Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83485.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83485.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83485.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83485.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83485.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene83485.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene83485.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene83485.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene83485.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene83485.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene83485.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene83485.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene83485.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene83485.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene83485.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene83485.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene83485.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene83485.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene83485.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene83485.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene83485.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene83485.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene83485.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83485.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene83485.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene83485.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene83485.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene83485.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83485.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83485.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene83485.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene83485.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene83485.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene83485.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene83485.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene83485.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene83485.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene83485.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene83485.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene83485.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene83485.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene83485.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene83485.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene83485.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene83485.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene83485.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene83485.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:+22027813 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:+22026087 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:-22027975 | MS.gene83485:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:+22028356 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:-22028209 | MS.gene83485:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:+22028357 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:+22028293 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:+22028153 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:+22028117 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:+22028355 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:-22025918 | None:intergenic |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:+22028360 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:+22028358 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:-22026019 | MS.gene83485:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:+22025962 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:-22027939 | MS.gene83485:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:+22028126 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:+22028287 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:-22026094 | MS.gene83485:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:-22028126 | MS.gene83485:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:+22028314 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:+22028359 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:+22025955 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:-22026069 | MS.gene83485:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:-22028036 | MS.gene83485:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:-22026070 | MS.gene83485:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:-22028328 | MS.gene83485:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:-22026112 | MS.gene83485:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:+22025956 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:+22027822 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:+22028262 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:-22027954 | MS.gene83485:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:-22025989 | MS.gene83485:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:-22027813 | MS.gene83485:intron |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:-22026089 | MS.gene83485:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:+22028344 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:-22028333 | MS.gene83485:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:-22028178 | MS.gene83485:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:-22027921 | MS.gene83485:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:+22027826 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:-22028200 | MS.gene83485:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:+22028103 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:+22027947 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:+22027825 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:-22026046 | MS.gene83485:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:+22028129 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:-22027951 | MS.gene83485:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:+22027977 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:+22028144 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:-22025962 | MS.gene83485:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:-22028096 | MS.gene83485:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:-22027925 | MS.gene83485:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:+22027980 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:+22027840 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:-22028322 | MS.gene83485:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:-22028353 | MS.gene83485:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:-22028264 | MS.gene83485:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:-22028163 | MS.gene83485:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:-22028269 | MS.gene83485:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:-22028015 | MS.gene83485:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:-22028062 | MS.gene83485:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:+22028062 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:+22025973 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:+22028026 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:-22027930 | MS.gene83485:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:-22026047 | MS.gene83485:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:-22028319 | MS.gene83485:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:+22028147 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:-22025935 | MS.gene83485:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:+22025918 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:-22026045 | MS.gene83485:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTTAAAAAAAA+GGG | - | chr7.3:22027585-22027604 | MS.gene83485:intron | 0.0% |
| !!! | TTATAATATTTTTAAAAAAA+AGG | - | chr7.3:22027584-22027603 | MS.gene83485:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | + | chr7.3:22027441-22027460 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | + | chr7.3:22027440-22027459 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | + | chr7.3:22027736-22027755 | None:intergenic | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | - | chr7.3:22028170-22028189 | MS.gene83485:CDS | 10.0% |
| !!! | TAATATTTTTAAAAAAAAGG+GGG | - | chr7.3:22027587-22027606 | MS.gene83485:intron | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | - | chr7.3:22027827-22027846 | MS.gene83485:CDS | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | + | chr7.3:22027735-22027754 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | + | chr7.3:22026631-22026650 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | - | chr7.3:22027196-22027215 | MS.gene83485:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | - | chr7.3:22026549-22026568 | MS.gene83485:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | - | chr7.3:22027742-22027761 | MS.gene83485:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | + | chr7.3:22026740-22026759 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | - | chr7.3:22028181-22028200 | MS.gene83485:CDS | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | + | chr7.3:22027642-22027661 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | + | chr7.3:22027368-22027387 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | + | chr7.3:22027086-22027105 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | + | chr7.3:22026734-22026753 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | + | chr7.3:22027053-22027072 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | - | chr7.3:22026880-22026899 | MS.gene83485:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | - | chr7.3:22027538-22027557 | MS.gene83485:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | + | chr7.3:22026913-22026932 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | + | chr7.3:22026072-22026091 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | + | chr7.3:22027531-22027550 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | + | chr7.3:22027639-22027658 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | + | chr7.3:22026581-22026600 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | + | chr7.3:22026071-22026090 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | - | chr7.3:22026093-22026112 | MS.gene83485:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | + | chr7.3:22026328-22026347 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | - | chr7.3:22027210-22027229 | MS.gene83485:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | + | chr7.3:22027709-22027728 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | - | chr7.3:22026851-22026870 | MS.gene83485:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | + | chr7.3:22027710-22027729 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | + | chr7.3:22027520-22027539 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | - | chr7.3:22026327-22026346 | MS.gene83485:intron | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | - | chr7.3:22026408-22026427 | MS.gene83485:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | + | chr7.3:22027186-22027205 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | - | chr7.3:22028039-22028058 | MS.gene83485:CDS | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | + | chr7.3:22026070-22026089 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | - | chr7.3:22027016-22027035 | MS.gene83485:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | + | chr7.3:22027364-22027383 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | + | chr7.3:22027890-22027909 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | + | chr7.3:22026325-22026344 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | + | chr7.3:22027122-22027141 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | + | chr7.3:22028034-22028053 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | + | chr7.3:22026483-22026502 | None:intergenic | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | + | chr7.3:22027511-22027530 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | - | chr7.3:22028190-22028209 | MS.gene83485:CDS | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | - | chr7.3:22027909-22027928 | MS.gene83485:CDS | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | - | chr7.3:22028145-22028164 | MS.gene83485:CDS | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | - | chr7.3:22027917-22027936 | MS.gene83485:CDS | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | - | chr7.3:22027886-22027905 | MS.gene83485:CDS | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | - | chr7.3:22027119-22027138 | MS.gene83485:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | - | chr7.3:22026407-22026426 | MS.gene83485:intron | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | + | chr7.3:22026715-22026734 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | + | chr7.3:22026018-22026037 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | + | chr7.3:22027073-22027092 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | - | chr7.3:22027966-22027985 | MS.gene83485:CDS | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | + | chr7.3:22027182-22027201 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | + | chr7.3:22026069-22026088 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | + | chr7.3:22026012-22026031 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | - | chr7.3:22028038-22028057 | MS.gene83485:CDS | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | + | chr7.3:22028349-22028368 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | - | chr7.3:22026266-22026285 | MS.gene83485:intron | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | - | chr7.3:22028256-22028275 | MS.gene83485:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | + | chr7.3:22027931-22027950 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | + | chr7.3:22026202-22026221 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | + | chr7.3:22026492-22026511 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | - | chr7.3:22026489-22026508 | MS.gene83485:intron | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | - | chr7.3:22028283-22028302 | MS.gene83485:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | - | chr7.3:22027222-22027241 | MS.gene83485:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | - | chr7.3:22028255-22028274 | MS.gene83485:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | - | chr7.3:22027217-22027236 | MS.gene83485:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | - | chr7.3:22028053-22028072 | MS.gene83485:CDS | 35.0% | |
| TAGAACATCACCATACACAT+TGG | + | chr7.3:22028158-22028177 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | + | chr7.3:22027760-22027779 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | + | chr7.3:22027916-22027935 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | - | chr7.3:22026496-22026515 | MS.gene83485:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | + | chr7.3:22026961-22026980 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | + | chr7.3:22026479-22026498 | None:intergenic | 35.0% | |
| TGATAATTCGAAGTTCGATC+AGG | - | chr7.3:22027785-22027804 | MS.gene83485:intron | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | - | chr7.3:22026206-22026225 | MS.gene83485:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | - | chr7.3:22027221-22027240 | MS.gene83485:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | - | chr7.3:22027300-22027319 | MS.gene83485:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | + | chr7.3:22028218-22028237 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | - | chr7.3:22028213-22028232 | MS.gene83485:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | - | chr7.3:22028233-22028252 | MS.gene83485:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | + | chr7.3:22027288-22027307 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | + | chr7.3:22026480-22026499 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | - | chr7.3:22028232-22028251 | MS.gene83485:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | - | chr7.3:22027324-22027343 | MS.gene83485:intron | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | + | chr7.3:22027322-22027341 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | + | chr7.3:22026279-22026298 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | - | chr7.3:22026417-22026436 | MS.gene83485:intron | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | + | chr7.3:22028283-22028302 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | + | chr7.3:22026302-22026321 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | - | chr7.3:22027237-22027256 | MS.gene83485:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | + | chr7.3:22028350-22028369 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | - | chr7.3:22027238-22027257 | MS.gene83485:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | - | chr7.3:22028313-22028332 | MS.gene83485:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | - | chr7.3:22027851-22027870 | MS.gene83485:CDS | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | - | chr7.3:22028257-22028276 | MS.gene83485:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | + | chr7.3:22025965-22025984 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | - | chr7.3:22026957-22026976 | MS.gene83485:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | - | chr7.3:22028208-22028227 | MS.gene83485:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | + | chr7.3:22027618-22027637 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | - | chr7.3:22025980-22025999 | MS.gene83485:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | - | chr7.3:22025949-22025968 | MS.gene83485:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | + | chr7.3:22026358-22026377 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | + | chr7.3:22027272-22027291 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | + | chr7.3:22026298-22026317 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | - | chr7.3:22028340-22028359 | MS.gene83485:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | + | chr7.3:22028343-22028362 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | - | chr7.3:22026240-22026259 | MS.gene83485:intron | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | - | chr7.3:22026102-22026121 | MS.gene83485:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | - | chr7.3:22026033-22026052 | MS.gene83485:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | + | chr7.3:22026303-22026322 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | - | chr7.3:22026372-22026391 | MS.gene83485:intron | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | - | chr7.3:22026348-22026367 | MS.gene83485:intron | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | - | chr7.3:22026124-22026143 | MS.gene83485:intron | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | - | chr7.3:22026377-22026396 | MS.gene83485:intron | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | - | chr7.3:22026351-22026370 | MS.gene83485:intron | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | - | chr7.3:22025969-22025988 | MS.gene83485:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | - | chr7.3:22028367-22028386 | MS.gene83485:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | - | chr7.3:22026294-22026313 | MS.gene83485:intron | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | + | chr7.3:22025966-22025985 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | + | chr7.3:22026569-22026588 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | - | chr7.3:22026363-22026382 | MS.gene83485:intron | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | - | chr7.3:22026297-22026316 | MS.gene83485:intron | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | + | chr7.3:22025950-22025969 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | + | chr7.3:22026243-22026262 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | + | chr7.3:22025977-22025996 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | + | chr7.3:22025949-22025968 | None:intergenic | 45.0% |
| !!! | ATAATATTTTTAAAAAAAAG+GGG | - | chr7.3:22027586-22027605 | MS.gene83485:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | - | chr7.3:22026381-22026400 | MS.gene83485:intron | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | + | chr7.3:22026043-22026062 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | - | chr7.3:22025974-22025993 | MS.gene83485:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | + | chr7.3:22027346-22027365 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | + | chr7.3:22026307-22026326 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | - | chr7.3:22026287-22026306 | MS.gene83485:intron | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | - | chr7.3:22026038-22026057 | MS.gene83485:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | + | chr7.3:22025961-22025980 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | + | chr7.3:22026465-22026484 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | + | chr7.3:22025948-22025967 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | - | chr7.3:22026139-22026158 | MS.gene83485:intron | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | + | chr7.3:22025947-22025966 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | - | chr7.3:22025983-22026002 | MS.gene83485:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | + | chr7.3:22025991-22026010 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | + | chr7.3:22026152-22026171 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | + | chr7.3:22025946-22025965 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | + | chr7.3:22026188-22026207 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | + | chr7.3:22026179-22026198 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | + | chr7.3:22028332-22028351 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | + | chr7.3:22025945-22025964 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | - | chr7.3:22026176-22026195 | MS.gene83485:intron | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | + | chr7.3:22026176-22026195 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | + | chr7.3:22026161-22026180 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | + | chr7.3:22026158-22026177 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22025919 | 22028405 | 22025919 | ID=MS.gene83485 |
| chr7.3 | mRNA | 22025919 | 22028405 | 22025919 | ID=MS.gene83485.t1;Parent=MS.gene83485 |
| chr7.3 | exon | 22027814 | 22028405 | 22027814 | ID=MS.gene83485.t1.exon1;Parent=MS.gene83485.t1 |
| chr7.3 | CDS | 22027814 | 22028405 | 22027814 | ID=cds.MS.gene83485.t1;Parent=MS.gene83485.t1 |
| chr7.3 | exon | 22025919 | 22026121 | 22025919 | ID=MS.gene83485.t1.exon2;Parent=MS.gene83485.t1 |
| chr7.3 | CDS | 22025919 | 22026121 | 22025919 | ID=cds.MS.gene83485.t1;Parent=MS.gene83485.t1 |
| Gene Sequence |
| Protein sequence |
