AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82409.t1 MTR_4g083680 98.276 174 3 0 1 174 1 174 4.65e-129 359
MS.gene82409.t1 MTR_2g068760 81.600 125 21 1 1 125 1 123 1.55e-72 216
MS.gene82409.t1 MTR_5g083230 73.874 111 29 0 11 121 2 112 1.48e-57 178
MS.gene82409.t1 MTR_3g071590 61.224 147 48 3 5 146 2 144 4.45e-57 176
MS.gene82409.t1 MTR_3g031660 65.000 120 42 0 11 130 3 122 4.92e-57 177
MS.gene82409.t1 MTR_2g093310 63.158 114 42 0 10 123 28 141 3.78e-52 165
MS.gene82409.t1 MTR_4g060950 66.667 111 36 1 14 123 23 133 1.50e-50 161
MS.gene82409.t1 MTR_6g005070 55.797 138 57 2 14 151 8 141 2.70e-49 156
MS.gene82409.t1 MTR_1g095850 67.290 107 35 0 16 122 73 179 1.09e-48 157
MS.gene82409.t1 MTR_3g094690 62.162 111 42 0 14 124 46 156 1.26e-47 155
MS.gene82409.t1 MTR_5g083960 62.727 110 41 0 5 114 29 138 1.84e-47 153
MS.gene82409.t1 MTR_3g077240 65.714 105 36 0 14 118 9 113 2.98e-47 152
MS.gene82409.t1 MTR_4g105170 65.385 104 36 0 14 117 10 113 4.81e-47 152
MS.gene82409.t1 MTR_6g005080 61.905 105 40 0 14 118 9 113 5.17e-47 150
MS.gene82409.t1 MTR_7g033800 64.078 103 37 0 14 116 10 112 6.10e-47 151
MS.gene82409.t1 MTR_3g094690 62.162 111 41 1 14 124 46 155 1.80e-45 149
MS.gene82409.t1 MTR_5g075020 62.097 124 46 1 14 137 42 164 6.39e-44 145
MS.gene82409.t1 MTR_5g075020 62.097 124 46 1 14 137 46 168 6.83e-44 145
MS.gene82409.t1 MTR_3g071420 62.376 101 38 0 12 112 11 111 3.44e-42 139
MS.gene82409.t1 MTR_3g073690 60.784 102 40 0 13 114 7 108 3.71e-42 140
MS.gene82409.t1 MTR_5g017950 63.366 101 37 0 14 114 7 107 1.22e-41 142
MS.gene82409.t1 MTR_5g083010 60.396 101 40 0 12 112 8 108 2.34e-41 137
MS.gene82409.t1 MTR_7g096530 56.481 108 46 1 11 117 10 117 1.56e-40 136
MS.gene82409.t1 MTR_8g040900 65.347 101 35 0 14 114 6 106 2.14e-40 136
MS.gene82409.t1 MTR_3g452660 60.396 101 40 0 14 114 6 106 6.62e-40 137
MS.gene82409.t1 MTR_1g070220 52.137 117 55 1 1 116 1 117 5.75e-39 132
MS.gene82409.t1 MTR_8g036105 54.867 113 48 2 2 113 7 117 7.41e-37 127
MS.gene82409.t1 MTR_7g028905 51.402 107 52 0 14 120 4 110 1.66e-36 123
MS.gene82409.t1 MTR_8g036085 56.566 99 42 1 15 112 23 121 1.35e-35 124
MS.gene82409.t1 MTR_5g093010 53.535 99 46 0 16 114 6 104 1.45e-35 121
MS.gene82409.t1 MTR_7g074990 55.446 101 44 1 15 114 20 120 8.05e-35 122
MS.gene82409.t1 MTR_6g027710 49.074 108 54 1 14 120 39 146 2.14e-34 120
MS.gene82409.t1 MTR_7g096610 52.830 106 49 1 11 115 4 109 2.00e-33 118
MS.gene82409.t1 MTR_1g070205 52.941 102 47 1 15 115 12 113 1.20e-32 116
MS.gene82409.t1 MTR_7g075230 52.632 114 43 3 3 113 8 113 1.41e-31 112
MS.gene82409.t1 MTR_5g080470 50.495 101 49 1 11 110 3 103 1.61e-31 112
MS.gene82409.t1 MTR_8g079660 40.152 132 74 2 15 141 8 139 5.64e-29 107
MS.gene82409.t1 MTR_4g107450 48.000 100 52 0 9 108 4 103 2.39e-28 107
MS.gene82409.t1 MTR_8g079620 42.063 126 70 2 15 137 8 133 4.88e-28 105
MS.gene82409.t1 MTR_6g027700 44.554 101 55 1 15 114 7 107 8.21e-28 103
MS.gene82409.t1 MTR_6g011250 35.821 134 77 3 16 141 10 142 1.34e-26 99.8
MS.gene82409.t1 MTR_6g011230 34.783 138 87 2 16 153 12 146 2.68e-26 99.4
MS.gene82409.t1 MTR_2g100020 38.462 104 64 0 11 114 15 118 4.63e-25 98.2
MS.gene82409.t1 MTR_8g017090 40.385 104 62 0 16 119 13 116 6.13e-25 98.2
MS.gene82409.t1 MTR_6g011200 47.500 80 41 1 16 94 10 89 1.38e-24 96.3
MS.gene82409.t1 MTR_8g079580 46.602 103 54 1 15 116 8 110 1.48e-24 95.5
MS.gene82409.t1 MTR_4g099230 43.617 94 48 2 16 104 3 96 3.64e-23 90.1
MS.gene82409.t1 MTR_5g085390 33.974 156 83 5 16 154 10 162 7.17e-22 88.6
MS.gene82409.t1 MTR_4g088035 38.372 86 53 0 16 101 7 92 9.70e-18 78.6
MS.gene82409.t1 MTR_2g094730 30.392 102 67 3 15 114 2 101 6.12e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82409.t1 AT1G31320 74.713 174 40 2 1 174 1 170 2.61e-73 218
MS.gene82409.t1 AT2G30130 75.229 109 27 0 13 121 6 114 1.01e-57 179
MS.gene82409.t1 AT1G16530 54.237 177 55 6 6 174 5 163 3.34e-57 177
MS.gene82409.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene82409.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene82409.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene82409.t1 AT5G63090 64.286 112 40 0 14 125 10 121 1.36e-49 158
MS.gene82409.t1 AT1G07900 63.636 110 40 0 14 123 32 141 2.46e-48 155
MS.gene82409.t1 AT2G28500 62.162 111 42 0 14 124 54 164 4.00e-47 154
MS.gene82409.t1 AT2G30340 57.377 122 50 1 11 130 48 169 4.57e-47 154
MS.gene82409.t1 AT2G30340 57.851 121 49 1 12 130 50 170 5.29e-47 154
MS.gene82409.t1 AT3G27650 64.356 101 36 0 14 114 38 138 4.78e-46 148
MS.gene82409.t1 AT2G40470 62.281 114 43 0 14 127 19 132 2.78e-45 148
MS.gene82409.t1 AT2G40470 62.281 114 43 0 14 127 44 157 7.07e-45 147
