Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82761.t1 | KEH24711.1 | 96.4 | 609 | 22 | 0 | 1 | 609 | 1 | 609 | 4.00E-242 | 847.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82761.t1 | Q9ZT96 | 48.0 | 50 | 26 | 0 | 538 | 587 | 441 | 490 | 1.9e-06 | 55.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82761.t1 | A0A072U5S3 | 96.4 | 609 | 22 | 0 | 1 | 609 | 1 | 609 | 2.9e-242 | 847.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene82761.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82761.t1 | MTR_6g003960 | 95.731 | 609 | 26 | 0 | 1 | 609 | 1 | 609 | 0.0 | 1147 |
MS.gene82761.t1 | MTR_4g084630 | 27.331 | 311 | 190 | 4 | 283 | 591 | 46 | 322 | 1.29e-35 | 137 |
MS.gene82761.t1 | MTR_4g070060 | 28.972 | 321 | 224 | 4 | 270 | 587 | 266 | 585 | 5.69e-34 | 137 |
MS.gene82761.t1 | MTR_2g034600 | 30.859 | 256 | 172 | 3 | 333 | 587 | 231 | 482 | 3.41e-31 | 127 |
MS.gene82761.t1 | MTR_2g034600 | 30.859 | 256 | 172 | 3 | 333 | 587 | 292 | 543 | 3.52e-31 | 128 |
MS.gene82761.t1 | MTR_2g034600 | 30.859 | 256 | 172 | 3 | 333 | 587 | 296 | 547 | 3.74e-31 | 128 |
MS.gene82761.t1 | MTR_5g041630 | 28.992 | 238 | 162 | 4 | 349 | 584 | 57 | 289 | 5.27e-25 | 106 |
MS.gene82761.t1 | MTR_1g115415 | 26.269 | 335 | 241 | 6 | 263 | 593 | 124 | 456 | 1.15e-24 | 108 |
MS.gene82761.t1 | MTR_5g068860 | 23.698 | 384 | 241 | 7 | 208 | 587 | 147 | 482 | 5.88e-24 | 106 |
MS.gene82761.t1 | MTR_5g068860 | 26.009 | 223 | 156 | 5 | 350 | 567 | 140 | 358 | 1.08e-13 | 74.3 |
MS.gene82761.t1 | MTR_2g067230 | 28.934 | 197 | 133 | 2 | 370 | 565 | 87 | 277 | 3.75e-21 | 95.5 |
MS.gene82761.t1 | MTR_5g094610 | 26.911 | 327 | 184 | 6 | 281 | 594 | 194 | 478 | 4.80e-20 | 94.0 |
MS.gene82761.t1 | MTR_2g049780 | 25.439 | 228 | 158 | 3 | 366 | 587 | 83 | 304 | 2.34e-18 | 86.7 |
MS.gene82761.t1 | MTR_7g081270 | 30.000 | 160 | 107 | 4 | 434 | 591 | 127 | 283 | 4.58e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82761.t1 | AT1G78930 | 50.958 | 522 | 247 | 5 | 78 | 597 | 70 | 584 | 0.0 | 524 |
MS.gene82761.t1 | AT4G38160 | 29.503 | 322 | 188 | 7 | 283 | 600 | 46 | 332 | 5.67e-36 | 139 |
MS.gene82761.t1 | AT4G38160 | 30.351 | 313 | 180 | 6 | 283 | 591 | 46 | 324 | 8.26e-36 | 137 |
MS.gene82761.t1 | AT4G38160 | 30.351 | 313 | 180 | 6 | 283 | 591 | 46 | 324 | 8.26e-36 | 137 |
