AlfalfaGEDB | MS.gene82709

M. sativa cultivar XinJiangDaYe / MS.gene82709

KEGG: K02202
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82709.t1	XP_013459886.1	87.5	400	22	2	1	378	1	394	2.70E-196	694.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82709.t1	P29620	59.1	396	130	7	8	377	13	402	2.6e-123	443.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82709.t1	A0A072UWF7	87.5	400	22	2	1	378	1	394	2.0e-196	694.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82709.t1	MTR_3g054080	87.500	400	22	2	1	378	1	394	0.0	706
MS.gene82709.t1	MTR_6g080470	70.250	400	93	3	1	378	1	396	0.0	556
MS.gene82709.t1	MTR_2g032060	38.194	288	151	4	12	274	2	287	1.66e-59	194
MS.gene82709.t1	MTR_4g094430	39.446	289	146	5	12	274	2	287	4.89e-59	193
MS.gene82709.t1	MTR_3g040520	35.312	320	160	6	12	288	23	338	1.13e-56	193
MS.gene82709.t1	MTR_3g040810	35.312	320	160	6	12	288	21	336	2.78e-56	192
MS.gene82709.t1	MTR_4g103810	32.907	313	170	7	4	280	99	407	1.05e-52	181
MS.gene82709.t1	MTR_4g007750	36.156	307	151	8	12	276	2	305	3.94e-52	176
MS.gene82709.t1	MTR_4g103810	32.907	313	170	7	4	280	209	517	6.55e-52	181
MS.gene82709.t1	MTR_3g112210	34.768	302	163	8	13	283	31	329	6.70e-52	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82709.t1	AT1G18040	59.137	394	114	6	8	378	6	375	5.07e-158	449
MS.gene82709.t1	AT1G73690	58.524	393	126	6	8	378	5	382	2.13e-157	448
MS.gene82709.t1	AT1G66750	60.597	335	106	3	11	321	10	342	2.61e-140	403
MS.gene82709.t1	AT3G48750	39.792	289	145	5	12	274	2	287	2.44e-60	197
MS.gene82709.t1	AT5G64960	35.737	319	158	6	12	287	24	338	2.20e-57	195
MS.gene82709.t1	AT5G10270	35.737	319	158	6	12	287	24	338	7.08e-57	194
MS.gene82709.t1	AT4G19110	35.032	314	170	7	12	295	2	311	4.27e-56	191
MS.gene82709.t1	AT4G19110	35.032	314	170	7	12	295	2	311	4.73e-56	190
MS.gene82709.t1	AT1G67580	34.286	315	169	6	7	287	400	710	7.32e-56	195
MS.gene82709.t1	AT1G67580	34.286	315	169	6	7	287	400	710	7.32e-56	195