MS.gene82409.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene82409.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene82409.t1 AT2G23660 61.905 105 40 0 12 116 2 106 5.45e-44 148
MS.gene82409.t1 AT5G66870 62.136 103 39 0 12 114 4 106 1.07e-41 142
MS.gene82409.t1 AT3G26660 54.867 113 49 1 16 126 6 118 7.55e-41 134
MS.gene82409.t1 AT3G26620 59.596 99 40 0 16 114 6 104 1.13e-40 134
MS.gene82409.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene82409.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene82409.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene82409.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene82409.t1 AT1G65620 65.347 101 35 0 14 114 8 108 6.64e-40 134
MS.gene82409.t1 AT3G11090 53.226 124 51 1 12 135 8 124 7.91e-40 133
MS.gene82409.t1 AT2G42430 52.174 115 54 1 1 114 1 115 8.36e-39 132
MS.gene82409.t1 AT3G03760 54.630 108 48 1 14 120 50 157 2.28e-37 130
MS.gene82409.t1 AT2G42440 46.565 131 69 1 11 140 3 133 4.34e-36 125
MS.gene82409.t1 AT4G00220 56.731 104 44 1 18 120 20 123 4.76e-36 125
MS.gene82409.t1 AT2G31310 52.830 106 49 1 11 115 3 108 6.06e-36 124
MS.gene82409.t1 AT4G00210 48.344 151 73 3 11 157 7 156 9.99e-36 124
MS.gene82409.t1 AT2G45410 59.794 97 38 1 18 113 19 115 2.36e-33 117
MS.gene82409.t1 AT2G45420 52.885 104 48 1 18 120 40 143 6.44e-33 118
MS.gene82409.t1 AT5G06080 54.639 97 43 1 13 108 5 101 1.31e-32 115
MS.gene82409.t1 AT3G58190 50.980 102 49 1 15 115 11 112 1.05e-31 114
MS.gene82409.t1 AT3G50510 47.059 102 54 0 13 114 10 111 1.62e-28 105
MS.gene82409.t1 AT3G50510 47.059 102 54 0 13 114 10 111 1.62e-28 105
MS.gene82409.t1 AT1G72980 43.269 104 59 0 11 114 9 112 5.09e-28 104
MS.gene82409.t1 AT3G13850 42.453 106 61 0 16 121 37 142 1.72e-27 104
MS.gene82409.t1 AT3G47870 42.453 106 61 0 9 114 30 135 5.66e-27 103
MS.gene82409.t1 AT5G35900 42.424 99 57 0 16 114 6 104 1.64e-24 95.1
MS.gene82409.t1 AT1G06280 38.462 91 56 0 16 106 25 115 1.35e-19 82.0
MS.gene82409.t1 AT2G19820 39.583 96 57 1 14 108 11 106 1.99e-19 79.7
MS.gene82409.t1 AT5G15060 40.449 89 49 2 1 86 3 90 9.89e-18 75.9
MS.gene82409.t1 AT1G36000 28.814 118 84 0 11 128 5 122 1.39e-14 67.0
MS.gene82409.t1 AT4G22700 35.238 105 64 3 12 114 2 104 3.63e-14 67.4
MS.gene82409.t1 AT2G19510 28.571 98 70 0 11 108 5 102 1.47e-12 61.6
MS.gene82409.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5
MS.gene82409.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5
MS.gene82409.t1 AT3G27940 32.432 74 50 0 13 86 3 76 4.77e-11 58.5

Find 42 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAACTGCATCATCATTT+TGG 0.226194 4.4:+29319038 MS.gene82409:CDS
GCTAATGTTCACAAAGTCTT+TGG 0.302464 4.4:+29314544 MS.gene82409:CDS
CAGCTTGTGCTACAGCCAAT+TGG 0.314995 4.4:-29318994 None:intergenic
CCACTATAGGTTGGGCTAGT+TGG 0.351078 4.4:-29319079 None:intergenic
AGCTTGTGCTACAGCCAATT+GGG 0.355950 4.4:-29318993 None:intergenic
ATGCAGTTTGGCGCACCCTT+AGG 0.369688 4.4:-29319027 None:intergenic
CAATGTCAACAAGATGCTTC+AGG 0.375428 4.4:+29314573 MS.gene82409:CDS
AAGCTGAGGCAGTGCACCTA+AGG 0.409283 4.4:+29319011 MS.gene82409:CDS
GGCTCATCAGCAGGGAAGTA+AGG 0.414185 4.4:-29314511 None:intergenic
TCCAAAATGATGATGCAGTT+TGG 0.439033 4.4:-29319039 None:intergenic
AACTTGTGAGGCTCATCAGC+AGG 0.445267 4.4:-29314520 None:intergenic
GCATCCCCTCTTTGATGCTC+AGG 0.446024 4.4:-29318866 None:intergenic
CCAACTAGCCCAACCTATAG+TGG 0.448737 4.4:+29319079 MS.gene82409:CDS
TGATGATGGAGAGCCACTAT+AGG 0.449087 4.4:-29319092 None:intergenic
GACCCTGTGTATGGTTGTGT+GGG 0.491390 4.4:+29318929 MS.gene82409:CDS
ATGGAGAGCCACTATAGGTT+GGG 0.503486 4.4:-29319087 None:intergenic
GATGGAGAGCCACTATAGGT+TGG 0.533235 4.4:-29319088 None:intergenic
TTGAATCACCATAGGCAGCT+TGG 0.540807 4.4:-29319171 None:intergenic
TGATGTGCTACAAACCCAAT+TGG 0.547025 4.4:+29318979 MS.gene82409:CDS
AGACCCTGTGTATGGTTGTG+TGG 0.550798 4.4:+29318928 MS.gene82409:CDS
TAATTAACGAACATGAAAGA+AGG 0.557964 4.4:+29314400 None:intergenic
GCACATCAATCTGTTGCTGA+AGG 0.564578 4.4:-29318964 None:intergenic
GTGGTGGACCAAGCTGCCTA+TGG 0.571014 4.4:+29319163 MS.gene82409:CDS
CTTGCATGCAGCACAAGGTG+AGG 0.585794 4.4:-29314449 None:intergenic
AGAAGCTTGCATGCAGCACA+AGG 0.589929 4.4:-29314454 None:intergenic
AGAGTGAGAGACCCTGTGTA+TGG 0.596799 4.4:+29318920 MS.gene82409:CDS
ACTTACCTGAGCATCAAAGA+GGG 0.599006 4.4:+29318861 MS.gene82409:CDS
CACATCAATCTGTTGCTGAA+GGG 0.604124 4.4:-29318963 None:intergenic
GACTTACCTGAGCATCAAAG+AGG 0.607217 4.4:+29318860 MS.gene82409:CDS
AGCTGAGGCAGTGCACCTAA+GGG 0.612206 4.4:+29319012 MS.gene82409:CDS
TTAACGAACATGAAAGAAGG+TGG 0.619833 4.4:+29314403 None:intergenic
TGAACATTAGCAAACTTGTG+AGG 0.627465 4.4:-29314532 None:intergenic
