Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82865.t1 | XP_003618176.1 | 90.4 | 323 | 22 | 2 | 218 | 539 | 1 | 315 | 5.30E-161 | 577.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82865.t1 | Q9FIM0 | 35.7 | 143 | 85 | 3 | 223 | 362 | 6 | 144 | 2.9e-14 | 81.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82865.t1 | G7KHI2 | 90.4 | 323 | 22 | 2 | 218 | 539 | 1 | 315 | 3.8e-161 | 577.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene82865.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82865.t1 | MTR_6g005440 | 90.402 | 323 | 22 | 2 | 218 | 539 | 1 | 315 | 0.0 | 600 |
MS.gene82865.t1 | MTR_6g018920 | 63.873 | 346 | 101 | 3 | 218 | 539 | 1 | 346 | 1.76e-152 | 440 |
MS.gene82865.t1 | MTR_6g005450 | 64.368 | 348 | 97 | 5 | 218 | 539 | 1 | 347 | 9.09e-149 | 431 |
MS.gene82865.t1 | MTR_1g114730 | 59.831 | 356 | 100 | 6 | 218 | 539 | 1 | 347 | 5.23e-134 | 393 |
MS.gene82865.t1 | MTR_6g005430 | 91.667 | 216 | 18 | 0 | 1 | 216 | 1 | 216 | 1.99e-133 | 387 |
MS.gene82865.t1 | MTR_6g005430 | 90.556 | 180 | 17 | 0 | 1 | 180 | 1 | 180 | 5.53e-106 | 316 |
MS.gene82865.t1 | MTR_4g107170 | 40.385 | 156 | 90 | 1 | 218 | 373 | 1 | 153 | 4.49e-34 | 130 |
MS.gene82865.t1 | MTR_4g045977 | 38.043 | 184 | 109 | 3 | 218 | 401 | 1 | 179 | 3.95e-33 | 130 |
MS.gene82865.t1 | MTR_2g049610 | 39.877 | 163 | 92 | 2 | 218 | 380 | 1 | 157 | 5.13e-32 | 123 |
MS.gene82865.t1 | MTR_2g049530 | 38.312 | 154 | 90 | 2 | 220 | 372 | 5 | 154 | 1.95e-28 | 112 |
MS.gene82865.t1 | MTR_2g049630 | 36.774 | 155 | 93 | 2 | 219 | 372 | 4 | 154 | 5.96e-25 | 107 |
MS.gene82865.t1 | MTR_1g115290 | 37.719 | 114 | 70 | 1 | 261 | 374 | 8 | 120 | 7.24e-20 | 87.0 |
MS.gene82865.t1 | MTR_0061s0010 | 55.357 | 56 | 24 | 1 | 246 | 300 | 1 | 56 | 1.42e-15 | 73.9 |
MS.gene82865.t1 | MTR_3g466980 | 25.000 | 228 | 143 | 9 | 218 | 424 | 1 | 221 | 2.99e-13 | 69.7 |
MS.gene82865.t1 | MTR_3g031240 | 27.950 | 161 | 101 | 5 | 218 | 369 | 1 | 155 | 9.94e-13 | 67.4 |
MS.gene82865.t1 | MTR_3g102570 | 25.444 | 169 | 110 | 5 | 218 | 386 | 1 | 153 | 2.33e-12 | 68.6 |
MS.gene82865.t1 | MTR_3g088615 | 30.189 | 159 | 92 | 5 | 218 | 372 | 1 | 144 | 5.65e-12 | 65.1 |
MS.gene82865.t1 | MTR_1g029670 | 31.293 | 147 | 83 | 5 | 218 | 361 | 1 | 132 | 1.96e-11 | 63.5 |
MS.gene82865.t1 | MTR_8g087860 | 28.481 | 158 | 100 | 4 | 217 | 374 | 16 | 160 | 1.96e-11 | 64.7 |
MS.gene82865.t1 | MTR_5g021270 | 30.137 | 146 | 90 | 4 | 218 | 361 | 1 | 136 | 2.45e-11 | 64.3 |
MS.gene82865.t1 | MTR_5g021270 | 30.137 | 146 | 90 | 4 | 218 | 361 | 1 | 136 | 2.58e-11 | 64.3 |
