Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82637.t1 | XP_003600003.2 | 82.8 | 233 | 30 | 2 | 17 | 239 | 3 | 235 | 4.50E-112 | 414.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82637.t1 | Q9LT81 | 33.3 | 321 | 103 | 12 | 21 | 235 | 61 | 376 | 1.0e-35 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82637.t1 | G7J1X0 | 82.8 | 233 | 30 | 2 | 17 | 239 | 3 | 235 | 3.2e-112 | 414.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene82637.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82637.t1 | MTR_3g050390 | 82.833 | 233 | 30 | 2 | 17 | 239 | 3 | 235 | 1.70e-141 | 396 |
| MS.gene82637.t1 | MTR_4g113860 | 46.333 | 300 | 96 | 9 | 3 | 239 | 17 | 314 | 9.47e-74 | 227 |
| MS.gene82637.t1 | MTR_4g113970 | 51.869 | 214 | 69 | 6 | 3 | 182 | 17 | 230 | 5.01e-63 | 197 |
| MS.gene82637.t1 | MTR_4g113940 | 41.667 | 276 | 111 | 9 | 1 | 232 | 1 | 270 | 1.33e-57 | 184 |
| MS.gene82637.t1 | MTR_4g113890 | 37.647 | 255 | 110 | 6 | 1 | 231 | 1 | 230 | 6.48e-39 | 135 |
| MS.gene82637.t1 | MTR_8g066730 | 39.683 | 126 | 55 | 3 | 42 | 149 | 86 | 208 | 1.37e-21 | 91.3 |
| MS.gene82637.t1 | MTR_8g066730 | 39.683 | 126 | 55 | 3 | 42 | 149 | 86 | 208 | 2.34e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82637.t1 | AT3G19360 | 32.812 | 320 | 106 | 11 | 21 | 235 | 61 | 376 | 2.16e-41 | 145 |
| MS.gene82637.t1 | AT3G19360 | 32.812 | 320 | 106 | 11 | 21 | 235 | 61 | 376 | 2.16e-41 | 145 |
| MS.gene82637.t1 | AT1G32360 | 36.719 | 128 | 55 | 3 | 42 | 146 | 85 | 209 | 2.13e-19 | 86.3 |
Find 67 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAATGGATGCAGTTTC+TGG | 0.186612 | 3.1:+36844750 | MS.gene82637:CDS |
| TCCTCTGCACTTGGCTAGTT+GGG | 0.297541 | 3.1:-36846243 | None:intergenic |
| TTCCAGTAAGTGCCCCTTGC+TGG | 0.303703 | 3.1:-36844973 | None:intergenic |
| TTTGCCACACTTAGACTTGC+TGG | 0.314187 | 3.1:-36846117 | None:intergenic |
| GGCTAGTTGGGTAGAATTAG+AGG | 0.330401 | 3.1:-36846231 | None:intergenic |
| CCGCCTGTTTCTTTGTTTGA+TGG | 0.330855 | 3.1:-36844589 | None:intergenic |
| ATAGGCTTAGGGATGATTCT+TGG | 0.341417 | 3.1:+36844866 | MS.gene82637:CDS |
| CTCGTATTTGTCATAAGTTC+AGG | 0.342100 | 3.1:+36844626 | MS.gene82637:CDS |
| CTCCTCTGCACTTGGCTAGT+TGG | 0.350321 | 3.1:-36846244 | None:intergenic |
| AGCCAGCAAGGGGCACTTAC+TGG | 0.351537 | 3.1:+36844971 | MS.gene82637:CDS |
| TAAGGAAGCCACCGCCGAAT+TGG | 0.369861 | 3.1:+36844704 | MS.gene82637:CDS |
| CTAATAGTTTCGAAGGCAAT+AGG | 0.370078 | 3.1:+36844938 | MS.gene82637:CDS |
| GGGCACTTACTGGAAGATTA+AGG | 0.404455 | 3.1:+36844981 | MS.gene82637:CDS |
| AGACTTGCTGGGATGCTTGT+AGG | 0.406856 | 3.1:-36846105 | None:intergenic |
| TCTTGTTCCTTGAAAATTGA+GGG | 0.407508 | 3.1:-36844516 | None:intergenic |
| CTCTTGTTCCTTGAAAATTG+AGG | 0.430344 | 3.1:-36844517 | None:intergenic |
| ATTTGTCATAAGTTCAGGTT+TGG | 0.439137 | 3.1:+36844631 | MS.gene82637:CDS |
| CTTCCATCAAACAAAGAAAC+AGG | 0.444809 | 3.1:+36844586 | MS.gene82637:CDS |
| TTGCCACACTTAGACTTGCT+GGG | 0.445723 | 3.1:-36846116 | None:intergenic |
| AGACGAAGTCTTTACTTTGG+TGG | 0.450051 | 3.1:+36846157 | MS.gene82637:CDS |
| TCAATACTATATATGCTGAT+TGG | 0.453146 | 3.1:+36846196 | MS.gene82637:CDS |
| AATGGTGAGGAATGTCCTTA+TGG | 0.454214 | 3.1:+36844823 | MS.gene82637:CDS |
| GTTTCTTTGTTTGATGGAAG+AGG | 0.456265 | 3.1:-36844583 | None:intergenic |
| CACTATGGTCATGGAGAAGC+AGG | 0.459706 | 3.1:+36845009 | MS.gene82637:CDS |
| AAGATATCGTTGTGGTGGTA+TGG | 0.470997 | 3.1:-36844484 | None:intergenic |
| CTGGCTCTCGCAACGAGGAA+TGG | 0.475242 | 3.1:+36844737 | MS.gene82637:CDS |
| CTCACGGGGTTGGTGAGATA+AGG | 0.482058 | 3.1:+36844686 | MS.gene82637:CDS |
| AGCTCCTTCCAATTCGGCGG+TGG | 0.483397 | 3.1:-36844712 | None:intergenic |
| CTAAGACGAAGTCTTTACTT+TGG | 0.484791 | 3.1:+36846154 | MS.gene82637:CDS |
| TTTCTTTGTTTGATGGAAGA+GGG | 0.487321 | 3.1:-36844582 | None:intergenic |
| GATGCTTGTAGGTGCATCAT+TGG | 0.488672 | 3.1:-36846094 | None:intergenic |
| TAGGTACAATGTTCACCTTT+CGG | 0.492110 | 3.1:-36844661 | None:intergenic |
| AAACAACACTTATCACCATA+AGG | 0.495083 | 3.1:-36844838 | None:intergenic |
| TCTAAGTGTGGCAAAGGAAG+TGG | 0.499183 | 3.1:+36846125 | MS.gene82637:CDS |
| CAGCAAATCATTCACAAGAT+GGG | 0.499225 | 3.1:+36844781 | MS.gene82637:CDS |
| CCAGCTAGCTCCTTCCAATT+CGG | 0.500119 | 3.1:-36844718 | None:intergenic |
| TCAGCAAATCATTCACAAGA+TGG | 0.508010 | 3.1:+36844780 | MS.gene82637:CDS |
| AACATTGTACCTATGCTCAC+GGG | 0.508915 | 3.1:+36844671 | MS.gene82637:CDS |
| CCGAATTGGAAGGAGCTAGC+TGG | 0.521647 | 3.1:+36844718 | MS.gene82637:CDS |
| AAGATTAAGGACTGTCACTA+TGG | 0.525056 | 3.1:+36844994 | MS.gene82637:CDS |
| GTCTGTGAACAAGCCAGCAA+GGG | 0.545575 | 3.1:+36844960 | MS.gene82637:CDS |
| ACTTCCAATGCTTAATGCAC+AGG | 0.545801 | 3.1:-36844902 | None:intergenic |
| TGTACCTATGCTCACGGGGT+TGG | 0.546278 | 3.1:+36844676 | MS.gene82637:CDS |
