42	154
MS.gene82266.t1	AT1G13350	29.851	201	122	5	49	235	507	702	1.49e-20	90.9
MS.gene82266.t1	AT1G13350	32.716	162	102	4	76	235	473	629	1.81e-20	90.5
MS.gene82266.t1	AT3G53640	33.540	161	102	3	76	235	354	510	2.01e-20	90.5
MS.gene82266.t1	AT1G13350	32.716	162	102	4	76	235	500	656	2.15e-20	90.5
MS.gene82266.t1	AT3G25840	30.928	194	115	6	56	235	354	542	1.04e-19	88.2
MS.gene82266.t1	AT3G25840	32.298	161	102	4	77	235	649	804	1.15e-18	85.5
MS.gene82266.t1	AT4G24740	26.977	215	119	5	53	235	94	302	8.26e-18	81.3
MS.gene82266.t1	AT4G24740	26.977	215	119	5	53	235	94	302	9.01e-18	81.6
MS.gene82266.t1	AT4G24740	26.977	215	119	5	53	235	56	264	1.27e-17	81.6
MS.gene82266.t1	AT4G24740	26.977	215	119	5	53	235	94	302	1.56e-17	81.6
MS.gene82266.t1	AT3G53570	25.561	223	128	5	46	235	104	321	1.86e-17	81.6
MS.gene82266.t1	AT3G53570	25.561	223	128	5	46	235	104	321	1.86e-17	81.6
MS.gene82266.t1	AT3G53570	25.561	223	128	5	46	235	104	321	1.86e-17	81.6
MS.gene82266.t1	AT3G53570	25.561	223	128	5	46	235	90	307	1.93e-17	81.3
MS.gene82266.t1	AT3G53570	25.561	223	128	5	46	235	90	307	1.93e-17	81.3
MS.gene82266.t1	AT4G24740	28.022	182	103	3	77	235	23	199	6.24e-17	77.8
MS.gene82266.t1	AT4G24740	28.022	182	103	3	77	235	23	199	1.44e-16	78.2
MS.gene82266.t1	AT4G24740	28.022	182	103	3	77	235	23	199	1.44e-16	78.2
MS.gene82266.t1	AT4G24740	28.022	182	103	3	77	235	23	199	1.44e-16	78.2
MS.gene82266.t1	AT4G32660	28.972	214	115	5	53	235	67	274	4.91e-16	76.6
MS.gene82266.t1	AT4G32660	28.972	214	115	5	53	235	67	274	6.07e-16	76.6
MS.gene82266.t1	AT4G32660	28.972	214	115	5	53	235	59	266	6.72e-16	76.6
MS.gene82266.t1	AT2G17530	37.288	118	65	3	77	189	66	179	2.08e-12	66.2
MS.gene82266.t1	AT2G17530	37.288	118	65	3	77	189	66	179	4.81e-12	65.5
MS.gene82266.t1	AT2G17530	37.288	118	65	3	77	189	66	179	4.81e-12	65.5
MS.gene82266.t1	AT4G32660	30.303	165	88	3	93	235	3	162	6.44e-12	64.3
MS.gene82266.t1	AT3G44850	36.975	119	66	4	76	189	72	186	3.63e-11	63.2

