AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82926

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82926.t1 MTR_0558s0020 87.838 296 35 1 1 295 1 296 0.0 550
MS.gene82926.t1 MTR_1g083640 83.451 284 31 1 1 268 1 284 2.17e-176 498
MS.gene82926.t1 MTR_8g446020 73.898 295 38 1 1 295 1 256 1.07e-155 444
MS.gene82926.t1 MTR_6g090505 83.966 237 38 0 65 301 1 237 1.27e-146 425
MS.gene82926.t1 MTR_6g090505 67.647 102 6 2 396 495 230 306 8.73e-35 134
MS.gene82926.t1 MTR_2g014100 82.449 245 34 1 1 236 1 245 3.22e-145 417
MS.gene82926.t1 MTR_0337s0040 72.308 260 32 2 1 259 1 221 1.65e-127 371
MS.gene82926.t1 MTR_3g008240 84.729 203 30 1 1 202 1 203 2.04e-121 355
MS.gene82926.t1 MTR_4g040430 84.158 202 28 1 1 202 1 198 3.70e-121 354
MS.gene82926.t1 MTR_5g071590 73.889 180 34 2 1 167 1 180 1.54e-92 280
MS.gene82926.t1 MTR_1g055240 88.028 142 17 0 91 232 3 144 2.06e-89 271
MS.gene82926.t1 MTR_0019s0290 82.237 152 27 0 82 233 9 160 1.39e-88 269
MS.gene82926.t1 MTR_1281s0010 81.651 109 20 0 19 127 1 109 1.66e-58 189
MS.gene82926.t1 MTR_6g051425 32.075 318 185 6 40 341 22 324 1.45e-39 147
MS.gene82926.t1 MTR_0337s0060 93.939 66 4 0 447 512 21 86 1.29e-35 133
MS.gene82926.t1 MTR_4g008820 83.750 80 12 1 1 79 125 204 3.57e-32 131
MS.gene82926.t1 MTR_8g046060 77.273 88 11 2 1 79 91 178 1.46e-31 121
MS.gene82926.t1 MTR_1g070355 26.852 324 216 6 41 362 80 384 1.09e-19 92.8
MS.gene82926.t1 MTR_0402s0040 25.405 185 119 4 49 233 40 205 5.72e-15 77.8
MS.gene82926.t1 MTR_0337s0050 75.000 36 9 0 259 294 14 49 1.31e-13 66.6
MS.gene82926.t1 MTR_4g035820 22.414 290 192 7 17 299 61 324 2.00e-13 73.6
MS.gene82926.t1 MTR_1g013060 29.954 217 131 8 40 253 29 227 9.23e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82926.t1 AT4G38180 28.842 475 305 7 32 499 70 518 6.67e-62 217
MS.gene82926.t1 AT3G06250 26.477 491 284 11 34 521 189 605 2.19e-42 162
MS.gene82926.t1 AT3G06250 26.477 491 284 11 34 521 189 605 2.19e-42 162
MS.gene82926.t1 AT3G06250 26.477 491 284 11 34 521 189 605 2.19e-42 162
MS.gene82926.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.24e-41 160
MS.gene82926.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.24e-41 160
MS.gene82926.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.24e-41 160
MS.gene82926.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.24e-41 160
MS.gene82926.t1 AT4G15090 25.163 461 318 8 50 507 66 502 1.24e-41 160
MS.gene82926.t1 AT1G76320 26.490 453 291 11 50 496 12 428 3.83e-41 157
MS.gene82926.t1 AT1G76320 26.490 453 291 11 50 496 12 428 6.75e-41 157
MS.gene82926.t1 AT1G76320 26.490 453 291 11 50 496 12 428 6.75e-41 157
MS.gene82926.t1 AT1G76320 26.490 453 291 11 50 496 12 428 7.34e-41 157
MS.gene82926.t1 AT2G27110 25.506 494 305 11 10 499 29 463 9.69e-39 151
MS.gene82926.t1 AT2G27110 25.506 494 305 11 10 499 29 463 9.69e-39 151
