AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83397

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83397.t1 MTR_7g110060 94.048 84 5 0 5 88 227 310 3.37e-52 167
MS.gene83397.t1 MTR_7g110060 94.048 84 5 0 5 88 227 310 8.28e-52 167
MS.gene83397.t1 MTR_1g086370 91.667 84 7 0 5 88 108 191 1.79e-51 163
MS.gene83397.t1 MTR_1g086370 91.667 84 7 0 5 88 194 277 5.98e-51 164
MS.gene83397.t1 MTR_1g086370 91.667 84 7 0 5 88 227 310 7.65e-51 164
MS.gene83397.t1 MTR_1g084760 90.476 84 8 0 5 88 227 310 1.05e-49 162
MS.gene83397.t1 MTR_7g076030 90.123 81 8 0 8 88 189 269 2.96e-49 159
MS.gene83397.t1 MTR_2g005620 89.286 84 9 0 5 88 242 325 4.61e-49 160
MS.gene83397.t1 MTR_7g076030 90.123 81 8 0 8 88 296 376 6.12e-49 161
MS.gene83397.t1 MTR_2g083940 88.095 84 10 0 5 88 186 269 1.09e-47 155
MS.gene83397.t1 MTR_2g083940 88.095 84 10 0 5 88 240 323 2.39e-47 156
MS.gene83397.t1 MTR_8g432510 86.420 81 11 0 8 88 294 374 1.68e-46 154
MS.gene83397.t1 MTR_2g016490 83.333 84 14 0 5 88 192 275 3.28e-46 152
MS.gene83397.t1 MTR_7g114300 50.000 68 34 0 9 76 263 330 1.84e-19 81.6
MS.gene83397.t1 MTR_4g061330 46.970 66 35 0 13 78 4 69 3.42e-19 77.4
MS.gene83397.t1 MTR_4g118780 48.529 68 35 0 9 76 260 327 6.19e-19 80.1
MS.gene83397.t1 MTR_5g008860 45.588 68 37 0 9 76 296 363 6.46e-19 80.1
MS.gene83397.t1 MTR_4g061320 46.970 66 35 0 13 78 200 265 1.31e-18 79.0
MS.gene83397.t1 MTR_7g114300 48.101 79 40 1 9 86 263 341 1.40e-18 79.0
MS.gene83397.t1 MTR_7g114300 48.101 79 40 1 9 86 263 341 1.50e-18 79.0
MS.gene83397.t1 MTR_7g114300 48.101 79 40 1 9 86 263 341 1.65e-18 78.6
MS.gene83397.t1 MTR_2g020210 47.059 68 36 0 9 76 258 325 1.70e-18 79.0
MS.gene83397.t1 MTR_7g078690 50.820 61 30 0 13 73 198 258 2.04e-18 78.2
MS.gene83397.t1 MTR_1g081870 47.059 68 36 0 9 76 278 345 2.15e-18 78.6
MS.gene83397.t1 MTR_4g087620 41.667 72 42 0 13 84 215 286 2.41e-18 78.2
MS.gene83397.t1 MTR_3g085650 41.667 84 45 1 8 91 570 649 3.06e-18 78.2
MS.gene83397.t1 MTR_3g085650 41.667 84 45 1 8 91 570 649 3.07e-18 78.2
MS.gene83397.t1 MTR_3g085650 41.667 84 45 1 8 91 570 649 3.07e-18 78.2
MS.gene83397.t1 MTR_3g085650 41.667 84 45 1 8 91 570 649 3.08e-18 78.2
MS.gene83397.t1 MTR_8g099770 45.570 79 42 1 9 86 246 324 3.57e-18 78.2
MS.gene83397.t1 MTR_8g461040 54.412 68 28 2 13 78 190 256 4.24e-18 77.8
MS.gene83397.t1 MTR_8g080190 46.970 66 35 0 8 73 539 604 7.88e-18 77.0
MS.gene83397.t1 MTR_8g098845 47.541 61 32 0 13 73 212 272 8.11e-18 76.6
MS.gene83397.t1 MTR_4g007750 48.438 64 33 0 14 77 181 244 8.70e-18 76.3
MS.gene83397.t1 MTR_8g080190 46.970 66 35 0 8 73 539 604 8.70e-18 77.0
MS.gene83397.t1 MTR_8g028720 50.820 61 30 0 13 73 197 257 1.55e-17 75.9
MS.gene83397.t1 MTR_2g085200 43.478 69 39 0 8 76 289 357 1.59e-17 76.3
MS.gene83397.t1 MTR_5g091680 51.471 68 30 2 13 78 186 252 1.61e-17 76.3
MS.gene83397.t1 MTR_5g091680 51.471 68 30 2 13 78 186 252 1.70e-17 75.9
MS.gene83397.t1 MTR_5g091680 51.471 68 30 2 13 78 186 252 1.86e-17 75.9
MS.gene83397.t1 MTR_5g091680 51.471 68 30 2 13 78 184 250 1.88e-17 75.9
MS.gene83397.t1 MTR_8g086000 44.286 70 39 0 13 82 193 262 2.21e-17 75.5
MS.gene83397.t1 MTR_8g086000 44.286 70 39 0 13 82 236 305 2.49e-17 75.5
MS.gene83397.t1 MTR_2g032060 41.333 75 40 1 14 88 164 234 2.60e-17 74.7
MS.gene83397.t1 MTR_3g460950 39.535 86 52 0 4 89 184 269 3.27e-17 75.1
MS.gene83397.t1 MTR_3g060330 39.535 86 52 0 4 89 184 269 3.27e-17 75.1
MS.gene83397.t1 MTR_4g094430 42.857 63 36 0 14 76 164 226 3.54e-17 74.3
MS.gene83397.t1 MTR_3g098760 49.231 65 33 0 12 76 256 320 3.93e-17 75.1
MS.gene83397.t1 MTR_8g070930 56.667 60 25 1 12 71 301 359 3.98e-17 75.1
MS.gene83397.t1 MTR_4g078290 42.647 68 39 0 9 76 285 352 5.04e-17 74.7
MS.gene83397.t1 MTR_4g078290 42.647 68 39 0 9 76 285 352 5.04e-17 74.7
MS.gene83397.t1 MTR_5g010030 41.791 67 39 0 13 79 201 267 5.38e-17 74.3
MS.gene83397.t1 MTR_1g098300 36.782 87 55 0 8 94 281 367 7.14e-17 74.3
MS.gene83397.t1 MTR_4g117490 52.941 68 29 2 13 78 189 255 1.08e-16 73.9
MS.gene83397.t1 MTR_4g117490 52.941 68 29 2 13 78 189 255 1.22e-16 73.6
MS.gene83397.t1 MTR_2g090405 40.580 69 41 0 6 74 294 362 1.41e-16 73.6
MS.gene83397.t1 MTR_6g079470 50.000 68 31 2 13 78 253 319 2.04e-16 73.2
MS.gene83397.t1 MTR_6g087920 47.692 65 34 0 12 76 273 337 2.16e-16 72.8
MS.gene83397.t1 MTR_8g092290 38.356 73 45 0 9 81 297 369 2.39e-16 72.8
MS.gene83397.t1 MTR_4g103810 46.774 62 33 0 12 73 268 329 2.43e-16 72.8
MS.gene83397.t1 MTR_2g072840 52.941 68 29 2 13 78 189 255 2.56e-16 72.8
MS.gene83397.t1 MTR_4g103810 46.774 62 33 0 12 73 378 439 2.63e-16 72.8
MS.gene83397.t1 MTR_4g109090 42.254 71 41 0 6 76 110 180 2.87e-16 72.4
MS.gene83397.t1 MTR_4g109090 42.254 71 41 0 6 76 258 328 2.93e-16 72.4
MS.gene83397.t1 MTR_6g013030 44.118 68 38 0 9 76 266 333 3.54e-16 72.4
MS.gene83397.t1 MTR_2g021330 50.000 68 31 2 13 78 189 255 3.59e-16 72.0
MS.gene83397.t1 MTR_2g072840 52.941 68 29 2 13 78 99 165 4.11e-16 72.0
MS.gene83397.t1 MTR_2g072840 52.941 68 29 2 13 78 189 255 4.87e-16 72.0
MS.gene83397.t1 MTR_3g089510 48.529 68 32 2 13 78 189 255 5.48e-16 71.6
MS.gene83397.t1 MTR_3g089510 48.529 68 32 2 13 78 177 243 6.78e-16 71.6
MS.gene83397.t1 MTR_8g106960 50.000 68 31 2 13 78 282 348 6.85e-16 71.6
MS.gene83397.t1 MTR_1g075610 44.444 63 35 0 14 76 186 248 7.64e-16 70.9
MS.gene83397.t1 MTR_8g106960 50.000 68 31 2 13 78 282 348 8.40e-16 71.2
MS.gene83397.t1 MTR_2g021330 50.000 68 31 2 13 78 189 255 8.52e-16 71.2
MS.gene83397.t1 MTR_7g011800 41.176 68 40 0 9 76 276 343 1.01e-15 70.9
MS.gene83397.t1 MTR_8g461270 43.056 72 38 1 8 76 203 274 1.18e-15 70.5
MS.gene83397.t1 MTR_3g112210 42.857 70 40 0 13 82 193 262 1.53e-15 70.5
MS.gene83397.t1 MTR_8g103240 49.180 61 31 0 12 72 286 346 2.16e-15 70.1
MS.gene83397.t1 MTR_8g012450 43.077 65 37 0 9 73 154 218 3.25e-15 69.7
MS.gene83397.t1 MTR_6g080470 44.262 61 34 0 14 74 172 232 5.22e-15 68.9
MS.gene83397.t1 MTR_8g071230 39.706 68 41 0 9 76 154 221 7.32e-15 68.6
MS.gene83397.t1 MTR_8g012450 43.077 65 37 0 9 73 154 218 1.99e-14 67.4
MS.gene83397.t1 MTR_4g087620 45.614 57 31 0 13 69 215 271 2.34e-14 66.6
MS.gene83397.t1 MTR_3g096960 43.056 72 33 1 14 77 191 262 4.61e-14 66.2
MS.gene83397.t1 MTR_3g040810 41.667 60 35 0 14 73 198 257 8.98e-14 65.5
MS.gene83397.t1 MTR_3g040520 41.667 60 35 0 14 73 200 259 1.46e-13 64.7
MS.gene83397.t1 MTR_5g026960 38.235 68 42 0 9 76 154 221 1.52e-13 64.7
MS.gene83397.t1 MTR_3g054080 42.373 59 34 0 16 74 176 234 3.28e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83397.t1 AT5G14640 92.857 84 6 0 5 88 226 309 6.34e-51 165
MS.gene83397.t1 AT5G14640 92.857 84 6 0 5 88 226 309 6.34e-51 165
MS.gene83397.t1 AT3G05840 91.667 84 7 0 5 88 225 308 1.54e-50 164
MS.gene83397.t1 AT3G05840 91.667 84 7 0 5 88 225 308 1.54e-50 164
MS.gene83397.t1 AT5G26751 91.667 84 7 0 5 88 221 304 1.85e-50 164
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 108 191 6.64e-50 159
MS.gene83397.t1 AT1G57870 90.476 84 8 0 5 88 234 317 2.20e-49 161
MS.gene83397.t1 AT1G57870 90.476 84 8 0 5 88 234 317 2.20e-49 161
MS.gene83397.t1 AT1G57870 90.476 84 8 0 5 88 234 317 2.20e-49 161
MS.gene83397.t1 AT1G57870 90.476 84 8 0 5 88 234 317 3.87e-49 161
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G09840 88.095 84 10 0 5 88 235 318 5.26e-49 160
MS.gene83397.t1 AT1G06390 88.095 84 10 0 5 88 222 305 3.35e-48 157
MS.gene83397.t1 AT1G06390 88.095 84 10 0 5 88 222 305 3.35e-48 157
MS.gene83397.t1 AT4G00720 85.185 81 12 0 8 88 293 373 6.62e-47 155
MS.gene83397.t1 AT4G18710 85.714 84 12 0 5 88 192 275 7.22e-47 154
MS.gene83397.t1 AT2G30980 86.905 84 11 0 5 88 224 307 8.57e-47 154
MS.gene83397.t1 AT4G18710 83.333 84 14 0 5 88 186 269 5.44e-46 149
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 257 337 1.21e-42 142
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 264 344 1.30e-42 142
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 257 337 1.57e-42 142
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 257 337 5.41e-42 142
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 264 344 6.54e-42 142
MS.gene83397.t1 AT3G61160 77.778 81 18 0 8 88 257 337 7.05e-42 141
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.40e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.40e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.49e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.49e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.49e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.49e-19 82.0
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 456 521 1.49e-19 82.0
MS.gene83397.t1 AT2G46070 50.000 66 33 0 13 78 201 266 2.75e-19 80.5
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 322 387 3.50e-19 80.9
MS.gene83397.t1 AT5G63370 50.000 66 33 0 8 73 322 387 3.50e-19 80.9
MS.gene83397.t1 AT5G63370 49.254 67 34 0 8 74 322 388 4.18e-19 80.5
MS.gene83397.t1 AT2G46070 54.098 61 28 0 13 73 201 261 4.49e-19 80.1
MS.gene83397.t1 AT2G46070 54.098 61 28 0 13 73 235 295 4.71e-19 80.1
MS.gene83397.t1 AT2G38620 48.438 64 33 0 14 77 119 182 5.37e-19 78.6
MS.gene83397.t1 AT3G59790 42.857 70 40 0 13 82 220 289 5.85e-19 80.1
MS.gene83397.t1 AT2G38620 48.438 64 33 0 14 77 181 244 6.94e-19 79.0
MS.gene83397.t1 AT3G48750 40.789 76 43 1 14 87 164 239 7.23e-19 79.0
MS.gene83397.t1 AT1G54610 48.529 68 35 0 9 76 274 341 7.69e-19 80.1
MS.gene83397.t1 AT1G54610 48.529 68 35 0 9 76 274 341 7.69e-19 80.1
MS.gene83397.t1 AT1G54610 48.529 68 35 0 9 76 274 341 7.69e-19 80.1
MS.gene83397.t1 AT1G01560 50.820 61 30 0 13 73 200 260 1.18e-18 79.0
MS.gene83397.t1 AT1G01560 50.820 61 30 0 13 73 200 260 2.47e-18 78.2
MS.gene83397.t1 AT1G53050 43.662 71 40 0 6 76 287 357 4.46e-18 77.8
MS.gene83397.t1 AT1G53050 43.662 71 40 0 6 76 287 357 4.46e-18 77.8
MS.gene83397.t1 AT1G67580 46.970 66 35 0 8 73 560 625 4.52e-18 77.8
MS.gene83397.t1 AT1G67580 46.970 66 35 0 8 73 560 625 4.52e-18 77.8
MS.gene83397.t1 AT4G10010 47.761 67 35 0 8 74 311 377 7.08e-18 77.4
MS.gene83397.t1 AT1G57700 42.029 69 40 0 8 76 301 369 7.68e-18 77.0
MS.gene83397.t1 AT1G71530 47.692 65 34 0 12 76 306 370 7.96e-18 77.0
MS.gene83397.t1 AT4G10010 47.761 67 35 0 8 74 131 197 8.79e-18 77.0
MS.gene83397.t1 AT1G09600 42.029 69 40 0 8 76 318 386 1.04e-17 76.6
MS.gene83397.t1 AT1G33770 43.478 69 39 0 8 76 296 364 1.37e-17 76.3
MS.gene83397.t1 AT1G76540 44.000 75 38 1 14 88 182 252 1.66e-17 75.5
MS.gene83397.t1 AT3G54180 46.875 64 34 0 14 77 179 242 1.67e-17 75.5
MS.gene83397.t1 AT3G45640 43.939 66 37 0 13 78 198 263 2.08e-17 75.5
MS.gene83397.t1 AT1G73690 42.667 75 39 2 14 85 169 242 2.17e-17 75.5
MS.gene83397.t1 AT5G35980 58.333 60 24 1 12 71 283 341 2.49e-17 75.9
MS.gene83397.t1 AT5G35980 58.333 60 24 1 12 71 283 341 2.54e-17 75.5
MS.gene83397.t1 AT5G35980 58.333 60 24 1 12 71 248 306 2.69e-17 75.5
MS.gene83397.t1 AT1G71530 47.692 65 34 0 12 76 306 370 3.24e-17 75.1
MS.gene83397.t1 AT1G71530 47.692 65 34 0 12 76 306 370 3.25e-17 75.1
MS.gene83397.t1 AT1G03740 46.032 63 34 0 12 74 372 434 3.41e-17 75.1
MS.gene83397.t1 AT1G03740 46.032 63 34 0 12 74 372 434 3.42e-17 75.1
MS.gene83397.t1 AT3G14720 52.941 68 29 2 13 78 189 255 3.71e-17 75.1
MS.gene83397.t1 AT3G14720 52.941 68 29 2 13 78 189 255 3.71e-17 75.1
MS.gene83397.t1 AT4G01370 50.820 61 30 0 13 73 203 263 4.03e-17 74.7
MS.gene83397.t1 AT1G18150 51.471 68 30 2 13 78 268 334 4.30e-17 75.1
MS.gene83397.t1 AT1G18150 51.471 68 30 2 13 78 268 334 4.30e-17 75.1
MS.gene83397.t1 AT1G18150 51.471 68 30 2 13 78 268 334 4.30e-17 75.1
MS.gene83397.t1 AT5G50860 47.619 63 33 0 12 74 273 335 4.82e-17 74.7
MS.gene83397.t1 AT1G20930 47.619 63 33 0 14 76 184 246 5.07e-17 73.9
MS.gene83397.t1 AT4G11330 45.902 61 33 0 13 73 203 263 5.22e-17 74.3
MS.gene83397.t1 AT1G73670 51.471 68 30 2 13 78 254 320 6.21e-17 74.7
MS.gene83397.t1 AT1G53510 51.471 68 30 2 13 78 189 255 8.52e-17 74.3
MS.gene83397.t1 AT5G19010 51.471 68 30 2 13 78 189 255 8.80e-17 73.9
MS.gene83397.t1 AT1G18670 43.478 69 39 0 8 76 287 355 9.08e-17 73.9
MS.gene83397.t1 AT1G18670 43.478 69 39 0 8 76 287 355 9.12e-17 73.9
MS.gene83397.t1 AT1G18670 43.478 69 39 0 8 76 287 355 9.13e-17 73.9
MS.gene83397.t1 AT3G14720 52.941 68 29 2 13 78 189 255 9.65e-17 73.9
MS.gene83397.t1 AT1G74330 43.662 71 40 0 6 76 276 346 1.19e-16 73.6
MS.gene83397.t1 AT1G74330 43.662 71 40 0 6 76 276 346 1.20e-16 73.6
MS.gene83397.t1 AT1G74330 43.662 71 40 0 6 76 276 346 1.20e-16 73.6
MS.gene83397.t1 AT2G42880 48.529 68 32 2 13 78 189 255 1.70e-16 73.2
MS.gene83397.t1 AT2G42880 48.529 68 32 2 13 78 189 255 1.77e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.18e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.18e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.18e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.18e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.18e-16 73.2
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 2.49e-16 72.8
MS.gene83397.t1 AT5G50860 47.619 63 33 0 12 74 273 335 2.75e-16 72.8
MS.gene83397.t1 AT2G43790 45.161 62 34 0 13 74 223 284 2.77e-16 72.4
MS.gene83397.t1 AT3G18040 50.000 68 31 2 13 78 296 362 2.88e-16 72.8
MS.gene83397.t1 AT3G18040 50.000 68 31 2 13 78 296 362 2.89e-16 72.8
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 163 227 3.01e-16 72.4
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 154 218 3.15e-16 72.4
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 154 218 3.29e-16 72.4
MS.gene83397.t1 AT1G07880 41.667 72 42 0 13 84 193 264 3.37e-16 72.0
MS.gene83397.t1 AT3G18040 50.000 68 31 2 13 78 187 253 3.71e-16 72.4
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 154 218 3.77e-16 72.0
MS.gene83397.t1 AT3G18040 50.000 68 31 2 13 78 182 248 3.78e-16 72.4
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 163 227 3.79e-16 72.4
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 154 218 4.10e-16 72.0
MS.gene83397.t1 AT1G66750 45.000 60 33 0 14 73 171 230 4.18e-16 71.6
MS.gene83397.t1 AT5G44290 42.857 70 40 0 7 76 291 360 4.25e-16 72.0
MS.gene83397.t1 AT4G19110 42.647 68 39 0 9 76 154 221 4.51e-16 72.0
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 162 226 4.52e-16 72.0
MS.gene83397.t1 AT4G13020 47.692 65 34 0 9 73 162 226 4.52e-16 72.0
MS.gene83397.t1 AT1G18040 42.188 64 37 0 14 77 170 233 4.67e-16 72.0
MS.gene83397.t1 AT3G18040 50.000 68 31 2 13 78 99 165 5.00e-16 72.0
MS.gene83397.t1 AT1G01560 52.632 57 27 0 13 69 200 256 5.50e-16 70.9
MS.gene83397.t1 AT1G01560 52.632 57 27 0 13 69 200 256 5.50e-16 70.9
MS.gene83397.t1 AT5G45430 42.647 68 39 0 9 76 154 221 5.51e-16 71.6
MS.gene83397.t1 AT4G19110 42.647 68 39 0 9 76 154 221 5.63e-16 71.6
MS.gene83397.t1 AT5G45430 42.647 68 39 0 9 76 154 221 5.84e-16 71.6
MS.gene83397.t1 AT4G22940 41.176 68 40 0 9 76 260 327 7.68e-16 71.2
MS.gene83397.t1 AT4G22940 41.176 68 40 0 9 76 260 327 8.25e-16 71.2
MS.gene83397.t1 AT4G19110 42.647 68 39 0 9 76 98 165 8.35e-16 71.2
MS.gene83397.t1 AT3G05050 44.444 63 35 0 14 76 299 361 1.21e-15 70.9
MS.gene83397.t1 AT3G05050 44.444 63 35 0 14 76 299 361 1.21e-15 70.9
MS.gene83397.t1 AT3G05050 44.444 63 35 0 14 76 299 361 1.21e-15 70.9
MS.gene83397.t1 AT3G01085 43.077 65 37 0 12 76 274 338 1.41e-15 70.9
MS.gene83397.t1 AT3G01085 43.077 65 37 0 12 76 274 338 1.45e-15 70.5
MS.gene83397.t1 AT3G01085 43.077 65 37 0 12 76 274 338 1.45e-15 70.5
MS.gene83397.t1 AT2G01450 48.438 64 30 2 13 74 180 242 2.56e-15 70.1
MS.gene83397.t1 AT2G01450 48.438 64 30 2 13 74 180 242 2.56e-15 70.1
MS.gene83397.t1 AT2G01450 48.438 64 30 2 13 74 180 242 2.56e-15 70.1
MS.gene83397.t1 AT2G01450 48.438 64 30 2 13 74 180 242 2.56e-15 70.1
MS.gene83397.t1 AT2G38620 47.368 57 30 0 14 70 181 237 2.66e-15 68.9
MS.gene83397.t1 AT2G38620 47.368 57 30 0 14 70 181 237 2.66e-15 68.9
MS.gene83397.t1 AT4G28980 42.500 80 42 3 12 88 291 369 3.17e-15 69.7
MS.gene83397.t1 AT4G28980 42.500 80 42 3 12 88 291 369 3.17e-15 69.7
MS.gene83397.t1 AT4G28980 42.500 80 42 3 12 88 291 369 3.17e-15 69.7
MS.gene83397.t1 AT5G39420 41.935 62 36 0 12 73 264 325 5.68e-15 68.9
MS.gene83397.t1 AT1G59580 40.000 70 42 0 13 82 193 262 1.32e-14 67.8
MS.gene83397.t1 AT1G59580 40.000 70 42 0 13 82 193 262 1.32e-14 67.8
MS.gene83397.t1 AT2G18170 39.744 78 46 1 13 89 193 270 1.60e-14 67.4
MS.gene83397.t1 AT1G07880 49.123 57 29 0 13 69 193 249 6.73e-14 65.1
MS.gene83397.t1 AT1G10210 38.571 70 43 0 13 82 193 262 7.49e-14 65.5
MS.gene83397.t1 AT1G10210 38.571 70 43 0 13 82 193 262 7.49e-14 65.5
MS.gene83397.t1 AT1G10210 38.571 70 43 0 13 82 193 262 7.49e-14 65.5
MS.gene83397.t1 AT5G64960 43.333 60 34 0 14 73 201 260 1.32e-13 65.1
MS.gene83397.t1 AT5G64960 43.333 60 34 0 14 73 148 207 1.51e-13 64.7
MS.gene83397.t1 AT5G63610 38.889 72 36 1 14 77 196 267 1.72e-13 64.7
MS.gene83397.t1 AT4G36450 38.571 70 43 0 13 82 190 259 1.77e-13 64.7
MS.gene83397.t1 AT5G10270 41.667 60 35 0 14 73 201 260 4.46e-13 63.5
MS.gene83397.t1 AT1G71530 53.061 49 23 0 12 60 306 354 1.04e-12 62.4
MS.gene83397.t1 AT2G40120 48.485 66 32 2 13 78 425 488 1.17e-11 59.7
MS.gene83397.t1 AT2G23070 36.471 85 42 3 14 89 285 366 1.73e-11 58.9
MS.gene83397.t1 AT3G17750 46.154 65 34 1 12 76 990 1053 1.78e-11 58.9
MS.gene83397.t1 AT4G01595 52.083 48 23 0 31 78 20 67 3.52e-11 55.8

Find 19 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGATTTCTTCCCTTGT+TGG 0.201375 8.4:-32062665 None:intergenic
ACATATCTTACATTTGTTCT+AGG 0.212372 8.4:+32062236 MS.gene83397:CDS
TAATTATACCTAGTATAATT+AGG 0.273993 8.4:-32062695 None:intergenic
TCTTATCAGCCACTGTTTCC+TGG 0.308862 8.4:+32062439 MS.gene83397:intron
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 8.4:+32062319 MS.gene83397:CDS
GAACAAATGTAAGATATGTT+TGG 0.421520 8.4:-32062232 None:intergenic
TACTCAGTTGCACCGAATAT+AGG 0.447929 8.4:-32062277 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 8.4:-32062477 None:intergenic
AGAGCTCCTGAGCCTATATT+CGG 0.474591 8.4:+32062265 MS.gene83397:CDS
GTCATTGACATCTGGTCAGC+TGG 0.482850 8.4:+32062307 MS.gene83397:CDS
CCACTGTTTCCTGGTGAGAG+TGG 0.506242 8.4:+32062448 MS.gene83397:CDS
CCAACTTGTGGAAATTATCA+AGG 0.511188 8.4:+32062477 MS.gene83397:CDS
ACACCACAGTCATTGACATC+TGG 0.524089 8.4:+32062299 MS.gene83397:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 8.4:+32062687 MS.gene83397:CDS
GTTGCACCGAATATAGGCTC+AGG 0.565527 8.4:-32062271 None:intergenic
TGGTCTACTCCACTCTCACC+AGG 0.583110 8.4:-32062457 None:intergenic
CCACTCTCACCAGGAAACAG+TGG 0.653830 8.4:-32062448 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 8.4:+32062465 MS.gene83397:CDS
TGACCAGATGTCAATGACTG+TGG 0.757242 8.4:-32062302 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATTATATATAAACTT+GGG + chr8.4:32062709-32062728 MS.gene83397:intron 10.0%
!! GGTATAATTATATATAAACT+TGG + chr8.4:32062708-32062727 MS.gene83397:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG - chr8.4:32062698-32062717 None:intergenic 15.0%
!!! TATTTTTAGTTCAGTTAATT+CGG + chr8.4:32062606-32062625 MS.gene83397:intron 15.0%
!! AAACGAAACAAAAATATGAA+AGG - chr8.4:32062581-32062600 None:intergenic 20.0%
! AAATCTTTGTAGGTTAATCA+AGG + chr8.4:32062732-32062751 MS.gene83397:intron 25.0%
! ACATATCTTACATTTGTTCT+AGG + chr8.4:32062236-32062255 MS.gene83397:CDS 25.0%
! GAACAAATGTAAGATATGTT+TGG - chr8.4:32062235-32062254 None:intergenic 25.0%
GCATGAATCCTAATTATACT+AGG + chr8.4:32062687-32062706 MS.gene83397:CDS 30.0%
TAAACTTGGGAAATCTTTGT+AGG + chr8.4:32062722-32062741 MS.gene83397:intron 30.0%
ATATGTTCAAGCTAGTAGCA+AGG - chr8.4:32062545-32062564 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG + chr8.4:32062477-32062496 MS.gene83397:CDS 35.0%
GTTAATTCGGAAGTTTCATG+TGG + chr8.4:32062619-32062638 MS.gene83397:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG - chr8.4:32062480-32062499 None:intergenic 35.0%
ACACAATGAAGCTAGTTACC+TGG - chr8.4:32062360-32062379 None:intergenic 40.0%
CACTTGATTTCTTCCCTTGT+TGG - chr8.4:32062668-32062687 None:intergenic 40.0%
CTAGCTTCATTGTGTATGCT+TGG + chr8.4:32062365-32062384 MS.gene83397:intron 40.0%
TACTCAGTTGCACCGAATAT+AGG - chr8.4:32062280-32062299 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG + chr8.4:32062334-32062353 MS.gene83397:CDS 40.0%
!!! AGGTTTTAGGTACTCCAACA+AGG + chr8.4:32062651-32062670 MS.gene83397:intron 40.0%
!!! GGTTTTAGGTACTCCAACAA+GGG + chr8.4:32062652-32062671 MS.gene83397:intron 40.0%
ACACCACAGTCATTGACATC+TGG + chr8.4:32062299-32062318 MS.gene83397:CDS 45.0%
AGAGCTCCTGAGCCTATATT+CGG + chr8.4:32062265-32062284 MS.gene83397:CDS 45.0%
GTTTCATGTGGTTCACTTGC+AGG + chr8.4:32062631-32062650 MS.gene83397:intron 45.0%
TCTTATCAGCCACTGTTTCC+TGG + chr8.4:32062439-32062458 MS.gene83397:intron 45.0%
TGACCAGATGTCAATGACTG+TGG - chr8.4:32062305-32062324 None:intergenic 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG + chr8.4:32062638-32062657 MS.gene83397:intron 45.0%
GAGTGGAGTAGACCAACTTG+TGG + chr8.4:32062465-32062484 MS.gene83397:CDS 50.0%
GTCATTGACATCTGGTCAGC+TGG + chr8.4:32062307-32062326 MS.gene83397:CDS 50.0%
GTTGCACCGAATATAGGCTC+AGG - chr8.4:32062274-32062293 None:intergenic 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG + chr8.4:32062339-32062358 MS.gene83397:CDS 50.0%
CCACTCTCACCAGGAAACAG+TGG - chr8.4:32062451-32062470 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG + chr8.4:32062448-32062467 MS.gene83397:CDS 55.0%
TGGTCAGCTGGTTGCGTACT+TGG + chr8.4:32062319-32062338 MS.gene83397:CDS 55.0%
TGGTCTACTCCACTCTCACC+AGG - chr8.4:32062460-32062479 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 32062208 32062818 32062208 ID=MS.gene83397
chr8.4 mRNA 32062208 32062818 32062208 ID=MS.gene83397.t1;Parent=MS.gene83397
chr8.4 exon 32062208 32062360 32062208 ID=MS.gene83397.t1.exon1;Parent=MS.gene83397.t1
chr8.4 CDS 32062208 32062360 32062208 ID=cds.MS.gene83397.t1;Parent=MS.gene83397.t1
chr8.4 exon 32062448 32062498 32062448 ID=MS.gene83397.t1.exon2;Parent=MS.gene83397.t1
chr8.4 CDS 32062448 32062498 32062448 ID=cds.MS.gene83397.t1;Parent=MS.gene83397.t1
chr8.4 exon 32062653 32062708 32062653 ID=MS.gene83397.t1.exon3;Parent=MS.gene83397.t1
chr8.4 CDS 32062653 32062708 32062653 ID=cds.MS.gene83397.t1;Parent=MS.gene83397.t1
chr8.4 exon 32062791 32062818 32062791 ID=MS.gene83397.t1.exon4;Parent=MS.gene83397.t1
chr8.4 CDS 32062791 32062818 32062791 ID=cds.MS.gene83397.t1;Parent=MS.gene83397.t1
Gene Sequence

>MS.gene83397

ATGGTTTTACAGGTTAAATGTGAACCAAACATATCTTACATTTGTTCTAGGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGGTAACTAGCTTCATTGTGTATGCTTGGTCAAGTTACATTTAGAATTCATGTATGTCAAAACTAATGATGAATTTCTGTTCTTATCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTAAGATATGTTTTAAACAATAATATAGCAATAGTGATATTTACCTTGCTACTAGCTTGAACATATCAGTTTTAAGTGACCTTTCATATTTTTGTTTCGTTTTGTGCTATTTTTAGTTCAGTTAATTCGGAAGTTTCATGTGGTTCACTTGCAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGGTATAATTATATATAAACTTGGGAAATCTTTGTAGGTTAATCAAGGTTTGAATTCATTGAATTAGAAGTATATCATATATAGTTTGATATTGCTAGCTCATCGCTCTTAG
Protein sequence

>MS.gene83397.t1

MVLQVKCEPNISYICSRYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTSLILLAHRS