AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82579

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82579.t1 MTR_6g084120 93.227 251 5 2 1 251 25 263 8.23e-176 484
MS.gene82579.t1 MTR_7g053410 61.062 113 43 1 102 214 286 397 1.64e-37 138
MS.gene82579.t1 MTR_7g053410 61.062 113 43 1 102 214 286 397 2.71e-37 137
MS.gene82579.t1 MTR_8g012290 62.136 103 39 0 112 214 269 371 7.57e-36 133
MS.gene82579.t1 MTR_8g012290 62.136 103 39 0 112 214 269 371 8.55e-36 133
MS.gene82579.t1 MTR_5g037250 54.918 122 44 3 95 206 64 184 2.80e-35 126
MS.gene82579.t1 MTR_3g498825 64.894 94 32 1 125 217 138 231 1.01e-34 127
MS.gene82579.t1 MTR_8g065740 58.559 111 44 1 103 213 276 384 3.63e-34 128
MS.gene82579.t1 MTR_3g116770 46.405 153 69 2 76 217 122 272 6.48e-34 126
MS.gene82579.t1 MTR_5g048860 63.366 101 36 1 115 214 345 445 6.62e-34 128
MS.gene82579.t1 MTR_3g116770 46.405 153 69 2 76 217 122 272 6.65e-34 126
MS.gene82579.t1 MTR_4g070320 71.951 82 23 0 130 211 139 220 1.30e-33 124
MS.gene82579.t1 MTR_8g099880 62.766 94 34 1 125 217 136 229 2.74e-33 123
MS.gene82579.t1 MTR_8g062240 40.625 192 71 6 68 220 60 247 7.30e-33 121
MS.gene82579.t1 MTR_1g017350 60.000 100 39 1 115 213 240 339 1.12e-32 123
MS.gene82579.t1 MTR_1g017350 60.000 100 39 1 115 213 240 339 1.16e-32 123
MS.gene82579.t1 MTR_1g017350 60.000 100 39 1 115 213 240 339 1.25e-32 123
MS.gene82579.t1 MTR_1g017350 60.000 100 39 1 115 213 240 339 1.28e-32 123
MS.gene82579.t1 MTR_1g059270 67.500 80 26 0 132 211 158 237 8.00e-32 117
MS.gene82579.t1 MTR_1g059270 67.500 80 26 0 132 211 158 237 2.03e-31 118
MS.gene82579.t1 MTR_7g092510 67.500 80 26 0 132 211 171 250 1.23e-30 116
MS.gene82579.t1 MTR_4g131160 62.121 66 24 1 134 199 196 260 1.14e-17 81.6
MS.gene82579.t1 MTR_4g131160 62.121 66 24 1 134 199 199 263 1.27e-17 81.6
MS.gene82579.t1 MTR_1g080890 59.091 66 26 1 134 199 193 257 1.02e-16 79.0
MS.gene82579.t1 MTR_1g069155 45.570 79 42 1 121 199 304 381 3.15e-14 72.0
MS.gene82579.t1 MTR_1g019240 44.304 79 43 1 122 200 73 150 2.55e-13 68.2
MS.gene82579.t1 MTR_5g005110 43.529 85 47 1 114 198 204 287 2.55e-13 68.9
MS.gene82579.t1 MTR_4g033295 49.231 65 33 0 134 198 118 182 4.66e-13 66.2
MS.gene82579.t1 MTR_4g033295 47.761 67 34 1 134 199 118 184 7.32e-13 65.5
MS.gene82579.t1 MTR_1g018090 50.769 65 31 1 134 198 274 337 9.13e-13 67.4
MS.gene82579.t1 MTR_4g065870 49.231 65 33 0 134 198 355 419 9.64e-13 67.4
MS.gene82579.t1 MTR_1g070870 57.576 66 27 1 134 199 120 184 3.47e-12 65.1
MS.gene82579.t1 MTR_1g070870 57.576 66 27 1 134 199 123 187 3.59e-12 65.1
MS.gene82579.t1 MTR_3g103030 44.318 88 44 2 111 198 210 292 3.62e-12 65.5
MS.gene82579.t1 MTR_2g098310 46.154 65 35 0 134 198 332 396 4.04e-12 65.9
MS.gene82579.t1 MTR_4g065870 48.387 62 32 0 134 195 355 416 6.03e-12 65.1
MS.gene82579.t1 MTR_7g099540 43.038 79 43 2 121 199 240 316 7.22e-12 65.1
MS.gene82579.t1 MTR_2g098310 46.875 64 34 0 134 197 332 395 1.36e-11 64.3
MS.gene82579.t1 MTR_1g084980 30.114 176 102 5 41 199 355 526 2.19e-11 63.9
MS.gene82579.t1 MTR_7g092540 46.269 67 36 0 134 200 243 309 2.34e-11 63.2
MS.gene82579.t1 MTR_7g099540 43.038 79 43 2 121 199 240 316 5.14e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82579.t1 AT1G73830 51.163 258 85 10 14 251 25 261 8.41e-65 202
MS.gene82579.t1 AT1G73830 51.163 258 84 11 14 251 25 260 1.01e-62 197
MS.gene82579.t1 AT1G18400 78.704 108 23 0 131 238 142 249 1.47e-59 189
MS.gene82579.t1 AT1G18400 84.615 91 14 0 131 221 142 232 2.27e-53 173
MS.gene82579.t1 AT1G25330 64.407 118 41 1 124 240 94 211 1.55e-47 157
MS.gene82579.t1 AT5G50915 62.264 106 39 1 113 217 115 220 4.46e-39 137
MS.gene82579.t1 AT5G50915 62.264 106 39 1 113 217 115 220 4.46e-39 137
MS.gene82579.t1 AT5G50915 62.264 106 39 1 113 217 115 220 8.38e-39 137
MS.gene82579.t1 AT5G50915 62.264 106 39 1 113 217 115 220 8.38e-39 137
MS.gene82579.t1 AT3G07340 58.197 122 45 1 96 211 214 335 3.37e-37 136
MS.gene82579.t1 AT3G07340 58.197 122 45 1 96 211 214 335 3.58e-37 135
MS.gene82579.t1 AT5G48560 70.115 87 25 1 126 211 293 379 9.58e-35 129
MS.gene82579.t1 AT5G48560 70.115 87 25 1 126 211 293 379 1.58e-34 129
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 170 252 3.46e-34 126
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 199 281 7.97e-34 125
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 221 303 1.02e-33 125
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 221 303 1.02e-33 125
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 221 303 1.02e-33 125
MS.gene82579.t1 AT1G26260 69.880 83 25 0 132 214 221 303 1.02e-33 125
MS.gene82579.t1 AT1G68920 71.951 82 23 0 132 213 300 381 1.46e-33 127
MS.gene82579.t1 AT1G68920 71.951 82 23 0 132 213 301 382 1.47e-33 127
MS.gene82579.t1 AT1G68920 71.951 82 23 0 132 213 301 382 1.47e-33 127
MS.gene82579.t1 AT1G68920 71.951 82 23 0 132 213 301 382 1.47e-33 127
MS.gene82579.t1 AT3G23690 65.517 87 30 0 126 212 183 269 1.53e-33 125
MS.gene82579.t1 AT1G59640 67.901 81 26 0 126 206 128 208 2.15e-33 122
MS.gene82579.t1 AT4G34530 62.105 95 34 1 123 217 161 253 9.73e-33 122
MS.gene82579.t1 AT4G36540 61.386 101 36 2 122 221 128 226 3.36e-32 120
MS.gene82579.t1 AT4G36540 61.386 101 36 2 122 221 128 226 3.62e-32 120
MS.gene82579.t1 AT3G57800 63.736 91 33 0 124 214 194 284 4.99e-32 121
MS.gene82579.t1 AT1G59640 64.444 90 27 1 122 206 119 208 5.80e-32 120
MS.gene82579.t1 AT5G62610 69.737 76 23 0 126 201 145 220 8.15e-32 118
MS.gene82579.t1 AT5G62610 69.737 76 23 0 126 201 145 220 8.15e-32 118
MS.gene82579.t1 AT1G10120 60.825 97 36 1 119 215 191 285 1.59e-31 119
MS.gene82579.t1 AT1G10120 60.825 97 36 1 119 215 191 285 1.59e-31 119
MS.gene82579.t1 AT2G42300 66.250 80 27 0 132 211 183 262 8.43e-31 115
MS.gene82579.t1 AT2G42300 49.593 123 52 3 132 249 183 300 2.56e-30 115
MS.gene82579.t1 AT2G18300 55.455 110 41 1 102 203 145 254 1.96e-29 113
MS.gene82579.t1 AT2G18300 55.455 110 41 1 102 203 145 254 1.98e-29 113
MS.gene82579.t1 AT2G18300 55.455 110 41 1 102 203 145 254 3.56e-29 113
MS.gene82579.t1 AT3G57800 42.029 138 33 1 124 214 194 331 2.98e-23 97.8
MS.gene82579.t1 AT2G24260 54.321 81 35 2 134 213 35 114 7.54e-18 80.5
MS.gene82579.t1 AT4G30980 62.121 66 24 1 134 199 130 194 1.37e-17 80.9
MS.gene82579.t1 AT4G30980 62.121 66 24 1 134 199 178 242 1.83e-17 80.9
MS.gene82579.t1 AT5G58010 54.545 77 34 1 123 199 88 163 2.76e-17 79.7
MS.gene82579.t1 AT2G24260 54.321 81 35 2 134 213 138 217 3.55e-17 80.1
MS.gene82579.t1 AT2G42300 75.610 41 10 0 132 172 183 223 2.83e-14 70.5
MS.gene82579.t1 AT2G42300 75.610 41 10 0 132 172 183 223 2.83e-14 70.5
MS.gene82579.t1 AT2G42300 75.610 41 10 0 132 172 183 223 3.75e-14 70.1
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT1G09530 36.552 145 77 5 74 208 267 406 2.41e-13 69.7
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 267 342 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 267 342 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 267 342 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 267 342 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 196 271 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 196 271 2.85e-13 69.3
MS.gene82579.t1 AT2G20180 42.857 77 43 1 123 199 196 271 2.85e-13 69.3
MS.gene82579.t1 AT1G27740 32.903 155 80 5 67 198 77 230 4.45e-13 67.4
MS.gene82579.t1 AT4G33880 40.496 121 63 4 82 198 214 329 9.40e-13 67.4
MS.gene82579.t1 AT2G46970 40.964 83 43 2 122 199 206 287 1.41e-12 67.0
MS.gene82579.t1 AT2G46970 40.964 83 43 2 122 199 184 265 1.71e-12 66.6
MS.gene82579.t1 AT2G46970 40.964 83 43 2 122 199 175 256 1.81e-12 66.6
MS.gene82579.t1 AT2G20180 43.243 74 41 1 123 196 267 339 3.25e-12 65.9
MS.gene82579.t1 AT1G03040 49.383 81 39 2 134 213 139 218 8.06e-12 64.3
MS.gene82579.t1 AT1G03040 49.383 81 39 2 134 213 144 223 8.74e-12 64.3
MS.gene82579.t1 AT4G02590 56.061 66 28 1 134 199 83 147 1.12e-11 63.5
MS.gene82579.t1 AT4G02590 56.061 66 28 1 134 199 146 210 1.38e-11 63.5
MS.gene82579.t1 AT4G02590 56.061 66 28 1 134 199 146 210 1.38e-11 63.5
MS.gene82579.t1 AT1G03040 56.061 66 28 1 134 199 144 208 1.60e-11 63.5
MS.gene82579.t1 AT4G00050 45.333 75 40 1 124 198 95 168 2.08e-11 63.2
MS.gene82579.t1 AT1G35460 44.776 67 37 0 132 198 179 245 2.30e-11 62.8
MS.gene82579.t1 AT4G28800 32.558 129 71 4 77 198 193 312 2.39e-11 63.5
MS.gene82579.t1 AT4G09180 45.455 66 36 0 133 198 183 248 2.58e-11 62.4
MS.gene82579.t1 AT4G28815 36.585 82 47 2 137 214 71 151 3.83e-11 61.6
MS.gene82579.t1 AT4G28790 46.875 64 33 1 136 199 273 335 4.23e-11 62.8
MS.gene82579.t1 AT4G00050 45.333 75 40 1 124 198 197 270 4.56e-11 62.8
MS.gene82579.t1 AT4G00050 45.333 75 40 1 124 198 197 270 5.74e-11 62.4
MS.gene82579.t1 AT2G43140 50.000 64 32 0 134 197 134 197 5.91e-11 60.8
MS.gene82579.t1 AT2G43140 50.000 64 32 0 134 197 231 294 8.95e-11 61.2

Find 33 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTCTTCCAAGTTTCT+TGG 0.225496 6.3:-78542258 None:intergenic
GTAGAAGAAATTTACAAGTT+TGG 0.255043 6.3:-78542460 None:intergenic
AAGATGCTGTCACAAGAAAA+AGG 0.352093 6.3:-78542198 None:intergenic
GGAACTGTTGAATCAATTCA+TGG 0.423954 6.3:+78542140 MS.gene82579:CDS
TGCTTGCAGAATATTGTTCC+AGG 0.427390 6.3:+78543128 MS.gene82579:CDS
ACTCCTGCAGTTTCTGAAAG+TGG 0.440216 6.3:+78542429 MS.gene82579:CDS
CTTCCACTTTCAGAAACTGC+AGG 0.466079 6.3:-78542432 None:intergenic
TTGCTTGCTTTCAACCAACT+TGG 0.490280 6.3:+78544097 MS.gene82579:CDS
TATTGTTCCAGGATGTTACA+AGG 0.493701 6.3:+78543139 MS.gene82579:CDS
TAGCAAGGTATAAGAGAGAA+GGG 0.498236 6.3:+78544064 MS.gene82579:CDS
GAAAATAAAGTTCATCATGA+AGG 0.498927 6.3:+78542357 MS.gene82579:CDS
TTGATTTGTGGCAGAGAGCA+AGG 0.504432 6.3:+78544022 MS.gene82579:intron
TTTCAATGGTTGCAGACCAT+GGG 0.515237 6.3:+78543259 MS.gene82579:intron
AGGTATAAGAGAGAAGGGTA+TGG 0.517402 6.3:+78544069 MS.gene82579:CDS
TTAGCAAGGTATAAGAGAGA+AGG 0.520461 6.3:+78544063 MS.gene82579:CDS
TGAAGTCAAAGTGGCCAAGT+TGG 0.520695 6.3:-78544111 None:intergenic
ATATTAACCTTGTAACATCC+TGG 0.520795 6.3:-78543146 None:intergenic
TAATTTCAGAGTGGTGGAAG+AGG 0.521842 6.3:+78542564 MS.gene82579:intron
TATGATTAATTTCAGAGTGG+TGG 0.522541 6.3:+78542558 MS.gene82579:intron
TAGTCACAGTCTAGCAGAAA+GGG 0.525871 6.3:+78542671 MS.gene82579:CDS
TATAAGAGAGAAGGGTATGG+AGG 0.527385 6.3:+78544072 MS.gene82579:CDS
CATGGGAATGGCAGTAATGT+TGG 0.527745 6.3:+78543276 MS.gene82579:CDS
TTGTTATTCAGGTTAGAAGA+GGG 0.541611 6.3:+78543084 MS.gene82579:intron
ATAGTCACAGTCTAGCAGAA+AGG 0.561228 6.3:+78542670 MS.gene82579:CDS
TGATTTGTGGCAGAGAGCAA+GGG 0.569667 6.3:+78544023 MS.gene82579:intron
CTGAAGCAAAAGAGTTAGCA+AGG 0.571614 6.3:+78544049 MS.gene82579:CDS
ATCCAAAATTGAAGTCAAAG+TGG 0.583596 6.3:-78544120 None:intergenic
GTTCATGTTAGAGCAAGAAG+AGG 0.589317 6.3:+78542636 MS.gene82579:CDS
TTTGTTATTCAGGTTAGAAG+AGG 0.590695 6.3:+78543083 MS.gene82579:intron
ATGGTTGCAGACCATGGGAA+TGG 0.592994 6.3:+78543264 MS.gene82579:intron
AACAGAAGAAGAGAAAGCAA+AGG 0.600831 6.3:+78542608 MS.gene82579:CDS
CAACATTACTGCCATTCCCA+TGG 0.603267 6.3:-78543275 None:intergenic
AGATGATCTAGAAACAATGC+AGG 0.618754 6.3:+78543523 MS.gene82579:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTTAAAAATTAAA+AGG - chr6.3:78543177-78543196 None:intergenic 0.0%
!! GATGAAATTAAATTATTAAA+TGG + chr6.3:78542521-78542540 MS.gene82579:intron 10.0%
!! TTAGTAATATTTATAGTTAT+AGG + chr6.3:78543767-78543786 MS.gene82579:intron 10.0%
!!! ATTTTTTTTTCTTTTTTTTG+AGG - chr6.3:78543415-78543434 None:intergenic 10.0%
!!! TTATTTATTTATTTGATTTG+TGG + chr6.3:78544010-78544029 MS.gene82579:intron 10.0%
!! AAGTTGAAAAAAAAAACTTA+TGG + chr6.3:78542859-78542878 MS.gene82579:intron 15.0%
!! AATTAATGTGAATTTATGTT+TGG + chr6.3:78543432-78543451 MS.gene82579:intron 15.0%
!!! AAATCAAACTGTTTTATATA+AGG + chr6.3:78542793-78542812 MS.gene82579:intron 15.0%
!!! AGTAATATTCATTTATTTCT+AGG + chr6.3:78543346-78543365 MS.gene82579:intron 15.0%
!!! GGTTAATTTTTTTAAAAGAA+AGG + chr6.3:78543788-78543807 MS.gene82579:intron 15.0%
!!! TAAGCTATTTCTATAATAAA+TGG + chr6.3:78542763-78542782 MS.gene82579:intron 15.0%
!!! TTATTTTCTTTTTGTTTCAA+TGG + chr6.3:78543245-78543264 MS.gene82579:intron 15.0%
!! AAGTTAAAATTCATTAGAGT+TGG + chr6.3:78543686-78543705 MS.gene82579:intron 20.0%
!! CACTTAATTAACCTATATTT+AGG - chr6.3:78542705-78542724 None:intergenic 20.0%
!!! ATCTATTTCTAAAAGTTTCA+TGG + chr6.3:78543550-78543569 MS.gene82579:intron 20.0%
!!! CTGATTTTTTTTTGTTATTC+AGG + chr6.3:78543073-78543092 MS.gene82579:intron 20.0%
!!! TATCAAATTTTCTTCTATCT+TGG + chr6.3:78543014-78543033 MS.gene82579:intron 20.0%
!!! TTTTCTTCTTGAAAAATTGT+TGG - chr6.3:78542342-78542361 None:intergenic 20.0%
! AAATTGGACAAAGTTTATGT+AGG - chr6.3:78543867-78543886 None:intergenic 25.0%
! AGGTAAAAAGAGAAAAATGA+TGG + chr6.3:78542377-78542396 MS.gene82579:CDS 25.0%
! GAAAATAAAGTTCATCATGA+AGG + chr6.3:78542357-78542376 MS.gene82579:CDS 25.0%
! GGGTATAATTTCCTAAATAT+AGG + chr6.3:78542691-78542710 MS.gene82579:intron 25.0%
! GTAGAAGAAATTTACAAGTT+TGG - chr6.3:78542463-78542482 None:intergenic 25.0%
! TAATAATATACGCTAACTGT+TGG + chr6.3:78543661-78543680 MS.gene82579:intron 25.0%
! TTCTATGATTAATTTCAGAG+TGG + chr6.3:78542555-78542574 MS.gene82579:intron 25.0%
!! TATAACATGCTCATTTTGTA+TGG + chr6.3:78543605-78543624 MS.gene82579:intron 25.0%
!!! AGACTATTTTGAAGAGTTTA+TGG - chr6.3:78542903-78542922 None:intergenic 25.0%
AAATTCTCTTCCAAGTTTCT+TGG - chr6.3:78542261-78542280 None:intergenic 30.0%
AGTCTCAATATTAGTCCTAT+TGG - chr6.3:78543895-78543914 None:intergenic 30.0%
ATATTAACCTTGTAACATCC+TGG - chr6.3:78543149-78543168 None:intergenic 30.0%
TATGATTAATTTCAGAGTGG+TGG + chr6.3:78542558-78542577 MS.gene82579:intron 30.0%
TGGTTCATAATTGATGTGTA+TGG + chr6.3:78543034-78543053 MS.gene82579:intron 30.0%
! AACTTGGAAGAGAATTTTCA+TGG + chr6.3:78542264-78542283 MS.gene82579:CDS 30.0%
! ACATGTTTTTCCAAGAAACT+TGG + chr6.3:78542248-78542267 MS.gene82579:CDS 30.0%
! CTCATTTTGTATGGTTGTTA+GGG + chr6.3:78543614-78543633 MS.gene82579:intron 30.0%
! TTGTTATTCAGGTTAGAAGA+GGG + chr6.3:78543084-78543103 MS.gene82579:intron 30.0%
!! TTTGTTATTCAGGTTAGAAG+AGG + chr6.3:78543083-78543102 MS.gene82579:intron 30.0%
!!! GATTTTGATTATTGACATGC+TGG - chr6.3:78542296-78542315 None:intergenic 30.0%
AACAGAAGAAGAGAAAGCAA+AGG + chr6.3:78542608-78542627 MS.gene82579:CDS 35.0%
AAGATGCTGTCACAAGAAAA+AGG - chr6.3:78542201-78542220 None:intergenic 35.0%
AGATGATCTAGAAACAATGC+AGG + chr6.3:78543523-78543542 MS.gene82579:CDS 35.0%
GGAACTGTTGAATCAATTCA+TGG + chr6.3:78542140-78542159 MS.gene82579:CDS 35.0%
TAGCAAGGTATAAGAGAGAA+GGG + chr6.3:78544064-78544083 MS.gene82579:CDS 35.0%
TATTGTTCCAGGATGTTACA+AGG + chr6.3:78543139-78543158 MS.gene82579:CDS 35.0%
TTAGCAAGGTATAAGAGAGA+AGG + chr6.3:78544063-78544082 MS.gene82579:CDS 35.0%
TTGGACAAAGTTTATGTAGG+AGG - chr6.3:78543864-78543883 None:intergenic 35.0%
! GCTCATTTTGTATGGTTGTT+AGG + chr6.3:78543613-78543632 MS.gene82579:intron 35.0%
! TTTTTCTTGTGACAGCATCT+TGG + chr6.3:78542200-78542219 MS.gene82579:CDS 35.0%
!! AGTCCTATTGGTGCTAAAAT+TGG - chr6.3:78543883-78543902 None:intergenic 35.0%
!! GATTTTCAAGAGACTAGTTC+TGG + chr6.3:78542399-78542418 MS.gene82579:CDS 35.0%
!! TGTCCAATTTTAGCACCAAT+AGG + chr6.3:78543877-78543896 MS.gene82579:intron 35.0%
AGGTATAAGAGAGAAGGGTA+TGG + chr6.3:78544069-78544088 MS.gene82579:CDS 40.0%
ATAGTCACAGTCTAGCAGAA+AGG + chr6.3:78542670-78542689 MS.gene82579:CDS 40.0%
CTGAAGCAAAAGAGTTAGCA+AGG + chr6.3:78544049-78544068 MS.gene82579:CDS 40.0%
GTTCATGTTAGAGCAAGAAG+AGG + chr6.3:78542636-78542655 MS.gene82579:CDS 40.0%
TAGTCACAGTCTAGCAGAAA+GGG + chr6.3:78542671-78542690 MS.gene82579:CDS 40.0%
TGCTTGCAGAATATTGTTCC+AGG + chr6.3:78543128-78543147 MS.gene82579:CDS 40.0%
TTGCTTGCTTTCAACCAACT+TGG + chr6.3:78544097-78544116 MS.gene82579:CDS 40.0%
TTTCAATGGTTGCAGACCAT+GGG + chr6.3:78543259-78543278 MS.gene82579:intron 40.0%
! TAATTTCAGAGTGGTGGAAG+AGG + chr6.3:78542564-78542583 MS.gene82579:intron 40.0%
! TATAAGAGAGAAGGGTATGG+AGG + chr6.3:78544072-78544091 MS.gene82579:CDS 40.0%
!! GTTGTTTTCGTAAGCTACAC+TGG + chr6.3:78542821-78542840 MS.gene82579:intron 40.0%
CAACATTACTGCCATTCCCA+TGG - chr6.3:78543278-78543297 None:intergenic 45.0%
CATGGGAATGGCAGTAATGT+TGG + chr6.3:78543276-78543295 MS.gene82579:CDS 45.0%
CTTCCACTTTCAGAAACTGC+AGG - chr6.3:78542435-78542454 None:intergenic 45.0%
GTTTCAATGGTTGCAGACCA+TGG + chr6.3:78543258-78543277 MS.gene82579:intron 45.0%
! ACTCCTGCAGTTTCTGAAAG+TGG + chr6.3:78542429-78542448 MS.gene82579:CDS 45.0%
! TGATTTGTGGCAGAGAGCAA+GGG + chr6.3:78544023-78544042 MS.gene82579:intron 45.0%
!! TTGATTTGTGGCAGAGAGCA+AGG + chr6.3:78544022-78544041 MS.gene82579:intron 45.0%
!!! TTAAAAAACTTTTTTTTAAA+AGG - chr6.3:78543926-78543945 None:intergenic 5.0%
ATGGTTGCAGACCATGGGAA+TGG + chr6.3:78543264-78543283 MS.gene82579:intron 50.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 78542138 78544128 78542138 ID=MS.gene82579
chr6.3 mRNA 78542138 78544128 78542138 ID=MS.gene82579.t1;Parent=MS.gene82579
chr6.3 exon 78542138 78542467 78542138 ID=MS.gene82579.t1.exon1;Parent=MS.gene82579.t1
chr6.3 CDS 78542138 78542467 78542138 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
chr6.3 exon 78542573 78542692 78542573 ID=MS.gene82579.t1.exon2;Parent=MS.gene82579.t1
chr6.3 CDS 78542573 78542692 78542573 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
chr6.3 exon 78543095 78543160 78543095 ID=MS.gene82579.t1.exon3;Parent=MS.gene82579.t1
chr6.3 CDS 78543095 78543160 78543095 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
chr6.3 exon 78543274 78543342 78543274 ID=MS.gene82579.t1.exon4;Parent=MS.gene82579.t1
chr6.3 CDS 78543274 78543342 78543274 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
chr6.3 exon 78543467 78543544 78543467 ID=MS.gene82579.t1.exon5;Parent=MS.gene82579.t1
chr6.3 CDS 78543467 78543544 78543467 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
chr6.3 exon 78544036 78544128 78544036 ID=MS.gene82579.t1.exon6;Parent=MS.gene82579.t1
chr6.3 CDS 78544036 78544128 78544036 ID=cds.MS.gene82579.t1;Parent=MS.gene82579.t1
Gene Sequence

>MS.gene82579

ATGGAACTGTTGAATCAATTCATGGAAAATTCAAACATGAACATGATGCATAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAACAAGAACAAGAACATGTTTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTCCAGCATGTCAATAATCAAAATCACAATGCAGTTCAACTTTCACTTCCAACAATTTTTCAAGAAGAAAATAAAGTTCATCATGAAGGTAAAAAGAGAAAAATGATGGATTTTCAAGAGACTAGTTCTGGAAATTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAATCCAAACTTGTAAATTTCTTCTACTTGTTTTTTTCATTTTATTCTTCATTTTTTGTGATTGTGATGAAATTAAATTATTAAATGGTTTTGTTATTTTTCTATGATTAATTTCAGAGTGGTGGAAGAGGAAAACGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGGGTATAATTTCCTAAATATAGGTTAATTAAGTGTTTATAGTATAATCATTTATTATATAAGTGTTTATGCATAAGCTATTTCTATAATAAATGGTAAAATAAAATCAAACTGTTTTATATAAGGTATAAGTTGTTTTCGTAAGCTACACTGGTGAGCTTAAGAAAATAAGTTGAAAAAAAAAACTTATGGATATGTTGTAAGTTGTTTCCATAAACTCTTCAAAATAGTCTTGCACTTATTTATATGACAGTAGATAAGTTCAAATAAGTCAATATAAAAAGACGATAACAATTATGAATAGATTTAATTATTTAAAGTCTTTATCAAATTTTCTTCTATCTTGGTTCATAATTGATGTGTATGGACTAATAAAGTTTTCTCTGATTTTTTTTTGTTATTCAGGTTAGAAGAGGGAAAATCAATGAGAAATTGAAGTGCTTGCAGAATATTGTTCCAGGATGTTACAAGGTTAATATATGATCCTTTTAATTTTTAAAAATATAAAATAAAATAAAAATCACATTTGTGTCTAATTTCATAATTGTAAAAATCTTATTTTCTTTTTGTTTCAATGGTTGCAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAAGTAAGTAATATTCATTTATTTCTAGGAAAATATAGTTTTAAAATATATTTAATTAATGTTAATTTATCACCTCAAAAAAAAGAAAAAAAAATTAATGTGAATTTATGTTTGGCTATTTTTGCAGTTTCTTTCTTTGAAGCTTACTGCAGCAAGTACTTATTATGACTTCAATTCAGAGACAGATGATCTAGAAACAATGCAGGTATAATCTATTTCTAAAAGTTTCATGGTTTTATTCATATATAATATGCTCATATTCATGTATAACATGCTCATTTTGTATGGTTGTTAGGGTGCATGAAAACTTCTCAATTCATATAATAATATACGCTAACTGTTGGATAAGTTAAAATTCATTAGAGTTGGTGAATATGAAATTAAGTAGTTGATAGTTGATAAAATTAATTAGAAACAATTATTATATTTAGTAATATTTATAGTTATAGGTTAATTTTTTTAAAAGAAAGGTTAAATATGTTTTTAGTTTCTATAAGAATCATAAATTTTTAAGTTTAGTTCCTCCTACATAAACTTTGTCCAATTTTAGCACCAATAGGACTAATATTGAGACTAAATAACTCCTTTTAAAAAAAAGTTTTTTAATTAAATACTAAAATGAGACAAAATATATTTAAAATACTCTTCTTTTATTTATTTATTTATTTATTTATTTATTTATTTGATTTGTGGCAGAGAGCAAGGGCATCTGAAGCAAAAGAGTTAGCAAGGTATAAGAGAGAAGGGTATGGAGGAATTGCTTGCTTTCAACCAACTTGGCCACTTTGA
Protein sequence

>MS.gene82579.t1

MELLNQFMENSNMNMMHNLMPFSCDSILEHHQQQEQEHVFPRNLEENFHGLVQHVNNQNHNAVQLSLPTIFQEENKVHHEGKKRKMMDFQETSSGNSTPAVSESGSKSKLSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREGYGGIACFQPTWPL