Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82866.t1 | RHN49743.1 | 84.6 | 356 | 44 | 4 | 1 | 354 | 9 | 355 | 2.60E-148 | 535 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82866.t1 | Q9FIM0 | 34.0 | 141 | 90 | 2 | 6 | 145 | 6 | 144 | 1.8e-12 | 75.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82866.t1 | G7KHI3 | 84.6 | 356 | 44 | 4 | 1 | 354 | 1 | 347 | 1.9e-148 | 535.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene82866.t1 | TF | MADS-M-type |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82866.t1 | MTR_6g005450 | 83.989 | 356 | 46 | 4 | 1 | 354 | 1 | 347 | 0.0 | 591 |
MS.gene82866.t1 | MTR_6g018920 | 66.480 | 358 | 104 | 3 | 1 | 354 | 1 | 346 | 1.09e-167 | 471 |
MS.gene82866.t1 | MTR_6g005440 | 63.037 | 349 | 88 | 5 | 1 | 348 | 1 | 309 | 4.85e-151 | 428 |
MS.gene82866.t1 | MTR_1g114730 | 60.942 | 361 | 108 | 5 | 1 | 347 | 1 | 342 | 1.94e-140 | 402 |
MS.gene82866.t1 | MTR_4g107170 | 37.427 | 171 | 99 | 2 | 1 | 171 | 1 | 163 | 8.75e-31 | 117 |
MS.gene82866.t1 | MTR_2g049610 | 34.906 | 212 | 115 | 3 | 1 | 212 | 1 | 189 | 3.81e-30 | 115 |
MS.gene82866.t1 | MTR_4g045977 | 34.731 | 167 | 106 | 1 | 1 | 167 | 1 | 164 | 1.61e-27 | 112 |
MS.gene82866.t1 | MTR_2g049530 | 37.013 | 154 | 92 | 2 | 3 | 155 | 5 | 154 | 2.67e-27 | 106 |
MS.gene82866.t1 | MTR_2g049630 | 34.857 | 175 | 109 | 2 | 2 | 175 | 4 | 174 | 8.19e-25 | 103 |
MS.gene82866.t1 | MTR_1g115290 | 32.117 | 137 | 92 | 1 | 43 | 179 | 7 | 142 | 1.46e-21 | 90.1 |
MS.gene82866.t1 | MTR_0061s0010 | 62.069 | 58 | 19 | 1 | 29 | 86 | 1 | 55 | 2.11e-19 | 83.6 |
MS.gene82866.t1 | MTR_3g466890 | 33.537 | 164 | 93 | 6 | 3 | 157 | 2 | 158 | 1.87e-14 | 70.9 |
MS.gene82866.t1 | MTR_3g031240 | 31.746 | 126 | 79 | 3 | 1 | 125 | 1 | 120 | 2.37e-14 | 70.9 |
MS.gene82866.t1 | MTR_1g090710 | 33.607 | 122 | 72 | 4 | 1 | 122 | 1 | 113 | 3.76e-14 | 69.7 |
MS.gene82866.t1 | MTR_5g075380 | 30.303 | 165 | 101 | 5 | 1 | 157 | 1 | 159 | 7.34e-14 | 68.9 |
MS.gene82866.t1 | MTR_3g466980 | 23.504 | 234 | 147 | 8 | 1 | 215 | 1 | 221 | 1.29e-13 | 69.7 |
MS.gene82866.t1 | MTR_3g466830 | 33.636 | 110 | 66 | 3 | 3 | 111 | 2 | 105 | 3.25e-13 | 67.4 |
MS.gene82866.t1 | MTR_4g032620 | 38.136 | 118 | 58 | 5 | 1 | 117 | 1 | 104 | 4.30e-13 | 68.6 |
MS.gene82866.t1 | MTR_5g047580 | 29.688 | 128 | 77 | 3 | 1 | 128 | 1 | 115 | 5.12e-13 | 66.6 |
MS.gene82866.t1 | MTR_4g063790 | 27.684 | 177 | 110 | 5 | 1 | 165 | 1 | 171 | 2.54e-12 | 65.1 |
MS.gene82866.t1 | MTR_3g065100 | 26.939 | 245 | 141 | 9 | 1 | 215 | 1 | 237 | 3.15e-12 | 66.2 |
MS.gene82866.t1 | MTR_2g016210 | 33.333 | 108 | 64 | 4 | 2 | 108 | 3 | 103 | 3.32e-12 | 66.2 |
MS.gene82866.t1 | MTR_1g090697 | 28.994 | 169 | 93 | 5 | 1 | 155 | 1 | 156 | 3.54e-12 | 64.3 |
MS.gene82866.t1 | MTR_8g036130 | 33.962 | 106 | 61 | 4 | 1 | 103 | 1 | 100 | 4.21e-12 | 65.9 |
MS.gene82866.t1 | MTR_3g031100 | 27.778 | 126 | 84 | 3 | 1 | 125 | 1 | 120 | 1.57e-11 | 63.9 |
MS.gene82866.t1 | MTR_1g077390 | 32.143 | 112 | 70 | 3 | 1 | 112 | 1 | 106 | 4.23e-11 | 61.2 |
MS.gene82866.t1 | MTR_1g090783 | 40.506 | 79 | 41 | 3 | 3 | 81 | 2 | 74 | 6.61e-11 | 60.5 |
MS.gene82866.t1 | MTR_8g086290 | 28.289 | 152 | 79 | 5 | 2 | 136 | 12 | 150 | 8.98e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82866.t1 | AT5G55690 | 33.209 | 268 | 129 | 12 | 1 | 257 | 1 | 229 | 1.42e-25 | 104 |
MS.gene82866.t1 | AT5G55690 | 33.209 | 268 | 129 | 12 | 1 | 257 | 1 | 229 | 1.42e-25 | 104 |
MS.gene82866.t1 | AT5G58890 | 34.507 | 142 | 88 | 3 | 6 | 145 | 6 | 144 | 4.36e-17 | 80.9 |
MS.gene82866.t1 | AT1G22590 | 29.814 | 161 | 102 | 4 | 1 | 156 | 1 | 155 | 2.08e-14 | 70.9 |
MS.gene82866.t1 | AT3G18650 | 36.296 | 135 | 72 | 5 | 16 | 144 | 31 | 157 | 2.58e-14 | 73.9 |
MS.gene82866.t1 | AT3G05860 | 36.364 | 77 | 43 | 2 | 1 | 77 | 1 | 71 | 2.28e-12 | 65.9 |
MS.gene82866.t1 | AT3G05860 | 37.662 | 77 | 42 | 3 | 1 | 77 | 1 | 71 | 2.33e-12 | 66.6 |
MS.gene82866.t1 | AT3G05860 | 37.662 | 77 | 42 | 3 | 1 | 77 | 1 | 71 | 3.08e-12 | 66.6 |
MS.gene82866.t1 | AT1G65330 | 25.087 | 287 | 158 | 13 | 3 | 283 | 2 | 237 | 4.84e-12 | 66.2 |
MS.gene82866.t1 | AT1G31640 | 21.930 | 228 | 146 | 8 | 3 | 222 | 2 | 205 | 1.56e-11 | 65.9 |
MS.gene82866.t1 | AT2G28700 | 24.468 | 188 | 128 | 5 | 1 | 185 | 1 | 177 | 2.81e-11 | 64.3 |
Find 62 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGTCTTTCGGCCATGTTTC+AGG | 0.186338 | 6.1:-1396610 | None:intergenic |
AAGCTCTCAACCTTCTTCTA+TGG | 0.280995 | 6.1:+1397128 | MS.gene82866:CDS |
TTGAAGAATATTTGTATCAT+AGG | 0.296113 | 6.1:-1397439 | None:intergenic |
ATCTTCCTAGATTTCTCCTT+TGG | 0.315866 | 6.1:-1396466 | None:intergenic |
TATGCTAGAAGGAGATCTTC+TGG | 0.319876 | 6.1:+1396888 | MS.gene82866:CDS |
CTTCTACCATGTAGAGTCTA+AGG | 0.320406 | 6.1:+1397167 | MS.gene82866:CDS |
GATGAATCTTTCAATTCTCT+TGG | 0.359377 | 6.1:+1396796 | MS.gene82866:CDS |
AAAATATTCTTGAACATCAT+AGG | 0.366937 | 6.1:-1396695 | None:intergenic |
CTTTATGCTCCCAACTTTGA+AGG | 0.375391 | 6.1:+1396571 | MS.gene82866:CDS |
GAGGTTATTTGCTAGGATCT+TGG | 0.377459 | 6.1:+1396831 | MS.gene82866:CDS |
TACCCTTGGCCTTCAAAGTT+GGG | 0.389570 | 6.1:-1396580 | None:intergenic |
TTTCGGCCATGTTTCAGGTT+CGG | 0.407707 | 6.1:-1396605 | None:intergenic |
GTATTGCAAAAGAGAAAGAT+TGG | 0.420157 | 6.1:+1396490 | MS.gene82866:CDS |
CTAAAGATGAATATGCTAGA+AGG | 0.421397 | 6.1:+1396877 | MS.gene82866:CDS |
ATTCATTAAGTAGATGTTCA+TGG | 0.428966 | 6.1:-1397416 | None:intergenic |
TCATTCCAAAGGAGAAATCT+AGG | 0.429671 | 6.1:+1396461 | MS.gene82866:CDS |
TGCACGAGATTGAGGCTACT+TGG | 0.432844 | 6.1:-1396979 | None:intergenic |
AAACTTCTCTTTGCGCACTT+TGG | 0.438281 | 6.1:-1396752 | None:intergenic |
GCCACCAATGATCTCAAAAT+CGG | 0.446186 | 6.1:+1397261 | MS.gene82866:CDS |
ACTTGGATTTGAGTCTAAGT+AGG | 0.446409 | 6.1:-1396962 | None:intergenic |
TAAGTAGATGTTCATGGGAT+AGG | 0.458812 | 6.1:-1397410 | None:intergenic |
ACTATAACACAACAATTGAT+AGG | 0.461207 | 6.1:+1396662 | MS.gene82866:CDS |
ATACCCTTGGCCTTCAAAGT+TGG | 0.461392 | 6.1:-1396581 | None:intergenic |
TTAAGATGAAGTATCAAACT+TGG | 0.470449 | 6.1:+1396773 | MS.gene82866:CDS |
TTTCAGGTTCGGCATACCCT+TGG | 0.475656 | 6.1:-1396594 | None:intergenic |
AACAATTGAGGTTATTTGCT+AGG | 0.476502 | 6.1:+1396824 | MS.gene82866:CDS |
TTAAAATCAATCTGCTTGCA+AGG | 0.480005 | 6.1:-1397213 | None:intergenic |
AAGCTCTCAACCCTCTCATA+TGG | 0.482453 | 6.1:+1397092 | MS.gene82866:CDS |
ATGCTAGAAGGAGATCTTCT+GGG | 0.483728 | 6.1:+1396889 | MS.gene82866:CDS |
TAAGTGGCCAAAACCCTAAA+GGG | 0.486281 | 6.1:-1397059 | None:intergenic |
AGCATCGACATCACAAAGAA+TGG | 0.487435 | 6.1:-1396539 | None:intergenic |
TTATCACTAATATTCATCAA+TGG | 0.491553 | 6.1:-1397033 | None:intergenic |
CTCTTGGAGATGAACAATTG+AGG | 0.499688 | 6.1:+1396812 | MS.gene82866:CDS |
GGAAGAGCAGGCATAGCAAT+GGG | 0.507599 | 6.1:-1397369 | None:intergenic |
TTCATTAAGTAGATGTTCAT+GGG | 0.507722 | 6.1:-1397415 | None:intergenic |
ATGGTAGAAGCTCTGTGCTC+GGG | 0.509126 | 6.1:-1397154 | None:intergenic |
GCTCCCAACTTTGAAGGCCA+AGG | 0.510014 | 6.1:+1396577 | MS.gene82866:CDS |
GAGCTTTGACCCGATATAAG+TGG | 0.512541 | 6.1:-1397075 | None:intergenic |
ATAAGTGGCCAAAACCCTAA+AGG | 0.517760 | 6.1:-1397060 | None:intergenic |
CTTGGATTTGAGTCTAAGTA+GGG | 0.520886 | 6.1:-1396961 | None:intergenic |
TGGCATTAGCATCAACATGA+TGG | 0.525287 | 6.1:-1397242 | None:intergenic |
CATGGTAGAAGCTCTGTGCT+CGG | 0.530303 | 6.1:-1397155 | None:intergenic |
TGTTCGCAGCAAATGGGTCG+TGG | 0.537698 | 6.1:+1396421 | None:intergenic |
TAAGATGAAGTATCAAACTT+GGG | 0.559208 | 6.1:+1396774 | MS.gene82866:CDS |
TGCAGTTGAAACCATATGAG+AGG | 0.566645 | 6.1:-1397103 | None:intergenic |
TGTTCAACTACATGTATGAA+AGG | 0.567684 | 6.1:+1397469 | MS.gene82866:CDS |
GGCATTAGCATCAACATGAT+GGG | 0.570214 | 6.1:-1397241 | None:intergenic |
TACCATGTAGAGTCTAAGGC+AGG | 0.584231 | 6.1:+1397171 | MS.gene82866:CDS |
ATCTGTGGAATTCATTCCAA+AGG | 0.586943 | 6.1:+1396450 | MS.gene82866:CDS |
CTCCCAACTTTGAAGGCCAA+GGG | 0.588006 | 6.1:+1396578 | MS.gene82866:CDS |
TCACTAATATTCATCAATGG+AGG | 0.597003 | 6.1:-1397030 | None:intergenic |
GTATTTCCGTTGTAATAGTG+TGG | 0.597710 | 6.1:-1397327 | None:intergenic |
TAAAATCAATCTGCTTGCAA+GGG | 0.599195 | 6.1:-1397212 | None:intergenic |
GCTCGGGAAACCATAGAAGA+AGG | 0.599676 | 6.1:-1397138 | None:intergenic |
AGGAAGAGCAGGCATAGCAA+TGG | 0.601693 | 6.1:-1397370 | None:intergenic |
AGGTGCAAAGAATTCTTCAA+AGG | 0.603453 | 6.1:+1396638 | MS.gene82866:CDS |
TACCTGCCTTAGACTCTACA+TGG | 0.609420 | 6.1:-1397173 | None:intergenic |
TTAGCACCACACTATTACAA+CGG | 0.610413 | 6.1:+1397321 | MS.gene82866:CDS |
GGGTCGTGGAAGAGTATCTG+TGG | 0.635324 | 6.1:+1396435 | MS.gene82866:CDS |
GGTATGCCGAACCTGAAACA+TGG | 0.643156 | 6.1:+1396599 | MS.gene82866:CDS |
ATGGCCGAAAGACACAAAAG+AGG | 0.657999 | 6.1:+1396618 | MS.gene82866:CDS |
GCAGTTGAAACCATATGAGA+GGG | 0.704855 | 6.1:-1397102 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6.1:1396698-1396717 | None:intergenic | 20.0% |
!! | TTATCACTAATATTCATCAA+TGG | - | chr6.1:1397036-1397055 | None:intergenic | 20.0% |
!! | TTGAAGAATATTTGTATCAT+AGG | - | chr6.1:1397442-1397461 | None:intergenic | 20.0% |
!!! | TTCAAGAATATTTTAACGAA+AGG | + | chr6.1:1396704-1396723 | MS.gene82866:CDS | 20.0% |
! | ACTATAACACAACAATTGAT+AGG | + | chr6.1:1396662-1396681 | MS.gene82866:CDS | 25.0% |
! | ATTAGTGATAAAAACCCTTT+AGG | + | chr6.1:1397045-1397064 | MS.gene82866:CDS | 25.0% |
! | ATTCATTAAGTAGATGTTCA+TGG | - | chr6.1:1397419-1397438 | None:intergenic | 25.0% |
! | TTAGTGATAAAAACCCTTTA+GGG | + | chr6.1:1397046-1397065 | MS.gene82866:CDS | 25.0% |
! | TTCATTAAGTAGATGTTCAT+GGG | - | chr6.1:1397418-1397437 | None:intergenic | 25.0% |
!! | TAAGATGAAGTATCAAACTT+GGG | + | chr6.1:1396774-1396793 | MS.gene82866:CDS | 25.0% |
!! | TTAAGATGAAGTATCAAACT+TGG | + | chr6.1:1396773-1396792 | MS.gene82866:CDS | 25.0% |
!!! | AGGTTTGAAAGATTTTGAAA+AGG | - | chr6.1:1397393-1397412 | None:intergenic | 25.0% |
AACAATTGAGGTTATTTGCT+AGG | + | chr6.1:1396824-1396843 | MS.gene82866:CDS | 30.0% | |
CTAAAGATGAATATGCTAGA+AGG | + | chr6.1:1396877-1396896 | MS.gene82866:CDS | 30.0% | |
GATGAATCTTTCAATTCTCT+TGG | + | chr6.1:1396796-1396815 | MS.gene82866:CDS | 30.0% | |
GTATTGCAAAAGAGAAAGAT+TGG | + | chr6.1:1396490-1396509 | MS.gene82866:CDS | 30.0% | |
TAAAATCAATCTGCTTGCAA+GGG | - | chr6.1:1397215-1397234 | None:intergenic | 30.0% | |
TCACTAATATTCATCAATGG+AGG | - | chr6.1:1397033-1397052 | None:intergenic | 30.0% | |
TGGTTTGATGAAAAAAGTTG+AGG | + | chr6.1:1396510-1396529 | MS.gene82866:CDS | 30.0% | |
TGTTCAACTACATGTATGAA+AGG | + | chr6.1:1397469-1397488 | MS.gene82866:CDS | 30.0% | |
TTAAAATCAATCTGCTTGCA+AGG | - | chr6.1:1397216-1397235 | None:intergenic | 30.0% | |
!! | GCAAGCAGATTGATTTTAAT+TGG | + | chr6.1:1397217-1397236 | MS.gene82866:CDS | 30.0% |
!!! | ATAAAAACCCTTTAGGGTTT+TGG | + | chr6.1:1397052-1397071 | MS.gene82866:CDS | 30.0% |
ACTTGGATTTGAGTCTAAGT+AGG | - | chr6.1:1396965-1396984 | None:intergenic | 35.0% | |
AGGTGCAAAGAATTCTTCAA+AGG | + | chr6.1:1396638-1396657 | MS.gene82866:CDS | 35.0% | |
ATCTGTGGAATTCATTCCAA+AGG | + | chr6.1:1396450-1396469 | MS.gene82866:CDS | 35.0% | |
ATCTTCCTAGATTTCTCCTT+TGG | - | chr6.1:1396469-1396488 | None:intergenic | 35.0% | |
CTTGGATTTGAGTCTAAGTA+GGG | - | chr6.1:1396964-1396983 | None:intergenic | 35.0% | |
GTATTTCCGTTGTAATAGTG+TGG | - | chr6.1:1397330-1397349 | None:intergenic | 35.0% | |
TAAGTAGATGTTCATGGGAT+AGG | - | chr6.1:1397413-1397432 | None:intergenic | 35.0% | |
TCATTCCAAAGGAGAAATCT+AGG | + | chr6.1:1396461-1396480 | MS.gene82866:CDS | 35.0% | |
TTAGCACCACACTATTACAA+CGG | + | chr6.1:1397321-1397340 | MS.gene82866:CDS | 35.0% | |
!! | AGATTTTGAAAAGGAAGAGC+AGG | - | chr6.1:1397384-1397403 | None:intergenic | 35.0% |
!!! | CATACCGATTTTGAGATCAT+TGG | - | chr6.1:1397268-1397287 | None:intergenic | 35.0% |
AAACTTCTCTTTGCGCACTT+TGG | - | chr6.1:1396755-1396774 | None:intergenic | 40.0% | |
AAGCTCTCAACCTTCTTCTA+TGG | + | chr6.1:1397128-1397147 | MS.gene82866:CDS | 40.0% | |
ATAAGTGGCCAAAACCCTAA+AGG | - | chr6.1:1397063-1397082 | None:intergenic | 40.0% | |
ATGCTAGAAGGAGATCTTCT+GGG | + | chr6.1:1396889-1396908 | MS.gene82866:CDS | 40.0% | |
CTCTTGGAGATGAACAATTG+AGG | + | chr6.1:1396812-1396831 | MS.gene82866:CDS | 40.0% | |
CTTCTACCATGTAGAGTCTA+AGG | + | chr6.1:1397167-1397186 | MS.gene82866:CDS | 40.0% | |
CTTTATGCTCCCAACTTTGA+AGG | + | chr6.1:1396571-1396590 | MS.gene82866:CDS | 40.0% | |
GCAGTTGAAACCATATGAGA+GGG | - | chr6.1:1397105-1397124 | None:intergenic | 40.0% | |
GCCACCAATGATCTCAAAAT+CGG | + | chr6.1:1397261-1397280 | MS.gene82866:CDS | 40.0% | |
GGCATTAGCATCAACATGAT+GGG | - | chr6.1:1397244-1397263 | None:intergenic | 40.0% | |
TAAGTGGCCAAAACCCTAAA+GGG | - | chr6.1:1397062-1397081 | None:intergenic | 40.0% | |
TATGCTAGAAGGAGATCTTC+TGG | + | chr6.1:1396888-1396907 | MS.gene82866:CDS | 40.0% | |
TGCAGTTGAAACCATATGAG+AGG | - | chr6.1:1397106-1397125 | None:intergenic | 40.0% | |
TGGCATTAGCATCAACATGA+TGG | - | chr6.1:1397245-1397264 | None:intergenic | 40.0% | |
! | GAGGTTATTTGCTAGGATCT+TGG | + | chr6.1:1396831-1396850 | MS.gene82866:CDS | 40.0% |
! | TGCACCTCTTTTGTGTCTTT+CGG | - | chr6.1:1396625-1396644 | None:intergenic | 40.0% |
!! | AGCATCGACATCACAAAGAA+TGG | - | chr6.1:1396542-1396561 | None:intergenic | 40.0% |
!! | AGGGTTTTGGCCACTTATAT+CGG | + | chr6.1:1397065-1397084 | MS.gene82866:CDS | 40.0% |
!!! | ACCGATTTTGAGATCATTGG+TGG | - | chr6.1:1397265-1397284 | None:intergenic | 40.0% |
!!! | TGTTGTTTTGCACGAGATTG+AGG | - | chr6.1:1396990-1397009 | None:intergenic | 40.0% |
AAGCTCTCAACCCTCTCATA+TGG | + | chr6.1:1397092-1397111 | MS.gene82866:CDS | 45.0% | |
ATGGCCGAAAGACACAAAAG+AGG | + | chr6.1:1396618-1396637 | MS.gene82866:CDS | 45.0% | |
TACCTGCCTTAGACTCTACA+TGG | - | chr6.1:1397176-1397195 | None:intergenic | 45.0% | |
! | ATACCCTTGGCCTTCAAAGT+TGG | - | chr6.1:1396584-1396603 | None:intergenic | 45.0% |
! | GAGCTTTGACCCGATATAAG+TGG | - | chr6.1:1397078-1397097 | None:intergenic | 45.0% |
! | TACCATGTAGAGTCTAAGGC+AGG | + | chr6.1:1397171-1397190 | MS.gene82866:CDS | 45.0% |
! | TACCCTTGGCCTTCAAAGTT+GGG | - | chr6.1:1396583-1396602 | None:intergenic | 45.0% |
!! | GGGTTTTGGCCACTTATATC+GGG | + | chr6.1:1397066-1397085 | MS.gene82866:CDS | 45.0% |
!! | TTTCGGCCATGTTTCAGGTT+CGG | - | chr6.1:1396608-1396627 | None:intergenic | 45.0% |
AGGAAGAGCAGGCATAGCAA+TGG | - | chr6.1:1397373-1397392 | None:intergenic | 50.0% | |
ATGGTAGAAGCTCTGTGCTC+GGG | - | chr6.1:1397157-1397176 | None:intergenic | 50.0% | |
CATGGTAGAAGCTCTGTGCT+CGG | - | chr6.1:1397158-1397177 | None:intergenic | 50.0% | |
GCTCGGGAAACCATAGAAGA+AGG | - | chr6.1:1397141-1397160 | None:intergenic | 50.0% | |
GGAAGAGCAGGCATAGCAAT+GGG | - | chr6.1:1397372-1397391 | None:intergenic | 50.0% | |
GGTATGCCGAACCTGAAACA+TGG | + | chr6.1:1396599-1396618 | MS.gene82866:CDS | 50.0% | |
GTGTCTTTCGGCCATGTTTC+AGG | - | chr6.1:1396613-1396632 | None:intergenic | 50.0% | |
TGCACGAGATTGAGGCTACT+TGG | - | chr6.1:1396982-1397001 | None:intergenic | 50.0% | |
! | CTCCCAACTTTGAAGGCCAA+GGG | + | chr6.1:1396578-1396597 | MS.gene82866:CDS | 50.0% |
!! | TTTCAGGTTCGGCATACCCT+TGG | - | chr6.1:1396597-1396616 | None:intergenic | 50.0% |
! | GCTCCCAACTTTGAAGGCCA+AGG | + | chr6.1:1396577-1396596 | MS.gene82866:CDS | 55.0% |
!! | GGGTCGTGGAAGAGTATCTG+TGG | + | chr6.1:1396435-1396454 | MS.gene82866:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 1396433 | 1397497 | 1396433 | ID=MS.gene82866 |
chr6.1 | mRNA | 1396433 | 1397497 | 1396433 | ID=MS.gene82866.t1;Parent=MS.gene82866 |
chr6.1 | exon | 1396433 | 1397497 | 1396433 | ID=MS.gene82866.t1.exon1;Parent=MS.gene82866.t1 |
chr6.1 | CDS | 1396433 | 1397497 | 1396433 | ID=cds.MS.gene82866.t1;Parent=MS.gene82866.t1 |
Gene Sequence |
Protein sequence |