Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83440.t1 | XP_024632961.1 | 84.1 | 800 | 99 | 4 | 1 | 772 | 1 | 800 | 0.00E+00 | 1342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83440.t1 | Q9SZL8 | 26.7 | 636 | 396 | 11 | 32 | 665 | 70 | 637 | 4.2e-62 | 241.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83440.t1 | D3YBB9 | 76.5 | 774 | 162 | 4 | 1 | 764 | 49 | 812 | 0.0e+00 | 1194.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83440.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83440.t1 | MTR_0558s0020 | 86.486 | 296 | 39 | 1 | 1 | 295 | 1 | 296 | 0.0 | 539 |
| MS.gene83440.t1 | MTR_1g083640 | 82.042 | 284 | 35 | 1 | 1 | 268 | 1 | 284 | 1.62e-168 | 488 |
| MS.gene83440.t1 | MTR_8g446020 | 73.220 | 295 | 40 | 1 | 1 | 295 | 1 | 256 | 1.53e-149 | 438 |
| MS.gene83440.t1 | MTR_2g014100 | 81.224 | 245 | 37 | 1 | 1 | 236 | 1 | 245 | 1.31e-139 | 412 |
| MS.gene83440.t1 | MTR_6g090505 | 82.700 | 237 | 41 | 0 | 65 | 301 | 1 | 237 | 8.36e-139 | 415 |
| MS.gene83440.t1 | MTR_6g090505 | 66.667 | 102 | 7 | 2 | 396 | 495 | 230 | 306 | 3.31e-33 | 132 |
| MS.gene83440.t1 | MTR_0337s0040 | 71.538 | 260 | 34 | 2 | 1 | 259 | 1 | 221 | 2.73e-121 | 364 |
| MS.gene83440.t1 | MTR_3g008240 | 83.251 | 203 | 33 | 1 | 1 | 202 | 1 | 203 | 4.63e-116 | 350 |
| MS.gene83440.t1 | MTR_4g040430 | 81.683 | 202 | 33 | 1 | 1 | 202 | 1 | 198 | 4.41e-113 | 342 |
| MS.gene83440.t1 | MTR_0337s0060 | 58.544 | 316 | 31 | 4 | 447 | 759 | 21 | 239 | 6.84e-108 | 330 |
| MS.gene83440.t1 | MTR_5g071590 | 72.222 | 180 | 37 | 2 | 1 | 167 | 1 | 180 | 2.09e-86 | 272 |
| MS.gene83440.t1 | MTR_1g055240 | 86.620 | 142 | 19 | 0 | 91 | 232 | 3 | 144 | 1.13e-84 | 266 |
| MS.gene83440.t1 | MTR_3g028680 | 81.646 | 158 | 26 | 1 | 618 | 772 | 1 | 158 | 2.97e-84 | 266 |
| MS.gene83440.t1 | MTR_0019s0290 | 80.263 | 152 | 30 | 0 | 82 | 233 | 9 | 160 | 2.27e-82 | 260 |
| MS.gene83440.t1 | MTR_2g067090 | 78.710 | 155 | 30 | 1 | 621 | 772 | 99 | 253 | 1.71e-75 | 247 |
| MS.gene83440.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 1.63e-65 | 219 |
| MS.gene83440.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 576 | 754 | 88 | 246 | 1.63e-65 | 219 |
| MS.gene83440.t1 | MTR_1281s0010 | 78.899 | 109 | 23 | 0 | 19 | 127 | 1 | 109 | 5.03e-55 | 185 |
| MS.gene83440.t1 | MTR_6g051425 | 32.500 | 320 | 181 | 7 | 40 | 341 | 22 | 324 | 5.68e-40 | 151 |
| MS.gene83440.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.36e-31 | 132 |
| MS.gene83440.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 2.50e-31 | 122 |
| MS.gene83440.t1 | MTR_2g067130 | 64.198 | 81 | 23 | 2 | 695 | 772 | 46 | 123 | 3.10e-22 | 94.4 |
| MS.gene83440.t1 | MTR_1g070355 | 27.273 | 253 | 161 | 4 | 41 | 291 | 80 | 311 | 3.42e-19 | 92.4 |
| MS.gene83440.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.67e-13 | 66.6 |
| MS.gene83440.t1 | MTR_4g035820 | 22.759 | 290 | 191 | 7 | 17 | 299 | 61 | 324 | 1.73e-13 | 74.7 |
| MS.gene83440.t1 | MTR_0402s0040 | 24.324 | 185 | 121 | 4 | 49 | 233 | 40 | 205 | 8.74e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83440.t1 | AT4G38180 | 27.201 | 636 | 393 | 12 | 32 | 665 | 70 | 637 | 1.16e-67 | 239 |
| MS.gene83440.t1 | AT4G15090 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 5.00e-59 | 216 |
| MS.gene83440.t1 | AT4G15090 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 5.00e-59 | 216 |
| MS.gene83440.t1 | AT4G15090 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 5.00e-59 | 216 |
| MS.gene83440.t1 | AT4G15090 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 5.00e-59 | 216 |
| MS.gene83440.t1 | AT4G15090 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 5.00e-59 | 216 |
| MS.gene83440.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 9.08e-53 | 197 |
| MS.gene83440.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 9.08e-53 | 197 |
| MS.gene83440.t1 | AT2G27110 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 2.58e-52 | 194 |
| MS.gene83440.t1 | AT3G06250 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.14e-51 | 193 |
| MS.gene83440.t1 | AT3G06250 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.14e-51 | 193 |
| MS.gene83440.t1 | AT3G06250 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.14e-51 | 193 |
| MS.gene83440.t1 | AT1G76320 | 24.077 | 677 | 418 | 17 | 50 | 720 | 12 | 598 | 7.30e-49 | 184 |
| MS.gene83440.t1 | AT1G76320 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 1.90e-48 | 183 |
| MS.gene83440.t1 | AT1G76320 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 1.99e-48 | 183 |
| MS.gene83440.t1 | AT1G76320 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 1.99e-48 | 183 |
| MS.gene83440.t1 | AT3G22170 | 22.207 | 725 | 457 | 15 | 34 | 753 | 69 | 691 | 2.64e-47 | 181 |
| MS.gene83440.t1 | AT3G22170 | 22.207 | 725 | 457 | 15 | 34 | 753 | 69 | 691 | 2.64e-47 | 181 |
| MS.gene83440.t1 | AT5G18960 | 24.186 | 645 | 365 | 19 | 24 | 661 | 200 | 727 | 5.51e-46 | 177 |
| MS.gene83440.t1 | AT5G18960 | 24.186 | 645 | 365 | 19 | 24 | 661 | 200 | 727 | 5.51e-46 | 177 |
| MS.gene83440.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 1.41e-43 | 166 |
| MS.gene83440.t1 | AT5G28530 | 24.570 | 639 | 385 | 19 | 40 | 660 | 60 | 619 | 1.23e-41 | 162 |
| MS.gene83440.t1 | AT1G10240 | 25.201 | 623 | 374 | 21 | 49 | 659 | 62 | 604 | 1.27e-41 | 162 |
| MS.gene83440.t1 | AT1G10240 | 25.201 | 623 | 374 | 21 | 49 | 659 | 62 | 604 | 1.27e-41 | 162 |
| MS.gene83440.t1 | AT5G28530 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 7.15e-41 | 160 |
| MS.gene83440.t1 | AT5G28530 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 7.15e-41 | 160 |
| MS.gene83440.t1 | AT2G32250 | 22.830 | 749 | 438 | 22 | 1 | 743 | 8 | 622 | 4.58e-40 | 159 |
| MS.gene83440.t1 | AT2G32250 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 7.87e-40 | 158 |
| MS.gene83440.t1 | AT2G32250 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 7.87e-40 | 158 |
| MS.gene83440.t1 | AT2G32250 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 8.30e-40 | 158 |
| MS.gene83440.t1 | AT2G32250 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 8.30e-40 | 158 |
| MS.gene83440.t1 | AT2G32250 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 8.30e-40 | 158 |
| MS.gene83440.t1 | AT2G32250 | 23.272 | 709 | 408 | 20 | 41 | 743 | 3 | 581 | 1.54e-39 | 157 |
| MS.gene83440.t1 | AT2G32250 | 23.413 | 709 | 407 | 21 | 41 | 743 | 3 | 581 | 2.32e-39 | 156 |
| MS.gene83440.t1 | AT1G80010 | 24.100 | 639 | 390 | 23 | 41 | 662 | 101 | 661 | 2.26e-36 | 147 |
| MS.gene83440.t1 | AT1G52520 | 23.381 | 633 | 389 | 20 | 41 | 662 | 91 | 638 | 3.42e-33 | 137 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 6.88e-28 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.99e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 6.88e-28 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.99e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 7.62e-28 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.11e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 41 | 440 | 7.92e-28 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.19e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 1.13e-27 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.06e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 1.13e-27 | 120 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.06e-12 | 71.2 |
| MS.gene83440.t1 | AT4G19990 | 28.358 | 268 | 185 | 3 | 219 | 483 | 106 | 369 | 2.60e-27 | 119 |
| MS.gene83440.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.81e-12 | 71.6 |
| MS.gene83440.t1 | AT5G28530 | 22.258 | 629 | 349 | 22 | 40 | 660 | 60 | 556 | 9.15e-23 | 104 |
Find 116 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 5.4:+17010022 | None:intergenic |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.4:-17011157 | MS.gene83440:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.4:-17010890 | MS.gene83440:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.4:-17011945 | MS.gene83440:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.4:-17011438 | MS.gene83440:intron |
| CATCGTAAGAATGTGTTATT+TGG | 0.207871 | 5.4:-17011405 | MS.gene83440:CDS |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 5.4:+17010028 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.4:-17011116 | MS.gene83440:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5.4:-17010176 | MS.gene83440:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.4:+17011293 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.4:+17011895 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5.4:-17010857 | MS.gene83440:CDS |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5.4:-17010593 | MS.gene83440:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.365071 | 5.4:+17012425 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.4:-17011016 | MS.gene83440:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5.4:-17010184 | MS.gene83440:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.4:-17011888 | MS.gene83440:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5.4:-17010848 | MS.gene83440:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.4:-17011896 | MS.gene83440:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.4:-17011017 | MS.gene83440:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5.4:+17010300 | None:intergenic |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5.4:+17010046 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5.4:-17010716 | MS.gene83440:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5.4:-17010151 | MS.gene83440:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5.4:+17012664 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.4:-17012654 | MS.gene83440:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5.4:-17010468 | MS.gene83440:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5.4:+17010545 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5.4:-17012583 | MS.gene83440:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5.4:+17010544 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.4:-17012248 | MS.gene83440:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.4:-17012366 | MS.gene83440:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.4:-17012334 | MS.gene83440:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.4:+17011300 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.4:-17012383 | MS.gene83440:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5.4:+17010367 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5.4:-17012500 | MS.gene83440:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.4:-17012218 | MS.gene83440:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.4:-17012729 | MS.gene83440:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.4:-17011226 | MS.gene83440:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.4:-17011062 | MS.gene83440:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5.4:-17010467 | MS.gene83440:CDS |
| ACAAAATAAGAAATCTGATA+AGG | 0.474392 | 5.4:-17012534 | MS.gene83440:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5.4:-17010510 | MS.gene83440:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5.4:+17010714 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.4:+17012389 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5.4:-17012596 | MS.gene83440:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5.4:-17010075 | MS.gene83440:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 5.4:-17012105 | MS.gene83440:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5.4:-17010700 | MS.gene83440:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.4:+17011425 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.4:-17011115 | MS.gene83440:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.4:-17012092 | MS.gene83440:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.4:-17010876 | MS.gene83440:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.4:+17010796 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.4:+17012000 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5.4:-17010076 | MS.gene83440:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.4:-17011029 | MS.gene83440:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5.4:-17010531 | MS.gene83440:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.4:+17012134 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.4:-17011011 | MS.gene83440:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5.4:+17010551 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.4:+17010908 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5.4:-17012330 | MS.gene83440:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 5.4:+17012290 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5.4:-17010530 | MS.gene83440:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5.4:+17010719 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5.4:-17012489 | MS.gene83440:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5.4:-17010511 | MS.gene83440:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.4:+17010913 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5.4:-17010699 | MS.gene83440:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5.4:-17012664 | MS.gene83440:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.4:-17012488 | MS.gene83440:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 5.4:-17012186 | MS.gene83440:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.4:+17011280 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5.4:-17010310 | MS.gene83440:CDS |
| GAACAAATTCAAGGAATGAG+TGG | 0.563779 | 5.4:+17009481 | None:intergenic |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.4:-17012038 | MS.gene83440:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5.4:-17012705 | MS.gene83440:CDS |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 5.4:-17012165 | MS.gene83440:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5.4:-17010224 | MS.gene83440:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.4:+17010795 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5.4:+17010064 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5.4:+17010774 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5.4:-17010183 | MS.gene83440:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.4:-17011294 | MS.gene83440:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5.4:-17010188 | MS.gene83440:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5.4:+17010108 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 5.4:-17010561 | MS.gene83440:CDS |
| TTGATATCGTTGTGCTTCAG+TGG | 0.601464 | 5.4:+17010276 | None:intergenic |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 5.4:-17012173 | MS.gene83440:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 5.4:-17012099 | MS.gene83440:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5.4:-17010221 | MS.gene83440:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.4:-17010798 | MS.gene83440:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5.4:-17010713 | MS.gene83440:CDS |
| AGAACTGGATTGTCACATGT+TGG | 0.608197 | 5.4:+17012440 | None:intergenic |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 5.4:-17012096 | MS.gene83440:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5.4:-17012740 | MS.gene83440:CDS |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 5.4:-17012170 | MS.gene83440:CDS |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.4:+17011060 | None:intergenic |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5.4:+17010546 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.4:-17011225 | MS.gene83440:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5.4:+17010303 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 5.4:-17012185 | MS.gene83440:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.4:-17010875 | MS.gene83440:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.4:-17012331 | MS.gene83440:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.4:+17010325 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5.4:+17010754 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 5.4:-17012179 | MS.gene83440:CDS |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5.4:-17010199 | MS.gene83440:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5.4:+17010449 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5.4:-17011298 | MS.gene83440:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5.4:-17010466 | MS.gene83440:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5.4:-17010615 | MS.gene83440:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5.4:-17010614 | MS.gene83440:CDS |
| GTCAATTCTGATGTAATGCG+CGG | 0.734639 | 5.4:-17009535 | MS.gene83440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACGTATTTATTATTATATTT+TGG | - | chr5.4:17012513-17012532 | MS.gene83440:CDS | 10.0% |
| !! | AAACCATAATTATAGTTTAA+TGG | + | chr5.4:17012589-17012608 | None:intergenic | 15.0% |
| !! | AAACCATTAAACTATAATTA+TGG | - | chr5.4:17012583-17012602 | MS.gene83440:CDS | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr5.4:17012342-17012361 | MS.gene83440:CDS | 15.0% |
| !! | ACAAAATAAGAAATCTGATA+AGG | - | chr5.4:17009704-17009723 | MS.gene83440:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5.4:17009904-17009923 | MS.gene83440:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5.4:17009642-17009661 | MS.gene83440:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5.4:17010525-17010544 | MS.gene83440:CDS | 20.0% |
| !!! | CTATACATTTTCACATTTTT+TGG | - | chr5.4:17012485-17012504 | MS.gene83440:CDS | 20.0% |
| !!! | CTTATTTTGTGAATTGTTAT+TGG | + | chr5.4:17009694-17009713 | None:intergenic | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5.4:17010497-17010516 | MS.gene83440:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5.4:17010989-17011008 | None:intergenic | 25.0% |
| ! | AAACCAAATTAACAGTCTAA+TGG | + | chr5.4:17012546-17012565 | None:intergenic | 25.0% |
| ! | AAACCATTAGACTGTTAATT+TGG | - | chr5.4:17012540-17012559 | MS.gene83440:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr5.4:17012440-17012459 | MS.gene83440:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5.4:17010342-17010361 | MS.gene83440:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5.4:17010368-17010387 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5.4:17009907-17009926 | MS.gene83440:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5.4:17011522-17011541 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5.4:17011348-17011367 | MS.gene83440:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5.4:17009533-17009552 | MS.gene83440:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5.4:17010415-17010434 | MS.gene83440:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5.4:17011487-17011506 | None:intergenic | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5.4:17009908-17009927 | MS.gene83440:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5.4:17011522-17011541 | MS.gene83440:intron | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5.4:17011081-17011100 | MS.gene83440:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5.4:17010517-17010536 | MS.gene83440:CDS | 25.0% |
| !! | ATTTTCAATTCTGAGTTAAG+TGG | - | chr5.4:17012616-17012635 | MS.gene83440:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5.4:17010777-17010796 | MS.gene83440:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr5.4:17012213-17012232 | None:intergenic | 25.0% |
| !! | TTGGTTTGAATATTATCTTC+TGG | - | chr5.4:17012459-17012478 | MS.gene83440:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5.4:17010255-17010274 | MS.gene83440:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5.4:17010256-17010275 | MS.gene83440:CDS | 25.0% |
| !!! | ATGATGAAAAACTGTTTTGA+TGG | - | chr5.4:17011151-17011170 | MS.gene83440:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5.4:17011623-17011642 | MS.gene83440:intron | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5.4:17010524-17010543 | MS.gene83440:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5.4:17010020-17010039 | MS.gene83440:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5.4:17011624-17011643 | MS.gene83440:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr5.4:17010588-17010607 | None:intergenic | 30.0% | |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr5.4:17009951-17009970 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5.4:17009750-17009769 | MS.gene83440:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5.4:17010350-17010369 | MS.gene83440:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5.4:17011122-17011141 | MS.gene83440:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5.4:17010053-17010072 | MS.gene83440:CDS | 30.0% | |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr5.4:17012355-17012374 | MS.gene83440:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5.4:17011123-17011142 | MS.gene83440:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5.4:17010816-17010835 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5.4:17011695-17011714 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5.4:17010293-17010312 | MS.gene83440:CDS | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr5.4:17009577-17009596 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5.4:17009574-17009593 | MS.gene83440:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5.4:17011527-17011546 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5.4:17010454-17010473 | MS.gene83440:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5.4:17011525-17011544 | MS.gene83440:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5.4:17011037-17011056 | MS.gene83440:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5.4:17011696-17011715 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5.4:17010346-17010365 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5.4:17009839-17009858 | MS.gene83440:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5.4:17009584-17009603 | MS.gene83440:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5.4:17011333-17011352 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5.4:17009749-17009768 | MS.gene83440:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5.4:17010221-17010240 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5.4:17011467-17011486 | None:intergenic | 30.0% | |
| TGTACAGAGCAAAAATTCTA+AGG | + | chr5.4:17010564-17010583 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5.4:17010107-17010126 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5.4:17010736-17010755 | MS.gene83440:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5.4:17009872-17009891 | MS.gene83440:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5.4:17011582-17011601 | MS.gene83440:intron | 30.0% |
| ! | CATCGTAAGAATGTGTTATT+TGG | - | chr5.4:17010833-17010852 | MS.gene83440:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5.4:17010097-17010116 | MS.gene83440:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr5.4:17012039-17012058 | MS.gene83440:CDS | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5.4:17010980-17010999 | MS.gene83440:CDS | 30.0% |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr5.4:17012373-17012392 | MS.gene83440:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5.4:17012195-17012214 | None:intergenic | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5.4:17011807-17011826 | MS.gene83440:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5.4:17011707-17011726 | MS.gene83440:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5.4:17010429-17010448 | MS.gene83440:CDS | 30.0% |
| !! | CAAAAATTCTAAGGCAAGAT+AGG | + | chr5.4:17010555-17010574 | None:intergenic | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr5.4:17012087-17012106 | MS.gene83440:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5.4:17011708-17011727 | MS.gene83440:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5.4:17011804-17011823 | MS.gene83440:intron | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5.4:17011872-17011891 | MS.gene83440:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5.4:17010992-17011011 | MS.gene83440:CDS | 30.0% |
| !!! | TGAAAAACTGTTTTGATGGA+AGG | - | chr5.4:17011155-17011174 | MS.gene83440:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5.4:17011362-17011381 | MS.gene83440:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5.4:17009655-17009674 | MS.gene83440:intron | 35.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr5.4:17009498-17009517 | MS.gene83440:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5.4:17011363-17011382 | MS.gene83440:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5.4:17009990-17010009 | MS.gene83440:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr5.4:17011697-17011716 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5.4:17009738-17009757 | MS.gene83440:intron | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5.4:17009838-17009857 | MS.gene83440:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr5.4:17011209-17011228 | MS.gene83440:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5.4:17009833-17009852 | MS.gene83440:intron | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5.4:17012293-17012312 | MS.gene83440:CDS | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | - | chr5.4:17012268-17012287 | MS.gene83440:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5.4:17010052-17010071 | MS.gene83440:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5.4:17009775-17009794 | MS.gene83440:intron | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5.4:17009816-17009835 | None:intergenic | 35.0% | |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr5.4:17012219-17012238 | None:intergenic | 35.0% |
| ! | GAGGCTTTAACAAATTAAGC+AGG | - | chr5.4:17012312-17012331 | MS.gene83440:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5.4:17011645-17011664 | MS.gene83440:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5.4:17011292-17011311 | MS.gene83440:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5.4:17010435-17010454 | MS.gene83440:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5.4:17011005-17011024 | MS.gene83440:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5.4:17012141-17012160 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5.4:17011874-17011893 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5.4:17011222-17011241 | MS.gene83440:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5.4:17011814-17011833 | MS.gene83440:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5.4:17010876-17010895 | MS.gene83440:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5.4:17011875-17011894 | MS.gene83440:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5.4:17011328-17011347 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5.4:17010686-17010705 | None:intergenic | 40.0% | |
| AGAACTGGATTGTCACATGT+TGG | + | chr5.4:17009801-17009820 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5.4:17009509-17009528 | MS.gene83440:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5.4:17011539-17011558 | MS.gene83440:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5.4:17011771-17011790 | MS.gene83440:intron | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr5.4:17012050-17012069 | MS.gene83440:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5.4:17011770-17011789 | MS.gene83440:intron | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr5.4:17011928-17011947 | MS.gene83440:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr5.4:17011916-17011935 | None:intergenic | 40.0% | |
| GTCAATTCTGATGTAATGCG+CGG | - | chr5.4:17012703-17012722 | MS.gene83440:CDS | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr5.4:17011941-17011960 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr5.4:17011538-17011557 | MS.gene83440:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5.4:17010940-17010959 | MS.gene83440:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5.4:17010682-17010701 | MS.gene83440:CDS | 40.0% | |
| TCTAATGACGACTCGTCAAA+AGG | - | chr5.4:17010133-17010152 | MS.gene83440:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5.4:17010941-17010960 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr5.4:17010800-17010819 | MS.gene83440:CDS | 40.0% | |
| TTGATATCGTTGTGCTTCAG+TGG | + | chr5.4:17011965-17011984 | None:intergenic | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr5.4:17011938-17011957 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5.4:17012281-17012300 | None:intergenic | 40.0% | |
| ! | ATTTTTGCTCTGTACAGCCA+TGG | - | chr5.4:17010568-17010587 | MS.gene83440:CDS | 40.0% |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr5.4:17011381-17011400 | MS.gene83440:CDS | 40.0% |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5.4:17012133-17012152 | None:intergenic | 40.0% |
| ! | TTTTGATGGAAGGCCTACTT+CGG | - | chr5.4:17011165-17011184 | MS.gene83440:CDS | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5.4:17011817-17011836 | MS.gene83440:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5.4:17011221-17011240 | MS.gene83440:CDS | 40.0% |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr5.4:17011661-17011680 | MS.gene83440:intron | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5.4:17009789-17009808 | None:intergenic | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr5.4:17011390-17011409 | MS.gene83440:CDS | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr5.4:17010059-17010078 | MS.gene83440:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5.4:17010263-17010282 | MS.gene83440:CDS | 40.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5.4:17010200-17010219 | MS.gene83440:CDS | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5.4:17011181-17011200 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5.4:17011440-17011459 | MS.gene83440:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5.4:17011792-17011811 | None:intergenic | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr5.4:17012163-17012182 | MS.gene83440:CDS | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5.4:17009843-17009862 | MS.gene83440:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5.4:17011690-17011709 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5.4:17011772-17011791 | MS.gene83440:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5.4:17010241-17010260 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5.4:17012062-17012081 | MS.gene83440:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5.4:17009852-17009871 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr5.4:17011677-17011696 | MS.gene83440:intron | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5.4:17011244-17011263 | MS.gene83440:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5.4:17011227-17011246 | MS.gene83440:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5.4:17009855-17009874 | MS.gene83440:intron | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5.4:17010948-17010967 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr5.4:17010944-17010963 | MS.gene83440:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr5.4:17011727-17011746 | MS.gene83440:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5.4:17011445-17011464 | None:intergenic | 50.0% | |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr5.4:17010139-17010158 | MS.gene83440:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr5.4:17010142-17010161 | MS.gene83440:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr5.4:17012162-17012181 | MS.gene83440:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5.4:17011176-17011195 | MS.gene83440:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr5.4:17011728-17011747 | MS.gene83440:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5.4:17011013-17011032 | MS.gene83440:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5.4:17012014-17012033 | MS.gene83440:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr5.4:17012055-17012074 | MS.gene83440:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5.4:17011012-17011031 | MS.gene83440:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5.4:17012177-17012196 | None:intergenic | 50.0% |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr5.4:17010065-17010084 | MS.gene83440:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5.4:17010961-17010980 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr5.4:17012054-17012073 | MS.gene83440:CDS | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5.4:17011446-17011465 | None:intergenic | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5.4:17012068-17012087 | MS.gene83440:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5.4:17010146-17010165 | MS.gene83440:CDS | 55.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr5.4:17010068-17010087 | MS.gene83440:CDS | 55.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5.4:17012017-17012036 | MS.gene83440:CDS | 60.0% | |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr5.4:17010073-17010092 | MS.gene83440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 17009489 | 17012771 | 17009489 | ID=MS.gene83440 |
| chr5.4 | mRNA | 17009489 | 17012771 | 17009489 | ID=MS.gene83440.t1;Parent=MS.gene83440 |
| chr5.4 | exon | 17011889 | 17012771 | 17011889 | ID=MS.gene83440.t1.exon1;Parent=MS.gene83440.t1 |
| chr5.4 | CDS | 17011889 | 17012771 | 17011889 | ID=cds.MS.gene83440.t1;Parent=MS.gene83440.t1 |
| chr5.4 | exon | 17010017 | 17011450 | 17010017 | ID=MS.gene83440.t1.exon2;Parent=MS.gene83440.t1 |
| chr5.4 | CDS | 17010017 | 17011450 | 17010017 | ID=cds.MS.gene83440.t1;Parent=MS.gene83440.t1 |
| chr5.4 | exon | 17009489 | 17009565 | 17009489 | ID=MS.gene83440.t1.exon3;Parent=MS.gene83440.t1 |
| chr5.4 | CDS | 17009489 | 17009565 | 17009489 | ID=cds.MS.gene83440.t1;Parent=MS.gene83440.t1 |
| Gene Sequence |
| Protein sequence |