MS.gene82865.t1 | MTR_3g466830 | 31.818 | 110 | 68 | 3 | 220 | 328 | 2 | 105 | 3.65e-11 | 62.0 |
MS.gene82865.t1 | MTR_8g086290 | 28.378 | 148 | 86 | 5 | 219 | 354 | 12 | 151 | 5.49e-11 | 62.0 |
MS.gene82865.t1 | MTR_2g461710 | 46.939 | 49 | 26 | 0 | 218 | 266 | 1 | 49 | 9.83e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82865.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 218 | 361 | 1 | 138 | 3.01e-24 | 102 |
MS.gene82865.t1 | AT5G55690 | 40.000 | 145 | 79 | 2 | 218 | 361 | 1 | 138 | 3.01e-24 | 102 |
MS.gene82865.t1 | AT5G58890 | 35.664 | 143 | 85 | 3 | 223 | 362 | 6 | 144 | 5.74e-18 | 85.1 |
MS.gene82865.t1 | AT3G18650 | 35.821 | 134 | 74 | 4 | 233 | 361 | 31 | 157 | 2.26e-16 | 81.6 |
MS.gene82865.t1 | AT1G22590 | 30.128 | 156 | 98 | 3 | 218 | 368 | 1 | 150 | 2.56e-15 | 74.3 |
MS.gene82865.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 218 | 266 | 1 | 49 | 6.61e-12 | 65.9 |
MS.gene82865.t1 | AT2G22630 | 55.102 | 49 | 22 | 0 | 218 | 266 | 1 | 49 | 6.61e-12 | 65.9 |
MS.gene82865.t1 | AT3G57390 | 32.576 | 132 | 68 | 3 | 218 | 334 | 1 | 126 | 1.22e-11 | 65.1 |
MS.gene82865.t1 | AT3G57390 | 32.576 | 132 | 68 | 3 | 218 | 334 | 1 | 126 | 1.64e-11 | 65.1 |
MS.gene82865.t1 | AT5G20240 | 49.020 | 51 | 26 | 0 | 218 | 268 | 1 | 51 | 7.85e-11 | 60.8 |
MS.gene82865.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 218 | 294 | 1 | 71 | 7.93e-11 | 62.4 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTCATACTGATTT+TGG | 0.072050 | 6.1:-1392202 | None:intergenic |
TCCCATGAATATCTACTTTA+TGG | 0.106807 | 6.1:+1392342 | MS.gene82865:CDS |
TTGATGAATAATATTGTAAA+TGG | 0.131880 | 6.1:-1385891 | None:intergenic |
CGACATTACTCGTTAAAATT+TGG | 0.146605 | 6.1:+1385775 | MS.gene82865:CDS |
GGAAATTGGTTAGGAGATTT+TGG | 0.164598 | 6.1:+1385823 | MS.gene82865:CDS |
TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | 6.1:-1391634 | None:intergenic |
GATGAATCTTACAATTCTTT+TGG | 0.252372 | 6.1:+1391820 | MS.gene82865:CDS |
CCAGGCATTGGATGCATCTT+AGG | 0.278948 | 6.1:+1385320 | MS.gene82865:intron |
TCTTGAACATCATAGGTCTT+AGG | 0.310978 | 6.1:-1391712 | None:intergenic |
CCTTACATGACCTCAAATTC+AGG | 0.349045 | 6.1:+1391958 | MS.gene82865:CDS |
CAACATATCCTTGGCCTTCA+AGG | 0.352632 | 6.1:-1391609 | None:intergenic |
AAGCTCTCAACCTTCCCTTA+TGG | 0.354140 | 6.1:+1392092 | MS.gene82865:CDS |
ATTTGTGCTGAGAAGGAATA+AGG | 0.356963 | 6.1:-1385919 | None:intergenic |
TGTGGAATATCTCTGGAAAT+TGG | 0.358829 | 6.1:+1385809 | MS.gene82865:CDS |
AACAATTGAGGTCATTTGTT+AGG | 0.359148 | 6.1:+1391848 | MS.gene82865:CDS |
GTCCTGTACTTCAACTTTGC+TGG | 0.359856 | 6.1:-1387032 | None:intergenic |
GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 6.1:+1391459 | MS.gene82865:CDS |
GTAATATGAGCTTTGTGAAC+TGG | 0.386953 | 6.1:-1392118 | None:intergenic |
AAAGATGAAGAATTTGTTGT+TGG | 0.387523 | 6.1:+1383395 | None:intergenic |
TGCGACAGTGCTTACAAGCT+TGG | 0.394563 | 6.1:+1385863 | MS.gene82865:CDS |
GCAAGCATATTGATGCTAAC+TGG | 0.394885 | 6.1:+1392145 | MS.gene82865:CDS |
TTGAATACTATCTATATCAT+AGG | 0.410651 | 6.1:-1392367 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.416188 | 6.1:-1391719 | None:intergenic |
TATCCTTGGCCTTCAAGGTT+GGG | 0.419769 | 6.1:-1391604 | None:intergenic |
CTGTATGCTCCCAACCTTGA+AGG | 0.420817 | 6.1:+1391595 | MS.gene82865:CDS |
ATTACTCGTTAAAATTTGGC+TGG | 0.426718 | 6.1:+1385779 | MS.gene82865:CDS |
TGATGAATAATATTGTAAAT+GGG | 0.426786 | 6.1:-1385890 | None:intergenic |
GAGCTTTGTGCCAATTGAAT+TGG | 0.430763 | 6.1:-1392075 | None:intergenic |
TTAACGAGTAATGTCGTCAA+TGG | 0.433387 | 6.1:-1385768 | None:intergenic |
AACATCAACATCACAAAGAA+TGG | 0.436469 | 6.1:-1391563 | None:intergenic |
AAAGATATGTGGAATATCTC+TGG | 0.437181 | 6.1:+1385802 | MS.gene82865:CDS |
AGGCTACTTCGTTCCATTCG+TGG | 0.443877 | 6.1:-1392406 | None:intergenic |
ATCCATAAAGTAGATATTCA+TGG | 0.445056 | 6.1:-1392344 | None:intergenic |
ACAAGTAGCTGAAGATGCTT+TGG | 0.447757 | 6.1:+1385704 | MS.gene82865:intron |
AAGATGAAGAATTTGTTGTT+GGG | 0.449039 | 6.1:+1383396 | None:intergenic |
ACTATGACACAACAATTGAT+AGG | 0.455411 | 6.1:+1391686 | MS.gene82865:CDS |
GGAGGAGTAGGCATAGCAAT+AGG | 0.462020 | 6.1:-1392297 | None:intergenic |
GGACTATAAGCTTCTTTGCC+TGG | 0.462036 | 6.1:+1387051 | MS.gene82865:CDS |
ATCTATGGAACTCATTCAAA+AGG | 0.463531 | 6.1:+1391474 | MS.gene82865:CDS |
AATATCTCTGGAAATTGGTT+AGG | 0.465889 | 6.1:+1385814 | MS.gene82865:CDS |
TTATCACAAATATTCATCAA+TGG | 0.474002 | 6.1:-1392033 | None:intergenic |
TTTCCATTGTAATAGTATGA+TGG | 0.479664 | 6.1:-1392252 | None:intergenic |
ATATTGTGTTCATAGAAAAT+GGG | 0.480214 | 6.1:+1391439 | MS.gene82865:intron |
CCTGAATTTGAGGTCATGTA+AGG | 0.483276 | 6.1:-1391958 | None:intergenic |
AAAGTAGATATTCATGGGAT+AGG | 0.486977 | 6.1:-1392338 | None:intergenic |
TTTCAGGTTCAACATATCCT+TGG | 0.488478 | 6.1:-1391618 | None:intergenic |
ACATAGACAGAGAATGGATT+GGG | 0.488637 | 6.1:-1385942 | None:intergenic |
TTTGTGAACTGGAAACCATA+AGG | 0.489071 | 6.1:-1392107 | None:intergenic |
TACCAGAATAGCGAAAATTA+CGG | 0.489276 | 6.1:-1383688 | None:intergenic |