MS.gene82761.t1 | AT4G38160 | 30.124 | 322 | 186 | 7 | 283 | 600 | 46 | 332 | 1.90e-35 | 137 |
MS.gene82761.t1 | AT2G21710 | 27.389 | 314 | 224 | 4 | 277 | 587 | 280 | 592 | 3.95e-31 | 129 |
MS.gene82761.t1 | AT4G14605 | 28.358 | 268 | 180 | 5 | 321 | 587 | 211 | 467 | 2.36e-30 | 125 |
MS.gene82761.t1 | AT4G14605 | 28.358 | 268 | 180 | 5 | 321 | 587 | 211 | 467 | 2.36e-30 | 125 |
MS.gene82761.t1 | AT2G03050 | 31.687 | 243 | 156 | 6 | 349 | 587 | 32 | 268 | 2.31e-28 | 115 |
MS.gene82761.t1 | AT2G03050 | 31.687 | 243 | 156 | 6 | 349 | 587 | 33 | 269 | 2.65e-28 | 115 |
MS.gene82761.t1 | AT2G36000 | 30.942 | 223 | 143 | 5 | 370 | 587 | 91 | 307 | 1.47e-23 | 102 |
MS.gene82761.t1 | AT2G36000 | 30.942 | 223 | 143 | 5 | 370 | 587 | 91 | 307 | 2.36e-23 | 102 |
MS.gene82761.t1 | AT4G02990 | 24.128 | 344 | 219 | 8 | 282 | 587 | 151 | 490 | 1.50e-22 | 102 |
MS.gene82761.t1 | AT4G02990 | 24.128 | 344 | 219 | 8 | 282 | 587 | 151 | 490 | 1.50e-22 | 102 |
MS.gene82761.t1 | AT5G55580 | 26.877 | 253 | 176 | 5 | 350 | 594 | 114 | 365 | 1.92e-21 | 97.4 |
MS.gene82761.t1 | AT2G21710 | 25.180 | 278 | 204 | 4 | 277 | 551 | 280 | 556 | 2.27e-21 | 98.6 |
MS.gene82761.t1 | AT2G21710 | 22.368 | 228 | 166 | 3 | 346 | 565 | 278 | 502 | 6.68e-13 | 72.0 |
MS.gene82761.t1 | AT2G44020 | 24.776 | 335 | 246 | 6 | 263 | 593 | 129 | 461 | 6.38e-21 | 97.1 |
MS.gene82761.t1 | AT5G55580 | 26.877 | 253 | 176 | 5 | 350 | 594 | 220 | 471 | 9.41e-21 | 96.3 |
MS.gene82761.t1 | AT2G21710 | 24.910 | 277 | 204 | 4 | 277 | 550 | 280 | 555 | 1.05e-20 | 96.7 |
MS.gene82761.t1 | AT2G21710 | 22.368 | 228 | 166 | 3 | 346 | 565 | 278 | 502 | 4.14e-13 | 72.8 |
MS.gene82761.t1 | AT2G34620 | 26.339 | 224 | 161 | 3 | 366 | 587 | 69 | 290 | 2.36e-19 | 89.7 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT1G61970 | 27.508 | 309 | 212 | 9 | 264 | 569 | 70 | 369 | 2.19e-18 | 88.2 |
MS.gene82761.t1 | AT3G18870 | 27.607 | 163 | 115 | 2 | 429 | 591 | 113 | 272 | 3.36e-17 | 82.8 |
MS.gene82761.t1 | AT1G62110 | 25.484 | 310 | 220 | 8 | 263 | 569 | 105 | 406 | 1.66e-15 | 79.7 |
MS.gene82761.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 264 | 569 | 70 | 369 | 2.96e-15 | 78.6 |
MS.gene82761.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 264 | 569 | 70 | 369 | 2.96e-15 | 78.6 |
MS.gene82761.t1 | AT1G61980 | 25.559 | 313 | 213 | 10 | 264 | 569 | 70 | 369 | 2.96e-15 | 78.6 |
MS.gene82761.t1 | AT1G62120 | 25.170 | 294 | 206 | 8 | 280 | 568 | 90 | 374 | 3.44e-15 | 78.6 |
MS.gene82761.t1 | AT1G61990 | 24.138 | 406 | 270 | 12 | 210 | 600 | 2 | 384 | 6.31e-15 | 77.8 |
MS.gene82761.t1 | AT1G61990 | 24.138 | 406 | 270 | 12 | 210 | 600 | 2 | 384 | 6.31e-15 | 77.8 |
MS.gene82761.t1 | AT1G62010 | 32.386 | 176 | 114 | 4 | 393 | 568 | 182 | 352 | 2.03e-14 | 76.3 |
MS.gene82761.t1 | AT1G62085 | 29.310 | 174 | 109 | 5 | 427 | 600 | 270 | 429 | 1.06e-13 | 74.3 |
MS.gene82761.t1 | AT1G62085 | 29.310 | 174 | 109 | 5 | 427 | 600 | 270 | 429 | 1.06e-13 | 74.3 |
MS.gene82761.t1 | AT1G61960 | 22.596 | 416 | 250 | 16 | 208 | 568 | 6 | 404 | 1.51e-13 | 73.6 |
MS.gene82761.t1 | AT3G46950 | 24.868 | 378 | 248 | 13 | 203 | 569 | 48 | 400 | 5.78e-12 | 68.6 |
MS.gene82761.t1 | AT5G55580 | 27.333 | 150 | 106 | 3 | 388 | 534 | 223 | 372 | 6.30e-12 | 68.2 |
MS.gene82761.t1 | AT5G23930 | 32.479 | 117 | 77 | 2 | 453 | 569 | 288 | 402 | 2.80e-11 | 66.6 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAAGGAAATTGCATTTA+TGG | 0.115303 | 6.1:-25727 | MS.gene82761:CDS |
TGTTATGTTCTTTGAAAATA+TGG | 0.137547 | 6.1:-26247 | MS.gene82761:CDS |
TTCACAAAGTATTCTCAATT+TGG | 0.141339 | 6.1:-32997 | MS.gene82761:CDS |
GATGCCAAAATTAGAATTTC+TGG | 0.144550 | 6.1:-25658 | MS.gene82761:CDS |
TTCACCAGAAATTCTAATTT+TGG | 0.159132 | 6.1:+25654 | None:intergenic |
CTGCGGGGATCCCAATATTT+TGG | 0.192705 | 6.1:+32248 | None:intergenic |
AGAATTTGCTGCTGAATTTA+TGG | 0.206246 | 6.1:-25484 | MS.gene82761:CDS |
CTGGATATTCTCCAAAATAT+TGG | 0.247372 | 6.1:-32259 | MS.gene82761:CDS |
TAGTGTGAGCGGGAGGAAAA+AGG | 0.267324 | 6.1:+32506 | None:intergenic |
GGTAGAAAGTGTTAGGGATT+TGG | 0.286024 | 6.1:-32767 | MS.gene82761:CDS |
GCACGGTCTGTCCATGTCTT+TGG | 0.290233 | 6.1:+30060 | None:intergenic |
CAAAAGACAACCTCAACTAT+TGG | 0.292015 | 6.1:-30034 | MS.gene82761:CDS |
TACCTTCACGGAATATAAAA+AGG | 0.292325 | 6.1:+31189 | None:intergenic |
TCAACATTCCAGAGCAAAAT+AGG | 0.293006 | 6.1:+32193 | None:intergenic |
AGACGTTCATATTGTCGTTC+TGG | 0.296095 | 6.1:-32928 | MS.gene82761:CDS |
TGCGTTTCCACATAAGATTC+AGG | 0.320950 | 6.1:-33055 | MS.gene82761:CDS |
AGAAGATAAAACCAAGATAT+CGG | 0.329241 | 6.1:-25566 | MS.gene82761:CDS |
GAATATCGAATGTAGCTTAA+AGG | 0.330400 | 6.1:-25529 | MS.gene82761:CDS |
ACATGTTGGTAGAAAGTGTT+AGG | 0.342505 | 6.1:-32774 | MS.gene82761:CDS |
TCACAAAGTATTCTCAATTT+GGG | 0.343251 | 6.1:-32996 | MS.gene82761:CDS |
ATTGAGTTCCTTAGGAGAAT+TGG | 0.350307 | 6.1:-26138 | MS.gene82761:CDS |
ATGTCAGACACAAGTAGTTC+TGG | 0.365444 | 6.1:+26075 | None:intergenic |
AGAGCAAGATTGAGTTCCTT+AGG | 0.365560 | 6.1:-26146 | MS.gene82761:CDS |
TAATCACATCTCATCTATAC+TGG | 0.369786 | 6.1:-32278 | MS.gene82761:CDS |
TTCTAAAGCTTACATTCCTT+TGG | 0.370275 | 6.1:-26112 | MS.gene82761:CDS |
TGGATATTCTCCAAAATATT+GGG | 0.384384 | 6.1:-32258 | MS.gene82761:CDS |
TCGCATCCCCAACATAATAT+TGG | 0.384825 | 6.1:-32224 | MS.gene82761:CDS |
GGAAAAGCCAATATTATGTT+GGG | 0.385050 | 6.1:+32217 | None:intergenic |
AAATACCTGTAGAAAGTCTT+CGG | 0.386329 | 6.1:+29897 | None:intergenic |
CATATTGTCGTTCTGGGATG+AGG | 0.397363 | 6.1:-32921 | MS.gene82761:CDS |
AAGCATTCAAGAGAACTATA+AGG | 0.404306 | 6.1:-31221 | MS.gene82761:CDS |
GAATTTGCTGCTGAATTTAT+GGG | 0.409909 | 6.1:-25483 | MS.gene82761:CDS |
GACGTTCATATTGTCGTTCT+GGG | 0.411201 | 6.1:-32927 | MS.gene82761:CDS |
AATACCTGTAGAAAGTCTTC+GGG | 0.414049 | 6.1:+29898 | None:intergenic |
CCTTTCAGAACCCGATATCT+TGG | 0.415637 | 6.1:+25555 | None:intergenic |
TCACTTCTCTTCTTCCATGC+TGG | 0.415823 | 6.1:-32743 | MS.gene82761:CDS |
AAAAGACAACCTCAACTATT+GGG | 0.416730 | 6.1:-30033 | MS.gene82761:CDS |
TTGAGAATACTTTGTGAAAG+TGG | 0.428065 | 6.1:+33002 | None:intergenic |
AACTAGCAAGCTGAAGTTGA+TGG | 0.435075 | 6.1:-30004 | MS.gene82761:CDS |
AGAAAGCAATTGGTGTGAAT+TGG | 0.437050 | 6.1:+33093 | None:intergenic |
TCTACTTGGGTACAGCATAA+AGG | 0.438005 | 6.1:-25688 | MS.gene82761:CDS |
ACTCCTTCAAACTAGAGTTC+TGG | 0.442934 | 6.1:-32170 | MS.gene82761:CDS |
GTTATGTTCTTTGAAAATAT+GGG | 0.445605 | 6.1:-26246 | MS.gene82761:CDS |
TTTCCTCTGAACTCCTAGTT+CGG | 0.462041 | 6.1:+29969 | None:intergenic |
GGGACACAGTAGTCTCTGAT+TGG | 0.463347 | 6.1:-32900 | MS.gene82761:CDS |
AGGCCAGAACTCTAGTTTGA+AGG | 0.466029 | 6.1:+32167 | None:intergenic |
TGCTATTGATTCGGATTCCT+CGG | 0.469322 | 6.1:+32819 | None:intergenic |
TCAACTTGAACTTCAACTAC+AGG | 0.473500 | 6.1:-32693 | MS.gene82761:CDS |
GCTGCTGAATTTATGGGTGT+TGG | 0.474476 | 6.1:-25477 | MS.gene82761:CDS |
GACAAGTGGAAGAAAGCAAT+TGG | 0.476718 | 6.1:+33083 | None:intergenic |
AATTTGGCGTACCTGGTTCA+AGG | 0.477280 | 6.1:+32147 | None:intergenic |
TGAGTTTGATGCTATTGATT+CGG | 0.480221 | 6.1:+32810 | None:intergenic |
GAAGATAAAACCAAGATATC+GGG | 0.481026 | 6.1:-25565 | MS.gene82761:CDS |
AGGAAAAGCCAATATTATGT+TGG | 0.485798 | 6.1:+32216 | None:intergenic |
AGTCTCTGATTGGGAACTGC+AGG | 0.486091 | 6.1:-32890 | MS.gene82761:CDS |
ATGTTGGGGATGCGATCTGC+GGG | 0.490612 | 6.1:+32232 | None:intergenic |
TGAGAATACTTTGTGAAAGT+GGG | 0.493211 | 6.1:+33003 | None:intergenic |
GAAATGATTCAATGAAGAAA+CGG | 0.495067 | 6.1:+32326 | None:intergenic |
CATTCTAGGTTCCAAAGACA+TGG | 0.510075 | 6.1:-30071 | MS.gene82761:intron |
CGAACATCCTGAATCTTATG+TGG | 0.510176 | 6.1:+33048 | None:intergenic |
ACACTACAATCATACCTTCA+CGG | 0.512801 | 6.1:+31177 | None:intergenic |
CATCTAGTGAAATTGATAAG+TGG | 0.514953 | 6.1:+32437 | None:intergenic |
ATCTAGTGAAATTGATAAGT+GGG | 0.520056 | 6.1:+32438 | None:intergenic |
AGTGAATAGCTAAAATACCT+AGG | 0.521625 | 6.1:+25594 | None:intergenic |
CAGCTTATCATGTGAAGACA+AGG | 0.524806 | 6.1:+25434 | None:intergenic |
TAGAAACACCAATTCTCCTA+AGG | 0.525753 | 6.1:+26130 | None:intergenic |
CTAGCTTACTTAGAGAGTCT+CGG | 0.531011 | 6.1:-32625 | MS.gene82761:CDS |
ACAAATGGGTGTGTCGGCCG+AGG | 0.532280 | 6.1:-32836 | MS.gene82761:CDS |
GGACACAGTAGTCTCTGATT+GGG | 0.532317 | 6.1:-32899 | MS.gene82761:CDS |
CTTCCTCAATGAATGTCGCC+AGG | 0.535977 | 6.1:-32591 | MS.gene82761:CDS |
GTAGATCAGTTTGCCGAACT+AGG | 0.537040 | 6.1:-29982 | MS.gene82761:CDS |
TCTTCAACAAATGGGTGTGT+CGG | 0.540277 | 6.1:-32842 | MS.gene82761:CDS |
ACCAACATGTTGAGATATGC+TGG | 0.540717 | 6.1:+32787 | None:intergenic |
ATAACAATACCGTTGAGGTA+AGG | 0.541814 | 6.1:+26044 | None:intergenic |
TGAGGCGAATATTCTTGATA+AGG | 0.543511 | 6.1:+32467 | None:intergenic |
GATGCTAATGCTAATGATGT+TGG | 0.543989 | 6.1:-32721 | MS.gene82761:CDS |
TAACTTTGTTAATGAGAGAC+GGG | 0.545763 | 6.1:+32545 | None:intergenic |
ATGTAGCTTAAAGGATATGC+TGG | 0.546025 | 6.1:-25520 | MS.gene82761:CDS |
TAGAGTTCTGGCCTTGAACC+AGG | 0.547091 | 6.1:-32158 | MS.gene82761:intron |
GTAACTTTGTTAATGAGAGA+CGG | 0.550712 | 6.1:+32544 | None:intergenic |
CTTCACATTGCAGCTCTCAA+AGG | 0.551295 | 6.1:-32661 | MS.gene82761:CDS |
ATAGTGTACTTTATGAAGCT+AGG | 0.563671 | 6.1:-25756 | MS.gene82761:CDS |
TGATGAGTAGTGTGAGCGGG+AGG | 0.570194 | 6.1:+32499 | None:intergenic |
TAGTGATGAGTAGTGTGAGC+GGG | 0.571600 | 6.1:+32496 | None:intergenic |
GATATCGGGTTCTGAAAGGA+AGG | 0.571698 | 6.1:-25551 | MS.gene82761:CDS |
CCAAGATATCGGGTTCTGAA+AGG | 0.573170 | 6.1:-25555 | MS.gene82761:CDS |
GTGAATAGCTAAAATACCTA+GGG | 0.575252 | 6.1:+25595 | None:intergenic |
CATGTTGGTAGAAAGTGTTA+GGG | 0.576782 | 6.1:-32773 | MS.gene82761:CDS |
GGATACTTTCTGATAACCAA+AGG | 0.580282 | 6.1:+26096 | None:intergenic |
ATATTGTCGTTCTGGGATGA+GGG | 0.584409 | 6.1:-32920 | MS.gene82761:CDS |
CAACTTGAACTTCAACTACA+GGG | 0.584755 | 6.1:-32692 | MS.gene82761:CDS |
GTTGAACAACCCAATAGTTG+AGG | 0.591010 | 6.1:+30024 | None:intergenic |
TTCTGGTGAACTCAATGAAG+AGG | 0.597466 | 6.1:-25641 | MS.gene82761:CDS |
TTAACAAAACCTTACCTCAA+CGG | 0.600806 | 6.1:-26053 | MS.gene82761:intron |
AGACGGGAGGGTGTCAGCGG+AGG | 0.601376 | 6.1:+32561 | None:intergenic |
GAAGCCCGAAGACTTTCTAC+AGG | 0.604401 | 6.1:-29902 | MS.gene82761:intron |
GGTGAACTCAATGAAGAGGC+CGG | 0.608350 | 6.1:-25637 | MS.gene82761:CDS |
TTGATAAGTGGGTCATGATG+AGG | 0.611276 | 6.1:+32449 | None:intergenic |
GAAGCTAGGACTTTCAGAGA+AGG | 0.613527 | 6.1:-25742 | MS.gene82761:CDS |
TATGTTGGGGATGCGATCTG+CGG | 0.616027 | 6.1:+32231 | None:intergenic |
TGTTGATGCTAAAATATCCG+TGG | 0.618761 | 6.1:-31255 | MS.gene82761:CDS |
TTTGTTAATGAGAGACGGGA+GGG | 0.619589 | 6.1:+32549 | None:intergenic |
GAGAGACGGGAGGGTGTCAG+CGG | 0.621038 | 6.1:+32558 | None:intergenic |
GAAAAGGTTCAAGCAAGGCG+TGG | 0.622427 | 6.1:-32385 | MS.gene82761:CDS |
GAAGAGGCCGGTACGAGACG+TGG | 0.624003 | 6.1:-25625 | MS.gene82761:CDS |
TAGCTCACCACGTCTCGTAC+CGG | 0.626755 | 6.1:+25618 | None:intergenic |
TTGCCGAACTAGGAGTTCAG+AGG | 0.629209 | 6.1:-29972 | MS.gene82761:CDS |
GAGAATACTTTGTGAAAGTG+GGG | 0.630001 | 6.1:+33004 | None:intergenic |
GAAAAGCCAATATTATGTTG+GGG | 0.630240 | 6.1:+32218 | None:intergenic |
GTTGATGCTAAAATATCCGT+GGG | 0.632158 | 6.1:-31254 | MS.gene82761:CDS |
ACCAGCATATCTCAACATGT+TGG | 0.632521 | 6.1:-32788 | MS.gene82761:CDS |
GAGACGTGGTGAGCTACCCT+AGG | 0.632788 | 6.1:-25611 | MS.gene82761:CDS |
GTCAGCGGAGGATATATACC+TGG | 0.634286 | 6.1:+32573 | None:intergenic |
ATTAGCATTAGCATCCAGCA+TGG | 0.634999 | 6.1:+32729 | None:intergenic |
TCTGATTGGGAACTGCAGGA+AGG | 0.638520 | 6.1:-32886 | MS.gene82761:CDS |
GAATCATAACAATACCGTTG+AGG | 0.640993 | 6.1:+26039 | None:intergenic |
GGCTTCTGTAATAATAGCTG+AGG | 0.649008 | 6.1:+29919 | None:intergenic |
ATACCTGGCGACATTCATTG+AGG | 0.650039 | 6.1:+32588 | None:intergenic |
TTTATGCTGTACCCAAGTAG+AGG | 0.651825 | 6.1:+25690 | None:intergenic |
ACATTCCAGAGCAAAATAGG+AGG | 0.652429 | 6.1:+32196 | None:intergenic |
CTTTGTTAATGAGAGACGGG+AGG | 0.652659 | 6.1:+32548 | None:intergenic |
GCAGCTCTCAAAGGTGACAA+CGG | 0.668388 | 6.1:-32652 | MS.gene82761:CDS |
AAGGTTCAAGCAAGGCGTGG+AGG | 0.673259 | 6.1:-32382 | MS.gene82761:CDS |
AAGCAGCATCTTGAGAAGCG+AGG | 0.673782 | 6.1:+32350 | None:intergenic |
GGAAACGCAGCATAGACAAG+TGG | 0.684763 | 6.1:+33069 | None:intergenic |
ATAGTGATGAGTAGTGTGAG+CGG | 0.686698 | 6.1:+32495 | None:intergenic |
CATTCAAGAGAACTATAAGG+AGG | 0.687484 | 6.1:-31218 | MS.gene82761:CDS |
AGCTTATCATGTGAAGACAA+GGG | 0.692707 | 6.1:+25435 | None:intergenic |
ACTTGGGTACAGCATAAAGG+AGG | 0.694799 | 6.1:-25685 | MS.gene82761:CDS |
ATGCTTGTAGATAGAACCCA+CGG | 0.695925 | 6.1:+31238 | None:intergenic |
TGTTGGGGATGCGATCTGCG+GGG | 0.717165 | 6.1:+32233 | None:intergenic |
AGTGATAACAAAAGTATACG+AGG | 0.730910 | 6.1:+32304 | None:intergenic |
TTATCATGTGAAGACAAGGG+AGG | 0.739674 | 6.1:+25438 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 25431 | 33124 | 25431 | ID=MS.gene82761 |
chr6.1 | mRNA | 25431 | 33124 | 25431 | ID=MS.gene82761.t1;Parent=MS.gene82761 |
chr6.1 | exon | 32159 | 33124 | 32159 | ID=MS.gene82761.t1.exon1;Parent=MS.gene82761.t1 |
chr6.1 | CDS | 32159 | 33124 | 32159 | ID=cds.MS.gene82761.t1;Parent=MS.gene82761.t1 |
chr6.1 | exon | 31192 | 31305 | 31192 | ID=MS.gene82761.t1.exon2;Parent=MS.gene82761.t1 |
chr6.1 | CDS | 31192 | 31305 | 31192 | ID=cds.MS.gene82761.t1;Parent=MS.gene82761.t1 |
chr6.1 | exon | 29903 | 30085 | 29903 | ID=MS.gene82761.t1.exon3;Parent=MS.gene82761.t1 |
chr6.1 | CDS | 29903 | 30085 | 29903 | ID=cds.MS.gene82761.t1;Parent=MS.gene82761.t1 |
chr6.1 | exon | 26054 | 26271 | 26054 | ID=MS.gene82761.t1.exon4;Parent=MS.gene82761.t1 |
chr6.1 | CDS | 26054 | 26271 | 26054 | ID=cds.MS.gene82761.t1;Parent=MS.gene82761.t1 |
chr6.1 | exon | 25431 | 25779 | 25431 | ID=MS.gene82761.t1.exon5;Parent=MS.gene82761.t1 |
chr6.1 | CDS | 25431 | 25779 | 25431 | ID=cds.MS.gene82761.t1;Parent=MS.gene82761.t1 |
Gene Sequence |
Protein sequence |