CCCTGTGTATGGTTGTGTGG+GGG 0.627665 4.4:+29318931 MS.gene82409:CDS
TCACCACATTGAATCACCAT+AGG 0.629809 4.4:-29319179 None:intergenic
ACCCTGTGTATGGTTGTGTG+GGG 0.630122 4.4:+29318930 MS.gene82409:CDS
AGGGGATGCAGTGAGTAGCA+TGG 0.638211 4.4:+29318880 MS.gene82409:CDS
ACGAACATGAAAGAAGGTGG+AGG 0.638440 4.4:+29314406 None:intergenic
ATTGGCTGTAGCACAAGCTG+AGG 0.642416 4.4:+29318997 MS.gene82409:CDS
GGTGGAGGTAACAAGAAGCA+AGG 0.642495 4.4:+29314421 MS.gene82409:CDS
ACTTGTGAGGCTCATCAGCA+GGG 0.650475 4.4:-29314519 None:intergenic
CTTACCTGAGCATCAAAGAG+GGG 0.724679 4.4:+29318862 MS.gene82409:CDS
CTGCCTATGGTGATTCAATG+TGG 0.740247 4.4:+29319176 MS.gene82409:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATATATTAAAAAAA+GGG + chr4.4:29316285-29316304 MS.gene82409:intron 0.0%
!!! TTTTTATATATATTAAAAAA+AGG + chr4.4:29316284-29316303 MS.gene82409:intron 0.0%
!! ATATACTACATTATAATATT+AGG + chr4.4:29314729-29314748 MS.gene82409:intron 10.0%
!! CAAATATAGAAATAAATTAT+TGG + chr4.4:29317469-29317488 MS.gene82409:intron 10.0%
!!! TTAAAAAACATTTTTTCTTT+TGG + chr4.4:29317547-29317566 MS.gene82409:intron 10.0%
!!! TTTTAGAAAAGAAAAAAAAA+AGG + chr4.4:29317337-29317356 MS.gene82409:intron 10.0%
!! ACTGCAAAATTATTATTAAT+TGG - chr4.4:29315857-29315876 None:intergenic 15.0%
!! AGAAATAAATATGAACAATT+TGG - chr4.4:29315641-29315660 None:intergenic 15.0%
!! ATATTCTTTGATTATTATCA+TGG - chr4.4:29315885-29315904 None:intergenic 15.0%
!! CAAAAAATATTAGAAGAATA+AGG - chr4.4:29317294-29317313 None:intergenic 15.0%
!! CTGCAAAATTATTATTAATT+GGG - chr4.4:29315856-29315875 None:intergenic 15.0%
!! TATGTATAATATTAGATAGA+TGG - chr4.4:29314960-29314979 None:intergenic 15.0%
!! TATTCTTTGATTATTATCAT+GGG - chr4.4:29315884-29315903 None:intergenic 15.0%
!!! AATGAAGTATTTTAATGTTA+GGG + chr4.4:29315313-29315332 MS.gene82409:intron 15.0%
!!! ACTTAAAGTGATATTATTTT+TGG + chr4.4:29315756-29315775 MS.gene82409:intron 15.0%
!!! AGTAATTTTTTATTTCCTAA+TGG - chr4.4:29318189-29318208 None:intergenic 15.0%
!!! ATCTTATCTCATTTTTTTAA+GGG - chr4.4:29316583-29316602 None:intergenic 15.0%
!!! CATTATTCATTCATATTTTA+GGG - chr4.4:29317953-29317972 None:intergenic 15.0%
!!! TAATGAAGTATTTTAATGTT+AGG + chr4.4:29315312-29315331 MS.gene82409:intron 15.0%
!!! TATCTTATCTCATTTTTTTA+AGG - chr4.4:29316584-29316603 None:intergenic 15.0%
!!! TATTCTTCTAATATTTTTTG+AGG + chr4.4:29317294-29317313 MS.gene82409:intron 15.0%
!!! TCATTATTCATTCATATTTT+AGG - chr4.4:29317954-29317973 None:intergenic 15.0%
!!! TTAAAATTTTGATACATTGA+GGG + chr4.4:29315373-29315392 MS.gene82409:intron 15.0%
!!! TTTAAAATTTTGATACATTG+AGG + chr4.4:29315372-29315391 MS.gene82409:intron 15.0%
!! AAAAAATGAGATAAGATAAG+AGG + chr4.4:29316586-29316605 MS.gene82409:intron 20.0%
!! AATATATGTCACATATTATG+TGG + chr4.4:29318327-29318346 MS.gene82409:intron 20.0%
!! ACATTGATATTTGATATAGT+TGG - chr4.4:29318776-29318795 None:intergenic 20.0%
!! ATAATATAGGGTAGAAATAA+AGG - chr4.4:29314634-29314653 None:intergenic 20.0%
!! ATATATGTCACATATTATGT+GGG + chr4.4:29318328-29318347 MS.gene82409:intron 20.0%
!! ATCTAGACATTTGATATATA+TGG - chr4.4:29315411-29315430 None:intergenic 20.0%
!! GTCAATTAAAAGAAATGAAT+TGG - chr4.4:29317050-29317069 None:intergenic 20.0%
!! TAATATAGGGTAGAAATAAA+GGG - chr4.4:29314633-29314652 None:intergenic 20.0%
!! TCTAGACATTTGATATATAT+GGG - chr4.4:29315410-29315429 None:intergenic 20.0%
!! TTTCTTCATATTCCAATATT+AGG + chr4.4:29317891-29317910 MS.gene82409:intron 20.0%
!!! AAGATACTTTTCTCAAAAAA+GGG + chr4.4:29317426-29317445 MS.gene82409:intron 20.0%
!!! AATCACTTTTTGACAATTTT+TGG - chr4.4:29316999-29317018 None:intergenic 20.0%
!!! ATTACTTTAGTATTTTGAGA+AGG - chr4.4:29317613-29317632 None:intergenic 20.0%
!!! CATTTCTTTTAATTGACTAT+TGG + chr4.4:29317053-29317072 MS.gene82409:intron 20.0%
!!! GAACAACTTGTTATAATATA+GGG - chr4.4:29314646-29314665 None:intergenic 20.0%
!!! TACCTTTTCTAATTTTTCAA+GGG - chr4.4:29317809-29317828 None:intergenic 20.0%
!!! TCTTCATTTCATTTTCTATT+TGG + chr4.4:29318161-29318180 MS.gene82409:intron 20.0%
!!! TGAACAACTTGTTATAATAT+AGG - chr4.4:29314647-29314666 None:intergenic 20.0%
!!! TTACTTTAGTATTTTGAGAA+GGG - chr4.4:29317612-29317631 None:intergenic 20.0%
!!! TTCACATAACATTGATTAAA+AGG + chr4.4:29315696-29315715 MS.gene82409:intron 20.0%
!!! TTTTCTTAATAAGCATGAAA+TGG - chr4.4:29315533-29315552 None:intergenic 20.0%
! AAAATTAAAGCAAGAACAAG+AGG + chr4.4:29315046-29315065 MS.gene82409:intron 25.0%
! AACCCTTGAAAAATTAGAAA+AGG + chr4.4:29317804-29317823 MS.gene82409:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4.4:29316741-29316760 None:intergenic 25.0%
! AATTCAATGTAATTACGTGT+CGG + chr4.4:29318603-29318622 MS.gene82409:intron 25.0%
! CTAGACATTTGATATATATG+GGG - chr4.4:29315409-29315428 None:intergenic 25.0%
! GTCCATATCAAAAATATGTT+TGG - chr4.4:29319140-29319159 None:intergenic 25.0%
! TAAAAAAAAAGATAGGGAAG+TGG - chr4.4:29315119-29315138 None:intergenic 25.0%
! TGATATCAGTTAACTTAAGT+GGG - chr4.4:29314694-29314713 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4.4:29316753-29316772 MS.gene82409:intron 25.0%
! TTGATATCAGTTAACTTAAG+TGG - chr4.4:29314695-29314714 None:intergenic 25.0%
! TTGATCTCCTTATAAAAATG+TGG + chr4.4:29316125-29316144 MS.gene82409:intron 25.0%
!! ACAAGACTAAGAAAGTTTTA+TGG + chr4.4:29315441-29315460 MS.gene82409:intron 25.0%
!! AGATACTTTTCTCAAAAAAG+GGG + chr4.4:29317427-29317446 MS.gene82409:intron 25.0%
!! CAAATCAAAAAGTATGCATT+AGG + chr4.4:29317980-29317999 MS.gene82409:intron 25.0%
!! CTACCTTTTCTAATTTTTCA+AGG - chr4.4:29317810-29317829 None:intergenic 25.0%
!! CTCATTACCACATTTTTATA+AGG - chr4.4:29316135-29316154 None:intergenic 25.0%
!! GAAGATACTTTTCTCAAAAA+AGG + chr4.4:29317425-29317444 MS.gene82409:intron 25.0%
!! GACATCATTTGATTTAAAAG+TGG + chr4.4:29318697-29318716 MS.gene82409:intron 25.0%
!! GATGATTTTGTGTATATCTT+AGG - chr4.4:29318370-29318389 None:intergenic 25.0%
!! TCTTTTGTACTGAAATAAGA+TGG - chr4.4:29314908-29314927 None:intergenic 25.0%
!!! AATAGTAAAACTAGTTTTGG+AGG + chr4.4:29317719-29317738 MS.gene82409:intron 25.0%
!!! ACATATTTTTGATATGGACA+TGG + chr4.4:29319141-29319160 MS.gene82409:CDS 25.0%
!!! ACCAATAGTAAAACTAGTTT+TGG + chr4.4:29317716-29317735 MS.gene82409:intron 25.0%
!!! CAAATGTGACACTTATTTTT+GGG + chr4.4:29315794-29315813 MS.gene82409:intron 25.0%
!!! CTAGTTTTACTATTGGTTAT+AGG - chr4.4:29317713-29317732 None:intergenic 25.0%
!!! GATTCATTGATTTTTGATGA+TGG - chr4.4:29319109-29319128 None:intergenic 25.0%
!!! TCCAAAACTAGTTTTACTAT+TGG - chr4.4:29317720-29317739 None:intergenic 25.0%
!!! TGCCAAACATATTTTTGATA+TGG + chr4.4:29319135-29319154 MS.gene82409:CDS 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4.4:29316740-29316759 MS.gene82409:intron 25.0%
!!! TTTTTGAGAAAAGTATCTTC+AGG - chr4.4:29317425-29317444 None:intergenic 25.0%
AAAACAATGGAGAGAGAAAA+AGG + chr4.4:29316766-29316785 MS.gene82409:intron 30.0%
AAGGAAACATATTCAATGCT+TGG - chr4.4:29318281-29318300 None:intergenic 30.0%
ATATCAGTTAACTTAAGTGG+GGG - chr4.4:29314692-29314711 None:intergenic 30.0%
ATATTAGGACATGACATTTG+TGG + chr4.4:29314744-29314763 MS.gene82409:intron 30.0%
ATTAGAAGAATAAGGATGTG+TGG - chr4.4:29317286-29317305 None:intergenic 30.0%
GAATATGTAGAAGATAAGAG+TGG - chr4.4:29314608-29314627 None:intergenic 30.0%
GATATCAGTTAACTTAAGTG+GGG - chr4.4:29314693-29314712 None:intergenic 30.0%
GGTAAAATCAACACTCTATT+TGG - chr4.4:29315620-29315639 None:intergenic 30.0%
GTAAGTCCTGCAAATTAATA+AGG - chr4.4:29318847-29318866 None:intergenic 30.0%
TAGAAAAGGTAGAAAAGATG+AGG + chr4.4:29317818-29317837 MS.gene82409:intron 30.0%
TGGACTTTGACAATGAAATA+AGG - chr4.4:29318300-29318319 None:intergenic 30.0%
TGTGACATATATTTGTGACA+TGG - chr4.4:29318320-29318339 None:intergenic 30.0%
TTACTTGGAAAAAACCATTC+TGG - chr4.4:29317779-29317798 None:intergenic 30.0%
TTAGAAGAATAAGGATGTGT+GGG - chr4.4:29317285-29317304 None:intergenic 30.0%
TTCAAGGGTTATTACTTACT+TGG - chr4.4:29317794-29317813 None:intergenic 30.0%
TTCTTATTGCGATAACCAAT+AGG + chr4.4:29318033-29318052 MS.gene82409:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr4.4:29316509-29316528 MS.gene82409:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr4.4:29316359-29316378 None:intergenic 30.0%
TTTCCATTTGAGAAAAAGAC+AGG + chr4.4:29317396-29317415 MS.gene82409:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr4.4:29316508-29316527 MS.gene82409:intron 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr4.4:29316360-29316379 None:intergenic 30.0%
! ACTTACTTATTGTCACTTCA+GGG - chr4.4:29315266-29315285 None:intergenic 30.0%
! CTACTGCACACAATTATTTT+GGG - chr4.4:29315565-29315584 None:intergenic 30.0%
! TACTTACTTATTGTCACTTC+AGG - chr4.4:29315267-29315286 None:intergenic 30.0%
! TCACATTGCAATTCTTTTTG+TGG + chr4.4:29317676-29317695 MS.gene82409:intron 30.0%
!! ACTTGTCCTTATTAATTTGC+AGG + chr4.4:29318838-29318857 MS.gene82409:intron 30.0%
!! AGACTAAGAAAGTTTTATGG+TGG + chr4.4:29315444-29315463 MS.gene82409:intron 30.0%
!! ATTTTGATAGAGACTAGAGA+AGG - chr4.4:29318801-29318820 None:intergenic 30.0%
!! GCAAATGTGACACTTATTTT+TGG + chr4.4:29315793-29315812 MS.gene82409:intron 30.0%
!! TATTTTTGATATGGACATGG+TGG + chr4.4:29319144-29319163 MS.gene82409:CDS 30.0%
AAACCAAAATTCTTTGGTCC+TGG + chr4.4:29317225-29317244 MS.gene82409:intron 35.0%
AGATGAGACAGACCTAATAT+TGG - chr4.4:29317906-29317925 None:intergenic 35.0%
ATTTCTTAACATGTGCCCTA+AGG + chr4.4:29317570-29317589 MS.gene82409:intron 35.0%
CAATATTAGACAACTTCACG+TGG - chr4.4:29318246-29318265 None:intergenic 35.0%
CAATGATAATAGATGGTGTC+GGG - chr4.4:29316058-29316077 None:intergenic 35.0%
CATAAATGCCCACATATGTA+CGG + chr4.4:29318463-29318482 MS.gene82409:intron 35.0%
CCAAAATAATTGTGTGCAGT+AGG + chr4.4:29315563-29315582 MS.gene82409:intron 35.0%
CTACTCAATTTCAGCTACAA+TGG + chr4.4:29316029-29316048 MS.gene82409:intron 35.0%
GCAATGATAATAGATGGTGT+CGG - chr4.4:29316059-29316078 None:intergenic 35.0%
GCTAATGTTCACAAAGTCTT+TGG + chr4.4:29314544-29314563 MS.gene82409:CDS 35.0%
GTACATATGTGGGCATTTAT+GGG - chr4.4:29318464-29318483 None:intergenic 35.0%
GTGACCAAACCAAAATTCTT+TGG + chr4.4:29317219-29317238 MS.gene82409:intron 35.0%
TACATATGTGGGCATTTATG+GGG - chr4.4:29318463-29318482 None:intergenic 35.0%
TAGAAGAATAAGGATGTGTG+GGG - chr4.4:29317284-29317303 None:intergenic 35.0%
TCATCTAACCGTACATATGT+GGG - chr4.4:29318474-29318493 None:intergenic 35.0%
TGAACATTAGCAAACTTGTG+AGG - chr4.4:29314535-29314554 None:intergenic 35.0%
TGTGTTTATAGGTCTTTGCA+GGG + chr4.4:29318658-29318677 MS.gene82409:intron 35.0%
TTAGGGACTAAAGTGACTAA+CGG + chr4.4:29316401-29316420 MS.gene82409:intron 35.0%
TTCGCTGCAATGATAATAGA+TGG - chr4.4:29316065-29316084 None:intergenic 35.0%
TTGGAAAAAACCATTCTGGT+TGG - chr4.4:29317775-29317794 None:intergenic 35.0%
TTTCTTAACATGTGCCCTAA+GGG + chr4.4:29317571-29317590 MS.gene82409:intron 35.0%
! AAAAAACCATTCTGGTTGGT+TGG - chr4.4:29317771-29317790 None:intergenic 35.0%
! AATGATAATAGATGGTGTCG+GGG - chr4.4:29316057-29316076 None:intergenic 35.0%
! AGATCTTGCGTTTGTGTTTT+TGG - chr4.4:29318144-29318163 None:intergenic 35.0%
! ATCTATTTGATGGCTATGTG+GGG + chr4.4:29315078-29315097 MS.gene82409:intron 35.0%
! ATTAGGTCTGTCTCATCTTT+TGG + chr4.4:29317908-29317927 MS.gene82409:intron 35.0%
! ATTTTCTATTTGGCGCCATT+AGG + chr4.4:29318171-29318190 MS.gene82409:intron 35.0%
! CCTACTGCACACAATTATTT+TGG - chr4.4:29315566-29315585 None:intergenic 35.0%
! GATCTATTTGATGGCTATGT+GGG + chr4.4:29315077-29315096 MS.gene82409:intron 35.0%
! TAGCCTGTCTTTTTCTCAAA+TGG - chr4.4:29317402-29317421 None:intergenic 35.0%
! TCCAAAATGATGATGCAGTT+TGG - chr4.4:29319042-29319061 None:intergenic 35.0%
! TCCTTGCATGGTCAATTTTA+GGG + chr4.4:29316384-29316403 MS.gene82409:intron 35.0%
!!! AGGACCAAAGAATTTTGGTT+TGG - chr4.4:29317226-29317245 None:intergenic 35.0%
!!! GACACTTATTTTTGGGTAGA+GGG + chr4.4:29315801-29315820 MS.gene82409:intron 35.0%
!!! TGACACTTATTTTTGGGTAG+AGG + chr4.4:29315800-29315819 MS.gene82409:intron 35.0%
AAGGAAGAGAAACACTTGTG+TGG - chr4.4:29317252-29317271 None:intergenic 40.0%
AAGGGGAAGACACAAGTTAA+TGG + chr4.4:29317444-29317463 MS.gene82409:intron 40.0%
AATAAGGATGTGTGGGGATA+TGG - chr4.4:29317278-29317297 None:intergenic 40.0%
ACCATTCATTTCTCCACCTT+GGG + chr4.4:29318417-29318436 MS.gene82409:intron 40.0%
ACGAACGAAGTTTGCATTCA+GGG + chr4.4:29316448-29316467 MS.gene82409:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr4.4:29316416-29316435 MS.gene82409:intron 40.0%
ACTTACCTGAGCATCAAAGA+GGG + chr4.4:29318861-29318880 MS.gene82409:CDS 40.0%
ACTTTAGTCCCTGAATCTGA+AGG - chr4.4:29316551-29316570 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr4.4:29316776-29316795 MS.gene82409:intron 40.0%
AGTCACTTAAGTCCCTGAAT+GGG + chr4.4:29316313-29316332 MS.gene82409:intron 40.0%
AGTTAACCAATTAACGCCAC+CGG - chr4.4:29316626-29316645 None:intergenic 40.0%
ATTGCAAAACAGTCCTTGCA+TGG + chr4.4:29316372-29316391 MS.gene82409:intron 40.0%
CAACTGTCATAGTTATCCTG+AGG - chr4.4:29315509-29315528 None:intergenic 40.0%
CAATGTCAACAAGATGCTTC+AGG + chr4.4:29314573-29314592 MS.gene82409:CDS 40.0%
CACATCAATCTGTTGCTGAA+GGG - chr4.4:29318966-29318985 None:intergenic 40.0%
CCAATAGGAGTTTGTAAACG+TGG + chr4.4:29318048-29318067 MS.gene82409:intron 40.0%
CCACGTTTACAAACTCCTAT+TGG - chr4.4:29318051-29318070 None:intergenic 40.0%
CGTACATATGTGGGCATTTA+TGG - chr4.4:29318465-29318484 None:intergenic 40.0%
CTGTGTTTATAGGTCTTTGC+AGG + chr4.4:29318657-29318676 MS.gene82409:intron 40.0%
CTTCACGTGGTGTATATAGA+AGG - chr4.4:29318233-29318252 None:intergenic 40.0%
CTTTAGTCCCTGAATCTGAA+GGG - chr4.4:29316550-29316569 None:intergenic 40.0%
GTATTGTTCTGATTCACCTC+AGG + chr4.4:29315490-29315509 MS.gene82409:intron 40.0%
GTCATCTAACCGTACATATG+TGG - chr4.4:29318475-29318494 None:intergenic 40.0%
TAAAGCAAGAACAAGAGGCA+GGG + chr4.4:29315051-29315070 MS.gene82409:intron 40.0%
TAGTCACTTAAGTCCCTGAA+TGG + chr4.4:29316312-29316331 MS.gene82409:intron 40.0%
TCACCACATTGAATCACCAT+AGG - chr4.4:29319182-29319201 None:intergenic 40.0%
TCCCTAAAATTGACCATGCA+AGG - chr4.4:29316388-29316407 None:intergenic 40.0%
TGATGTGCTACAAACCCAAT+TGG + chr4.4:29318979-29318998 MS.gene82409:CDS 40.0%
TTAAAGCAAGAACAAGAGGC+AGG + chr4.4:29315050-29315069 MS.gene82409:intron 40.0%
TTGACCGAGAAAATCTTGTG+TGG + chr4.4:29317084-29317103 MS.gene82409:intron 40.0%
TTGGGTAGAGGGAGTAAATT+AGG + chr4.4:29315812-29315831 MS.gene82409:intron 40.0%
! ACACAAGATTTTCTCGGTCA+AGG - chr4.4:29317085-29317104 None:intergenic 40.0%
! AGGACCACACAAGATTTTCT+CGG - chr4.4:29317091-29317110 None:intergenic 40.0%
! ATGTAATTACGTGTCGGTCT+CGG + chr4.4:29318609-29318628 MS.gene82409:intron 40.0%
! GCCAAACTGCATCATCATTT+TGG + chr4.4:29319038-29319057 MS.gene82409:CDS 40.0%
! GGATCTATTTGATGGCTATG+TGG + chr4.4:29315076-29315095 MS.gene82409:intron 40.0%
! GTCCTTGCATGGTCAATTTT+AGG + chr4.4:29316383-29316402 MS.gene82409:intron 40.0%
! TTTTGATATGGACATGGTGG+TGG + chr4.4:29319147-29319166 MS.gene82409:CDS 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG - chr4.4:29317588-29317607 None:intergenic 40.0%
!! GGAGGAGTATCTGTGTTTAT+AGG + chr4.4:29318647-29318666 MS.gene82409:intron 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG - chr4.4:29317589-29317608 None:intergenic 40.0%
!! TTTTAGGGATCACATGCACA+TGG - chr4.4:29317938-29317957 None:intergenic 40.0%
!!! CATCATTTTGGAACAGTGCA+GGG + chr4.4:29319050-29319069 MS.gene82409:CDS 40.0%
!!! TCATCATTTTGGAACAGTGC+AGG + chr4.4:29319049-29319068 MS.gene82409:CDS 40.0%
AAAGATAGGGAAGTGGCATG+TGG - chr4.4:29315112-29315131 None:intergenic 45.0%
AAAGCAAGAACAAGAGGCAG+GGG + chr4.4:29315052-29315071 MS.gene82409:intron 45.0%
AAATACCACTTGTGTGGACC+AGG - chr4.4:29317111-29317130 None:intergenic 45.0%
AACGATGTGAGGTTTGAACG+CGG - chr4.4:29317853-29317872 None:intergenic 45.0%
AAGATAGGGAAGTGGCATGT+GGG - chr4.4:29315111-29315130 None:intergenic 45.0%
ACCAAACCAACCAACCAGAA+TGG + chr4.4:29317762-29317781 MS.gene82409:intron 45.0%
AGAGGAATGCAAGCAAACTC+CGG + chr4.4:29316604-29316623 MS.gene82409:intron 45.0%
AGCTTGTGCTACAGCCAATT+GGG - chr4.4:29318996-29319015 None:intergenic 45.0%
ATGGAGAGCCACTATAGGTT+GGG - chr4.4:29319090-29319109 None:intergenic 45.0%
ATGTGTGGGGATATGGTCTA+AGG - chr4.4:29317271-29317290 None:intergenic 45.0%
CACCATTCATTTCTCCACCT+TGG + chr4.4:29318416-29318435 MS.gene82409:intron 45.0%
CAGAGAAGAGAACAGAGAGA+AGG + chr4.4:29317181-29317200 MS.gene82409:intron 45.0%
CCATTCATTTCTCCACCTTG+GGG + chr4.4:29318418-29318437 MS.gene82409:intron 45.0%
CTGCCTATGGTGATTCAATG+TGG + chr4.4:29319176-29319195 MS.gene82409:CDS 45.0%
CTTACCTGAGCATCAAAGAG+GGG + chr4.4:29318862-29318881 MS.gene82409:CDS 45.0%
GACGAACGAAGTTTGCATTC+AGG + chr4.4:29316447-29316466 MS.gene82409:intron 45.0%
GACGAATCCCTTCAGATTCA+GGG + chr4.4:29316540-29316559 MS.gene82409:intron 45.0%
GACTAACGGAGTCTACATTC+AGG + chr4.4:29316415-29316434 MS.gene82409:intron 45.0%
GACTTACCTGAGCATCAAAG+AGG + chr4.4:29318860-29318879 MS.gene82409:CDS 45.0%
GAGAAAATCTTGTGTGGTCC+TGG + chr4.4:29317090-29317109 MS.gene82409:intron 45.0%
GCACATCAATCTGTTGCTGA+AGG - chr4.4:29318967-29318986 None:intergenic 45.0%
GCAGACAAAGAAACGATGTG+AGG - chr4.4:29317864-29317883 None:intergenic 45.0%
GTGACCAAATACCACTTGTG+TGG - chr4.4:29317117-29317136 None:intergenic 45.0%
TATGTGGGCATTTATGGGGA+CGG - chr4.4:29318459-29318478 None:intergenic 45.0%
TGACGAATCCCTTCAGATTC+AGG + chr4.4:29316539-29316558 MS.gene82409:intron 45.0%
TGGTCCACACAAGTGGTATT+TGG + chr4.4:29317110-29317129 MS.gene82409:intron 45.0%
TTGAATCACCATAGGCAGCT+TGG - chr4.4:29319174-29319193 None:intergenic 45.0%
! ACCATTCTGGTTGGTTGGTT+TGG - chr4.4:29317766-29317785 None:intergenic 45.0%
! GGACCAGGACCAAAGAATTT+TGG - chr4.4:29317231-29317250 None:intergenic 45.0%
! TGTGCATGACCCTGACTTTT+GGG - chr4.4:29318082-29318101 None:intergenic 45.0%
! TTGTGCATGACCCTGACTTT+TGG - chr4.4:29318083-29318102 None:intergenic 45.0%
!! TGATGATGGAGAGCCACTAT+AGG - chr4.4:29319095-29319114 None:intergenic 45.0%
!! TTTGGTGTGGACATGGCTTT+TGG - chr4.4:29317748-29317767 None:intergenic 45.0%
!! AATATATAAAAAAAAAGATA+GGG - chr4.4:29315125-29315144 None:intergenic 5.0%
!! TAATATATAAAAAAAAAGAT+AGG - chr4.4:29315126-29315145 None:intergenic 5.0%
!! TTTATATATATTAAAAAAAG+GGG + chr4.4:29316286-29316305 MS.gene82409:intron 5.0%
AACTTGTGAGGCTCATCAGC+AGG - chr4.4:29314523-29314542 None:intergenic 50.0%
ACCCTGTGTATGGTTGTGTG+GGG + chr4.4:29318930-29318949 MS.gene82409:CDS 50.0%
ACTTGTGAGGCTCATCAGCA+GGG - chr4.4:29314522-29314541 None:intergenic 50.0%
AGAAGCTTGCATGCAGCACA+AGG - chr4.4:29314457-29314476 None:intergenic 50.0%
AGACCCTGTGTATGGTTGTG+TGG + chr4.4:29318928-29318947 MS.gene82409:CDS 50.0%
AGAGTGAGAGACCCTGTGTA+TGG + chr4.4:29318920-29318939 MS.gene82409:CDS 50.0%
AGATAGGGAAGTGGCATGTG+GGG - chr4.4:29315110-29315129 None:intergenic 50.0%
ATGGGAAAATCTCCCCAAGG+TGG - chr4.4:29318433-29318452 None:intergenic 50.0%
ATGTGGGCATTTATGGGGAC+GGG - chr4.4:29318458-29318477 None:intergenic 50.0%
