Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83484.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83484.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83484.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83484.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83484.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene83484.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene83484.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene83484.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene83484.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene83484.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene83484.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene83484.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene83484.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene83484.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene83484.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene83484.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene83484.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene83484.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene83484.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene83484.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene83484.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene83484.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene83484.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83484.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene83484.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene83484.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene83484.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene83484.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83484.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83484.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene83484.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene83484.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene83484.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene83484.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene83484.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene83484.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene83484.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene83484.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene83484.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene83484.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene83484.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene83484.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene83484.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene83484.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene83484.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene83484.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene83484.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:+22052442 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:+22050710 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:-22052604 | MS.gene83484:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:+22052985 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:-22052838 | MS.gene83484:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:+22052986 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:+22052922 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:+22052782 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:+22052746 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:+22052984 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:-22050541 | None:intergenic |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:+22052989 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:+22052987 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:-22050642 | MS.gene83484:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:+22050585 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:-22052568 | MS.gene83484:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:+22052755 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:+22052916 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:-22050717 | MS.gene83484:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:-22052755 | MS.gene83484:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:+22052943 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:+22052988 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:+22050578 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:-22050692 | MS.gene83484:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:-22052665 | MS.gene83484:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:-22050693 | MS.gene83484:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:-22052957 | MS.gene83484:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:-22050735 | MS.gene83484:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:+22050579 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:+22052451 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:+22052891 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:-22052583 | MS.gene83484:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:-22050612 | MS.gene83484:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:-22052442 | MS.gene83484:intron |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:-22050712 | MS.gene83484:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:+22052973 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:-22052962 | MS.gene83484:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:-22052807 | MS.gene83484:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:-22052550 | MS.gene83484:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:+22052455 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:-22052829 | MS.gene83484:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:+22052732 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:+22052576 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:+22052454 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:-22050669 | MS.gene83484:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:+22052758 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:-22052580 | MS.gene83484:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:+22052606 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:+22052773 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:-22050585 | MS.gene83484:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:-22052725 | MS.gene83484:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:-22052554 | MS.gene83484:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:+22052609 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:+22052469 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:-22052951 | MS.gene83484:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:-22052982 | MS.gene83484:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:-22052893 | MS.gene83484:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:-22052792 | MS.gene83484:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:-22052898 | MS.gene83484:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:-22052644 | MS.gene83484:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:-22052691 | MS.gene83484:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:+22052691 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:+22050596 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:+22052655 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:-22052559 | MS.gene83484:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:-22050670 | MS.gene83484:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:-22052948 | MS.gene83484:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:+22052776 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:-22050558 | MS.gene83484:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:+22050541 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:-22050668 | MS.gene83484:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATATTTTTAAAAAAA+GGG | - | chr7.3:22052208-22052227 | MS.gene83484:intron | 0.0% |
| !!! | TTTATAATATTTTTAAAAAA+AGG | - | chr7.3:22052207-22052226 | MS.gene83484:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | + | chr7.3:22052065-22052084 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | + | chr7.3:22052064-22052083 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | + | chr7.3:22052359-22052378 | None:intergenic | 10.0% |
| !!! | ATAATATTTTTAAAAAAAGG+GGG | - | chr7.3:22052210-22052229 | MS.gene83484:intron | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | - | chr7.3:22052799-22052818 | MS.gene83484:CDS | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | - | chr7.3:22052456-22052475 | MS.gene83484:CDS | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | + | chr7.3:22052358-22052377 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | + | chr7.3:22051254-22051273 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | - | chr7.3:22051820-22051839 | MS.gene83484:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | - | chr7.3:22051172-22051191 | MS.gene83484:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | - | chr7.3:22052365-22052384 | MS.gene83484:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | + | chr7.3:22051363-22051382 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | - | chr7.3:22052810-22052829 | MS.gene83484:CDS | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | + | chr7.3:22052265-22052284 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | + | chr7.3:22051992-22052011 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | + | chr7.3:22051709-22051728 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | + | chr7.3:22051357-22051376 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | + | chr7.3:22051676-22051695 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | - | chr7.3:22051503-22051522 | MS.gene83484:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | - | chr7.3:22052162-22052181 | MS.gene83484:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | + | chr7.3:22051536-22051555 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | + | chr7.3:22050695-22050714 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | + | chr7.3:22052155-22052174 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | + | chr7.3:22052262-22052281 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | + | chr7.3:22051204-22051223 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | + | chr7.3:22050694-22050713 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | - | chr7.3:22050716-22050735 | MS.gene83484:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | + | chr7.3:22050951-22050970 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | - | chr7.3:22051834-22051853 | MS.gene83484:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | + | chr7.3:22052332-22052351 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | - | chr7.3:22051474-22051493 | MS.gene83484:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | + | chr7.3:22052333-22052352 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | + | chr7.3:22052144-22052163 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | - | chr7.3:22050950-22050969 | MS.gene83484:intron | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | - | chr7.3:22051031-22051050 | MS.gene83484:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | + | chr7.3:22051810-22051829 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | - | chr7.3:22052668-22052687 | MS.gene83484:CDS | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | + | chr7.3:22050693-22050712 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | - | chr7.3:22051639-22051658 | MS.gene83484:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | + | chr7.3:22051988-22052007 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | + | chr7.3:22052519-22052538 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | + | chr7.3:22050948-22050967 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | + | chr7.3:22051745-22051764 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | + | chr7.3:22052663-22052682 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | + | chr7.3:22051106-22051125 | None:intergenic | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | + | chr7.3:22052135-22052154 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | - | chr7.3:22052819-22052838 | MS.gene83484:CDS | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | - | chr7.3:22052538-22052557 | MS.gene83484:CDS | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | - | chr7.3:22052774-22052793 | MS.gene83484:CDS | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | - | chr7.3:22052546-22052565 | MS.gene83484:CDS | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | - | chr7.3:22052515-22052534 | MS.gene83484:CDS | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | - | chr7.3:22051742-22051761 | MS.gene83484:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | - | chr7.3:22051030-22051049 | MS.gene83484:intron | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | + | chr7.3:22051338-22051357 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | + | chr7.3:22050641-22050660 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | + | chr7.3:22051696-22051715 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | - | chr7.3:22052595-22052614 | MS.gene83484:CDS | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | + | chr7.3:22051806-22051825 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | + | chr7.3:22050692-22050711 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | + | chr7.3:22050635-22050654 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | - | chr7.3:22052667-22052686 | MS.gene83484:CDS | 30.0% |
| !!! | TTCGAAGTTTTTTTTCGATC+AGG | - | chr7.3:22052414-22052433 | MS.gene83484:intron | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | + | chr7.3:22052978-22052997 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | - | chr7.3:22050889-22050908 | MS.gene83484:intron | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | - | chr7.3:22052885-22052904 | MS.gene83484:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | + | chr7.3:22052560-22052579 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | + | chr7.3:22050825-22050844 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | + | chr7.3:22051115-22051134 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | - | chr7.3:22051112-22051131 | MS.gene83484:intron | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | - | chr7.3:22052912-22052931 | MS.gene83484:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | - | chr7.3:22051846-22051865 | MS.gene83484:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | - | chr7.3:22052884-22052903 | MS.gene83484:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | - | chr7.3:22051841-22051860 | MS.gene83484:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | - | chr7.3:22052682-22052701 | MS.gene83484:CDS | 35.0% | |
| TAGAACATCACCATACACAT+TGG | + | chr7.3:22052787-22052806 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | + | chr7.3:22052383-22052402 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | + | chr7.3:22052545-22052564 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | - | chr7.3:22051119-22051138 | MS.gene83484:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | + | chr7.3:22051584-22051603 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | + | chr7.3:22051102-22051121 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | - | chr7.3:22050829-22050848 | MS.gene83484:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | - | chr7.3:22051845-22051864 | MS.gene83484:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | - | chr7.3:22051924-22051943 | MS.gene83484:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | + | chr7.3:22052847-22052866 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | - | chr7.3:22052842-22052861 | MS.gene83484:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | - | chr7.3:22052862-22052881 | MS.gene83484:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | + | chr7.3:22051912-22051931 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | + | chr7.3:22051103-22051122 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | - | chr7.3:22052861-22052880 | MS.gene83484:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | - | chr7.3:22051948-22051967 | MS.gene83484:intron | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | + | chr7.3:22051946-22051965 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | + | chr7.3:22050902-22050921 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | - | chr7.3:22051040-22051059 | MS.gene83484:intron | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | + | chr7.3:22052912-22052931 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | + | chr7.3:22050925-22050944 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | - | chr7.3:22051861-22051880 | MS.gene83484:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | + | chr7.3:22052979-22052998 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | - | chr7.3:22051862-22051881 | MS.gene83484:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | - | chr7.3:22052942-22052961 | MS.gene83484:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | - | chr7.3:22052480-22052499 | MS.gene83484:CDS | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | - | chr7.3:22052886-22052905 | MS.gene83484:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | + | chr7.3:22050588-22050607 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | - | chr7.3:22051580-22051599 | MS.gene83484:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | - | chr7.3:22052837-22052856 | MS.gene83484:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | + | chr7.3:22052241-22052260 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | - | chr7.3:22050603-22050622 | MS.gene83484:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | - | chr7.3:22050572-22050591 | MS.gene83484:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | + | chr7.3:22050981-22051000 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | + | chr7.3:22051896-22051915 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | + | chr7.3:22050921-22050940 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | - | chr7.3:22052969-22052988 | MS.gene83484:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | + | chr7.3:22052972-22052991 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | - | chr7.3:22050863-22050882 | MS.gene83484:intron | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | - | chr7.3:22050725-22050744 | MS.gene83484:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | - | chr7.3:22050656-22050675 | MS.gene83484:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | + | chr7.3:22050926-22050945 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | - | chr7.3:22050995-22051014 | MS.gene83484:intron | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | - | chr7.3:22050971-22050990 | MS.gene83484:intron | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | - | chr7.3:22050747-22050766 | MS.gene83484:intron | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | - | chr7.3:22051000-22051019 | MS.gene83484:intron | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | - | chr7.3:22050974-22050993 | MS.gene83484:intron | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | - | chr7.3:22050592-22050611 | MS.gene83484:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | - | chr7.3:22052996-22053015 | MS.gene83484:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | - | chr7.3:22050917-22050936 | MS.gene83484:intron | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | + | chr7.3:22050589-22050608 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | + | chr7.3:22051192-22051211 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | - | chr7.3:22050986-22051005 | MS.gene83484:intron | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | - | chr7.3:22050920-22050939 | MS.gene83484:intron | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | + | chr7.3:22050573-22050592 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | + | chr7.3:22050866-22050885 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | + | chr7.3:22050600-22050619 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | + | chr7.3:22050572-22050591 | None:intergenic | 45.0% |
| !!! | TATAATATTTTTAAAAAAAG+GGG | - | chr7.3:22052209-22052228 | MS.gene83484:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | - | chr7.3:22051004-22051023 | MS.gene83484:intron | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | + | chr7.3:22050666-22050685 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | - | chr7.3:22050597-22050616 | MS.gene83484:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | + | chr7.3:22051970-22051989 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | + | chr7.3:22050930-22050949 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | - | chr7.3:22050910-22050929 | MS.gene83484:intron | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | - | chr7.3:22050661-22050680 | MS.gene83484:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | + | chr7.3:22050584-22050603 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | + | chr7.3:22051088-22051107 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | + | chr7.3:22050571-22050590 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | - | chr7.3:22050762-22050781 | MS.gene83484:intron | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | + | chr7.3:22050570-22050589 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | - | chr7.3:22050606-22050625 | MS.gene83484:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | + | chr7.3:22050614-22050633 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | + | chr7.3:22050775-22050794 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | + | chr7.3:22050569-22050588 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | + | chr7.3:22050811-22050830 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | + | chr7.3:22050802-22050821 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | + | chr7.3:22052961-22052980 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | + | chr7.3:22050568-22050587 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | - | chr7.3:22050799-22050818 | MS.gene83484:intron | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | + | chr7.3:22050799-22050818 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | + | chr7.3:22050784-22050803 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | + | chr7.3:22050781-22050800 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22050542 | 22053034 | 22050542 | ID=MS.gene83484 |
| chr7.3 | mRNA | 22050542 | 22053034 | 22050542 | ID=MS.gene83484.t1;Parent=MS.gene83484 |
| chr7.3 | exon | 22052443 | 22053034 | 22052443 | ID=MS.gene83484.t1.exon1;Parent=MS.gene83484.t1 |
| chr7.3 | CDS | 22052443 | 22053034 | 22052443 | ID=cds.MS.gene83484.t1;Parent=MS.gene83484.t1 |
| chr7.3 | exon | 22050542 | 22050744 | 22050542 | ID=MS.gene83484.t1.exon2;Parent=MS.gene83484.t1 |
| chr7.3 | CDS | 22050542 | 22050744 | 22050542 | ID=cds.MS.gene83484.t1;Parent=MS.gene83484.t1 |
| Gene Sequence |
| Protein sequence |
