AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83573

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83573.t1 MTR_2g104590 73.401 297 9 5 1 293 2 232 1.56e-143 403
MS.gene83573.t1 MTR_8g069740 73.333 270 66 3 1 266 1 268 1.73e-135 384
MS.gene83573.t1 MTR_2g104650 67.905 296 71 5 1 292 1 276 3.13e-121 348
MS.gene83573.t1 MTR_2g104550 42.308 286 140 8 13 282 33 309 8.41e-58 188
MS.gene83573.t1 MTR_4g009540 39.414 307 146 10 14 282 24 328 3.35e-53 176
MS.gene83573.t1 MTR_2g104490 41.115 287 138 9 13 282 33 305 5.97e-51 170
MS.gene83573.t1 MTR_8g009020 42.735 234 116 4 65 280 85 318 1.60e-49 167
MS.gene83573.t1 MTR_2g104620 50.667 225 50 6 1 221 1 168 9.74e-49 160
MS.gene83573.t1 MTR_4g009110 41.250 240 112 6 65 282 115 347 2.78e-47 162
MS.gene83573.t1 MTR_5g014520 47.059 187 95 3 99 283 144 328 8.39e-46 157
MS.gene83573.t1 MTR_2g104500 39.781 274 140 8 13 280 13 267 2.03e-45 155
MS.gene83573.t1 MTR_8g009010 36.610 295 121 9 13 280 12 267 1.09e-44 154
MS.gene83573.t1 MTR_4g009540 37.716 289 140 10 14 264 24 310 1.87e-44 153
MS.gene83573.t1 MTR_2g104490 37.970 266 140 7 13 264 33 287 3.89e-43 149
MS.gene83573.t1 MTR_5g014600 43.878 196 94 5 103 282 137 332 2.30e-42 148
MS.gene83573.t1 MTR_5g014560 39.623 212 111 5 86 283 94 302 4.12e-42 147
MS.gene83573.t1 MTR_2g104560 43.434 198 86 6 96 280 36 220 1.01e-41 144
MS.gene83573.t1 MTR_2g104530 45.175 228 110 8 64 280 46 269 1.55e-41 145
MS.gene83573.t1 MTR_0246s0020 39.303 201 115 3 90 283 173 373 4.92e-40 144
MS.gene83573.t1 MTR_4g067010 32.534 292 173 8 10 282 28 314 5.19e-39 139
MS.gene83573.t1 MTR_4g097940 40.541 185 92 5 107 282 148 323 5.95e-39 139
MS.gene83573.t1 MTR_2g010450 43.182 176 93 4 110 280 173 346 1.49e-38 139
MS.gene83573.t1 MTR_7g080780 38.934 244 135 5 39 280 80 311 2.73e-38 137
MS.gene83573.t1 MTR_7g080780 38.934 244 135 5 39 280 93 324 3.50e-38 137
MS.gene83573.t1 MTR_4g066460 43.407 182 98 4 103 282 144 322 5.05e-38 137
MS.gene83573.t1 MTR_5g014640 38.660 194 110 3 97 286 137 325 2.17e-37 135
MS.gene83573.t1 MTR_4g092700 40.704 199 112 3 92 284 132 330 1.65e-36 133
MS.gene83573.t1 MTR_0011s0210 41.279 172 93 3 114 280 183 351 4.03e-36 132
MS.gene83573.t1 MTR_0250s0040 38.503 187 105 4 103 283 77 259 8.08e-36 129
MS.gene83573.t1 MTR_4g066380 34.323 303 161 8 10 283 27 320 2.10e-35 130
MS.gene83573.t1 MTR_4g097920 38.378 185 96 5 107 282 133 308 8.77e-35 128
MS.gene83573.t1 MTR_4g097920 38.378 185 96 5 107 282 148 323 1.22e-34 128
MS.gene83573.t1 MTR_0011s0260 39.535 172 96 3 114 280 183 351 3.58e-34 127
MS.gene83573.t1 MTR_4g097950 40.838 191 103 4 100 281 57 246 2.10e-33 123
MS.gene83573.t1 MTR_6g047570 39.000 200 113 5 90 283 134 330 9.06e-33 123
MS.gene83573.t1 MTR_0246s0020 38.043 184 107 3 90 266 173 356 3.68e-32 122
MS.gene83573.t1 MTR_4g098035 32.911 237 144 7 51 283 111 336 3.74e-29 114
MS.gene83573.t1 MTR_0246s0050 32.911 237 144 7 51 283 90 315 3.76e-29 113
MS.gene83573.t1 MTR_4g009510 40.230 174 88 6 117 286 45 206 4.83e-28 107
MS.gene83573.t1 MTR_4g009420 39.412 170 84 4 118 286 47 198 9.47e-28 106
MS.gene83573.t1 MTR_7g451650 36.047 172 92 5 118 286 42 198 4.00e-25 99.8
MS.gene83573.t1 MTR_7g050350 37.671 146 77 4 144 286 2 136 1.02e-21 89.0
MS.gene83573.t1 MTR_7g451650 37.671 146 77 4 144 286 2 136 1.02e-21 89.0
MS.gene83573.t1 MTR_4g009420 38.158 152 75 4 118 268 47 180 2.50e-20 87.0
MS.gene83573.t1 MTR_5g014550 37.600 125 72 3 143 263 53 175 1.52e-18 82.0
MS.gene83573.t1 MTR_7g451650 36.364 154 80 6 118 268 42 180 5.36e-18 80.5
MS.gene83573.t1 MTR_6g047550 43.956 91 50 1 90 179 148 238 8.14e-15 73.2
MS.gene83573.t1 MTR_8g064700 24.336 226 136 8 65 261 179 398 7.33e-12 65.9
MS.gene83573.t1 MTR_5g030430 25.478 157 100 4 111 250 490 646 1.60e-11 65.1
MS.gene83573.t1 MTR_7g117670 23.256 172 119 2 111 279 399 560 5.32e-11 63.5
MS.gene83573.t1 MTR_3g030700 27.545 167 111 4 104 263 189 352 6.28e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83573.t1 AT4G37850 42.784 194 104 3 93 280 129 321 7.72e-40 142
MS.gene83573.t1 AT4G37850 42.784 194 104 3 93 280 129 321 7.72e-40 142
MS.gene83573.t1 AT2G22750 47.222 180 89 2 106 279 118 297 3.00e-38 137
MS.gene83573.t1 AT2G22750 47.222 180 89 2 106 279 146 325 4.29e-38 137
MS.gene83573.t1 AT2G22750 47.222 180 89 2 106 279 142 321 5.29e-38 137
MS.gene83573.t1 AT2G22750 47.222 180 88 3 106 279 118 296 1.08e-36 133
MS.gene83573.t1 AT2G22750 47.222 180 88 3 106 279 146 324 1.32e-36 133
MS.gene83573.t1 AT2G22760 31.982 222 141 5 69 282 74 293 6.18e-30 115
MS.gene83573.t1 AT2G22770 36.559 186 101 3 114 282 132 317 2.33e-28 111
MS.gene83573.t1 AT2G22760 31.527 203 130 4 69 264 74 274 3.07e-25 102
MS.gene83573.t1 AT4G29930 25.123 203 132 5 72 267 11 200 8.32e-16 75.5
MS.gene83573.t1 AT4G29930 25.500 200 129 5 72 264 11 197 9.06e-16 75.5
MS.gene83573.t1 AT4G29930 24.887 221 139 6 72 267 11 229 1.94e-15 74.7
MS.gene83573.t1 AT4G29930 25.229 218 136 6 72 264 11 226 2.37e-15 74.7
MS.gene83573.t1 AT4G29930 25.229 218 136 6 72 264 11 226 2.37e-15 74.7
MS.gene83573.t1 AT4G29930 25.743 202 135 5 72 267 11 203 3.38e-15 73.6
MS.gene83573.t1 AT4G09820 33.557 149 76 4 102 249 351 477 3.57e-15 75.9
MS.gene83573.t1 AT5G46760 28.947 152 94 4 111 250 412 561 7.88e-15 75.1
MS.gene83573.t1 AT4G17880 27.907 215 103 8 69 250 363 558 1.28e-14 74.3
MS.gene83573.t1 AT5G57150 23.529 204 144 4 72 264 12 214 6.37e-14 70.1
MS.gene83573.t1 AT5G57150 23.188 207 147 4 72 267 12 217 1.63e-13 69.3
MS.gene83573.t1 AT1G32640 27.160 162 95 4 104 250 442 595 3.17e-13 70.1
MS.gene83573.t1 AT1G63650 27.632 152 89 2 111 242 402 552 1.35e-12 68.2
MS.gene83573.t1 AT1G63650 27.632 152 89 2 111 242 402 552 1.35e-12 68.2
MS.gene83573.t1 AT1G63650 27.632 152 89 2 111 242 402 552 1.35e-12 68.2
MS.gene83573.t1 AT5G57150 23.316 193 136 4 84 265 25 216 1.77e-12 65.9
MS.gene83573.t1 AT5G57150 23.316 193 136 4 84 265 25 216 2.94e-12 65.5
MS.gene83573.t1 AT5G57150 23.148 216 154 4 72 276 13 227 3.10e-12 65.9
MS.gene83573.t1 AT5G41315 28.846 156 87 4 111 242 443 598 7.87e-12 65.9
MS.gene83573.t1 AT5G41315 28.846 156 87 4 111 242 438 593 8.21e-12 65.9
MS.gene83573.t1 AT5G41315 28.846 156 87 4 111 242 446 601 8.64e-12 65.9
MS.gene83573.t1 AT2G46510 29.661 118 66 3 104 221 385 485 2.19e-11 64.7

Find 55 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTGAAGTGAGGGTTCT+AGG 0.256835 2.2:-1067460 MS.gene83573:CDS
ACTAGGCCAGTTGTGAAAAT+AGG 0.274393 2.2:+1068115 None:intergenic
TGGCACTGTCATTGTAATTA+AGG 0.295958 2.2:+1067533 None:intergenic
CAAGACATTGGTAGTTGTTA+TGG 0.303801 2.2:+1067351 None:intergenic
ACTACCAATGTCTTGCCATT+TGG 0.326554 2.2:-1067343 MS.gene83573:CDS
AGTATATAAGTTGTTGGAAT+TGG 0.349233 2.2:+1068022 None:intergenic
AAGAGTAGTGGCTACGTTGC+AGG 0.356620 2.2:-1067079 MS.gene83573:CDS
ATTACTTGCCTGAGCAATAA+TGG 0.372110 2.2:+1067303 None:intergenic
ACATAATAACAGAGAGGAAC+AGG 0.423437 2.2:-1067865 MS.gene83573:CDS
CTCTTCATCAAATATGTTGT+TGG 0.428970 2.2:+1068186 None:intergenic
TAAGACAGTATATAAGTTGT+TGG 0.436008 2.2:+1068016 None:intergenic
CTAGGCCAGTTGTGAAAATA+GGG 0.436339 2.2:+1068116 None:intergenic
ATGAACACTAAAGAATGTTA+TGG 0.445823 2.2:-1067502 MS.gene83573:CDS
AGCTTGAAGTGAGGGTTCTA+GGG 0.452434 2.2:-1067459 MS.gene83573:CDS
TCTGATTCATGATATCTTTG+AGG 0.462411 2.2:+1068161 None:intergenic
ATTTATACCTGGATTGAAGA+AGG 0.472752 2.2:-1067804 MS.gene83573:intron
TAACATCACCATTATTGCTC+AGG 0.473971 2.2:-1067311 MS.gene83573:intron
TCTTCTTTGAATTCGACCCT+TGG 0.481461 2.2:+1067915 None:intergenic
AGAACCCTCACTTCAAGCTC+TGG 0.495246 2.2:+1067463 None:intergenic
GAAGAAGACATCAAGAAGAA+AGG 0.507699 2.2:-1067580 MS.gene83573:CDS
GACATCAAGAAGAAAGGTGC+AGG 0.512048 2.2:-1067574 MS.gene83573:CDS
TTTGCCTTTGTCATCATCAA+AGG 0.512672 2.2:-1067945 MS.gene83573:CDS
TGTTGAATGAGAGACATTGA+TGG 0.516688 2.2:+1068078 None:intergenic
GATTCGCTGTGGGAAGCAAA+AGG 0.520238 2.2:-1067419 MS.gene83573:CDS
AGACTAACCTTCTTCAATCC+AGG 0.524279 2.2:+1067797 None:intergenic
ATTTCCAGAGCTTGAAGTGA+GGG 0.525230 2.2:-1067467 MS.gene83573:CDS
ATGACAAAGGCAAAGAATCA+TGG 0.529186 2.2:+1067954 None:intergenic
ATGTTAAGAGTGTTTCCAAA+TGG 0.530024 2.2:+1067328 None:intergenic
GAACTTTCAGCATTTATACC+TGG 0.532111 2.2:-1067815 MS.gene83573:CDS
TTTAGTGTTCATTTCACCCA+TGG 0.540015 2.2:+1067513 None:intergenic
AGTTGTGAAAATAGGGACAC+TGG 0.546854 2.2:+1068123 None:intergenic
ACGGACAAGGTTCATGTACT+AGG 0.549231 2.2:-1067652 MS.gene83573:CDS
TGGACGAGTTGTTGTTGACT+AGG 0.551791 2.2:+1068098 None:intergenic
TGTTGGAATTGGTAATGAGC+TGG 0.555632 2.2:+1068033 None:intergenic
GAATCATGGTGTTGTTCAGT+TGG 0.556807 2.2:+1067968 None:intergenic
AATTACAATGACAGTGCCAT+GGG 0.574092 2.2:-1067529 MS.gene83573:CDS
AGTTGGTGGTAACAATGTAG+TGG 0.574871 2.2:+1067985 None:intergenic
GTTTCCAAATGGCAAGACAT+TGG 0.577033 2.2:+1067339 None:intergenic
TGAAGTGAGGGTTCTAGGGA+AGG 0.581565 2.2:-1067455 MS.gene83573:CDS
TAATTACAATGACAGTGCCA+TGG 0.581993 2.2:-1067530 MS.gene83573:CDS
GGGACACTGGGTTGATCTTG+TGG 0.587098 2.2:+1068136 None:intergenic
CATTTCCAGAGCTTGAAGTG+AGG 0.591406 2.2:-1067468 MS.gene83573:CDS
TCATCAAAGGCTAACAACCA+AGG 0.608148 2.2:-1067932 MS.gene83573:CDS
TCATGGTGTTGTTCAGTTGG+TGG 0.611030 2.2:+1067971 None:intergenic
TTAGCCTTTGATGATGACAA+AGG 0.628673 2.2:+1067941 None:intergenic
AATGGCTGTGTAGACGGACA+AGG 0.629049 2.2:-1067665 MS.gene83573:intron
TGTTAATCAAGATTCGCTGT+GGG 0.635001 2.2:-1067429 MS.gene83573:CDS
GTTGTGAAAATAGGGACACT+GGG 0.635399 2.2:+1068124 None:intergenic
CATCAAAGGCTAACAACCAA+GGG 0.638491 2.2:-1067931 MS.gene83573:CDS
GTGTTAATCAAGATTCGCTG+TGG 0.639073 2.2:-1067430 MS.gene83573:CDS
TAAATACAAGTTGACCGTGA+AGG 0.646419 2.2:-1067118 MS.gene83573:CDS
TGGGAAGCAAAAGGAAATTG+TGG 0.650519 2.2:-1067410 MS.gene83573:CDS
GCTCTGGAAATGTTTCATTG+TGG 0.678911 2.2:+1067479 None:intergenic
AGGAGAAGCTGTCAAGTACG+TGG 0.701643 2.2:-1067632 MS.gene83573:CDS
TAGATCACATAATAACAGAG+AGG 0.731708 2.2:-1067871 MS.gene83573:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTAAGAAAGGAAT+TGG + chr2.2:1067518-1067537 None:intergenic 15.0%
!! CTATAAAATGACTTATCTAA+TGG - chr2.2:1067581-1067600 MS.gene83573:CDS 20.0%
!! GAAACTTACATTGTAATATA+TGG + chr2.2:1068083-1068102 None:intergenic 20.0%
!! TCCAGAAAAAAAATTAAGAA+AGG + chr2.2:1067524-1067543 None:intergenic 20.0%
!!! ACTTTTATAGTAGTTATCAT+TGG - chr2.2:1067551-1067570 MS.gene83573:CDS 20.0%
!!! TCCTTTCTTAATTTTTTTTC+TGG - chr2.2:1067520-1067539 MS.gene83573:CDS 20.0%
!!! TGAATTGTTTTTCTTTTTTG+TGG + chr2.2:1067989-1068008 None:intergenic 20.0%
! AGTATATAAGTTGTTGGAAT+TGG + chr2.2:1067245-1067264 None:intergenic 25.0%
! ATGAACACTAAAGAATGTTA+TGG - chr2.2:1067762-1067781 MS.gene83573:intron 25.0%
! TAAGACAGTATATAAGTTGT+TGG + chr2.2:1067251-1067270 None:intergenic 25.0%
!! TTGTAATTGATTCTACAGAT+GGG - chr2.2:1068120-1068139 MS.gene83573:CDS 25.0%
!! TTTGTAATTGATTCTACAGA+TGG - chr2.2:1068119-1068138 MS.gene83573:CDS 25.0%
AGTGAAAAAACTAAGAGTAG+TGG - chr2.2:1068173-1068192 MS.gene83573:CDS 30.0%
ATTTATACCTGGATTGAAGA+AGG - chr2.2:1067460-1067479 MS.gene83573:CDS 30.0%
CTCTTCATCAAATATGTTGT+TGG + chr2.2:1067081-1067100 None:intergenic 30.0%
GATAAGAATCAAACTTGAGT+TGG + chr2.2:1068037-1068056 None:intergenic 30.0%
TAGATCACATAATAACAGAG+AGG - chr2.2:1067393-1067412 MS.gene83573:CDS 30.0%
TCTGATTCATGATATCTTTG+AGG + chr2.2:1067106-1067125 None:intergenic 30.0%
!! ATGTTAAGAGTGTTTCCAAA+TGG + chr2.2:1067939-1067958 None:intergenic 30.0%
!!! TTTTTTCACTAGATCCTTCA+CGG + chr2.2:1068163-1068182 None:intergenic 30.0%
AATTACAATGACAGTGCCAT+GGG - chr2.2:1067735-1067754 MS.gene83573:intron 35.0%
ACATAATAACAGAGAGGAAC+AGG - chr2.2:1067399-1067418 MS.gene83573:CDS 35.0%
ATGACAAAGGCAAAGAATCA+TGG + chr2.2:1067313-1067332 None:intergenic 35.0%
ATTACTTGCCTGAGCAATAA+TGG + chr2.2:1067964-1067983 None:intergenic 35.0%
GAACTTTCAGCATTTATACC+TGG - chr2.2:1067449-1067468 MS.gene83573:CDS 35.0%
GAAGAAGACATCAAGAAGAA+AGG - chr2.2:1067684-1067703 MS.gene83573:intron 35.0%
TAACATCACCATTATTGCTC+AGG - chr2.2:1067953-1067972 MS.gene83573:CDS 35.0%
TAATTACAATGACAGTGCCA+TGG - chr2.2:1067734-1067753 MS.gene83573:intron 35.0%
TGGCACTGTCATTGTAATTA+AGG + chr2.2:1067734-1067753 None:intergenic 35.0%
TGTTAATCAAGATTCGCTGT+GGG - chr2.2:1067835-1067854 MS.gene83573:CDS 35.0%
TGTTGAATGAGAGACATTGA+TGG + chr2.2:1067189-1067208 None:intergenic 35.0%
TTATCTAATGGCTGTGTAGA+CGG - chr2.2:1067593-1067612 MS.gene83573:CDS 35.0%
TTTAGTGTTCATTTCACCCA+TGG + chr2.2:1067754-1067773 None:intergenic 35.0%
TTTGCCTTTGTCATCATCAA+AGG - chr2.2:1067319-1067338 MS.gene83573:CDS 35.0%
! AGGAATTGGTTCACATATCT+AGG + chr2.2:1067504-1067523 None:intergenic 35.0%
! CAAGACATTGGTAGTTGTTA+TGG + chr2.2:1067916-1067935 None:intergenic 35.0%
! TAAATACAAGTTGACCGTGA+AGG - chr2.2:1068146-1068165 MS.gene83573:CDS 35.0%
!! TTAGCCTTTGATGATGACAA+AGG + chr2.2:1067326-1067345 None:intergenic 35.0%
ACTACCAATGTCTTGCCATT+TGG - chr2.2:1067921-1067940 MS.gene83573:CDS 40.0%
ACTAGGCCAGTTGTGAAAAT+AGG + chr2.2:1067152-1067171 None:intergenic 40.0%
AGACTAACCTTCTTCAATCC+AGG + chr2.2:1067470-1067489 None:intergenic 40.0%
AGTTGTGAAAATAGGGACAC+TGG + chr2.2:1067144-1067163 None:intergenic 40.0%
ATTTCCAGAGCTTGAAGTGA+GGG - chr2.2:1067797-1067816 MS.gene83573:intron 40.0%
CATCAAAGGCTAACAACCAA+GGG - chr2.2:1067333-1067352 MS.gene83573:CDS 40.0%
CTAGGCCAGTTGTGAAAATA+GGG + chr2.2:1067151-1067170 None:intergenic 40.0%
GTGTTAATCAAGATTCGCTG+TGG - chr2.2:1067834-1067853 MS.gene83573:CDS 40.0%
GTTGTGAAAATAGGGACACT+GGG + chr2.2:1067143-1067162 None:intergenic 40.0%
GTTTCCAAATGGCAAGACAT+TGG + chr2.2:1067928-1067947 None:intergenic 40.0%
TCATCAAAGGCTAACAACCA+AGG - chr2.2:1067332-1067351 MS.gene83573:CDS 40.0%
TCTTCTTTGAATTCGACCCT+TGG + chr2.2:1067352-1067371 None:intergenic 40.0%
TGGGAAGCAAAAGGAAATTG+TGG - chr2.2:1067854-1067873 MS.gene83573:CDS 40.0%
! AGTGTCCCTATTTTCACAAC+TGG - chr2.2:1067143-1067162 MS.gene83573:intron 40.0%
!! AGTTGGTGGTAACAATGTAG+TGG + chr2.2:1067282-1067301 None:intergenic 40.0%
!! GAATCATGGTGTTGTTCAGT+TGG + chr2.2:1067299-1067318 None:intergenic 40.0%
!! GCTCTGGAAATGTTTCATTG+TGG + chr2.2:1067788-1067807 None:intergenic 40.0%
!! TGTTGGAATTGGTAATGAGC+TGG + chr2.2:1067234-1067253 None:intergenic 40.0%
ACGGACAAGGTTCATGTACT+AGG - chr2.2:1067612-1067631 MS.gene83573:CDS 45.0%
AGCTTGAAGTGAGGGTTCTA+GGG - chr2.2:1067805-1067824 MS.gene83573:CDS 45.0%
CATTTCCAGAGCTTGAAGTG+AGG - chr2.2:1067796-1067815 MS.gene83573:intron 45.0%
! GACATCAAGAAGAAAGGTGC+AGG - chr2.2:1067690-1067709 MS.gene83573:intron 45.0%
! TGGACGAGTTGTTGTTGACT+AGG + chr2.2:1067169-1067188 None:intergenic 45.0%
!! TCATGGTGTTGTTCAGTTGG+TGG + chr2.2:1067296-1067315 None:intergenic 45.0%
!! TATATTATAGTAATTAAATT+TGG + chr2.2:1068059-1068078 None:intergenic 5.0%
AAGAGTAGTGGCTACGTTGC+AGG - chr2.2:1068185-1068204 MS.gene83573:CDS 50.0%
AATGGCTGTGTAGACGGACA+AGG - chr2.2:1067599-1067618 MS.gene83573:CDS 50.0%
AGAACCCTCACTTCAAGCTC+TGG + chr2.2:1067804-1067823 None:intergenic 50.0%
AGGAGAAGCTGTCAAGTACG+TGG - chr2.2:1067632-1067651 MS.gene83573:CDS 50.0%
GAGCTTGAAGTGAGGGTTCT+AGG - chr2.2:1067804-1067823 MS.gene83573:intron 50.0%
GATTCGCTGTGGGAAGCAAA+AGG - chr2.2:1067845-1067864 MS.gene83573:CDS 50.0%
!! TGAAGTGAGGGTTCTAGGGA+AGG - chr2.2:1067809-1067828 MS.gene83573:CDS 50.0%
!! GGGACACTGGGTTGATCTTG+TGG + chr2.2:1067131-1067150 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1067056 1068230 1067056 ID=MS.gene83573
chr2.2 mRNA 1067056 1068230 1067056 ID=MS.gene83573.t1;Parent=MS.gene83573
chr2.2 exon 1067805 1068230 1067805 ID=MS.gene83573.t1.exon1;Parent=MS.gene83573.t1
chr2.2 CDS 1067805 1068230 1067805 ID=cds.MS.gene83573.t1;Parent=MS.gene83573.t1
chr2.2 exon 1067312 1067674 1067312 ID=MS.gene83573.t1.exon2;Parent=MS.gene83573.t1
chr2.2 CDS 1067312 1067674 1067312 ID=cds.MS.gene83573.t1;Parent=MS.gene83573.t1
chr2.2 exon 1067056 1067148 1067056 ID=MS.gene83573.t1.exon3;Parent=MS.gene83573.t1
chr2.2 CDS 1067056 1067148 1067056 ID=cds.MS.gene83573.t1;Parent=MS.gene83573.t1
Gene Sequence

>MS.gene83573

ATGGAAGAATGTTTAAGTCACACCAACAACATATTTGATGAAGAGTTCCTCAAAGATATCATGAATCAGACACCACAAGATCAACCCAGTGTCCCTATTTTCACAACTGGCCTAGTCAACAACAACTCGTCCATCAATGTCTCTCATTCAACACAACATGCTGCAGAAAAGTTAACCAGCTCATTACCAATTCCAACAACTTATATACTGTCTTATGACAAATCCACTACATTGTTACCACCAACTGAACAACACCATGATTCTTTGCCTTTGTCATCATCAAAGGCTAACAACCAAGGGTCGAATTCAAAGAAGACTCGAAGCGCTTCTGAGACGCTAGATCACATAATAACAGAGAGGAACAGGAGACGCGAACTTACAAGAAAGTTCATAGAACTTTCAGCATTTATACCTGGATTGAAGAAGGTTAGTCTGTAATCTCATACCTAGATATGTGAACCAATTCCTTTCTTAATTTTTTTTCTGGACAATTCAACTTTTATAGTAGTTATCATTGGATAGAAGCTATAAAATGACTTATCTAATGGCTGTGTAGACGGACAAGGTTCATGTACTAGGAGAAGCTGTCAAGTACGTGGCACAACTTCAAGAACGTGTGAAAGAGCTAGAAGAAGACATCAAGAAGAAAGGTGCAGGATCATTGATATCTCATCTCCTTAATTACAATGACAGTGCCATGGGTGAAATGAACACTAAAGAATGTTATGGCCACAATGAAACATTTCCAGAGCTTGAAGTGAGGGTTCTAGGGAAGGAAGTGTTAATCAAGATTCGCTGTGGGAAGCAAAAGGAAATTGTGGTCAATATAATGTTGCAGCTTCAAATTCTTCATCTCTCCATAACAACTACCAATGTCTTGCCATTTGGAAACACTCTTAACATCACCATTATTGCTCAGGCAAGTAATTACCACAAAAAAGAAAAACAATTCATTGAAGAAAATTAACAAGCATGATTCCAACTCAAGTTTGATTCTTATCCAAATTTAATTACTATAATATAACCATATATTACAATGTAAGTTTCTATTTGTGTCTAAATTTTTGTAATTGATTCTACAGATGGGTGATAAATACAAGTTGACCGTGAAGGATCTAGTGAAAAAACTAAGAGTAGTGGCTACGTTGCAGGCATGTGATGATGTGCAACAATGA
Protein sequence

>MS.gene83573.t1

MEECLSHTNNIFDEEFLKDIMNQTPQDQPSVPIFTTGLVNNNSSINVSHSTQHAAEKLTSSLPIPTTYILSYDKSTTLLPPTEQHHDSLPLSSSKANNQGSNSKKTRSASETLDHIITERNRRRELTRKFIELSAFIPGLKKTDKVHVLGEAVKYVAQLQERVKELEEDIKKKGAGSLISHLLNYNDSAMGEMNTKECYGHNETFPELEVRVLGKEVLIKIRCGKQKEIVVNIMLQLQILHLSITTTNVLPFGNTLNITIIAQMGDKYKLTVKDLVKKLRVVATLQACDDVQQ