Find 0 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATCAAAAGTTACAAAAAAT+GGG	-	42454:10210-10229	MS.gene82266:CDS	15.0%
!!	TAATCAAAAGTTACAAAAAA+TGG	-	42454:10209-10228	MS.gene82266:CDS	15.0%
!!	ATTGCAATATTTACATAACT+TGG	-	42454:10150-10169	MS.gene82266:CDS	20.0%
!!	GAAGATTATTAAAAATGACA+AGG	-	42454:9883-9902	MS.gene82266:CDS	20.0%
!!	TTGCAATATTTACATAACTT+GGG	-	42454:10151-10170	MS.gene82266:CDS	20.0%
!!!	CAATTTTTTCATCATATTGA+AGG	+	42454:10336-10355	MS.gene82266:intergenic	20.0%
	CAATGAATAAATGTTCCTGA+TGG	+	42454:10012-10031	MS.gene82266:intergenic	30.0%
	TAAGAAGCTTGATTTCATCT+AGG	+	42454:9925-9944	MS.gene82266:intergenic	30.0%
	TACTATGTGACAGATTATCT+CGG	-	42454:9821-9840	MS.gene82266:CDS	30.0%
!	TCAATCAATTGAGTTGTGTA+AGG	+	42454:10379-10398	MS.gene82266:intergenic	30.0%
!!	CTTTTGATTAGAACGTTTTC+AGG	+	42454:10199-10218	MS.gene82266:intergenic	30.0%
!!	TTATGACTATTTCTACCATC+AGG	-	42454:9994-10013	MS.gene82266:CDS	30.0%
	AAATTCAACCAAGAATCTGG+TGG	-	42454:10070-10089	MS.gene82266:CDS	35.0%
	ATTATTATCCTCTCCATCTG+TGG	+	42454:9660-9679	MS.gene82266:intergenic	35.0%
	CAGAAATTCAACCAAGAATC+TGG	-	42454:10067-10086	MS.gene82266:CDS	35.0%
	CATCTTGACTGTATTTCAAG+AGG	+	42454:9694-9713	MS.gene82266:intergenic	35.0%
	GACTGGATTTGAAGAAAACA+AGG	-	42454:9760-9779	MS.gene82266:CDS	35.0%
	TGTGTCTATATGTACAATCC+CGG	-	42454:10281-10300	MS.gene82266:CDS	35.0%
	TTTGAGCTAAGAATTGTGCA+TGG	-	42454:9728-9747	MS.gene82266:CDS	35.0%
!	ATTGATGACAGAACACCTTT+AGG	-	42454:10352-10371	MS.gene82266:CDS	35.0%
!!	TTAGAACGTTTTCAGGCTTT+AGG	+	42454:10192-10211	MS.gene82266:intergenic	35.0%
	AGAGCTTCTGATGTGATGTT+AGG	-	42454:10310-10329	MS.gene82266:CDS	40.0%
	AGTATGTGGTGTTTATCTCC+CGG	+	42454:9968-9987	MS.gene82266:intergenic	40.0%
	AGTCATAAAGACGCAGTATG+TGG	+	42454:9982-10001	MS.gene82266:intergenic	40.0%
	ATCAGAAGCTCTATAAGACC+GGG	+	42454:10302-10321	MS.gene82266:intergenic	40.0%
	CATCAGAAGCTCTATAAGAC+CGG	+	42454:10303-10322	MS.gene82266:intergenic	40.0%
	GAATTGTGCATGGAAAGAAC+AGG	-	42454:9738-9757	MS.gene82266:CDS	40.0%
	GTTCATTACTCGACAGTGTT+TGG	-	42454:10123-10142	MS.gene82266:CDS	40.0%
	TAAGTTTGCACGCAGAAGTT+TGG	+	42454:10038-10057	MS.gene82266:intergenic	40.0%
	TGAGTTGTGTAAGGACCTAA+AGG	+	42454:10370-10389	MS.gene82266:intergenic	40.0%
	ATGCTTCACCACCAGATTCT+TGG	+	42454:10081-10100	MS.gene82266:intergenic	45.0%
	CATTACTCGACAGTGTTTGG+AGG	-	42454:10126-10145	MS.gene82266:CDS	45.0%
	CGGTTCAGCTACATTCAGTA+GGG	-	42454:9841-9860	MS.gene82266:CDS	45.0%
	GTATGTGGTGTTTATCTCCC+GGG	+	42454:9967-9986	MS.gene82266:intergenic	45.0%
	TCGGTTCAGCTACATTCAGT+AGG	-	42454:9840-9859	MS.gene82266:CDS	45.0%
	TTCAGTAGGGATGTTCTCGA+TGG	-	42454:9854-9873	MS.gene82266:CDS	45.0%
!!	AGTGCTGATTGTGCTGAACA+CGG	-	42454:9784-9803	MS.gene82266:CDS	45.0%
	ACTTGTCGATAAGCACGACC+CGG	-	42454:9946-9965	MS.gene82266:CDS	50.0%
	GATTGTGCTGAACACGGTCA+TGG	-	42454:9790-9809	MS.gene82266:CDS	50.0%
	GTGCATGGAAAGAACAGGAC+TGG	-	42454:9743-9762	MS.gene82266:CDS	50.0%
	TGAACACGGTCATGGCTGAA+AGG	-	42454:9798-9817	MS.gene82266:CDS	50.0%
	CTTGTCGATAAGCACGACCC+GGG	-	42454:9947-9966	MS.gene82266:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
42454	gene	9653	10398	9653	ID=MS.gene82266
42454	mRNA	9653	10398	9653	ID=MS.gene82266.t1;Parent=MS.gene82266
42454	exon	9653	10398	9653	ID=MS.gene82266.t1.exon1;Parent=MS.gene82266.t1
42454	CDS	9653	10398	9653	ID=cds.MS.gene82266.t1;Parent=MS.gene82266.t1

Gene Sequence

>MS.gene82266

GCTGCCACAGATGGAGAGGATAATAATATTGATGATGACCTCTTGAAATACAGTCAAGATGATGAATATGAAGTATTTGAGCTAAGAATTGTGCATGGAAAGAACAGGACTGGATTTGAAGAAAACAAGGAAGTGCTGATTGTGCTGAACACGGTCATGGCTGAAAGGTACTATGTGACAGATTATCTCGGTTCAGCTACATTCAGTAGGGATGTTCTCGATGGTTGTTTGAAGATTATTAAAAATGACAAGGATTTCTTTCATCAAAGCCTAGATGAAATCAAGCTTCTTAAACTTGTCGATAAGCACGACCCGGGAGATAAACACCACATACTGCGTCTTTATGACTATTTCTACCATCAGGAACATTTATTCATTGTGACCAAACTTCTGCGTGCAAACTTATATGAATTTCAGAAATTCAACCAAGAATCTGGTGGTGAAGCATATTTTACATTGAAGAGATTGCAGTTCATTACTCGACAGTGTTTGGAGGCATTGCAATATTTACATAACTTGGGAATTGTTCACTGTGACCTAAAGCCTGAAAACGTTCTAATCAAAAGTTACAAAAAATGGGAAATCAAAATTATTGATCTTGTAAGCAGTTGCTTTAAAACAGACAATTTGTGTCTATATGTACAATCCCGGTCTTATAGAGCTTCTGATGTGATGTTAGGCCTTCAATATGATGAAAAAATTGATGACAGAACACCTTTAGGTCCTTACACAACTCAATTGATTGA

Protein sequence

>MS.gene82266.t1

AATDGEDNNIDDDLLKYSQDDEYEVFELRIVHGKNRTGFEENKEVLIVLNTVMAERYYVTDYLGSATFSRDVLDGCLKIIKNDKDFFHQSLDEIKLLKLVDKHDPGDKHHILRLYDYFYHQEHLFIVTKLLRANLYEFQKFNQESGGEAYFTLKRLQFITRQCLEALQYLHNLGIVHCDLKPENVLIKSYKKWEIKIIDLVSSCFKTDNLCLYVQSRSYRASDVMLGLQYDEKIDDRTPLGPYTTQLI