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Find 84 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTAGTGACATTGGTG+TGG	0.562858	3.1:+38194226	None:intergenic
AAAGCATCATCACTTGCCAT+TGG	0.534955	3.1:+38194656	None:intergenic
AAATTTAGTGACATTGGTGT+GGG	0.553074	3.1:+38194227	None:intergenic
AACTTGTTGATAGGACAAAA+TGG	0.313019	3.1:-38196035	MS.gene82709:intron
AAGCGTGAAGTTCTCGGTGA+AGG	0.573837	3.1:-38197237	MS.gene82709:CDS
AATGATGAATATTGTTTACC+TGG	0.531231	3.1:+38194163	None:intergenic
AATTCTAGCATTTGGATCGT+AGG	0.558175	3.1:+38194610	None:intergenic
ACTCTTCTAATCTTTCTAGA+AGG	0.398011	3.1:+38194359	None:intergenic
AGAGCGCCTGAGCTATTGTT+TGG	0.423515	3.1:-38195319	MS.gene82709:CDS
AGAGTGATGCCAAGGTGTGA+TGG	0.588215	3.1:-38194341	MS.gene82709:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTAGTGACATTGGTG+TGG	+	chr3.1:38197237-38197256	None:intergenic	30.0%
AAATTTAGTGACATTGGTGT+GGG	+	chr3.1:38197236-38197255	None:intergenic	30.0%
ACGGAAAAATTTAGTGACAT+TGG	+	chr3.1:38197242-38197261	None:intergenic	30.0%
ACTCTTCTAATCTTTCTAGA+AGG	+	chr3.1:38197104-38197123	None:intergenic	30.0%
ACTCTTCTCACTTCAAATAT+AGG	-	chr3.1:38194302-38194321	MS.gene82709:CDS	30.0%
AGGTAAGATTTAATATCAGC+TGG	+	chr3.1:38195335-38195354	None:intergenic	30.0%
ATAAAGAAACAAACCTGATC+AGG	+	chr3.1:38195512-38195531	None:intergenic	30.0%
ATGTTCATTCTGTTATCATG+TGG	-	chr3.1:38195041-38195060	MS.gene82709:intron	30.0%
CAAAGCTGTTTAAGTGATAT+AGG	-	chr3.1:38196416-38196435	MS.gene82709:intron	30.0%
CAATTAAGAAGATTCGGAAT+CGG	-	chr3.1:38195120-38195139	MS.gene82709:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	38194178	38197304	38194178	ID=MS.gene82709
chr3.1	mRNA	38194178	38197304	38194178	ID=MS.gene82709.t1;Parent=MS.gene82709
chr3.1	exon	38197200	38197304	38197200	ID=MS.gene82709.t1.exon1;Parent=MS.gene82709.t1
chr3.1	CDS	38197200	38197304	38197200	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1
chr3.1	exon	38196111	38196378	38196111	ID=MS.gene82709.t1.exon2;Parent=MS.gene82709.t1
chr3.1	CDS	38196111	38196378	38196111	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1
chr3.1	exon	38195965	38196044	38195965	ID=MS.gene82709.t1.exon3;Parent=MS.gene82709.t1
chr3.1	CDS	38195965	38196044	38195965	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1
chr3.1	exon	38195234	38195359	38195234	ID=MS.gene82709.t1.exon4;Parent=MS.gene82709.t1
chr3.1	CDS	38195234	38195359	38195234	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1
chr3.1	exon	38194584	38194819	38194584	ID=MS.gene82709.t1.exon5;Parent=MS.gene82709.t1
chr3.1	CDS	38194584	38194819	38194584	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1
chr3.1	exon	38194178	38194502	38194178	ID=MS.gene82709.t1.exon6;Parent=MS.gene82709.t1
chr3.1	CDS	38194178	38194502	38194178	ID=cds.MS.gene82709.t1;Parent=MS.gene82709.t1

Gene Sequence

>MS.gene82709

ATGGAAGAAGTGAATCCGTGTAAAAAATTAGCAGATAGGTATCTAAAGCGTGAAGTTCTCGGTGAAGGTACCTATGGTGTCGTTTTCAAAGCCATCGATACTCAGGTTGCTTTCTTTCTTTTTCACTCTTCTCACTTCAAATATAGGAGTATTGTTTTTTTTTTTCTTTCTTTCTTTCTTTTTCTTCTTATTATTGGCACGTGAATTGGGTTTTCCATAGAATTTGTTAGGTTAGTTGTAGGGAGACAAAGGGAAGAGAACATGTGGCCCTAATTGCTGATGTGTCGTACACGTGGATGTACAATGTATGCGTGACACTAGTTACGACGACGGTTCATAATGGCCGGTGCTTCACTTACTTAACACCATGCTAAAAAAGACACATAGTAGAGTAGATAAATATGATGCTTGTAGAGATTTTTATTGAAATTTAATAATTTCGGGTTATTGGTGGGACCAATTCAGTAATTTTTTGTTAGGTTTTTGATTGATGAAATTGAGTGTTTATTAAGTTTTAATATAAAAAATTATAAAATTGGTGATGTGTACATATATTGGTCCAAATTAAGCACCCAATATGGATGCTCTAATGTGGATGGTCTTAACGGAGATTGTTTACGACAAAGACTAAAAGATACATTCATGAACTATTTGTAACAAAGATGGAGATGAGTGTTTACTCTTTATTTAGAATAATCAGTCATTTTGGTTTGTAAATGTGTAACGAGAGATACATTCAATGATTTTTTATTTTTTTAAATTTTTTCATTAATTCGAAAACTATAGCAACAATGCCCAACACATCCAAAGACTAAGCTAATTGTGTACTTTTGGAGGGGTGTTGGTTGGTATACTAGTTGGTTATGTTCATTCTGTTATCATGTGGTTCTTAACTTCTTTTAAACACTTTTTCGTTTCATGGACAGACAGGACAAATGGTTGCAATTAAGAAGATTCGGAATCGGATTGATGAACCGATAGACGGAGTGAATTTTACAGCTCTTCGAGAAATTAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTGATTTGATTGATGTATTCCACTATAAACAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTTATAAGAGACAGGAATATTTTCCTTTCGCCAGCTGATATTAAATCTTACCTTCTAATGATACTACAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTCAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTCAAACTTGCAGATTTTGGTTTATCGCAGATATTTGGAGACCAAGATCACGAGTTCCCTGATCAGGTTTGTTTCTTTATGGATAATAATAGCTTATGGGAGCAAGTGCTTGGACGCCTTTGAAAATTAACTGATTACTTTTAATAAAAGTCAGCATTCATAGGCTGTTGTCTATGAAATTACAACTTAGATCATTCCGTTTCCTCATTATTTTGAAATCAAACCAGCAAAATTTGCACAAATTTTGGATGATTACAGTTCACAAGGCTGAAAAGGTTTTGTTTGACCAGGGTGTTATGCAGTGAATTTAACCTTGTATTGCATTGTTGGATGGTCGGGAAGTTTTTTTATTCCCCAGACCTAACAAGAACAAGCAGTGGGAAAAATATTCTTCTAGATTATAGAAATTTACTAGGTGTTGGTGTATGTGTTCAAGGATTGTGATTCTCGACAATAACCATGTCTTAGACTGACTGATTGCGAAGAGTGGTGTACAATCTATTAAACTAGTAGCAACATACGTACCTGCTTCTATAGGATAAATTTTTTCTTTTGGAATCCTTGTTTTGCTATATCTTGTGCATAGTATCGAACATTACTTGTTTCATATTATTTGTTTCTATTTTCACCTTTTCATAATGAATTTACAACTGACTTTTATACATTAATAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTGTTTGGCGCCAAGAAGTATGGTTCAAGTGTAGATGTTTGGGCTACAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTAGAGGTAAACCAAGATTGTCATGGTGATTAGGTTTATATATGGATTGCTTCTGTAGTAAATCATAACTGGTTTTTAATTATCCATCCCTTTTAACTACTTGACTTTTTTTAGGATGAGATCAACCATTTAATTTTGTCATCTAGTTTAAGTTGCTGTTTGTGTAAACTATTCAAAGCTGTTTAAGTGATATAGGATTAGGCAAGGGGCTGTTGCTTTGATGTTTATAGGCACTATTGACTATCTACGGCATTTTTAGTGAATTATGATTTGCCTTTCATCTTATTCTGTTTAGTTTTGTTTTTTGTTTTGGGGCAGATTTTTTTTTCTCTTTATAGTATCTAAGCATGTGATGTCATTTATTCCATTCATTGATTTGTTTTTCAACTTATTATGATCTGGCTTCTTTCGTTTTGGTAGGGTTCGACCGATACACATCAAACACGGAAGATTTTCACTGCATTTGGAACCCCATCACCTTCTCAGTGGCCTGATATGATGTACCTTAAATATTATATTCAAGAAAAATATATTCCTGCACCCCCGCTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTACGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACATAGGTATTGCATTAAACATATGCTAAAAAAATAATATATTATTTCCTGTCTTTTCCTATTATTTCAATCTCCCTTCCAATTCAGGTACTTTTCTTCCGCACCTCCGCCTACAGATCCAGAAAAGCTTCCAAGACCTGTTCCTAAGAGGGAATCTAGGGTCCCAGATCTGAATTCATTCGAGGGTCTCTCTCACATTCAATTATCACCTTCTAGAAAGATTAGAAGAGTGATGCCAAGGTGTGATGGATTTGAAGGCAATTCGTTGGAAGGCGATAAGATTGATGATAATGCTGGTAATTTCAAACAGACAGTTGGCGATAATACTGGCACGAATGAGCCCACACCAATGTCACTAAATTTTTCCGTCTTTGGATTAAAAGCTCCAAATAGACCCACCATTACCAGGTAA

Protein sequence

>MS.gene82709.t1

MEEVNPCKKLADRYLKREVLGEGTYGVVFKAIDTQTGQMVAIKKIRNRIDEPIDGVNFTALREIKLLKELKHPNIVDLIDVFHYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLLMILQGQNGQLKLADFGLSQIFGDQDHEFPDQAFARWYRAPELLFGAKKYGSSVDVWATACVFAELLLRRPFLEGSTDTHQTRKIFTAFGTPSPSQWPDMMYLKYYIQEKYIPAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQKALEHRYFSSAPPPTDPEKLPRPVPKRESRVPDLNSFEGLSHIQLSPSRKIRRVMPRCDGFEGNSLEGDKIDDNAGNFKQTVGDNTGTNEPTPMSLNFSVFGLKAPNRPTITR