Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83024.t1 | KEH40658.1 | 93.4 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 2.20E-81 | 311.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83024.t1 | A0A072VGU3 | 93.4 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 1.6e-81 | 311.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene83024.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83024.t1 | MTR_1g032880 | 93.413 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 1.11e-113 | 320 |
MS.gene83024.t1 | MTR_8g105930 | 41.327 | 196 | 69 | 2 | 16 | 165 | 46 | 241 | 4.10e-42 | 140 |
MS.gene83024.t1 | MTR_8g097310 | 31.788 | 151 | 73 | 4 | 27 | 159 | 13 | 151 | 8.02e-14 | 65.5 |
MS.gene83024.t1 | MTR_2g055210 | 41.379 | 87 | 45 | 2 | 27 | 113 | 147 | 227 | 6.01e-13 | 65.5 |
MS.gene83024.t1 | MTR_4g094680 | 38.202 | 89 | 52 | 2 | 26 | 112 | 66 | 153 | 4.23e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83024.t1 | AT2G01818 | 45.055 | 91 | 47 | 2 | 25 | 113 | 58 | 147 | 3.24e-17 | 75.9 |
MS.gene83024.t1 | AT2G01818 | 43.210 | 81 | 43 | 2 | 35 | 113 | 4 | 83 | 1.51e-12 | 62.4 |
MS.gene83024.t1 | AT3G60670 | 42.045 | 88 | 46 | 2 | 26 | 113 | 51 | 133 | 1.66e-12 | 63.5 |
MS.gene83024.t1 | AT4G17900 | 30.496 | 141 | 83 | 4 | 27 | 162 | 80 | 210 | 1.71e-11 | 60.8 |
MS.gene83024.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 47 | 130 | 2.43e-11 | 60.5 |
MS.gene83024.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 50 | 133 | 2.44e-11 | 60.5 |
MS.gene83024.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 50 | 133 | 2.44e-11 | 60.5 |
MS.gene83024.t1 | AT4G17900 | 30.714 | 140 | 82 | 4 | 27 | 161 | 66 | 195 | 2.62e-11 | 60.1 |
MS.gene83024.t1 | AT1G31040 | 35.632 | 87 | 50 | 2 | 26 | 112 | 63 | 143 | 5.01e-11 | 59.7 |
Find 21 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1.4:-17597673 | None:intergenic |
TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1.4:+17595445 | MS.gene83024:CDS |
TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1.4:-17597265 | None:intergenic |
TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1.4:-17597163 | None:intergenic |
ACCCTTTCAACAGATTCATT+TGG | 0.404698 | 1.4:-17597713 | None:intergenic |
TAGATTTCAATTGAGGAGCT+TGG | 0.458055 | 1.4:+17597632 | MS.gene83024:intron |
ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1.4:-17597164 | None:intergenic |
AAACTAGAGATAGATCTCAT+AGG | 0.499860 | 1.4:-17597767 | None:intergenic |
GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1.4:+17595432 | MS.gene83024:CDS |
ATCTCATTCTCTTCATCGAA+AGG | 0.512601 | 1.4:+17595584 | MS.gene83024:CDS |
GTATTGTTAGATTTCAATTG+AGG | 0.514212 | 1.4:+17597625 | MS.gene83024:intron |
AACCAAATGAATCTGTTGAA+AGG | 0.544922 | 1.4:+17597711 | MS.gene83024:CDS |
ACCAAATGAATCTGTTGAAA+GGG | 0.545715 | 1.4:+17597712 | MS.gene83024:CDS |
AGCAATCAAAATACTTGAGT+AGG | 0.578161 | 1.4:-17595653 | None:intergenic |
TGAATCTCAGAAAGCGTCCA+AGG | 0.581640 | 1.4:+17597735 | MS.gene83024:CDS |
ACATCTCAAAAGCAAGCTGG+TGG | 0.603751 | 1.4:+17597189 | MS.gene83024:CDS |
TCAACATCTCAAAAGCAAGC+TGG | 0.604147 | 1.4:+17597186 | MS.gene83024:CDS |
GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1.4:-17597162 | None:intergenic |
ATTCTGTTCCATCAAATGCA+AGG | 0.622156 | 1.4:+17597257 | MS.gene83024:CDS |
AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1.4:+17597664 | MS.gene83024:CDS |
GGTGGAATTTGTGAAGAATG+TGG | 0.715683 | 1.4:+17597207 | MS.gene83024:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAAAAAAAAAAAATT+TGG | - | chr1.4:17596129-17596148 | None:intergenic | 0.0% |
!! | TTAAATAAATTAAGGTTTAT+AGG | - | chr1.4:17596420-17596439 | None:intergenic | 10.0% |
!! | TTATATTGAAATTAATTATG+TGG | - | chr1.4:17596934-17596953 | None:intergenic | 10.0% |
!! | TTCACATTAAATTAAAATAT+AGG | - | chr1.4:17597568-17597587 | None:intergenic | 10.0% |
!!! | TGGTTTTTTTTTAAATTATT+AGG | - | chr1.4:17596914-17596933 | None:intergenic | 10.0% |
!!! | TTTTAGATAAATAGTTATTT+TGG | + | chr1.4:17596468-17596487 | MS.gene83024:intron | 10.0% |
!!! | TTTTTTTTTAAATTATTAGG+AGG | - | chr1.4:17596911-17596930 | None:intergenic | 10.0% |
!! | AAAATCTATATATTCATCAA+TGG | - | chr1.4:17596041-17596060 | None:intergenic | 15.0% |
!! | CGATGATATTAAATAAATTA+AGG | - | chr1.4:17596428-17596447 | None:intergenic | 15.0% |
!! | TCTATTTATATAGGAAAATT+GGG | - | chr1.4:17595816-17595835 | None:intergenic | 15.0% |
!! | TTCTATTTATATAGGAAAAT+TGG | - | chr1.4:17595817-17595836 | None:intergenic | 15.0% |
!!! | AATTGTGTAATTTTAAAAGT+AGG | + | chr1.4:17596330-17596349 | MS.gene83024:intron | 15.0% |
!!! | ACTGAATTAAATGTTATTTT+TGG | + | chr1.4:17596222-17596241 | MS.gene83024:intron | 15.0% |
!!! | GAATATATAGATTTTTTAAG+TGG | + | chr1.4:17596046-17596065 | MS.gene83024:intron | 15.0% |
!!! | GCAATATAAATAAATTTTAC+AGG | - | chr1.4:17597457-17597476 | None:intergenic | 15.0% |
!!! | TTCTTTTCTTCATAATTTTA+TGG | + | chr1.4:17596560-17596579 | MS.gene83024:intron | 15.0% |
!! | AAAATAAATCAACCATAATG+TGG | - | chr1.4:17595993-17596012 | None:intergenic | 20.0% |
!! | ATAAATTAAGGTTTATAGGT+TGG | - | chr1.4:17596416-17596435 | None:intergenic | 20.0% |
!!! | GAATTGATTTACTCAATAAA+TGG | - | chr1.4:17595936-17595955 | None:intergenic | 20.0% |
!!! | TAATTACCACTTTTTTGTTT+TGG | - | chr1.4:17597510-17597529 | None:intergenic | 20.0% |
!!! | TATTGTCTAATTCACAATTT+TGG | + | chr1.4:17596252-17596271 | MS.gene83024:intron | 20.0% |
!!! | TTTTACAAGTTTTAGCTATT+GGG | + | chr1.4:17596173-17596192 | MS.gene83024:intron | 20.0% |
!!! | TTTTCCTATATAAATAGAAC+TGG | + | chr1.4:17595818-17595837 | MS.gene83024:intron | 20.0% |
! | AAAATTTGGTACATGACTAA+TGG | - | chr1.4:17596115-17596134 | None:intergenic | 25.0% |
! | AATTGTTGAAATGAATTGTG+CGG | + | chr1.4:17596073-17596092 | MS.gene83024:intron | 25.0% |
! | ACAAAAAAGTGGTAATTAGT+AGG | + | chr1.4:17597512-17597531 | MS.gene83024:intron | 25.0% |
! | AGAAACACTTATAACATGTT+TGG | - | chr1.4:17596544-17596563 | None:intergenic | 25.0% |
! | ATCTCCAGTTCTATTTATAT+AGG | - | chr1.4:17595825-17595844 | None:intergenic | 25.0% |
! | CAAAAAAGTGGTAATTAGTA+GGG | + | chr1.4:17597513-17597532 | MS.gene83024:intron | 25.0% |
! | CCTAAAATGTGAGTTATTAT+CGG | + | chr1.4:17596492-17596511 | MS.gene83024:intron | 25.0% |
! | GAACTAAAACAAAACAATAC+GGG | - | chr1.4:17597435-17597454 | None:intergenic | 25.0% |
! | GGAACTAAAACAAAACAATA+CGG | - | chr1.4:17597436-17597455 | None:intergenic | 25.0% |
! | GTATTGTTAGATTTCAATTG+AGG | + | chr1.4:17597625-17597644 | MS.gene83024:intron | 25.0% |
! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1.4:17595957-17595976 | MS.gene83024:intron | 25.0% |
!! | AAAACCATATGTTACTTCTA+AGG | - | chr1.4:17597044-17597063 | None:intergenic | 25.0% |
!! | AAACCATATGTTACTTCTAA+GGG | - | chr1.4:17597043-17597062 | None:intergenic | 25.0% |
!! | AAATCATTGATTGACAATGT+TGG | + | chr1.4:17596385-17596404 | MS.gene83024:intron | 25.0% |
!! | TGTCATTAAACTTTTCTTTG+TGG | - | chr1.4:17595512-17595531 | None:intergenic | 25.0% |
!!! | CTTTTACAAGTTTTAGCTAT+TGG | + | chr1.4:17596172-17596191 | MS.gene83024:intron | 25.0% |
!!! | TTGTATTTTGAGCATATTGT+TGG | + | chr1.4:17596757-17596776 | MS.gene83024:intron | 25.0% |
!!! | TTTTGATTGCTCATATATTC+AGG | + | chr1.4:17595665-17595684 | MS.gene83024:CDS | 25.0% |
AAACTAGAGATAGATCTCAT+AGG | - | chr1.4:17597770-17597789 | None:intergenic | 30.0% | |
AAATGATCACCAAAATTCAG+AGG | + | chr1.4:17597664-17597683 | MS.gene83024:CDS | 30.0% | |
AACCAAATGAATCTGTTGAA+AGG | + | chr1.4:17597711-17597730 | MS.gene83024:CDS | 30.0% | |
ACCAAATGAATCTGTTGAAA+GGG | + | chr1.4:17597712-17597731 | MS.gene83024:CDS | 30.0% | |
AGCAATCAAAATACTTGAGT+AGG | - | chr1.4:17595656-17595675 | None:intergenic | 30.0% | |
CTTGAACTTCACAACTTAAT+TGG | + | chr1.4:17596788-17596807 | MS.gene83024:intron | 30.0% | |
GGATAATTTATGCCACATTA+TGG | + | chr1.4:17595978-17595997 | MS.gene83024:intron | 30.0% | |
TACCAAATGGAAAAGAAGAT+TGG | + | chr1.4:17595445-17595464 | MS.gene83024:CDS | 30.0% | |
TATCATTCATACAATCATCC+AGG | - | chr1.4:17596017-17596036 | None:intergenic | 30.0% | |
TTCAAAATGTAAGGACTACA+AGG | + | chr1.4:17597483-17597502 | MS.gene83024:intron | 30.0% | |
! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1.4:17595550-17595569 | MS.gene83024:intron | 30.0% |
! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1.4:17595560-17595579 | MS.gene83024:intron | 30.0% |
! | CCGATAATAACTCACATTTT+AGG | - | chr1.4:17596495-17596514 | None:intergenic | 30.0% |
! | GCATTTTCATTTTACAACTC+TGG | - | chr1.4:17596357-17596376 | None:intergenic | 30.0% |
! | TGCAACTGATTCAAAATGTA+AGG | + | chr1.4:17597474-17597493 | MS.gene83024:intron | 30.0% |
! | TTGATGCACTTTTGATAGAT+AGG | + | chr1.4:17595469-17595488 | MS.gene83024:CDS | 30.0% |
!! | ATAAGGGTTGATATTAGGTT+TGG | - | chr1.4:17596832-17596851 | None:intergenic | 30.0% |
!! | ATTGATCTAATTTGCTCTGA+TGG | + | chr1.4:17595910-17595929 | MS.gene83024:intron | 30.0% |
!! | CTATGCTTTTTGTCAATGAA+TGG | + | chr1.4:17597310-17597329 | MS.gene83024:intron | 30.0% |
!! | CTGAATTTTGGTGATCATTT+TGG | - | chr1.4:17597664-17597683 | None:intergenic | 30.0% |
!! | TCAACAAAAGTTGATGTAAC+TGG | + | chr1.4:17595754-17595773 | MS.gene83024:intron | 30.0% |
!! | TGACAAGAATGTGTTTTGTT+TGG | + | chr1.4:17595527-17595546 | MS.gene83024:intron | 30.0% |
!!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1.4:17595534-17595553 | MS.gene83024:intron | 30.0% |
!!! | TATGGTTGATTTATTTTGCC+TGG | + | chr1.4:17595996-17596015 | MS.gene83024:intron | 30.0% |
ACCCTTTCAACAGATTCATT+TGG | - | chr1.4:17597716-17597735 | None:intergenic | 35.0% | |
AGCGATTAAAGACACATTTG+AGG | + | chr1.4:17596612-17596631 | MS.gene83024:intron | 35.0% | |
ATATCAACCCTTATGAAGCA+CGG | + | chr1.4:17596838-17596857 | MS.gene83024:intron | 35.0% | |
ATCTCATTCTCTTCATCGAA+AGG | + | chr1.4:17595584-17595603 | MS.gene83024:CDS | 35.0% | |
ATGACTAACAAGTCGTATGT+AGG | + | chr1.4:17596641-17596660 | MS.gene83024:intron | 35.0% | |
ATTCTGTTCCATCAAATGCA+AGG | + | chr1.4:17597257-17597276 | MS.gene83024:CDS | 35.0% | |
CAACCCTTAGAAGTAACATA+TGG | + | chr1.4:17597037-17597056 | MS.gene83024:intron | 35.0% | |
CAAGGACCAAAACAAAAAAG+TGG | + | chr1.4:17597501-17597520 | MS.gene83024:intron | 35.0% | |
TAGATTTCAATTGAGGAGCT+TGG | + | chr1.4:17597632-17597651 | MS.gene83024:intron | 35.0% | |
TCTTACCAGACCAAAATAGA+GGG | - | chr1.4:17596307-17596326 | None:intergenic | 35.0% | |
TGTTGTTACCTTGCATTTGA+TGG | - | chr1.4:17597268-17597287 | None:intergenic | 35.0% | |
TTGATCTTTACATGTGTGAG+AGG | - | chr1.4:17596709-17596728 | None:intergenic | 35.0% | |
! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1.4:17595450-17595469 | None:intergenic | 35.0% |
! | CAGTTTGTATCCCTCTATTT+TGG | + | chr1.4:17596294-17596313 | MS.gene83024:intron | 35.0% |
! | CATTGATTGACAATGTTGGA+GGG | + | chr1.4:17596389-17596408 | MS.gene83024:intron | 35.0% |
! | GCACTTTTGATAGATAGGTT+TGG | + | chr1.4:17595474-17595493 | MS.gene83024:intron | 35.0% |
! | TCATTGATTGACAATGTTGG+AGG | + | chr1.4:17596388-17596407 | MS.gene83024:intron | 35.0% |
!! | GCTTCATAAGGGTTGATATT+AGG | - | chr1.4:17596837-17596856 | None:intergenic | 35.0% |
ATGTCTTTGCTACTGCTAGT+CGG | - | chr1.4:17597167-17597186 | None:intergenic | 40.0% | |
CAACAAGAACACTGACATGT+CGG | + | chr1.4:17596883-17596902 | MS.gene83024:intron | 40.0% | |
CACGTTGTAAGTACAAGGTT+AGG | - | chr1.4:17597089-17597108 | None:intergenic | 40.0% | |
CATGTCACGTTGTAAGTACA+AGG | - | chr1.4:17597094-17597113 | None:intergenic | 40.0% | |
GGTGGAATTTGTGAAGAATG+TGG | + | chr1.4:17597207-17597226 | MS.gene83024:CDS | 40.0% | |
GTCTTACCAGACCAAAATAG+AGG | - | chr1.4:17596308-17596327 | None:intergenic | 40.0% | |
GTGAAGCGTAGTTTACCAAA+TGG | + | chr1.4:17595432-17595451 | MS.gene83024:CDS | 40.0% | |
TATGAGGTACAGACACACAT+TGG | - | chr1.4:17597014-17597033 | None:intergenic | 40.0% | |
TCAACATCTCAAAAGCAAGC+TGG | + | chr1.4:17597186-17597205 | MS.gene83024:CDS | 40.0% | |
! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1.4:17597676-17597695 | None:intergenic | 40.0% |
! | CTTCTAAGGGTTGATCTATG+AGG | - | chr1.4:17597030-17597049 | None:intergenic | 40.0% |
!!! | TGTATCCCTCTATTTTGGTC+TGG | + | chr1.4:17596299-17596318 | MS.gene83024:intron | 40.0% |
ACATCTCAAAAGCAAGCTGG+TGG | + | chr1.4:17597189-17597208 | MS.gene83024:CDS | 45.0% | |
ATCTGTGTCCGTGCTTCATA+AGG | - | chr1.4:17596849-17596868 | None:intergenic | 45.0% | |
ATGAAGCACGGACACAGATA+CGG | + | chr1.4:17596850-17596869 | MS.gene83024:intron | 45.0% | |
GATTAGACGTGTCCTGATGT+CGG | - | chr1.4:17596992-17597011 | None:intergenic | 45.0% | |
TACAACACATGTCCGACATC+AGG | + | chr1.4:17596977-17596996 | MS.gene83024:intron | 45.0% | |
TCTGTGTCCGTGCTTCATAA+GGG | - | chr1.4:17596848-17596867 | None:intergenic | 45.0% | |
TGTCTTTGCTACTGCTAGTC+GGG | - | chr1.4:17597166-17597185 | None:intergenic | 45.0% | |
TTGTTTACTACTCCCTCTGC+TGG | + | chr1.4:17595713-17595732 | MS.gene83024:intron | 45.0% | |
TTTCTCTCAGAACCAGCAGA+GGG | - | chr1.4:17595728-17595747 | None:intergenic | 45.0% | |
! | GTCAGTGTTCTTGTTGTGTC+TGG | - | chr1.4:17596879-17596898 | None:intergenic | 45.0% |
!! | GCTGGTTCTGAGAGAAAGTT+AGG | + | chr1.4:17595731-17595750 | MS.gene83024:intron | 45.0% |
!! | TGAATCTCAGAAAGCGTCCA+AGG | + | chr1.4:17597735-17597754 | MS.gene83024:CDS | 45.0% |
!!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1.4:17597755-17597774 | None:intergenic | 45.0% |
!! | AAATACAATTAATAAAAAAT+AGG | - | chr1.4:17596745-17596764 | None:intergenic | 5.0% |
!! | AATACAATTAATAAAAAATA+GGG | - | chr1.4:17596744-17596763 | None:intergenic | 5.0% |
!! | AATATAATTATAATATATGT+CGG | + | chr1.4:17596947-17596966 | MS.gene83024:intron | 5.0% |
!! | ATGATAAAAAATAATTTATT+AGG | - | chr1.4:17597384-17597403 | None:intergenic | 5.0% |
CTTTCTCTCAGAACCAGCAG+AGG | - | chr1.4:17595729-17595748 | None:intergenic | 50.0% | |
GTCTTTGCTACTGCTAGTCG+GGG | - | chr1.4:17597165-17597184 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 17595429 | 17597805 | 17595429 | ID=MS.gene83024 |
chr1.4 | mRNA | 17595429 | 17597805 | 17595429 | ID=MS.gene83024.t1;Parent=MS.gene83024 |
chr1.4 | exon | 17595429 | 17595490 | 17595429 | ID=MS.gene83024.t1.exon1;Parent=MS.gene83024.t1 |
chr1.4 | CDS | 17595429 | 17595490 | 17595429 | ID=cds.MS.gene83024.t1;Parent=MS.gene83024.t1 |
chr1.4 | exon | 17595572 | 17595686 | 17595572 | ID=MS.gene83024.t1.exon2;Parent=MS.gene83024.t1 |
chr1.4 | CDS | 17595572 | 17595686 | 17595572 | ID=cds.MS.gene83024.t1;Parent=MS.gene83024.t1 |
chr1.4 | exon | 17597123 | 17597278 | 17597123 | ID=MS.gene83024.t1.exon3;Parent=MS.gene83024.t1 |
chr1.4 | CDS | 17597123 | 17597278 | 17597123 | ID=cds.MS.gene83024.t1;Parent=MS.gene83024.t1 |
chr1.4 | exon | 17597635 | 17597805 | 17597635 | ID=MS.gene83024.t1.exon4;Parent=MS.gene83024.t1 |
chr1.4 | CDS | 17597635 | 17597805 | 17597635 | ID=cds.MS.gene83024.t1;Parent=MS.gene83024.t1 |
Gene Sequence |
Protein sequence |