| GATGGTTCTAATAGTTTCGA+AGG | 0.547401 | 3.1:+36844931 | MS.gene82637:CDS |
| GGTCTGTGAACAAGCCAGCA+AGG | 0.553295 | 3.1:+36844959 | MS.gene82637:CDS |
| AGCAAGTCTAAGTGTGGCAA+AGG | 0.556244 | 3.1:+36846119 | MS.gene82637:CDS |
| GAGGCCTGTGCATTAAGCAT+TGG | 0.559524 | 3.1:+36844898 | MS.gene82637:CDS |
| AAGAGGGCATATGAATGCAT+TGG | 0.560421 | 3.1:-36844566 | None:intergenic |
| AGGTTTGGTAATTGTCCGAA+AGG | 0.564006 | 3.1:+36844646 | MS.gene82637:CDS |
| GCATTAAGCATTGGAAGTAT+CGG | 0.572339 | 3.1:+36844907 | MS.gene82637:CDS |
| AAGGACTGTCACTATGGTCA+TGG | 0.572929 | 3.1:+36845000 | MS.gene82637:CDS |
| GAACATTGTACCTATGCTCA+CGG | 0.579167 | 3.1:+36844670 | MS.gene82637:CDS |
| GAAGCCACCGCCGAATTGGA+AGG | 0.582073 | 3.1:+36844708 | MS.gene82637:CDS |
| AGCATTGGAAGTATCGGAGA+TGG | 0.590771 | 3.1:+36844913 | MS.gene82637:CDS |
| AGCAAATCATTCACAAGATG+GGG | 0.600236 | 3.1:+36844782 | MS.gene82637:CDS |
| TTTCAAAGATATCGTTGTGG+TGG | 0.607400 | 3.1:-36844489 | None:intergenic |
| CTCACCAACCCCGTGAGCAT+AGG | 0.617079 | 3.1:-36844680 | None:intergenic |
| GCTAGCTCCTTCCAATTCGG+CGG | 0.629242 | 3.1:-36844715 | None:intergenic |
| CATCCCAGCAAGTCTAAGTG+TGG | 0.664369 | 3.1:+36846113 | MS.gene82637:CDS |
| CAAGAAATACTACAATGGTG+AGG | 0.666991 | 3.1:+36844810 | MS.gene82637:CDS |
| TCTGTGAACAAGCCAGCAAG+GGG | 0.667598 | 3.1:+36844961 | MS.gene82637:CDS |
| CTATGCAAGAAATACTACAA+TGG | 0.669884 | 3.1:+36844805 | MS.gene82637:CDS |
| TGATTCTTGGAAATCAAGAG+AGG | 0.676002 | 3.1:+36844879 | MS.gene82637:CDS |
| CCATCAAACAAAGAAACAGG+CGG | 0.683642 | 3.1:+36844589 | MS.gene82637:CDS |
| TCGTTTCAAAGATATCGTTG+TGG | 0.683730 | 3.1:-36844492 | None:intergenic |
| ACATTGTACCTATGCTCACG+GGG | 0.692970 | 3.1:+36844672 | MS.gene82637:CDS |
| GCTAGCTGGCTCTCGCAACG+AGG | 0.719790 | 3.1:+36844732 | MS.gene82637:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATATTTTATACTAGATA+GGG | + | chr3.1:36845648-36845667 | MS.gene82637:intron | 15.0% |
| !! | TATAAAATATTGTGAAACAG+CGG | - | chr3.1:36845641-36845660 | None:intergenic | 20.0% |
| !! | TTATAACAATCAAATCTGTT+TGG | + | chr3.1:36846011-36846030 | MS.gene82637:intron | 20.0% |
| !!! | ATAATTCTACTGTTTTGTTT+TGG | + | chr3.1:36845070-36845089 | MS.gene82637:intron | 20.0% |
| !!! | ATAATTTGTACATCATATCA+CGG | - | chr3.1:36845154-36845173 | None:intergenic | 20.0% |
| !!! | CACAATATTTTATACTAGAT+AGG | + | chr3.1:36845647-36845666 | MS.gene82637:intron | 20.0% |
| ! | TCAATACTATATATGCTGAT+TGG | + | chr3.1:36846196-36846215 | MS.gene82637:CDS | 25.0% |
| ! | TTATACTAGATAGGGTATAA+TGG | + | chr3.1:36845656-36845675 | MS.gene82637:intron | 25.0% |
| !! | GGTAATGATAATAATGGTTT+TGG | + | chr3.1:36845030-36845049 | MS.gene82637:intron | 25.0% |
| !! | TGATTGTTTTCAGAAATTCT+TGG | - | chr3.1:36844544-36844563 | None:intergenic | 25.0% |
| !!! | ATAAGTGTTGTTTTCTTCAT+AGG | + | chr3.1:36844848-36844867 | MS.gene82637:CDS | 25.0% |
| !!! | GATAATAATGGTTTTGGTTT+TGG | + | chr3.1:36845036-36845055 | MS.gene82637:intron | 25.0% |
| AAACAACACTTATCACCATA+AGG | - | chr3.1:36844841-36844860 | None:intergenic | 30.0% | |
| AGAATATGATCAACTACCTT+AGG | - | chr3.1:36845252-36845271 | None:intergenic | 30.0% | |
| CTATGCAAGAAATACTACAA+TGG | + | chr3.1:36844805-36844824 | MS.gene82637:CDS | 30.0% | |
| CTGTTTCAGTTTAAAAGCAA+TGG | + | chr3.1:36845308-36845327 | MS.gene82637:intron | 30.0% | |
| GAAGCAGGTAATGATAATAA+TGG | + | chr3.1:36845024-36845043 | MS.gene82637:intron | 30.0% | |
| TCTTGTTCCTTGAAAATTGA+GGG | - | chr3.1:36844519-36844538 | None:intergenic | 30.0% | |
| TTGTTAAATTGTCGCCATAA+CGG | + | chr3.1:36845371-36845390 | MS.gene82637:intron | 30.0% | |
| ! | ATTTGTCATAAGTTCAGGTT+TGG | + | chr3.1:36844631-36844650 | MS.gene82637:CDS | 30.0% |
| ! | GTGTGTGATATTTTCATGTT+TGG | + | chr3.1:36845204-36845223 | MS.gene82637:intron | 30.0% |
| ! | TTGTTTTCTTCATAGGCTTA+GGG | + | chr3.1:36844855-36844874 | MS.gene82637:CDS | 30.0% |
| ! | TTTCTTTGTTTGATGGAAGA+GGG | - | chr3.1:36844585-36844604 | None:intergenic | 30.0% |
| !! | TCATATTCTGAAAGAGCATT+TGG | + | chr3.1:36845263-36845282 | MS.gene82637:intron | 30.0% |
| AAAAACCAAGAGGAGAAACA+GGG | - | chr3.1:36845720-36845739 | None:intergenic | 35.0% | |
| AAGAGTCAGAAGAAGATACA+AGG | - | chr3.1:36846040-36846059 | None:intergenic | 35.0% | |
| AAGATTAAGGACTGTCACTA+TGG | + | chr3.1:36844994-36845013 | MS.gene82637:CDS | 35.0% | |
| AATCATCAGCAAAAACCAAG+AGG | - | chr3.1:36845730-36845749 | None:intergenic | 35.0% | |
| AGCAAATCATTCACAAGATG+GGG | + | chr3.1:36844782-36844801 | MS.gene82637:CDS | 35.0% | |
| ATATGATCAACTACCTTAGG+AGG | - | chr3.1:36845249-36845268 | None:intergenic | 35.0% | |
| CAAGAAATACTACAATGGTG+AGG | + | chr3.1:36844810-36844829 | MS.gene82637:CDS | 35.0% | |
| CAGCAAATCATTCACAAGAT+GGG | + | chr3.1:36844781-36844800 | MS.gene82637:CDS | 35.0% | |
| CTAAGACGAAGTCTTTACTT+TGG | + | chr3.1:36846154-36846173 | MS.gene82637:CDS | 35.0% | |
| CTAATAGTTTCGAAGGCAAT+AGG | + | chr3.1:36844938-36844957 | MS.gene82637:CDS | 35.0% | |
| CTCGTATTTGTCATAAGTTC+AGG | + | chr3.1:36844626-36844645 | MS.gene82637:CDS | 35.0% | |
| CTCTTGTTCCTTGAAAATTG+AGG | - | chr3.1:36844520-36844539 | None:intergenic | 35.0% | |
| CTTCCATCAAACAAAGAAAC+AGG | + | chr3.1:36844586-36844605 | MS.gene82637:CDS | 35.0% | |
| GCTACAATGGCTATTATATC+CGG | + | chr3.1:36845431-36845450 | MS.gene82637:intron | 35.0% | |
| TAGGTACAATGTTCACCTTT+CGG | - | chr3.1:36844664-36844683 | None:intergenic | 35.0% | |
| TATGATCAACTACCTTAGGA+GGG | - | chr3.1:36845248-36845267 | None:intergenic | 35.0% | |
| TATGTTTGACTGCAACGTTA+CGG | - | chr3.1:36845834-36845853 | None:intergenic | 35.0% | |
| TCAGCAAATCATTCACAAGA+TGG | + | chr3.1:36844780-36844799 | MS.gene82637:CDS | 35.0% | |
| TCGTTTCAAAGATATCGTTG+TGG | - | chr3.1:36844495-36844514 | None:intergenic | 35.0% | |
| TGACAACAGTATGTAAACCT+CGG | - | chr3.1:36845551-36845570 | None:intergenic | 35.0% | |
| TGATTCTTGGAAATCAAGAG+AGG | + | chr3.1:36844879-36844898 | MS.gene82637:CDS | 35.0% | |
| TGTCTGACTCATCAATAAGT+TGG | + | chr3.1:36845761-36845780 | MS.gene82637:intron | 35.0% | |
| TGTTATCATAAGTGGAAGGA+AGG | - | chr3.1:36845519-36845538 | None:intergenic | 35.0% | |
| TTTCAAAGATATCGTTGTGG+TGG | - | chr3.1:36844492-36844511 | None:intergenic | 35.0% | |
| ! | GTTTCTTTGTTTGATGGAAG+AGG | - | chr3.1:36844586-36844605 | None:intergenic | 35.0% |
| !! | CTCAATTTTCAAGGAACAAG+AGG | + | chr3.1:36844518-36844537 | MS.gene82637:CDS | 35.0% |
| !! | GATGGTTCTAATAGTTTCGA+AGG | + | chr3.1:36844931-36844950 | MS.gene82637:CDS | 35.0% |
| !! | GCATTAAGCATTGGAAGTAT+CGG | + | chr3.1:36844907-36844926 | MS.gene82637:CDS | 35.0% |
| !! | GTTGTTTTCTTCATAGGCTT+AGG | + | chr3.1:36844854-36844873 | MS.gene82637:CDS | 35.0% |
| !! | TAACATTTTAGCCACAATCG+TGG | + | chr3.1:36845897-36845916 | MS.gene82637:intron | 35.0% |
| AAAAATCTGGCACACAAGCA+TGG | - | chr3.1:36845481-36845500 | None:intergenic | 40.0% | |
| AACATTGTACCTATGCTCAC+GGG | + | chr3.1:36844671-36844690 | MS.gene82637:CDS | 40.0% | |
| AACATTTGCAACCACGATTG+TGG | - | chr3.1:36845911-36845930 | None:intergenic | 40.0% | |
| AAGATATCGTTGTGGTGGTA+TGG | - | chr3.1:36844487-36844506 | None:intergenic | 40.0% | |
| AATGGTGAGGAATGTCCTTA+TGG | + | chr3.1:36844823-36844842 | MS.gene82637:CDS | 40.0% | |
| ACCAAATGTCTTGCCAGTTT+CGG | + | chr3.1:36846071-36846090 | MS.gene82637:intron | 40.0% | |
| ACTTCCAATGCTTAATGCAC+AGG | - | chr3.1:36844905-36844924 | None:intergenic | 40.0% | |
| AGACGAAGTCTTTACTTTGG+TGG | + | chr3.1:36846157-36846176 | MS.gene82637:CDS | 40.0% | |
| ATAGCCATTGTAGCCTATAG+CGG | - | chr3.1:36845425-36845444 | None:intergenic | 40.0% | |
| ATAGGCTTAGGGATGATTCT+TGG | + | chr3.1:36844866-36844885 | MS.gene82637:CDS | 40.0% | |
| ATGATCAACTACCTTAGGAG+GGG | - | chr3.1:36845247-36845266 | None:intergenic | 40.0% | |
| CAAAAACCAAGAGGAGAAAC+AGG | - | chr3.1:36845721-36845740 | None:intergenic | 40.0% | |
| CAGAGCAGTGTTATCATAAG+TGG | - | chr3.1:36845527-36845546 | None:intergenic | 40.0% | |
| CATAAGTGGAAGGAAGGTTA+TGG | - | chr3.1:36845513-36845532 | None:intergenic | 40.0% | |
| CCATCAAACAAAGAAACAGG+CGG | + | chr3.1:36844589-36844608 | MS.gene82637:CDS | 40.0% | |
| CTGTTGTCAATTGTAGATCG+CGG | + | chr3.1:36845562-36845581 | MS.gene82637:intron | 40.0% | |
| GAACATTGTACCTATGCTCA+CGG | + | chr3.1:36844670-36844689 | MS.gene82637:CDS | 40.0% | |
| GAGGTTCATTTCTCATTGCA+AGG | + | chr3.1:36845783-36845802 | MS.gene82637:intron | 40.0% | |
| GCAATAGAATTGTTGTGCAG+CGG | - | chr3.1:36845610-36845629 | None:intergenic | 40.0% | |
| GCAGTGTTATCATAAGTGGA+AGG | - | chr3.1:36845523-36845542 | None:intergenic | 40.0% | |
| TAATGCAACTGCAGTTGTGA+TGG | + | chr3.1:36845856-36845875 | MS.gene82637:intron | 40.0% | |
| ! | AAACGAGCCCTCAATTTTCA+AGG | + | chr3.1:36844509-36844528 | MS.gene82637:CDS | 40.0% |
| ! | AAGAGGGCATATGAATGCAT+TGG | - | chr3.1:36844569-36844588 | None:intergenic | 40.0% |
| ! | AGGTTTGGTAATTGTCCGAA+AGG | + | chr3.1:36844646-36844665 | MS.gene82637:CDS | 40.0% |
| ! | ATGCTTGTGTGCCAGATTTT+TGG | + | chr3.1:36845480-36845499 | MS.gene82637:intron | 40.0% |
| ! | CTGACTCATCAATAAGTTGG+AGG | + | chr3.1:36845764-36845783 | MS.gene82637:intron | 40.0% |
| AAGGACTGTCACTATGGTCA+TGG | + | chr3.1:36845000-36845019 | MS.gene82637:CDS | 45.0% | |
| ACATTGTACCTATGCTCACG+GGG | + | chr3.1:36844672-36844691 | MS.gene82637:CDS | 45.0% | |
| AGCAAGTCTAAGTGTGGCAA+AGG | + | chr3.1:36846119-36846138 | MS.gene82637:CDS | 45.0% | |
| ATGGCAGCTAGCCAAAAATC+TGG | - | chr3.1:36845494-36845513 | None:intergenic | 45.0% | |
| GATGCTTGTAGGTGCATCAT+TGG | - | chr3.1:36846097-36846116 | None:intergenic | 45.0% | |
| GGGCACTTACTGGAAGATTA+AGG | + | chr3.1:36844981-36845000 | MS.gene82637:CDS | 45.0% | |
| GTTATCACACGAAAACGAGC+AGG | - | chr3.1:36845944-36845963 | None:intergenic | 45.0% | |
| TCTAAGTGTGGCAAAGGAAG+TGG | + | chr3.1:36846125-36846144 | MS.gene82637:CDS | 45.0% | |
| TTTGCCACACTTAGACTTGC+TGG | - | chr3.1:36846120-36846139 | None:intergenic | 45.0% | |
| ! | CCGCCTGTTTCTTTGTTTGA+TGG | - | chr3.1:36844592-36844611 | None:intergenic | 45.0% |
| ! | TTGCCACACTTAGACTTGCT+GGG | - | chr3.1:36846119-36846138 | None:intergenic | 45.0% |
| !! | AGCATTGGAAGTATCGGAGA+TGG | + | chr3.1:36844913-36844932 | MS.gene82637:CDS | 45.0% |
| AACCAAGAGGAGAAACAGGG+TGG | - | chr3.1:36845717-36845736 | None:intergenic | 50.0% | |
| ACATAAACTCGCCCCTCCTA+AGG | + | chr3.1:36845233-36845252 | MS.gene82637:intron | 50.0% | |
| CACTATGGTCATGGAGAAGC+AGG | + | chr3.1:36845009-36845028 | MS.gene82637:CDS | 50.0% | |
| CATCCCAGCAAGTCTAAGTG+TGG | + | chr3.1:36846113-36846132 | MS.gene82637:CDS | 50.0% | |
| CCAGCTAGCTCCTTCCAATT+CGG | - | chr3.1:36844721-36844740 | None:intergenic | 50.0% | |
| CGAGGAATGGATGCAGTTTC+TGG | + | chr3.1:36844750-36844769 | MS.gene82637:CDS | 50.0% | |
| GAGGCCTGTGCATTAAGCAT+TGG | + | chr3.1:36844898-36844917 | MS.gene82637:CDS | 50.0% | |
| GCACAAAATCCTCCATGCCT+TGG | - | chr3.1:36845399-36845418 | None:intergenic | 50.0% | |
| GCCGAAACTGGCAAGACATT+TGG | - | chr3.1:36846075-36846094 | None:intergenic | 50.0% | |
| GTCTGTGAACAAGCCAGCAA+GGG | + | chr3.1:36844960-36844979 | MS.gene82637:CDS | 50.0% | |
| TCTGTGAACAAGCCAGCAAG+GGG | + | chr3.1:36844961-36844980 | MS.gene82637:CDS | 50.0% | |
| TGATAACACTGCTCTGTCCG+AGG | + | chr3.1:36845531-36845550 | MS.gene82637:intron | 50.0% | |
| TGCAACTGCAGTTGTGATGG+CGG | + | chr3.1:36845859-36845878 | MS.gene82637:intron | 50.0% | |
| ! | ATCCGGCATGTTTCTGCCAT+AGG | + | chr3.1:36845448-36845467 | MS.gene82637:intron | 50.0% |
| ! | GATTTTGTGCCAGCCGCTAT+AGG | + | chr3.1:36845409-36845428 | MS.gene82637:intron | 50.0% |
| ! | TTCCACCCTGTTTCTCCTCT+TGG | + | chr3.1:36845712-36845731 | MS.gene82637:intron | 50.0% |
| !! | AGACTTGCTGGGATGCTTGT+AGG | - | chr3.1:36846108-36846127 | None:intergenic | 50.0% |
| ATAACGGCACCAAGGCATGG+AGG | + | chr3.1:36845387-36845406 | MS.gene82637:intron | 55.0% | |
| CCAGCCGCTATAGGCTACAA+TGG | + | chr3.1:36845418-36845437 | MS.gene82637:intron | 55.0% | |
| CCATTGTAGCCTATAGCGGC+TGG | - | chr3.1:36845421-36845440 | None:intergenic | 55.0% | |
| CCGAATTGGAAGGAGCTAGC+TGG | + | chr3.1:36844718-36844737 | MS.gene82637:CDS | 55.0% | |
| GCTAGCTCCTTCCAATTCGG+CGG | - | chr3.1:36844718-36844737 | None:intergenic | 55.0% | |
| GGCCTATGGCAGAAACATGC+CGG | - | chr3.1:36845453-36845472 | None:intergenic | 55.0% | |
| GGTCTGTGAACAAGCCAGCA+AGG | + | chr3.1:36844959-36844978 | MS.gene82637:CDS | 55.0% | |
| GGTGCATCATTGGCCGAAAC+TGG | - | chr3.1:36846087-36846106 | None:intergenic | 55.0% | |
| TAAGGAAGCCACCGCCGAAT+TGG | + | chr3.1:36844704-36844723 | MS.gene82637:CDS | 55.0% | |
| TGTACCTATGCTCACGGGGT+TGG | + | chr3.1:36844676-36844695 | MS.gene82637:CDS | 55.0% | |
| TTCCAGTAAGTGCCCCTTGC+TGG | - | chr3.1:36844976-36844995 | None:intergenic | 55.0% | |
| TTGTCGCCATAACGGCACCA+AGG | + | chr3.1:36845379-36845398 | MS.gene82637:intron | 55.0% | |
| ! | CAAGCATGGACTGTGGCCTA+TGG | - | chr3.1:36845467-36845486 | None:intergenic | 55.0% |
| ! | TGGCACACAAGCATGGACTG+TGG | - | chr3.1:36845474-36845493 | None:intergenic | 55.0% |
| !! | CTCACGGGGTTGGTGAGATA+AGG | + | chr3.1:36844686-36844705 | MS.gene82637:CDS | 55.0% |
| !! | TCCATGCCTTGGTGCCGTTA+TGG | - | chr3.1:36845388-36845407 | None:intergenic | 55.0% |
| AGCTCCTTCCAATTCGGCGG+TGG | - | chr3.1:36844715-36844734 | None:intergenic | 60.0% | |
| CTCACCAACCCCGTGAGCAT+AGG | - | chr3.1:36844683-36844702 | None:intergenic | 60.0% | |
| GAAGCCACCGCCGAATTGGA+AGG | + | chr3.1:36844708-36844727 | MS.gene82637:CDS | 60.0% | |
| GCCATAACGGCACCAAGGCA+TGG | + | chr3.1:36845384-36845403 | MS.gene82637:intron | 60.0% | |
| ! | CTGGCTCTCGCAACGAGGAA+TGG | + | chr3.1:36844737-36844756 | MS.gene82637:CDS | 60.0% |
| !! | AGCCAGCAAGGGGCACTTAC+TGG | + | chr3.1:36844971-36844990 | MS.gene82637:CDS | 60.0% |
| ! | GCTAGCTGGCTCTCGCAACG+AGG | + | chr3.1:36844732-36844751 | MS.gene82637:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 36844475 | 36846251 | 36844475 | ID=MS.gene82637 |
| chr3.1 | mRNA | 36844475 | 36846251 | 36844475 | ID=MS.gene82637.t1;Parent=MS.gene82637 |
| chr3.1 | exon | 36844475 | 36845030 | 36844475 | ID=MS.gene82637.t1.exon1;Parent=MS.gene82637.t1 |
| chr3.1 | CDS | 36844475 | 36845030 | 36844475 | ID=cds.MS.gene82637.t1;Parent=MS.gene82637.t1 |
| chr3.1 | exon | 36846088 | 36846251 | 36846088 | ID=MS.gene82637.t1.exon2;Parent=MS.gene82637.t1 |
| chr3.1 | CDS | 36846088 | 36846251 | 36846088 | ID=cds.MS.gene82637.t1;Parent=MS.gene82637.t1 |
| Gene Sequence |
| Protein sequence |
