AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83048.t1 MTR_1g032600 90.909 286 17 3 3 284 27 307 0.0 513
MS.gene83048.t1 MTR_4g075480 56.723 238 85 5 54 284 6 232 2.67e-76 234
MS.gene83048.t1 MTR_4g075480 56.723 238 85 5 54 284 34 260 8.05e-76 234
MS.gene83048.t1 MTR_4g081370 37.500 144 85 3 9 151 35 174 3.78e-20 87.4
MS.gene83048.t1 MTR_4g108360 38.017 121 71 1 34 154 34 150 1.09e-19 86.3
MS.gene83048.t1 MTR_4g081370 39.655 116 66 2 40 151 15 130 2.79e-19 84.0
MS.gene83048.t1 MTR_2g082640 44.681 94 51 1 59 151 74 167 7.85e-19 83.6
MS.gene83048.t1 MTR_1g043430 32.701 211 101 7 17 221 57 232 2.22e-18 82.8
MS.gene83048.t1 MTR_2g089000 44.565 92 50 1 59 149 110 201 3.07e-17 79.7
MS.gene83048.t1 MTR_4g108360 41.892 74 43 0 81 154 24 97 1.85e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83048.t1 AT3G19860 51.915 235 103 5 52 284 3 229 3.27e-70 219
MS.gene83048.t1 AT3G19860 51.915 235 103 5 52 284 34 260 1.16e-69 218
MS.gene83048.t1 AT3G19860 51.915 235 103 5 52 284 56 282 3.36e-69 218
MS.gene83048.t1 AT4G36060 40.336 238 90 7 58 284 30 226 8.69e-45 153
MS.gene83048.t1 AT4G36060 40.833 240 89 8 58 285 30 228 1.66e-44 152
MS.gene83048.t1 AT4G36060 40.336 238 90 7 58 284 48 244 2.61e-44 152
MS.gene83048.t1 AT4G36060 40.833 240 89 8 58 285 48 246 4.77e-44 151
MS.gene83048.t1 AT5G54680 40.517 116 62 3 43 157 62 171 4.13e-19 84.3
MS.gene83048.t1 AT3G23210 36.196 163 86 6 41 185 113 275 4.06e-18 82.8
MS.gene83048.t1 AT3G23210 36.196 163 86 6 41 185 142 304 7.53e-18 82.4
MS.gene83048.t1 AT1G51070 42.727 110 60 2 43 151 57 164 1.64e-16 77.0
MS.gene83048.t1 AT1G51070 42.727 110 60 2 43 151 123 230 4.69e-16 77.0
MS.gene83048.t1 AT3G47640 34.653 101 66 0 53 153 26 126 7.26e-16 75.9
MS.gene83048.t1 AT3G47640 34.653 101 66 0 53 153 26 126 7.26e-16 75.9
MS.gene83048.t1 AT3G47640 34.653 101 66 0 53 153 26 126 7.26e-16 75.9
MS.gene83048.t1 AT4G14410 33.103 145 74 3 59 202 129 251 1.64e-13 69.7
MS.gene83048.t1 AT4G14410 33.103 145 74 3 59 202 129 251 1.64e-13 69.7
MS.gene83048.t1 AT4G14410 33.103 145 74 3 59 202 135 257 2.19e-13 69.3

Find 77 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATATGACCAGGATTT+TGG 0.212723 1.4:-17174240 None:intergenic
ATAGGAACGGGGTATGTATA+AGG 0.280119 1.4:-17174145 None:intergenic
GTGTTTAGCGGCGGAGGCGG+TGG 0.314738 1.4:-17172788 None:intergenic
TCAAGCTCTGTTGCCACATC+TGG 0.328370 1.4:-17174430 None:intergenic
TTGTCATTCCGTGGTCTATC+AGG 0.332142 1.4:-17173797 None:intergenic
AGGCAGACCGTGAGAAAATC+AGG 0.344532 1.4:+17173025 MS.gene83048:CDS
TGAGTTGATGGCATCTCTAT+TGG 0.354531 1.4:-17174307 None:intergenic
CTCAATGTATATTCCATTCT+CGG 0.354937 1.4:+17174270 MS.gene83048:CDS
CATCAATTGGGAATCGTCAT+AGG 0.376740 1.4:+17173072 MS.gene83048:CDS
ATCTCTATTGGAGGGATAGC+TGG 0.399284 1.4:-17174295 None:intergenic
TTGGATTGTCTCTGTGATGA+TGG 0.399425 1.4:-17173825 None:intergenic
ATTGGCATTGGCATAGGAAC+GGG 0.403675 1.4:-17174157 None:intergenic
TTGCATAGGTGGTGGGTGAA+TGG 0.420730 1.4:-17174197 None:intergenic
TGTTTAGCGGCGGAGGCGGT+GGG 0.428409 1.4:-17172787 None:intergenic
GCCTGGATCATCCACGCAAC+AGG 0.430260 1.4:+17174462 MS.gene83048:CDS
GTAGAAGGATACTGAGTTGA+TGG 0.439334 1.4:-17174319 None:intergenic
TTCGAGGTGTTTAGCGGCGG+AGG 0.460101 1.4:-17172794 None:intergenic
TGGTTTCCAAAGTAAGGAAA+AGG 0.467804 1.4:-17174220 None:intergenic
GGGTGAATGGAAACCGGACC+AGG 0.474052 1.4:-17174184 None:intergenic
AATGCCAATCCCTCCTGGTC+CGG 0.475088 1.4:+17174171 MS.gene83048:CDS
GGAAAAGGTTGCATAGGTGG+TGG 0.479444 1.4:-17174205 None:intergenic
GTGATTCTTCTGCCGCAGTA+AGG 0.481448 1.4:-17172826 None:intergenic
GAAACCGGACCAGGAGGGAT+TGG 0.482079 1.4:-17174175 None:intergenic
GAGGTGTTTAGCGGCGGAGG+CGG 0.484202 1.4:-17172791 None:intergenic
TTCGCATGACTCTTCAGAAA+GGG 0.487809 1.4:-17173900 None:intergenic
CTAAACACGTGGGAAGTAGA+AGG 0.488709 1.4:-17174334 None:intergenic
GAGCTTGAACTTAAGATGCC+TGG 0.490701 1.4:+17174445 MS.gene83048:CDS
ACCTGTTGCGTGGATGATCC+AGG 0.492070 1.4:-17174463 None:intergenic
TACTTTGGAAACCAAAATCC+TGG 0.492171 1.4:+17174229 MS.gene83048:CDS
ATGCCAATGCCAATCCCTCC+TGG 0.495420 1.4:+17174166 MS.gene83048:CDS
CCGGACTGTATCTTTACGAT+TGG 0.495476 1.4:-17172864 None:intergenic
GGGATAGCTGGAGCCGAGAA+TGG 0.495557 1.4:-17174283 None:intergenic
ATGTTATGTCCTTTAGCACT+TGG 0.496696 1.4:-17173844 None:intergenic
TTACGATTGGTGATGGGCAG+CGG 0.497262 1.4:-17172851 None:intergenic
TAGGAACGGGGTATGTATAA+GGG 0.499215 1.4:-17174144 None:intergenic
TGTATCTTTACGATTGGTGA+TGG 0.507613 1.4:-17172858 None:intergenic
AGAGTCTCGAAGCAAGTCAC+CGG 0.507955 1.4:+17174363 MS.gene83048:CDS
GTGTAGAGAAAGGAGTGAGA+TGG 0.522999 1.4:+17172972 MS.gene83048:intron
GGTGGTGGGTGAATGGAAAC+CGG 0.527150 1.4:-17174190 None:intergenic
GTTGATGGCATCTCTATTGG+AGG 0.534549 1.4:-17174304 None:intergenic
AGAGACAATCCAAGTGCTAA+AGG 0.542357 1.4:+17173835 MS.gene83048:CDS
GAATGGTCAATTGCAGTCCA+TGG 0.542691 1.4:-17174106 None:intergenic
CTACATCTTTCTGCATCACT+AGG 0.545949 1.4:-17174400 None:intergenic
GGAGGGATTGGCATTGGCAT+AGG 0.546018 1.4:-17174163 None:intergenic
CTTCGCATGACTCTTCAGAA+AGG 0.552239 1.4:-17173901 None:intergenic
GACTCAGAGTCATGCCGCCA+TGG 0.559055 1.4:+17174089 MS.gene83048:CDS
TAAGGAAAAGGTTGCATAGG+TGG 0.560851 1.4:-17174208 None:intergenic
GGACCAGGAGGGATTGGCAT+TGG 0.561637 1.4:-17174169 None:intergenic
AACAACACATGATCAATCAA+TGG 0.565806 1.4:+17172762 MS.gene83048:CDS
GTATCTTTACGATTGGTGAT+GGG 0.565902 1.4:-17172857 None:intergenic
TGATTCTTCTGCCGCAGTAA+GGG 0.566675 1.4:-17172825 None:intergenic
GATTGGCATTGGCATAGGAA+CGG 0.568920 1.4:-17174158 None:intergenic
GAAAAGGTTGCATAGGTGGT+GGG 0.571733 1.4:-17174204 None:intergenic
AAGTAAGGAAAAGGTTGCAT+AGG 0.574577 1.4:-17174211 None:intergenic
ATATACATTGAGGATAGACT+TGG 0.594802 1.4:-17174259 None:intergenic
CTAGGTCGTCTTCTATGACC+CGG 0.595312 1.4:-17174382 None:intergenic
TCTTCTGCCGCAGTAAGGGA+TGG 0.602962 1.4:-17172821 None:intergenic
CGAGAATGGAATATACATTG+AGG 0.609687 1.4:-17174269 None:intergenic
TATATAATATACCTGTTGCG+TGG 0.610882 1.4:-17174473 None:intergenic
GATAGACTTGGAATATGACC+AGG 0.610908 1.4:-17174247 None:intergenic
CGATTGGTGATGGGCAGCGG+AGG 0.614010 1.4:-17172848 None:intergenic
CCAATCGTAAAGATACAGTC+CGG 0.616253 1.4:+17172864 MS.gene83048:CDS
GAGTCTCGAAGCAAGTCACC+GGG 0.616600 1.4:+17174364 MS.gene83048:CDS
ATGGTTGCCTTGTCATTCCG+TGG 0.623588 1.4:-17173806 None:intergenic
TGAATGGAAACCGGACCAGG+AGG 0.624977 1.4:-17174181 None:intergenic
TGTTGCTAGAAAAGTTCAGA+AGG 0.633118 1.4:+17173005 MS.gene83048:CDS
GGCTACTCATGACAACAGAA+TGG 0.634259 1.4:-17174123 None:intergenic
GAATGGAAACCGGACCAGGA+GGG 0.634490 1.4:-17174180 None:intergenic
TTGATGGCATCTCTATTGGA+GGG 0.642814 1.4:-17174303 None:intergenic
TGATAGACCACGGAATGACA+AGG 0.652628 1.4:+17173799 MS.gene83048:CDS
TTGGCATTGGCATAGGAACG+GGG 0.653981 1.4:-17174156 None:intergenic
ATGTAGTGTGTCTCCAGATG+TGG 0.671060 1.4:+17174417 MS.gene83048:CDS
ATGCAGATCCTGATAGACCA+CGG 0.688242 1.4:+17173789 MS.gene83048:intron
AGACCGTGAGAAAATCAGGA+GGG 0.711741 1.4:+17173029 MS.gene83048:CDS
CAGACCGTGAGAAAATCAGG+AGG 0.717963 1.4:+17173028 MS.gene83048:CDS
TGGTCAATTGCAGTCCATGG+CGG 0.722199 1.4:-17174103 None:intergenic
GAAAACACCATCCCTTACTG+CGG 0.761554 1.4:+17172814 MS.gene83048:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTAAATACTTTAATCAT+TGG + chr1.4:17173524-17173543 MS.gene83048:intron 15.0%
!!! TTAAAGTATTTAATGTGTAA+AGG - chr1.4:17173520-17173539 None:intergenic 15.0%
!! ATTTACACTAAACATTTGTT+TGG + chr1.4:17173434-17173453 MS.gene83048:intron 20.0%
!! TTACTTATATTGTTCATATG+TGG + chr1.4:17173169-17173188 MS.gene83048:intron 20.0%
!! TTGTTTATCAGATGTAAAAA+GGG - chr1.4:17173315-17173334 None:intergenic 20.0%
!!! AATGATCATTTTCATCAATT+GGG + chr1.4:17173060-17173079 MS.gene83048:CDS 20.0%
! CTTGTTTATCAGATGTAAAA+AGG - chr1.4:17173316-17173335 None:intergenic 25.0%
! TGTAAAACAACAACAATCAA+AGG - chr1.4:17173685-17173704 None:intergenic 25.0%
!! CAAGAAAAGTGTAGAAAAAA+GGG - chr1.4:17173264-17173283 None:intergenic 25.0%
!! GAATGATCATTTTCATCAAT+TGG + chr1.4:17173059-17173078 MS.gene83048:CDS 25.0%
!! TATGATTTGCCAATTTGAAA+TGG + chr1.4:17173724-17173743 MS.gene83048:intron 25.0%
!! TCAAGAAAAGTGTAGAAAAA+AGG - chr1.4:17173265-17173284 None:intergenic 25.0%
!! TTTTTGGATGCTTTTAAACA+TGG + chr1.4:17173594-17173613 MS.gene83048:intron 25.0%
AACAACACATGATCAATCAA+TGG + chr1.4:17172762-17172781 MS.gene83048:CDS 30.0%
AACAAGAAAATATTGCAGCA+AGG + chr1.4:17173330-17173349 MS.gene83048:intron 30.0%
ACAAGAAAATATTGCAGCAA+GGG + chr1.4:17173331-17173350 MS.gene83048:intron 30.0%
ATATACATTGAGGATAGACT+TGG - chr1.4:17174262-17174281 None:intergenic 30.0%
ATATATTCATGCTGCGATTT+GGG + chr1.4:17172890-17172909 MS.gene83048:intron 30.0%
ATTGGTCCTGATAAAACATA+CGG + chr1.4:17173542-17173561 MS.gene83048:intron 30.0%
CACATATTTGACTCCATTAA+TGG + chr1.4:17173653-17173672 MS.gene83048:intron 30.0%
CACTAAACATTTGTTTGGTT+TGG + chr1.4:17173439-17173458 MS.gene83048:intron 30.0%
CATTAATGGAGTCAAATATG+TGG - chr1.4:17173655-17173674 None:intergenic 30.0%
CTCAATGTATATTCCATTCT+CGG + chr1.4:17174270-17174289 MS.gene83048:CDS 30.0%
GTTAAAGCAATCTGATGAAT+CGG + chr1.4:17173201-17173220 MS.gene83048:intron 30.0%
TATATAATATACCTGTTGCG+TGG - chr1.4:17174476-17174495 None:intergenic 30.0%
TATATATTCATGCTGCGATT+TGG + chr1.4:17172889-17172908 MS.gene83048:intron 30.0%
TGAATTCACACTGTGATTTA+GGG + chr1.4:17173108-17173127 MS.gene83048:intron 30.0%
TGTTTGTAATCTGTTTCGTT+GGG - chr1.4:17173237-17173256 None:intergenic 30.0%
TTGAATTCACACTGTGATTT+AGG + chr1.4:17173107-17173126 MS.gene83048:intron 30.0%
TTGTTTGTAATCTGTTTCGT+TGG - chr1.4:17173238-17173257 None:intergenic 30.0%
TTTGACTCCATTAATGGAAA+AGG + chr1.4:17173659-17173678 MS.gene83048:intron 30.0%
!! GGATTTGTTATAACGTGTTA+TGG + chr1.4:17173615-17173634 MS.gene83048:intron 30.0%
!! TTCTAAAATTTGAAAGAGCC+TGG - chr1.4:17173490-17173509 None:intergenic 30.0%
AAGTAAGGAAAAGGTTGCAT+AGG - chr1.4:17174214-17174233 None:intergenic 35.0%
ATGTTATGTCCTTTAGCACT+TGG - chr1.4:17173847-17173866 None:intergenic 35.0%
CCACAACTACCATTTCAAAT+TGG - chr1.4:17173736-17173755 None:intergenic 35.0%
CGAGAATGGAATATACATTG+AGG - chr1.4:17174272-17174291 None:intergenic 35.0%
CGCAGCATGAATATATATAC+CGG - chr1.4:17172886-17172905 None:intergenic 35.0%
TCACAGTGTGAATTCAAAGA+TGG - chr1.4:17173104-17173123 None:intergenic 35.0%
TGGTTTCCAAAGTAAGGAAA+AGG - chr1.4:17174223-17174242 None:intergenic 35.0%
TGTATCTTTACGATTGGTGA+TGG - chr1.4:17172861-17172880 None:intergenic 35.0%
TGTTGCTAGAAAAGTTCAGA+AGG + chr1.4:17173005-17173024 MS.gene83048:CDS 35.0%
! ATGCAACCTTTTCCTTACTT+TGG + chr1.4:17174214-17174233 MS.gene83048:CDS 35.0%
! CCAATTTGAAATGGTAGTTG+TGG + chr1.4:17173733-17173752 MS.gene83048:intron 35.0%
! GTATCTTTACGATTGGTGAT+GGG - chr1.4:17172860-17172879 None:intergenic 35.0%
! TACTTTGGAAACCAAAATCC+TGG + chr1.4:17174229-17174248 MS.gene83048:CDS 35.0%
! TCAAAGGCCTTTTCCATTAA+TGG - chr1.4:17173669-17173688 None:intergenic 35.0%
! TTGGAATATGACCAGGATTT+TGG - chr1.4:17174243-17174262 None:intergenic 35.0%
!! GTTGTTGTTTGTGTAGAGAA+AGG + chr1.4:17172962-17172981 MS.gene83048:intron 35.0%
!! TAGACTATGAAGCATTGACA+CGG - chr1.4:17173372-17173391 None:intergenic 35.0%
!!! GGATTTTGGTTTCCAAAGTA+AGG - chr1.4:17174229-17174248 None:intergenic 35.0%
AATTGGGAATCGTCATAGGT+AGG + chr1.4:17173076-17173095 MS.gene83048:intron 40.0%
AGAGACAATCCAAGTGCTAA+AGG + chr1.4:17173835-17173854 MS.gene83048:CDS 40.0%
ATAGGAACGGGGTATGTATA+AGG - chr1.4:17174148-17174167 None:intergenic 40.0%
CATCAATTGGGAATCGTCAT+AGG + chr1.4:17173072-17173091 MS.gene83048:CDS 40.0%
CCAATCGTAAAGATACAGTC+CGG + chr1.4:17172864-17172883 MS.gene83048:CDS 40.0%
CTACATCTTTCTGCATCACT+AGG - chr1.4:17174403-17174422 None:intergenic 40.0%
GATAGACTTGGAATATGACC+AGG - chr1.4:17174250-17174269 None:intergenic 40.0%
TAAGGAAAAGGTTGCATAGG+TGG - chr1.4:17174211-17174230 None:intergenic 40.0%
TAGGAACGGGGTATGTATAA+GGG - chr1.4:17174147-17174166 None:intergenic 40.0%
TTCGCATGACTCTTCAGAAA+GGG - chr1.4:17173903-17173922 None:intergenic 40.0%
TTGGATTGTCTCTGTGATGA+TGG - chr1.4:17173828-17173847 None:intergenic 40.0%
! ACTCTTTTCGACTAAACACG+TGG - chr1.4:17174348-17174367 None:intergenic 40.0%
! AGTCTCTAGGTCTCTGTTTT+TGG + chr1.4:17173578-17173597 MS.gene83048:intron 40.0%
! CTCTTTTCGACTAAACACGT+GGG - chr1.4:17174347-17174366 None:intergenic 40.0%
! GTAGAAGGATACTGAGTTGA+TGG - chr1.4:17174322-17174341 None:intergenic 40.0%
! TCTCCTCCGTATGTTTTATC+AGG - chr1.4:17173551-17173570 None:intergenic 40.0%
! TTGATGGCATCTCTATTGGA+GGG - chr1.4:17174306-17174325 None:intergenic 40.0%
!! ACATTTGTTTGGTTTGGCGT+TGG + chr1.4:17173445-17173464 MS.gene83048:intron 40.0%
!! TGAGTTGATGGCATCTCTAT+TGG - chr1.4:17174310-17174329 None:intergenic 40.0%
AGACCGTGAGAAAATCAGGA+GGG + chr1.4:17173029-17173048 MS.gene83048:CDS 45.0%
AGGAGACCTATTCAGTCTCT+AGG + chr1.4:17173565-17173584 MS.gene83048:intron 45.0%
ATCTCTATTGGAGGGATAGC+TGG - chr1.4:17174298-17174317 None:intergenic 45.0%
ATGCAGATCCTGATAGACCA+CGG + chr1.4:17173789-17173808 MS.gene83048:intron 45.0%
ATGTAGTGTGTCTCCAGATG+TGG + chr1.4:17174417-17174436 MS.gene83048:CDS 45.0%
CAGAGACCTAGAGACTGAAT+AGG - chr1.4:17173574-17173593 None:intergenic 45.0%
CCGGACTGTATCTTTACGAT+TGG - chr1.4:17172867-17172886 None:intergenic 45.0%
CTAAACACGTGGGAAGTAGA+AGG - chr1.4:17174337-17174356 None:intergenic 45.0%
CTGAAGAGTCATGCGAAGTA+AGG + chr1.4:17173906-17173925 MS.gene83048:intron 45.0%
CTTCGCATGACTCTTCAGAA+AGG - chr1.4:17173904-17173923 None:intergenic 45.0%
GAAAACACCATCCCTTACTG+CGG + chr1.4:17172814-17172833 MS.gene83048:CDS 45.0%
GAAAAGGTTGCATAGGTGGT+GGG - chr1.4:17174207-17174226 None:intergenic 45.0%
GAATGGTCAATTGCAGTCCA+TGG - chr1.4:17174109-17174128 None:intergenic 45.0%
GAGCTTGAACTTAAGATGCC+TGG + chr1.4:17174445-17174464 MS.gene83048:CDS 45.0%
GGCTACTCATGACAACAGAA+TGG - chr1.4:17174126-17174145 None:intergenic 45.0%
GGTCCTGATAAAACATACGG+AGG + chr1.4:17173545-17173564 MS.gene83048:intron 45.0%
GTGTAGAGAAAGGAGTGAGA+TGG + chr1.4:17172972-17172991 MS.gene83048:intron 45.0%
TACTTGATTCTCGCATCACC+AGG + chr1.4:17173469-17173488 MS.gene83048:intron 45.0%
TGATAGACCACGGAATGACA+AGG + chr1.4:17173799-17173818 MS.gene83048:CDS 45.0%
TGATTCTTCTGCCGCAGTAA+GGG - chr1.4:17172828-17172847 None:intergenic 45.0%
TTGTCATTCCGTGGTCTATC+AGG - chr1.4:17173800-17173819 None:intergenic 45.0%
! AGTAAGGGATGGTGTTTTCG+AGG - chr1.4:17172813-17172832 None:intergenic 45.0%
! GATCCCTCCTGATTTTCTCA+CGG - chr1.4:17173035-17173054 None:intergenic 45.0%
!! ATTGGCATTGGCATAGGAAC+GGG - chr1.4:17174160-17174179 None:intergenic 45.0%
!! CTATGAAGCATTGACACGGA+CGG - chr1.4:17173368-17173387 None:intergenic 45.0%
!! GATTGGCATTGGCATAGGAA+CGG - chr1.4:17174161-17174180 None:intergenic 45.0%
!! GGTGTTTTCGAGGTGTTTAG+CGG - chr1.4:17172803-17172822 None:intergenic 45.0%
!! GTTGATGGCATCTCTATTGG+AGG - chr1.4:17174307-17174326 None:intergenic 45.0%
AGAGTCTCGAAGCAAGTCAC+CGG + chr1.4:17174363-17174382 MS.gene83048:CDS 50.0%
AGCAATCTGATGAATCGGCC+CGG + chr1.4:17173206-17173225 MS.gene83048:intron 50.0%
AGGCAGACCGTGAGAAAATC+AGG + chr1.4:17173025-17173044 MS.gene83048:CDS 50.0%
ATGGTTGCCTTGTCATTCCG+TGG - chr1.4:17173809-17173828 None:intergenic 50.0%
CAGACCGTGAGAAAATCAGG+AGG + chr1.4:17173028-17173047 MS.gene83048:CDS 50.0%
CTAGGTCGTCTTCTATGACC+CGG - chr1.4:17174385-17174404 None:intergenic 50.0%
GGAAAAGGTTGCATAGGTGG+TGG - chr1.4:17174208-17174227 None:intergenic 50.0%
GTAATCTGTTTCGTTGGGCC+AGG - chr1.4:17173232-17173251 None:intergenic 50.0%
GTGATTCTTCTGCCGCAGTA+AGG - chr1.4:17172829-17172848 None:intergenic 50.0%
TCAAGCTCTGTTGCCACATC+TGG - chr1.4:17174433-17174452 None:intergenic 50.0%
TGGTCAATTGCAGTCCATGG+CGG - chr1.4:17174106-17174125 None:intergenic 50.0%
!! GTTTTCGAGGTGTTTAGCGG+CGG - chr1.4:17172800-17172819 None:intergenic 50.0%
!! TTACGATTGGTGATGGGCAG+CGG - chr1.4:17172854-17172873 None:intergenic 50.0%
!! TTGCATAGGTGGTGGGTGAA+TGG - chr1.4:17174200-17174219 None:intergenic 50.0%
!! TTGGCATTGGCATAGGAACG+GGG - chr1.4:17174159-17174178 None:intergenic 50.0%
AATGCCAATCCCTCCTGGTC+CGG + chr1.4:17174171-17174190 MS.gene83048:CDS 55.0%
ACCTGTTGCGTGGATGATCC+AGG - chr1.4:17174466-17174485 None:intergenic 55.0%
ATGCCAATGCCAATCCCTCC+TGG + chr1.4:17174166-17174185 MS.gene83048:CDS 55.0%
GAATGGAAACCGGACCAGGA+GGG - chr1.4:17174183-17174202 None:intergenic 55.0%
GAGTCTCGAAGCAAGTCACC+GGG + chr1.4:17174364-17174383 MS.gene83048:CDS 55.0%
TCTTCTGCCGCAGTAAGGGA+TGG - chr1.4:17172824-17172843 None:intergenic 55.0%
TGAATGGAAACCGGACCAGG+AGG - chr1.4:17174184-17174203 None:intergenic 55.0%
!! GGAGGGATTGGCATTGGCAT+AGG - chr1.4:17174166-17174185 None:intergenic 55.0%
!! GGTGGTGGGTGAATGGAAAC+CGG - chr1.4:17174193-17174212 None:intergenic 55.0%
GAAACCGGACCAGGAGGGAT+TGG - chr1.4:17174178-17174197 None:intergenic 60.0%
GACTCAGAGTCATGCCGCCA+TGG + chr1.4:17174089-17174108 MS.gene83048:CDS 60.0%
GCCTGGATCATCCACGCAAC+AGG + chr1.4:17174462-17174481 MS.gene83048:CDS 60.0%
GGGATAGCTGGAGCCGAGAA+TGG - chr1.4:17174286-17174305 None:intergenic 60.0%
GGGTGAATGGAAACCGGACC+AGG - chr1.4:17174187-17174206 None:intergenic 60.0%
TCTGTTTCGTTGGGCCAGGC+CGG - chr1.4:17173228-17173247 None:intergenic 60.0%
! GGACCAGGAGGGATTGGCAT+TGG - chr1.4:17174172-17174191 None:intergenic 60.0%
! TTCGAGGTGTTTAGCGGCGG+AGG - chr1.4:17172797-17172816 None:intergenic 60.0%
CTGTTTCGTTGGGCCAGGCC+GGG - chr1.4:17173227-17173246 None:intergenic 65.0%
TCTGATGAATCGGCCCGGCC+TGG + chr1.4:17173211-17173230 MS.gene83048:intron 65.0%
TGTTTAGCGGCGGAGGCGGT+GGG - chr1.4:17172790-17172809 None:intergenic 65.0%
! GAGGTGTTTAGCGGCGGAGG+CGG - chr1.4:17172794-17172813 None:intergenic 65.0%
!! CGATTGGTGATGGGCAGCGG+AGG - chr1.4:17172851-17172870 None:intergenic 65.0%
GTGTTTAGCGGCGGAGGCGG+TGG - chr1.4:17172791-17172810 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 17172758 17174501 17172758 ID=MS.gene83048
chr1.4 mRNA 17172758 17174501 17172758 ID=MS.gene83048.t1;Parent=MS.gene83048
chr1.4 exon 17172758 17172885 17172758 ID=MS.gene83048.t1.exon1;Parent=MS.gene83048.t1
chr1.4 CDS 17172758 17172885 17172758 ID=cds.MS.gene83048.t1;Parent=MS.gene83048.t1
chr1.4 exon 17172978 17173093 17172978 ID=MS.gene83048.t1.exon2;Parent=MS.gene83048.t1
chr1.4 CDS 17172978 17173093 17172978 ID=cds.MS.gene83048.t1;Parent=MS.gene83048.t1
chr1.4 exon 17173795 17173922 17173795 ID=MS.gene83048.t1.exon3;Parent=MS.gene83048.t1
chr1.4 CDS 17173795 17173922 17173795 ID=cds.MS.gene83048.t1;Parent=MS.gene83048.t1
chr1.4 exon 17174004 17174501 17174004 ID=MS.gene83048.t1.exon4;Parent=MS.gene83048.t1
chr1.4 CDS 17174004 17174501 17174004 ID=cds.MS.gene83048.t1;Parent=MS.gene83048.t1
Gene Sequence

>MS.gene83048

ATGCAACAACACATGATCAATCAATGGAACCCACCGCCTCCGCCGCTAAACACCTCGAAAACACCATCCCTTACTGCGGCAGAAGAATCACCTCCGCTGCCCATCACCAATCGTAAAGATACAGTCCGGTATATATATTCATGCTGCGATTTGGGTAGTTTTAATATGAACGTGTTTGAGTAAGTAATGAATTGAGTGTGTTGTGTTGTTGTTTGTGTAGAGAAAGGAGTGAGATGGAATCAAGTGTTGTTGCTAGAAAAGTTCAGAAGGCAGACCGTGAGAAAATCAGGAGGGATCGCTTGAATGATCATTTTCATCAATTGGGAATCGTCATAGGTAGGTACCATCTTTGAATTCACACTGTGATTTAGGGAGTCAGTTGTGTAATTTTTTATGAATTCAAGATTTGTGTTACTTATATTGTTCATATGTGGAAGCTACATGTTAAAGCAATCTGATGAATCGGCCCGGCCTGGCCCAACGAAACAGATTACAAACAAGTGCCCTTTTTTCTACACTTTTCTTGAATCATTAACAATTATTAGTATGTATGACCCTTTTTACATCTGATAAACAAGAAAATATTGCAGCAAGGGAAACACTCAGTCCGTCCGTGTCAATGCTTCATAGTCTACAACTTTGTGAGTGTAGAGAATCTACATTTAGAAAGATTTACATTTACACTAAACATTTGTTTGGTTTGGCGTTGGCTACTTGATTCTCGCATCACCAGGCTCTTTCAAATTTTAGAAAGATTTACCTTTACACATTAAATACTTTAATCATTGGTCCTGATAAAACATACGGAGGAGACCTATTCAGTCTCTAGGTCTCTGTTTTTGGATGCTTTTAAACATGGATTTGTTATAACGTGTTATGGCATCATTGCTTGATCCACATATTTGACTCCATTAATGGAAAAGGCCTTTGATTGTTGTTGTTTTACAAGCAAATGTATAAATTAATTATGATTTGCCAATTTGAAATGGTAGTTGTGGCATAGTTGAGATATTTATGTTCATTGTACAATGATGCAGATCCTGATAGACCACGGAATGACAAGGCAACCATCATCACAGAGACAATCCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCACAAATCCCTTTCTGAAGAGTCATGCGAAGTAAGGTTCTTATTATTCGTTCAATTTGTTTTAAGATCAAGCATATGTGCAGCTCATTTATTCATTTTATTATATTCACAGCTAATACAAGAAAAGAATGAATTGCGAGAAGAGAAAGCGACTTTAAAATCTGATATAGAAAATCTTAATTCTCAGTATCAGCAGAGACTCAGAGTCATGCCGCCATGGACTGCAATTGACCATTCTGTTGTCATGAGTAGCCCTTATACATACCCCGTTCCTATGCCAATGCCAATCCCTCCTGGTCCGGTTTCCATTCACCCACCACCTATGCAACCTTTTCCTTACTTTGGAAACCAAAATCCTGGTCATATTCCAAGTCTATCCTCAATGTATATTCCATTCTCGGCTCCAGCTATCCCTCCAATAGAGATGCCATCAACTCAGTATCCTTCTACTTCCCACGTGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCGGGTCATAGAAGACGACCTAGTGATGCAGAAAGATGTAGTGTGTCTCCAGATGTGGCAACAGAGCTTGAACTTAAGATGCCTGGATCATCCACGCAACAGGTATATTATATATCTTAA
Protein sequence

>MS.gene83048.t1

MQQHMINQWNPPPPPLNTSKTPSLTAAEESPPLPITNRKDTVRERSEMESSVVARKVQKADREKIRRDRLNDHFHQLGIVIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESCELIQEKNELREEKATLKSDIENLNSQYQQRLRVMPPWTAIDHSVVMSSPYTYPVPMPMPIPPGPVSIHPPPMQPFPYFGNQNPGHIPSLSSMYIPFSAPAIPPIEMPSTQYPSTSHVFSRKESRSKSPGHRRRPSDAERCSVSPDVATELELKMPGSSTQQVYYIS