Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83486.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83486.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83486.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83486.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83486.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene83486.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene83486.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene83486.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene83486.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene83486.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene83486.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene83486.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene83486.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene83486.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene83486.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene83486.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene83486.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene83486.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene83486.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene83486.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene83486.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene83486.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene83486.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83486.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene83486.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene83486.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene83486.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene83486.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83486.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene83486.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene83486.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene83486.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene83486.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene83486.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene83486.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene83486.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene83486.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene83486.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene83486.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene83486.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene83486.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene83486.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene83486.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene83486.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene83486.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene83486.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene83486.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:-21995834 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:-21997557 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:+21995672 | MS.gene83486:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:-21995291 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:+21995438 | MS.gene83486:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:-21995290 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:-21995354 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:-21995494 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:-21995530 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:-21995292 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:+21997726 | MS.gene83486:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:-21995287 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:-21995289 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:+21997625 | MS.gene83486:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:-21997682 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:+21995708 | MS.gene83486:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:-21995521 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:-21995360 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:+21997550 | MS.gene83486:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:+21995521 | MS.gene83486:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:-21995333 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:-21995288 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:-21997689 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:+21997575 | MS.gene83486:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:+21995611 | MS.gene83486:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:+21997574 | MS.gene83486:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:+21995319 | MS.gene83486:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:+21997532 | MS.gene83486:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:-21997688 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:-21995825 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:-21995385 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:+21995693 | MS.gene83486:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:+21997655 | MS.gene83486:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:+21995834 | MS.gene83486:CDS |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:+21997555 | MS.gene83486:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:-21995303 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:+21995314 | MS.gene83486:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:+21995469 | MS.gene83486:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:+21995726 | MS.gene83486:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:-21995821 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:+21995447 | MS.gene83486:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:-21995544 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:-21995700 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:-21995822 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:+21997598 | MS.gene83486:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:-21995518 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:+21995696 | MS.gene83486:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:-21995670 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:-21995503 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:+21997682 | MS.gene83486:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:+21995551 | MS.gene83486:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:+21995722 | MS.gene83486:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:-21995667 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:-21995807 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:+21995325 | MS.gene83486:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:+21995294 | MS.gene83486:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:+21995383 | MS.gene83486:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:+21995484 | MS.gene83486:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:+21995378 | MS.gene83486:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:+21995632 | MS.gene83486:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:+21995585 | MS.gene83486:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:-21995585 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:-21997671 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:-21995621 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:+21995717 | MS.gene83486:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:+21997597 | MS.gene83486:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:+21995328 | MS.gene83486:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:-21995500 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:+21997709 | MS.gene83486:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:-21997726 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:+21997599 | MS.gene83486:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATATTTTTAAAAAAA+GGG | + | chr7.3:21996927-21996946 | MS.gene83486:intron | 0.0% |
| !!! | TTTATAATATTTTTAAAAAA+AGG | + | chr7.3:21996926-21996945 | MS.gene83486:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | - | chr7.3:21996784-21996803 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | - | chr7.3:21996783-21996802 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | - | chr7.3:21997078-21997097 | None:intergenic | 10.0% |
| !!! | ATAATATTTTTAAAAAAAGG+GGG | + | chr7.3:21996929-21996948 | MS.gene83486:intron | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | + | chr7.3:21997512-21997531 | MS.gene83486:intron | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | + | chr7.3:21997169-21997188 | MS.gene83486:intron | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | - | chr7.3:21997077-21997096 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7.3:21995976-21995995 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7.3:21996540-21996559 | MS.gene83486:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | + | chr7.3:21995894-21995913 | MS.gene83486:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | + | chr7.3:21997084-21997103 | MS.gene83486:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | - | chr7.3:21996084-21996103 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | + | chr7.3:21997523-21997542 | MS.gene83486:intron | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7.3:21996984-21997003 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | - | chr7.3:21996711-21996730 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | - | chr7.3:21996430-21996449 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | - | chr7.3:21996078-21996097 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | - | chr7.3:21996397-21996416 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | + | chr7.3:21996224-21996243 | MS.gene83486:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | + | chr7.3:21996881-21996900 | MS.gene83486:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | - | chr7.3:21996257-21996276 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7.3:21995417-21995436 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | - | chr7.3:21996874-21996893 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7.3:21996981-21997000 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | - | chr7.3:21995926-21995945 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7.3:21995416-21995435 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7.3:21995438-21995457 | MS.gene83486:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7.3:21995673-21995692 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7.3:21996554-21996573 | MS.gene83486:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | - | chr7.3:21997051-21997070 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | + | chr7.3:21996195-21996214 | MS.gene83486:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | - | chr7.3:21997052-21997071 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | - | chr7.3:21996863-21996882 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7.3:21995672-21995691 | MS.gene83486:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7.3:21995753-21995772 | MS.gene83486:CDS | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7.3:21996530-21996549 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | + | chr7.3:21997381-21997400 | MS.gene83486:intron | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7.3:21995415-21995434 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | + | chr7.3:21996360-21996379 | MS.gene83486:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | - | chr7.3:21996707-21996726 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | - | chr7.3:21997232-21997251 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7.3:21995670-21995689 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | - | chr7.3:21996466-21996485 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | - | chr7.3:21997376-21997395 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7.3:21995828-21995847 | None:intergenic | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | - | chr7.3:21996854-21996873 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | + | chr7.3:21997532-21997551 | MS.gene83486:intron | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | + | chr7.3:21997251-21997270 | MS.gene83486:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7.3:21997487-21997506 | MS.gene83486:intron | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | + | chr7.3:21997259-21997278 | MS.gene83486:intron | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | + | chr7.3:21997228-21997247 | MS.gene83486:intron | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | + | chr7.3:21996463-21996482 | MS.gene83486:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7.3:21995752-21995771 | MS.gene83486:CDS | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | - | chr7.3:21996059-21996078 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7.3:21995363-21995382 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | - | chr7.3:21996417-21996436 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7.3:21997308-21997327 | MS.gene83486:intron | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | - | chr7.3:21996526-21996545 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7.3:21995414-21995433 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7.3:21995357-21995376 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | + | chr7.3:21997380-21997399 | MS.gene83486:intron | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | - | chr7.3:21997691-21997710 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7.3:21995611-21995630 | MS.gene83486:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | + | chr7.3:21997598-21997617 | MS.gene83486:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | - | chr7.3:21997273-21997292 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7.3:21995547-21995566 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7.3:21995837-21995856 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7.3:21995834-21995853 | MS.gene83486:CDS | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | + | chr7.3:21997625-21997644 | MS.gene83486:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7.3:21996566-21996585 | MS.gene83486:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | + | chr7.3:21997597-21997616 | MS.gene83486:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7.3:21996561-21996580 | MS.gene83486:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | + | chr7.3:21997395-21997414 | MS.gene83486:intron | 35.0% | |
| TAGAACATCACCATACACAT+TGG | - | chr7.3:21997500-21997519 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | - | chr7.3:21997102-21997121 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | - | chr7.3:21997258-21997277 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7.3:21995841-21995860 | MS.gene83486:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | - | chr7.3:21996305-21996324 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7.3:21995824-21995843 | None:intergenic | 35.0% | |
| TGATAATTCGAAGTTCGATC+AGG | + | chr7.3:21997127-21997146 | MS.gene83486:intron | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7.3:21995551-21995570 | MS.gene83486:CDS | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7.3:21996565-21996584 | MS.gene83486:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7.3:21996644-21996663 | MS.gene83486:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | - | chr7.3:21997560-21997579 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | + | chr7.3:21997555-21997574 | MS.gene83486:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7.3:21997575-21997594 | MS.gene83486:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7.3:21996632-21996651 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7.3:21995825-21995844 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7.3:21997574-21997593 | MS.gene83486:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7.3:21996667-21996686 | MS.gene83486:intron | 35.0% |
| ! | AAAGTAGCGTTCATGTTTTC+CGG | - | chr7.3:21996666-21996685 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7.3:21995624-21995643 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7.3:21995762-21995781 | MS.gene83486:CDS | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | - | chr7.3:21997625-21997644 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7.3:21995647-21995666 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7.3:21996581-21996600 | MS.gene83486:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | - | chr7.3:21997692-21997711 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7.3:21996582-21996601 | MS.gene83486:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7.3:21997655-21997674 | MS.gene83486:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | + | chr7.3:21997193-21997212 | MS.gene83486:intron | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | + | chr7.3:21997599-21997618 | MS.gene83486:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7.3:21995310-21995329 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | + | chr7.3:21996301-21996320 | MS.gene83486:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | + | chr7.3:21997550-21997569 | MS.gene83486:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | - | chr7.3:21996960-21996979 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7.3:21995325-21995344 | MS.gene83486:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | + | chr7.3:21995294-21995313 | MS.gene83486:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7.3:21995703-21995722 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7.3:21996616-21996635 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7.3:21995643-21995662 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | + | chr7.3:21997682-21997701 | MS.gene83486:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | - | chr7.3:21997685-21997704 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7.3:21995585-21995604 | MS.gene83486:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7.3:21995447-21995466 | MS.gene83486:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7.3:21995378-21995397 | MS.gene83486:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | - | chr7.3:21995648-21995667 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7.3:21995717-21995736 | MS.gene83486:CDS | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7.3:21995693-21995712 | MS.gene83486:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7.3:21995469-21995488 | MS.gene83486:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7.3:21995722-21995741 | MS.gene83486:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7.3:21995696-21995715 | MS.gene83486:CDS | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7.3:21995314-21995333 | MS.gene83486:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | + | chr7.3:21997709-21997728 | MS.gene83486:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7.3:21995639-21995658 | MS.gene83486:CDS | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7.3:21995311-21995330 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | - | chr7.3:21995914-21995933 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7.3:21995708-21995727 | MS.gene83486:CDS | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7.3:21995642-21995661 | MS.gene83486:CDS | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7.3:21995295-21995314 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7.3:21995588-21995607 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7.3:21995322-21995341 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7.3:21995294-21995313 | None:intergenic | 45.0% |
| !!! | TATAATATTTTTAAAAAAAG+GGG | + | chr7.3:21996928-21996947 | MS.gene83486:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7.3:21995726-21995745 | MS.gene83486:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7.3:21995388-21995407 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7.3:21995319-21995338 | MS.gene83486:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7.3:21996689-21996708 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7.3:21995652-21995671 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7.3:21995632-21995651 | MS.gene83486:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7.3:21995383-21995402 | MS.gene83486:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7.3:21995306-21995325 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7.3:21995810-21995829 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7.3:21995293-21995312 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7.3:21995484-21995503 | MS.gene83486:CDS | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7.3:21995292-21995311 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7.3:21995328-21995347 | MS.gene83486:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7.3:21995336-21995355 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7.3:21995497-21995516 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7.3:21995291-21995310 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7.3:21995533-21995552 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7.3:21995524-21995543 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | - | chr7.3:21997674-21997693 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7.3:21995290-21995309 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7.3:21995521-21995540 | MS.gene83486:CDS | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7.3:21995521-21995540 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7.3:21995506-21995525 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7.3:21995503-21995522 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 21995264 | 21997747 | 21995264 | ID=MS.gene83486 |
| chr7.3 | mRNA | 21995264 | 21997747 | 21995264 | ID=MS.gene83486.t1;Parent=MS.gene83486 |
| chr7.3 | exon | 21995264 | 21995855 | 21995264 | ID=MS.gene83486.t1.exon1;Parent=MS.gene83486.t1 |
| chr7.3 | CDS | 21995264 | 21995855 | 21995264 | ID=cds.MS.gene83486.t1;Parent=MS.gene83486.t1 |
| chr7.3 | exon | 21997545 | 21997747 | 21997545 | ID=MS.gene83486.t1.exon2;Parent=MS.gene83486.t1 |
| chr7.3 | CDS | 21997545 | 21997747 | 21997545 | ID=cds.MS.gene83486.t1;Parent=MS.gene83486.t1 |
| Gene Sequence |
| Protein sequence |