AATTTGGCTGGAAAGATATG+TGG | 0.496007 | 6.1:+1385791 | MS.gene82865:CDS |
TAGTTAGAAGCAAGATTGAG+AGG | 0.496433 | 6.1:-1383662 | None:intergenic |
TCGTAGCGATTCATTAAACT+TGG | 0.496983 | 6.1:+1385740 | MS.gene82865:CDS |
TGCCAGCAAAGTTGAAGTAC+AGG | 0.498946 | 6.1:+1387030 | MS.gene82865:CDS |
ATATCCTTGGCCTTCAAGGT+TGG | 0.502086 | 6.1:-1391605 | None:intergenic |
GAAGTTGGTACCTGAATTTG+AGG | 0.503776 | 6.1:-1391968 | None:intergenic |
TGATGCTAACTGGACCCATC+AGG | 0.505363 | 6.1:+1392155 | MS.gene82865:CDS |
GATAACATTGCAAAAGAGAA+AGG | 0.505631 | 6.1:+1391510 | MS.gene82865:CDS |
TAACGAGTAATGTCGTCAAT+GGG | 0.508399 | 6.1:-1385767 | None:intergenic |
AATATGCAACTCACCGTTCG+TGG | 0.508416 | 6.1:-1385378 | None:intergenic |
CAAAATCAGTATGAAGAAGA+AGG | 0.510960 | 6.1:+1392203 | MS.gene82865:CDS |
TTGCCATCATACTATTACAA+TGG | 0.513046 | 6.1:+1392249 | MS.gene82865:CDS |
TTGTGAACTGGAAACCATAA+GGG | 0.517232 | 6.1:-1392106 | None:intergenic |
AACATAGACAGAGAATGGAT+TGG | 0.524926 | 6.1:-1385943 | None:intergenic |
TCATGTAAGGAGAACTGATA+AGG | 0.525088 | 6.1:-1391945 | None:intergenic |
TTGAATTGGCCAAAACCCTA+AGG | 0.530156 | 6.1:-1392061 | None:intergenic |
TAAAGATGATGTATCCAACT+TGG | 0.530838 | 6.1:+1391797 | MS.gene82865:CDS |
CTTCAAGGTTGGGAGCATAC+AGG | 0.533279 | 6.1:-1391594 | None:intergenic |
TAACATTAGCATTAACCTGA+TGG | 0.537085 | 6.1:-1392170 | None:intergenic |
GATTGGGATTTGTGCTGAGA+AGG | 0.541720 | 6.1:-1385926 | None:intergenic |
AGGTTTGCAAGATTCTGAAA+AGG | 0.545328 | 6.1:-1392318 | None:intergenic |
TCCATAAAGTAGATATTCAT+GGG | 0.546951 | 6.1:-1392343 | None:intergenic |
AGATTCTGAAAAGGAGGAGT+AGG | 0.549609 | 6.1:-1392309 | None:intergenic |
TTAGCATCAATATGCTTGCA+AGG | 0.558529 | 6.1:-1392141 | None:intergenic |
ATGCATACCAACATGTCTCA+AGG | 0.563493 | 6.1:+1391997 | MS.gene82865:CDS |
CTCTTACTTCAACATCAGCC+AGG | 0.563766 | 6.1:-1387069 | None:intergenic |
CAATTGTTCAACTCCACGAA+TGG | 0.569077 | 6.1:+1392393 | MS.gene82865:CDS |
GGTATGCATGAGATTGAAGT+TGG | 0.570442 | 6.1:-1391983 | None:intergenic |
TGTTCATAGAAAATGGGTCG+TGG | 0.571043 | 6.1:+1391445 | MS.gene82865:intron |
TGAATTGGCCAAAACCCTAA+GGG | 0.580427 | 6.1:-1392060 | None:intergenic |
AGTAGCTGAAGATGCTTTGG+TGG | 0.580961 | 6.1:+1385707 | MS.gene82865:intron |
ACATTGCAAAAGAGAAAGGA+TGG | 0.582137 | 6.1:+1391514 | MS.gene82865:CDS |
TTGTAAGATTCATCCCAAGT+TGG | 0.584895 | 6.1:-1391811 | None:intergenic |
AACATTAGCATTAACCTGAT+GGG | 0.586384 | 6.1:-1392169 | None:intergenic |
AAAGATGATGTATCCAACTT+GGG | 0.588589 | 6.1:+1391798 | MS.gene82865:CDS |
GCTCCCAACCTTGAAGGCCA+AGG | 0.597883 | 6.1:+1391601 | MS.gene82865:CDS |
TTTACAAAGTGCGTAAAGAG+AGG | 0.599078 | 6.1:+1391773 | MS.gene82865:CDS |
TTTGCAAGATTCTGAAAAGG+AGG | 0.605154 | 6.1:-1392315 | None:intergenic |
TGCATACCAACATGTCTCAA+GGG | 0.610432 | 6.1:+1391998 | MS.gene82865:CDS |
TAGCATCAATATGCTTGCAA+GGG | 0.621207 | 6.1:-1392140 | None:intergenic |
TGGATGCATCTTAGGCGCGT+CGG | 0.636084 | 6.1:+1385328 | MS.gene82865:CDS |
TGGTTTAATAAAGAAAGCAA+AGG | 0.644031 | 6.1:+1391534 | MS.gene82865:CDS |
GAACTGGAAACCATAAGGGA+AGG | 0.661731 | 6.1:-1392102 | None:intergenic |
ACTATAGCTTATGCCACGAA+CGG | 0.674967 | 6.1:+1385365 | MS.gene82865:CDS |
GATATGTTGAACCTGAAACA+TGG | 0.676143 | 6.1:+1391623 | MS.gene82865:CDS |
AAACTTTCACAATCAAAACG+TGG | 0.688285 | 6.1:+1383623 | MS.gene82865:CDS |
ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 6.1:+1391642 | MS.gene82865:CDS |
CAGAATAGCGAAAATTACGG+AGG | 0.722843 | 6.1:-1383685 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 1383399 | 1392425 | 1383399 | ID=MS.gene82865 |
chr6.1 | mRNA | 1383399 | 1392425 | 1383399 | ID=MS.gene82865.t1;Parent=MS.gene82865 |
chr6.1 | exon | 1383399 | 1383495 | 1383399 | ID=MS.gene82865.t1.exon1;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1383399 | 1383495 | 1383399 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1383597 | 1383707 | 1383597 | ID=MS.gene82865.t1.exon2;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1383597 | 1383707 | 1383597 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1385324 | 1385386 | 1385324 | ID=MS.gene82865.t1.exon3;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1385324 | 1385386 | 1385324 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1385712 | 1385977 | 1385712 | ID=MS.gene82865.t1.exon4;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1385712 | 1385977 | 1385712 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1386143 | 1386190 | 1386143 | ID=MS.gene82865.t1.exon5;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1386143 | 1386190 | 1386143 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1387022 | 1387084 | 1387022 | ID=MS.gene82865.t1.exon6;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1387022 | 1387084 | 1387022 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
chr6.1 | exon | 1391454 | 1392425 | 1391454 | ID=MS.gene82865.t1.exon7;Parent=MS.gene82865.t1 |
chr6.1 | CDS | 1391454 | 1392425 | 1391454 | ID=cds.MS.gene82865.t1;Parent=MS.gene82865.t1 |
Gene Sequence |
Protein sequence |