ATTGGCTGTAGCACAAGCTG+AGG + chr4.4:29318997-29319016 MS.gene82409:CDS 50.0%
CAAACTCCGGTGGCGTTAAT+TGG + chr4.4:29316617-29316636 MS.gene82409:intron 50.0%
CACTTGTCACAACGACACGT+TGG - chr4.4:29316096-29316115 None:intergenic 50.0%
CAGCTTGTGCTACAGCCAAT+TGG - chr4.4:29318997-29319016 None:intergenic 50.0%
CATTTATGGGGACGGGACAT+GGG - chr4.4:29318451-29318470 None:intergenic 50.0%
CCAACTAGCCCAACCTATAG+TGG + chr4.4:29319079-29319098 MS.gene82409:CDS 50.0%
CCCCAAGGTGGAGAAATGAA+TGG - chr4.4:29318421-29318440 None:intergenic 50.0%
CTTAAGTCCCTGAATGGGAG+AGG + chr4.4:29316318-29316337 MS.gene82409:intron 50.0%
GACATGGGAAAATCTCCCCA+AGG - chr4.4:29318436-29318455 None:intergenic 50.0%
GACCCTGTGTATGGTTGTGT+GGG + chr4.4:29318929-29318948 MS.gene82409:CDS 50.0%
GACGAATCCTCTCCCATTCA+GGG - chr4.4:29316328-29316347 None:intergenic 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr4.4:29317246-29317265 None:intergenic 50.0%
GATGGAGAGCCACTATAGGT+TGG - chr4.4:29319091-29319110 None:intergenic 50.0%
GGTGGAGGTAACAAGAAGCA+AGG + chr4.4:29314421-29314440 MS.gene82409:CDS 50.0%
GTATTGCCCCCCAAAAGTCA+GGG + chr4.4:29318070-29318089 MS.gene82409:intron 50.0%
TCTCGGACACTGAAAGTTGG+AGG + chr4.4:29318626-29318645 MS.gene82409:intron 50.0%
TTAGATGACCCTGCAGGACA+GGG + chr4.4:29318486-29318505 MS.gene82409:intron 50.0%
! GTGCATGACCCTGACTTTTG+GGG - chr4.4:29318081-29318100 None:intergenic 50.0%
! TGCATGACCCTGACTTTTGG+GGG - chr4.4:29318080-29318099 None:intergenic 50.0%
!! CCACTATAGGTTGGGCTAGT+TGG - chr4.4:29319082-29319101 None:intergenic 50.0%
!! TCTGGTTGGTTGGTTTGGTG+TGG - chr4.4:29317761-29317780 None:intergenic 50.0%
!! TGGTTGGTTTGGTGTGGACA+TGG - chr4.4:29317755-29317774 None:intergenic 50.0%
AAGCTGAGGCAGTGCACCTA+AGG + chr4.4:29319011-29319030 MS.gene82409:CDS 55.0%
AGCTGAGGCAGTGCACCTAA+GGG + chr4.4:29319012-29319031 MS.gene82409:CDS 55.0%
AGGGGATGCAGTGAGTAGCA+TGG + chr4.4:29318880-29318899 MS.gene82409:CDS 55.0%
ATGCAGTTTGGCGCACCCTT+AGG - chr4.4:29319030-29319049 None:intergenic 55.0%
CATCATACCCCTGTCCTGCA+GGG - chr4.4:29318497-29318516 None:intergenic 55.0%
CCCCCACACAACCATACACA+GGG - chr4.4:29318934-29318953 None:intergenic 55.0%
CCCTGTGTATGGTTGTGTGG+GGG + chr4.4:29318931-29318950 MS.gene82409:CDS 55.0%
CGACGAATCCTCTCCCATTC+AGG - chr4.4:29316329-29316348 None:intergenic 55.0%
CGGACACTGAAAGTTGGAGG+AGG + chr4.4:29318629-29318648 MS.gene82409:intron 55.0%
CGGTCTCGGACACTGAAAGT+TGG + chr4.4:29318623-29318642 MS.gene82409:intron 55.0%
CTTGCATGCAGCACAAGGTG+AGG - chr4.4:29314452-29314471 None:intergenic 55.0%
GCAGGGGCGGATCTATTTGA+TGG + chr4.4:29315068-29315087 MS.gene82409:intron 55.0%
GCATCCCCTCTTTGATGCTC+AGG - chr4.4:29318869-29318888 None:intergenic 55.0%
GCATTTATGGGGACGGGACA+TGG - chr4.4:29318452-29318471 None:intergenic 55.0%
GGAATGCAAGCAAACTCCGG+TGG + chr4.4:29316607-29316626 MS.gene82409:intron 55.0%
GGCTCATCAGCAGGGAAGTA+AGG - chr4.4:29314514-29314533 None:intergenic 55.0%
GGTATTGCCCCCCAAAAGTC+AGG + chr4.4:29318069-29318088 MS.gene82409:intron 55.0%
GTACGGTTAGATGACCCTGC+AGG + chr4.4:29318480-29318499 MS.gene82409:intron 55.0%
GTTAGATGACCCTGCAGGAC+AGG + chr4.4:29318485-29318504 MS.gene82409:intron 55.0%
TAGATGACCCTGCAGGACAG+GGG + chr4.4:29318487-29318506 MS.gene82409:intron 55.0%
! GCATGACCCTGACTTTTGGG+GGG - chr4.4:29318079-29318098 None:intergenic 55.0%
GCAAGAACAAGAGGCAGGGG+CGG + chr4.4:29315055-29315074 MS.gene82409:intron 60.0%
GCATCATACCCCTGTCCTGC+AGG - chr4.4:29318498-29318517 None:intergenic 60.0%
GCCCCCACACAACCATACAC+AGG - chr4.4:29318935-29318954 None:intergenic 60.0%
GTGGTCCTGGTCCACACAAG+TGG + chr4.4:29317103-29317122 MS.gene82409:intron 60.0%
!! GTGGTGGACCAAGCTGCCTA+TGG + chr4.4:29319163-29319182 MS.gene82409:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 29314412 29319201 29314412 ID=MS.gene82409
chr4.4 mRNA 29314412 29319201 29314412 ID=MS.gene82409.t1;Parent=MS.gene82409
chr4.4 exon 29314412 29314594 29314412 ID=MS.gene82409.t1.exon1;Parent=MS.gene82409.t1
chr4.4 CDS 29314412 29314594 29314412 ID=cds.MS.gene82409.t1;Parent=MS.gene82409.t1
chr4.4 exon 29318860 29319201 29318860 ID=MS.gene82409.t1.exon2;Parent=MS.gene82409.t1
chr4.4 CDS 29318860 29319201 29318860 ID=cds.MS.gene82409.t1;Parent=MS.gene82409.t1
Gene Sequence

>MS.gene82409

ATGAAAGAAGGTGGAGGTAACAAGAAGCAAGGTGCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCAGAAGAAGATGTGCTCAAGATTGTCTCTTTGCTCCTTACTTCCCTGCTGATGAGCCTCACAAGTTTGCTAATGTTCACAAAGTCTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGTAATTCATTCCACTCTTATCTTCTACATATTCAACCCTTTATTTCTACCCTATATTATAACAAGTTGTTCAATTAATGCTATTACTTTTGTCACCCCCACTTAAGTTAACTGATATCAATTCTTACTCTATTCATATACTACATTATAATATTAGGACATGACATTTGTGGTACTGTAGTTGTAATAAGACTGATGCGACAAAATACTATTTTCAGAATAGATTTAAATTTTTCAGTTTTAATTACAACTATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAAAAATATGAAAATTCCATCTTATTTCAGTACAAAAGAAGATGAAATCACTTTTTTTTTCTTCTTTTCCATCTATCTAATATTATACATATAACTTTGAAAATAAGAAAGATTATAAAGATGAGATGAGATGAGACGATACGATATCTATGTAAATAAAATTAAAGCAAGAACAAGAGGCAGGGGCGGATCTATTTGATGGCTATGTGGGGCTAAAGCCCCACATGCCACTTCCCTATCTTTTTTTTTATATATTATAAAAACGATAATAGTCACTTTGAACTCTGAATGTGTAATAAGTAGTTATAATAGTTTCTTAATGTATTAAAATTTTAAAATAGTTCTTGATTTTGTATTTTGTTAGTCATAATAGTCCCTGAAGTGACAATAAGTAAGTATATTGAAAGACTAATATAACAATATTAATGAAGTATTTTAATGTTAGGGACTATTTTGATTAACGACGTGTACAATCAGAGAAAATTTAAAATTTTGATACATTGAGGGACTATTTTAGCCCCATATATATCAAATGTCTAGATCTGTCACTGAACAAGACTAAGAAAGTTTTATGGTGGTATCATATCAAATAAATACTGATGTATTGTTCTGATTCACCTCAGGATAACTATGACAGTTGACCATTTCATGCTTATTAAGAAAATATGATCGTCCCAAAATAATTGTGTGCAGTAGGCAACTTCACACATGATAAGAAAGATGATAAACCAAATAGAGTGTTGATTTTACCAAATTGTTCATATTTATTTCTATAATTTGTAAATAATAATAATAATTTGAGAGTGATTCACATAACATTGATTAAAAGGTACAAAAGAAAAATAAACAATTAAAGTTACATTGAAAACTTAAAGTGATATTATTTTTGGAACAAATTATTTTCGCAAATGTGACACTTATTTTTGGGTAGAGGGAGTAAATTAGGAAGAAAATGATGATTTTACCCAATTAATAATAATTTTGCAGTGATGCCCATGATAATAATCAAAGAATATAATTGAAAAATAGCAATGAAAATTACATTAAAAAAAAACTAAAAGTTGCACTCTTTTTGAGACATTTTTTTTTTCAAATGCGACAATTATTATTAAATAAAAAGAGTAGTTGTATAGATCAATTCTACTCAATTTCAGCTACAATGGTTCCCCGACACCATCTATTATCATTGCAGCGAAAGATAAAACCAACGTGTCGTTGTGACAAGTGATAAGAGATTTGATCTCCTTATAAAAATGTGGTAATGAGTTTGATTTTTAATTTGTGTGTAATAAAAAAATCTGATTGAAAGAGAAAAAAAAAATCAATTTATGTGTCTAATAAGTTGTCGAATTGACATTATGACTGTTATATTTATTATATATTGCTCACAAATAATTTTTATATATATTAAAAAAAGGGGAATTAGTCACTTAAGTCCCTGAATGGGAGAGGATTCGTCGCTTTAGTCCCTGAATGAAGAGAAATTGCAAAACAGTCCTTGCATGGTCAATTTTAGGGACTAAAGTGACTAACGGAGTCTACATTCAGGGACTAAATTGACGAACGAAGTTTGCATTCAGGGACTAAATTGACTAACAAAGTCTACATTCAGAGACTATTTTGCAATTTATCTGCATTCAGGGACTAAAGTGACGAATCCCTTCAGATTCAGGGACTAAAGTGACTAATTTCCCTTAAAAAAATGAGATAAGATAAGAGGAATGCAAGCAAACTCCGGTGGCGTTAATTGGTTAACTCAGCACATGTTGATAACAATGATAAGTATGTTTATATTTTTTTCTTGAGTAATGATATTTTGACATCTATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAATATCATGTGAGTATGAGAGAGAATAAGTATGTTTATATTTTTTTCTTGAGTAATGATATTTTGACATCTATTTGATGACAACTTTGTTGACAACCTTGTTTTTCTCACTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAACAATATCATGTGAGTATGAGAGAGAAAGTTGTCCAAAAATTGTCAAAAAGTGATTGTCAAAATATCATTTCTCTTTTTTCTTTCCAATTCATTTCTTTTAATTGACTATTGGCGCTTTCCTTGACCGAGAAAATCTTGTGTGGTCCTGGTCCACACAAGTGGTATTTGGTCACACAAAAAGAAAAAAGAGAAGAGAGAAGAGAGAGAAAATGAAGAACAGAGAAGAGAACAGAGAGAAGGAAAAAACTTGTGTGTGTGACCAAACCAAAATTCTTTGGTCCTGGTCCACACAAGTGTTTCTCTTCCTTAGACCATATCCCCACACATCCTTATTCTTCTAATATTTTTTGAGGCACATATTCTTCTAACTTCTTTTTAGAAAAGAAAAAAAAAAGGTTTAACATGATTGATTTTTAATTTTGTAGTTCAATTTTTCCATTTGAGAAAAAGACAGGCTACCTGAAGATACTTTTCTCAAAAAAGGGGAAGACACAAGTTAATGGTTCAAATATAGAAATAAATTATTGGAATGTGTGCATTTTATTTAGTCTTTAACTTTTAAATGCATTGAATGCACAAAATTTTAAAAAACATTTTTTCTTTTGGATTTCTTAACATGTGCCCTAAGGGCACAAGTTAACACTACCCTTCTCAAAATACTAAAGTAATTCAAATGAAATTTATTTATTTATGCATCATACACATAACACATTCACATTGCAATTCTTTTTGTGGATTTTAATTTTCCTATAACCAATAGTAAAACTAGTTTTGGAGGTAACCAAAAGCCATGTCCACACCAAACCAACCAACCAGAATGGTTTTTTCCAAGTAAGTAATAACCCTTGAAAAATTAGAAAAGGTAGAAAAGATGAGGCATTCTCAGCCGCGTTCAAACCTCACATCGTTTCTTTGTCTGCTTTTTCATTTCTTCATATTCCAATATTAGGTCTGTCTCATCTTTTGGTCTGCCATGTGCATGTGATCCCTAAAATATGAATGAATAATGAATAAGACAAATCAAAAAGTATGCATTAGGAATAGCATTACATTATTTCTTTAATTCATTTTCTTATTGCGATAACCAATAGGAGTTTGTAAACGTGGTATTGCCCCCCAAAAGTCAGGGTCATGCACAAATTAGTAACTTACTAACAAGCAACGAGATTTTGAGAAACCAAAAACACAAACGCAAGATCTTCATTTCATTTTCTATTTGGCGCCATTAGGAAATAAAAAATTACTACTCAAATAACATAACATTATCCTTCTATATACACCACGTGAAGTTGTCTAATATTGTCAATTTTTTATCCAAGCATTGAATATGTTTCCTTATTTCATTGTCAAAGTCCATGTCACAAATATATGTCACATATTATGTGGGATTTAAATTAGATACACCTAAGATATACACAAAATCATCAACCATACAAAATTCTCCCCACCTGTCACCATTCATTTCTCCACCTTGGGGAGATTTTCCCATGTCCCGTCCCCATAAATGCCCACATATGTACGGTTAGATGACCCTGCAGGACAGGGGTATGATGCAGACATGTAGTATTTGCTTACGAAGCATGAATACAGACATGAACACTGACACGTCGATATTTATAATAATTTAATAAAATCATATAATTCAATGTAATTACGTGTCGGTCTCGGACACTGAAAGTTGGAGGAGGAGTATCTGTGTTTATAGGTCTTTGCAGGGAATAAGAATACAAATTGACATCATTTGATTTAAAAGTGGATTAGTAAAGTCGAAATATGAATCATTTGATTTTGATTTATTGATATAGATATCCAACTATATCAAATATCAATGTCACCTTCTCTAGTCTCTATCAAAATCTAATATTCACGTAATTACTTGTCCTTATTAATTTGCAGGACTTACCTGAGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAAGCTAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTGGGGGCAATTTCGTCCCTTCAGCAACAGATTGATGTGCTACAAACCCAATTGGCTGTAGCACAAGCTGAGGCAGTGCACCTAAGGGTGCGCCAAACTGCATCATCATTTTGGAACAGTGCAGGGCATAGTCCAACTAGCCCAACCTATAGTGGCTCTCCATCATCAAAAATCAATGAATCACAACATGCCAAACATATTTTTGATATGGACATGGTGGTGGACCAAGCTGCCTATGGTGATTCAATGTGGTGA
Protein sequence

>MS.gene82409.t1

MKEGGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTASSFWNSAGHSPTSPTYSGSPSSKINESQHAKHIFDMDMVVDQAAYGDSMW