MS.gene82926.t1 AT4G38170 28.623 276 186 4 235 507 24 291 2.68e-38 147
MS.gene82926.t1 AT2G27110 29.758 289 195 3 213 499 36 318 7.59e-38 148
MS.gene82926.t1 AT5G18960 25.249 503 298 13 24 521 200 629 1.32e-37 148
MS.gene82926.t1 AT5G18960 25.249 503 298 13 24 521 200 629 1.32e-37 148
MS.gene82926.t1 AT1G10240 26.292 445 290 13 49 482 62 479 7.42e-37 145
MS.gene82926.t1 AT1G10240 26.292 445 290 13 49 482 62 479 7.42e-37 145
MS.gene82926.t1 AT5G28530 26.304 441 281 12 40 462 60 474 1.52e-36 144
MS.gene82926.t1 AT5G28530 26.304 441 281 12 40 462 60 474 1.52e-36 144
MS.gene82926.t1 AT5G28530 26.304 441 281 12 40 462 60 474 1.59e-36 144
MS.gene82926.t1 AT3G22170 22.338 479 331 9 34 507 69 511 8.79e-35 139
MS.gene82926.t1 AT3G22170 22.338 479 331 9 34 507 69 511 8.79e-35 139
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 2.21e-32 132
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 2.21e-32 132
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 2.22e-32 132
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 3.18e-32 132
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 3.18e-32 132
MS.gene82926.t1 AT2G32250 24.346 497 299 12 4 495 10 434 3.18e-32 132
MS.gene82926.t1 AT1G80010 25.373 469 299 15 41 493 101 534 7.24e-32 130
MS.gene82926.t1 AT2G32250 24.390 451 267 10 50 495 12 393 1.88e-31 129
MS.gene82926.t1 AT2G32250 24.390 451 267 10 50 495 12 393 1.98e-31 129
MS.gene82926.t1 AT1G52520 23.371 445 304 9 41 484 91 499 1.37e-28 120
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 163 426 4.66e-28 119
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 106 369 4.71e-28 119
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 177 440 4.99e-28 119
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 163 426 5.35e-28 119
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 163 426 5.35e-28 119
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 163 426 7.45e-28 118
MS.gene82926.t1 AT4G19990 28.731 268 184 4 219 483 163 426 7.45e-28 118
MS.gene82926.t1 AT5G28530 22.970 431 245 15 40 462 60 411 5.71e-17 84.7
MS.gene82926.t1 AT5G28530 22.970 431 245 15 40 462 60 411 6.04e-17 84.3

Find 71 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCTGAGTTGGACTTTA+AGG 0.133287 6.1:-2732790 MS.gene82926:CDS
TTTCGATGAGTTAACTAATT+TGG 0.156761 6.1:-2733099 MS.gene82926:CDS
CTTTAGTCATTTCAACATTA+TGG 0.194287 6.1:-2732832 MS.gene82926:CDS
CAACAAGATTATGCTCTATT+TGG 0.198611 6.1:-2733883 MS.gene82926:CDS
TTCATTTCAGCTGCCTTTCT+TGG 0.201003 6.1:-2733380 MS.gene82926:intron
CATCGTAAGAGTGTGTTATT+TGG 0.276792 6.1:-2733347 MS.gene82926:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 6.1:+2733253 None:intergenic
AATCAGATTTCGACTACAAT+TGG 0.318540 6.1:-2733058 MS.gene82926:CDS
ACCAGCCTGGTCTGTGTATA+TGG 0.341000 6.1:+2733235 None:intergenic
GCCGATATTTATTGTTTGTT+CGG 0.341758 6.1:+2733833 None:intergenic
TATGCATTGGTCTTCAGTTT+GGG 0.370760 6.1:-2732958 MS.gene82926:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 6.1:-2733826 MS.gene82926:intron
ACCGAACAAACAATAAATAT+CGG 0.389395 6.1:-2733834 MS.gene82926:CDS
GTATGCATTGGTCTTCAGTT+TGG 0.392120 6.1:-2732959 MS.gene82926:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 6.1:+2734363 None:intergenic
TAAAGAATCATGGAAGTCTT+TGG 0.408500 6.1:-2734592 MS.gene82926:CDS
ATAACACTGGATTCTCTGTT+AGG 0.417808 6.1:-2734521 MS.gene82926:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 6.1:-2734186 MS.gene82926:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 6.1:-2734304 MS.gene82926:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 6.1:+2733242 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 6.1:-2734321 MS.gene82926:CDS
CGTTATGTTTGTAACAAAGA+AGG 0.449439 6.1:-2734438 MS.gene82926:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 6.1:-2734156 MS.gene82926:CDS
ATCTGAGAGTGGACAATTGA+CGG 0.452529 6.1:-2734667 MS.gene82926:CDS
TGGTCTTTGCTCATGGCACA+TGG 0.452802 6.1:-2733168 MS.gene82926:CDS
GGCCTACTTCGGACTTTAAG+TGG 0.458978 6.1:-2733004 MS.gene82926:CDS
ACAAAATAAGAAATCGGATA+AGG 0.469178 6.1:-2734472 MS.gene82926:CDS
GAAGTGATGGGTCAAGGAGT+TGG 0.484292 6.1:-2734111 MS.gene82926:CDS
TTACAACCAACCCTTTCCTC+TGG 0.485330 6.1:+2734327 None:intergenic
TTTAATTATGCATATAACAC+TGG 0.485542 6.1:-2734534 MS.gene82926:CDS
TCTAATGACAACTCGTCAAA+AGG 0.488137 6.1:-2734043 MS.gene82926:CDS
CTCAAGTAGCACAAATGCTC+TGG 0.489977 6.1:+2734216 None:intergenic
CAATTCACAAAATAAGAAAT+CGG 0.490263 6.1:-2734478 MS.gene82926:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 6.1:+2733367 None:intergenic
ATCAGATTTCGACTACAATT+GGG 0.491708 6.1:-2733057 MS.gene82926:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 6.1:-2734030 MS.gene82926:CDS
ACATTATGGTTCAGAGAATG+AGG 0.494022 6.1:-2732818 MS.gene82926:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 6.1:+2732738 None:intergenic
GAGAACATCTTATGAAGTGA+TGG 0.499875 6.1:-2734124 MS.gene82926:CDS
TGTCTTCTGCAGCATCAACT+TGG 0.502977 6.1:+2733938 None:intergenic
AAATGCTCTGGTTTATGTAA+TGG 0.504865 6.1:+2734228 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.507227 6.1:-2732971 MS.gene82926:CDS
TTTAAGTCCGAAAATCGAAA+AGG 0.508080 6.1:+2734072 None:intergenic
GAGGGATAATCATGCTGAGT+TGG 0.508852 6.1:-2732799 MS.gene82926:CDS
ATTGGTCTTCAGTTTGGGTG+AGG 0.509410 6.1:-2732953 MS.gene82926:CDS
TGTCTATAAGATATATAAGT+GGG 0.514682 6.1:-2734268 MS.gene82926:CDS
TAAAGAATCGAACAAGTGAA+TGG 0.519618 6.1:+2732850 None:intergenic
TAACAAAGAAGGTTTCAAGA+AGG 0.525236 6.1:-2734427 MS.gene82926:CDS
AATCGAACAAGTGAATGGTC+TGG 0.540971 6.1:+2732855 None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 6.1:-2734426 MS.gene82926:CDS
CATTTAGTGATAAAGAATCA+TGG 0.546005 6.1:-2734602 MS.gene82926:CDS
ACTTCAACAACGCACCAGCC+TGG 0.557139 6.1:+2733222 None:intergenic
AATGAAGCTCTCTCGAAACC+AGG 0.565261 6.1:-2733976 MS.gene82926:CDS
TGAAAATTCAGTTATTGATG+CGG 0.565546 6.1:-2734643 MS.gene82926:CDS
GTGATGGGTCAAGGAGTTGG+AGG 0.568802 6.1:-2734108 MS.gene82926:CDS
ATGTCTATAAGATATATAAG+TGG 0.572287 6.1:-2734269 MS.gene82926:CDS
GGACCGCATAAGCTGACTGT+TGG 0.579264 6.1:+2732737 None:intergenic
ATATTAACTTCATCTGAGAG+TGG 0.588105 6.1:-2734678 MS.gene82926:CDS
TCTTATGAAGTGATGGGTCA+AGG 0.589029 6.1:-2734117 MS.gene82926:CDS
ACCATATACACAGACCAGGC+TGG 0.590176 6.1:-2733236 MS.gene82926:CDS
GACAACTCGTCAAAAGGAGA+TGG 0.599038 6.1:-2734037 MS.gene82926:CDS
AGAACATCTTATGAAGTGAT+GGG 0.601988 6.1:-2734123 MS.gene82926:CDS
AACTCGTCAAAAGGAGATGG+TGG 0.603142 6.1:-2734034 MS.gene82926:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 6.1:-2732740 MS.gene82926:intron
AGAACTGGACTGTCACATGT+TGG 0.620791 6.1:+2734378 None:intergenic
AGCCACTTAAAGTCCGAAGT+AGG 0.621799 6.1:+2733002 None:intergenic
GGGTCAAGGAGTTGGAGGCA+CGG 0.621882 6.1:-2734103 MS.gene82926:CDS
GGTCTTTGCTCATGGCACAT+GGG 0.639768 6.1:-2733167 MS.gene82926:CDS
CATTATGGTTCAGAGAATGA+GGG 0.643278 6.1:-2732817 MS.gene82926:CDS
GATTTCAGCTTATCGACAGA+CGG 0.644926 6.1:+2732267 None:intergenic
TCAAACCATATACACAGACC+AGG 0.671057 6.1:-2733240 MS.gene82926:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTCTATAAGATATATAAG+TGG - chr6.1:2732689-2732708 MS.gene82926:intron 20.0%
!! CAATTCACAAAATAAGAAAT+CGG - chr6.1:2732480-2732499 MS.gene82926:intron 20.0%
!! TGTCTATAAGATATATAAGT+GGG - chr6.1:2732690-2732709 MS.gene82926:intron 20.0%
!! TTTAATTATGCATATAACAC+TGG - chr6.1:2732424-2732443 MS.gene82926:intron 20.0%
!!! AATTTAATGTTCTGGTTTAT+GGG - chr6.1:2733307-2733326 MS.gene82926:CDS 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG - chr6.1:2733929-2733948 MS.gene82926:CDS 20.0%
!!! TGAATGTTTATATTGATTGA+AGG - chr6.1:2733279-2733298 MS.gene82926:CDS 20.0%
! AAAACACCTTGAAAAACATT+CGG + chr6.1:2733767-2733786 None:intergenic 25.0%
! ACAAAATAAGAAATCGGATA+AGG - chr6.1:2732486-2732505 MS.gene82926:intron 25.0%
! ACCGAACAAACAATAAATAT+CGG - chr6.1:2733124-2733143 MS.gene82926:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG + chr6.1:2733150-2733169 None:intergenic 25.0%
! CATAATAGTATTTGAAGGAA+AGG + chr6.1:2734300-2734319 None:intergenic 25.0%
! CATTTAGTGATAAAGAATCA+TGG - chr6.1:2732356-2732375 MS.gene82926:intron 25.0%
! CTTTAGTCATTTCAACATTA+TGG - chr6.1:2734126-2734145 MS.gene82926:CDS 25.0%
! TGAAAATTCAGTTATTGATG+CGG - chr6.1:2732315-2732334 MS.gene82926:intron 25.0%
! TGAAATTTGAATGAATGTTC+TGG - chr6.1:2733197-2733216 MS.gene82926:CDS 25.0%
! TGAATAAATGAAAAGCAAGA+TGG + chr6.1:2734265-2734284 None:intergenic 25.0%
! TTCCTTCAAATACTATTATG+AGG - chr6.1:2734300-2734319 MS.gene82926:CDS 25.0%
! TTTCGATGAGTTAACTAATT+TGG - chr6.1:2733859-2733878 MS.gene82926:CDS 25.0%
!! AGGTTTAGAATTTAATGTTC+TGG - chr6.1:2733299-2733318 MS.gene82926:CDS 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG - chr6.1:2733555-2733574 MS.gene82926:intron 25.0%
!!! ATGTTGATAATGATAATGAG+AGG - chr6.1:2734401-2734420 MS.gene82926:CDS 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG + chr6.1:2732476-2732495 None:intergenic 25.0%
!!! GAATTTAATGTTCTGGTTTA+TGG - chr6.1:2733306-2733325 MS.gene82926:CDS 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG - chr6.1:2732802-2732821 MS.gene82926:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG - chr6.1:2733933-2733952 MS.gene82926:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG - chr6.1:2734402-2734421 MS.gene82926:CDS 25.0%
AAACACATATGATCTTTCCA+TGG + chr6.1:2733370-2733389 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG - chr6.1:2732532-2732551 MS.gene82926:intron 30.0%
AACAATAAATATCGGCCATT+AGG - chr6.1:2733132-2733151 MS.gene82926:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG - chr6.1:2733900-2733919 MS.gene82926:CDS 30.0%
AGAACATCTTATGAAGTGAT+GGG - chr6.1:2732835-2732854 MS.gene82926:CDS 30.0%
ATATTAACTTCATCTGAGAG+TGG - chr6.1:2732280-2732299 MS.gene82926:CDS 30.0%
ATCAGATTTCGACTACAATT+GGG - chr6.1:2733901-2733920 MS.gene82926:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG + chr6.1:2733594-2733613 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG + chr6.1:2734473-2734492 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+TGG - chr6.1:2733075-2733094 MS.gene82926:CDS 30.0%
CGTTATGTTTGTAACAAAGA+AGG - chr6.1:2732520-2732539 MS.gene82926:intron 30.0%
CTCCTCATAATAGTATTTGA+AGG + chr6.1:2734305-2734324 None:intergenic 30.0%
CTGGTATATGTGTGTTAATT+TGG - chr6.1:2733236-2733255 MS.gene82926:CDS 30.0%
CTTCAAATACTATTATGAGG+AGG - chr6.1:2734303-2734322 MS.gene82926:CDS 30.0%
GAGAATGCAAAGAAAAATCT+CGG - chr6.1:2733815-2733834 MS.gene82926:intron 30.0%
GATTATGATCTTCAAACCTT+GGG + chr6.1:2734474-2734493 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG + chr6.1:2733128-2733147 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG - chr6.1:2732621-2732640 MS.gene82926:intron 30.0%
TAAAGAATCATGGAAGTCTT+TGG - chr6.1:2732366-2732385 MS.gene82926:intron 30.0%
TAAAGAATCGAACAAGTGAA+TGG + chr6.1:2734111-2734130 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG - chr6.1:2732531-2732550 MS.gene82926:intron 30.0%
TGGATATCATAGTAAAAACC+TGG + chr6.1:2733003-2733022 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG + chr6.1:2734245-2734264 None:intergenic 30.0%
TTTAAGTCCGAAAATCGAAA+AGG + chr6.1:2732889-2732908 None:intergenic 30.0%
TTTCTATTTACACAGCACAA+TGG - chr6.1:2733514-2733533 MS.gene82926:intron 30.0%
! AAATGCTCTGGTTTATGTAA+TGG + chr6.1:2732733-2732752 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG - chr6.1:2732654-2732673 MS.gene82926:intron 30.0%
! CAAAGTTTTCACAATTGAGA+AGG - chr6.1:2734360-2734379 MS.gene82926:CDS 30.0%
! GAATCTTCCTTTTCGATTTT+CGG - chr6.1:2732879-2732898 MS.gene82926:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG + chr6.1:2733708-2733727 None:intergenic 30.0%
! TCAATTCCGAATGTTTTTCA+AGG - chr6.1:2733758-2733777 MS.gene82926:intron 30.0%
!! ACATGTTTTCAAGATTTTGG+AGG - chr6.1:2734585-2734604 MS.gene82926:CDS 30.0%
!! ATCATAATCGACTTGATGAA+AGG - chr6.1:2734485-2734504 MS.gene82926:CDS 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG - chr6.1:2733211-2733230 MS.gene82926:CDS 30.0%
!! TCATAATCGACTTGATGAAA+GGG - chr6.1:2734486-2734505 MS.gene82926:CDS 30.0%
!! TCGACATGTTTTCAAGATTT+TGG - chr6.1:2734582-2734601 MS.gene82926:CDS 30.0%
!!! AAGACATAGCCAGTATTTTT+TGG - chr6.1:2733037-2733056 MS.gene82926:CDS 30.0%
!!! AGACATAGCCAGTATTTTTT+GGG - chr6.1:2733038-2733057 MS.gene82926:CDS 30.0%
!!! CTGCACAATATGTTTTAAAG+CGG - chr6.1:2734650-2734669 MS.gene82926:CDS 30.0%
!!! GTTTTTCAAGGTGTTTTTCA+TGG - chr6.1:2733770-2733789 MS.gene82926:intron 30.0%
ACATTATGGTTCAGAGAATG+AGG - chr6.1:2734140-2734159 MS.gene82926:CDS 35.0%
ATAACACTGGATTCTCTGTT+AGG - chr6.1:2732437-2732456 MS.gene82926:intron 35.0%
CATAAATTCCAAGGCAAGAT+AGG + chr6.1:2733337-2733356 None:intergenic 35.0%
CATTATGGTTCAGAGAATGA+GGG - chr6.1:2734141-2734160 MS.gene82926:CDS 35.0%
CGAGAAGTAAATGAAGTTCA+AGG - chr6.1:2732772-2732791 MS.gene82926:CDS 35.0%
CGATTATGATCTTCAAACCT+TGG + chr6.1:2734475-2734494 None:intergenic 35.0%
CTAAAGAAAAACCAGAGGAA+AGG - chr6.1:2732620-2732639 MS.gene82926:intron 35.0%
CTCATTCAAATCGTATGCAT+TGG - chr6.1:2733987-2734006 MS.gene82926:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG - chr6.1:2732615-2732634 MS.gene82926:intron 35.0%
GAGAACATCTTATGAAGTGA+TGG - chr6.1:2732834-2732853 MS.gene82926:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG - chr6.1:2732557-2732576 MS.gene82926:intron 35.0%
TCTAATGACAACTCGTCAAA+AGG - chr6.1:2732915-2732934 MS.gene82926:CDS 35.0%
TGTACAGAGCATAAATTCCA+AGG + chr6.1:2733346-2733365 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG + chr6.1:2732598-2732617 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG - chr6.1:2733611-2733630 MS.gene82926:intron 35.0%
! GGTTTCGAATGTTGATGTTT+TGG - chr6.1:2734423-2734442 MS.gene82926:CDS 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG - chr6.1:2734070-2734089 MS.gene82926:CDS 35.0%
! TGGTTTAGAATTGAAGGTTC+TGG - chr6.1:2733217-2733236 MS.gene82926:CDS 35.0%
! TTTTAATGGAAGGCCTACTT+CGG - chr6.1:2733943-2733962 MS.gene82926:CDS 35.0%
! TTTTTCATGGTCTTTGCTCA+TGG - chr6.1:2733783-2733802 MS.gene82926:intron 35.0%
!! CGCTTTAAAACATATTGTGC+AGG + chr6.1:2734652-2734671 None:intergenic 35.0%
!! TATGCATTGGTCTTCAGTTT+GGG - chr6.1:2734000-2734019 MS.gene82926:CDS 35.0%
!! TTCAAGATTTTGGAGGTCTT+AGG - chr6.1:2734592-2734611 MS.gene82926:CDS 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG - chr6.1:2733654-2733673 MS.gene82926:intron 35.0%
!!! CACAATATGTTTTAAAGCGG+TGG - chr6.1:2734653-2734672 MS.gene82926:CDS 35.0%
AATCGAACAAGTGAATGGTC+TGG + chr6.1:2734106-2734125 None:intergenic 40.0%
ACCTATGATCTTTGCATAGC+TGG + chr6.1:2733464-2733483 None:intergenic 40.0%
ATCTGAGAGTGGACAATTGA+CGG - chr6.1:2732291-2732310 MS.gene82926:CDS 40.0%
ATGAGGAGGACACAACAAAA+GGG - chr6.1:2734317-2734336 MS.gene82926:CDS 40.0%
ATGTCGTATGTTTGAGAACC+GGG - chr6.1:2734549-2734568 MS.gene82926:CDS 40.0%
ATTTATGCTCTGTACAGCCA+TGG - chr6.1:2733350-2733369 MS.gene82926:CDS 40.0%
CATGTCGTATGTTTGAGAAC+CGG - chr6.1:2734548-2734567 MS.gene82926:CDS 40.0%
TATGAGGAGGACACAACAAA+AGG - chr6.1:2734316-2734335 MS.gene82926:CDS 40.0%
TCAAACCATATACACAGACC+AGG - chr6.1:2733718-2733737 MS.gene82926:intron 40.0%
TCCAGCTATGCAAAGATCAT+AGG - chr6.1:2733460-2733479 MS.gene82926:intron 40.0%
TCCATCTGCCCAAAAAATAC+TGG + chr6.1:2733049-2733068 None:intergenic 40.0%
TGGTCTGTGTATATGGTTTG+AGG + chr6.1:2733719-2733738 None:intergenic 40.0%
TTCATTTCAGCTGCCTTTCT+TGG - chr6.1:2733578-2733597 MS.gene82926:intron 40.0%
TTGAAGAAAACCTTTCCCCA+AGG - chr6.1:2734455-2734474 MS.gene82926:CDS 40.0%
! TCATGCTGAGTTGGACTTTA+AGG - chr6.1:2734168-2734187 MS.gene82926:CDS 40.0%
!! AAGATTTTGGAGGTCTTAGG+TGG - chr6.1:2734595-2734614 MS.gene82926:CDS 40.0%
!! GTATGCATTGGTCTTCAGTT+TGG - chr6.1:2733999-2734018 MS.gene82926:CDS 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG + chr6.1:2732571-2732590 None:intergenic 40.0%
!! TCTTATGAAGTGATGGGTCA+AGG - chr6.1:2732841-2732860 MS.gene82926:CDS 40.0%
AACTCGTCAAAAGGAGATGG+TGG - chr6.1:2732924-2732943 MS.gene82926:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG - chr6.1:2732982-2733001 MS.gene82926:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG + chr6.1:2732583-2732602 None:intergenic 45.0%
AGCCACTTAAAGTCCGAAGT+AGG + chr6.1:2733959-2733978 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG - chr6.1:2734218-2734237 MS.gene82926:CDS 45.0%
CATGTCGACATAAGAAACCC+CGG + chr6.1:2734570-2734589 None:intergenic 45.0%
CTCAAGTAGCACAAATGCTC+TGG + chr6.1:2732745-2732764 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG - chr6.1:2732625-2732644 MS.gene82926:intron 45.0%
GACAACTCGTCAAAAGGAGA+TGG - chr6.1:2732921-2732940 MS.gene82926:CDS 45.0%
GAGGGATAATCATGCTGAGT+TGG - chr6.1:2734159-2734178 MS.gene82926:CDS 45.0%
GATCTTCAAACCTTGGGGAA+AGG + chr6.1:2734468-2734487 None:intergenic 45.0%
TGTCGTATGTTTGAGAACCG+GGG - chr6.1:2734550-2734569 MS.gene82926:CDS 45.0%
TGTCTTCTGCAGCATCAACT+TGG + chr6.1:2733023-2733042 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG + chr6.1:2732634-2732653 None:intergenic 45.0%
! GTGAGGTCACATTTTACAGC+TGG - chr6.1:2734022-2734041 MS.gene82926:CDS 45.0%
!! ATTGGTCTTCAGTTTGGGTG+AGG - chr6.1:2734005-2734024 MS.gene82926:CDS 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG - chr6.1:2732637-2732656 MS.gene82926:intron 45.0%
!!! GCCAGTATTTTTTGGGCAGA+TGG - chr6.1:2733045-2733064 MS.gene82926:CDS 45.0%
ACCAGCCTGGTCTGTGTATA+TGG + chr6.1:2733726-2733745 None:intergenic 50.0%
ACCATATACACAGACCAGGC+TGG - chr6.1:2733722-2733741 MS.gene82926:intron 50.0%
AGGGTTGTCACAGTCGACAT+TGG - chr6.1:2734505-2734524 MS.gene82926:CDS 50.0%
GACCGCATAAGCTGACTGTT+GGG + chr6.1:2734223-2734242 None:intergenic 50.0%
GGCCTACTTCGGACTTTAAG+TGG - chr6.1:2733954-2733973 MS.gene82926:CDS 50.0%
GGGTTGTCACAGTCGACATT+GGG - chr6.1:2734506-2734525 MS.gene82926:CDS 50.0%
GGTCTTTGCTCATGGCACAT+GGG - chr6.1:2733791-2733810 MS.gene82926:intron 50.0%
TGGGTGATCCTATCTTGCCT+TGG - chr6.1:2733326-2733345 MS.gene82926:CDS 50.0%
TGGTCTTTGCTCATGGCACA+TGG - chr6.1:2733790-2733809 MS.gene82926:intron 50.0%
!! GAAGTGATGGGTCAAGGAGT+TGG - chr6.1:2732847-2732866 MS.gene82926:CDS 50.0%
ACTTCAACAACGCACCAGCC+TGG + chr6.1:2733739-2733758 None:intergenic 55.0%
GGACCGCATAAGCTGACTGT+TGG + chr6.1:2734224-2734243 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG - chr6.1:2732928-2732947 MS.gene82926:CDS 55.0%
!! GTGATGGGTCAAGGAGTTGG+AGG - chr6.1:2732850-2732869 MS.gene82926:CDS 55.0%
GGGTCAAGGAGTTGGAGGCA+CGG - chr6.1:2732855-2732874 MS.gene82926:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 2732271 2734709 2732271 ID=MS.gene82926
chr6.1 mRNA 2732271 2734709 2732271 ID=MS.gene82926.t1;Parent=MS.gene82926
chr6.1 exon 2733827 2734709 2733827 ID=MS.gene82926.t1.exon1;Parent=MS.gene82926.t1
chr6.1 CDS 2733827 2734709 2733827 ID=cds.MS.gene82926.t1;Parent=MS.gene82926.t1
chr6.1 exon 2732741 2733392 2732741 ID=MS.gene82926.t1.exon2;Parent=MS.gene82926.t1
chr6.1 CDS 2732741 2733392 2732741 ID=cds.MS.gene82926.t1;Parent=MS.gene82926.t1
chr6.1 exon 2732271 2732310 2732271 ID=MS.gene82926.t1.exon3;Parent=MS.gene82926.t1
chr6.1 CDS 2732271 2732310 2732271 ID=cds.MS.gene82926.t1;Parent=MS.gene82926.t1
Gene Sequence

>MS.gene82926

ATGGATTTGATATTAACTTCATCTGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCATTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATGTGCGTTATGTTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTGGAATTTATGCTCTGTACAGCCATGGAAAGATCATATGTGTTTTTTTATCGATGATAAATAGCTCTGTCTGTGTTTGCGAGTTTAGACATCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATAAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCAGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAGAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTGGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGA
Protein sequence

>MS.gene82926.t1

MDLILTSSESGQLTVENSVIDADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVRYVCNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRGGLEMCVRLSIS