Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83574.t1 | XP_003597984.2 | 85.2 | 257 | 33 | 2 | 1 | 255 | 1 | 254 | 1.80E-106 | 395.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83574.t1 | Q9T072 | 37.7 | 207 | 123 | 4 | 47 | 248 | 99 | 304 | 1.7e-25 | 117.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83574.t1 | G7IMC5 | 85.2 | 257 | 33 | 2 | 1 | 255 | 1 | 254 | 1.3e-106 | 395.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene83574.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83574.t1 | MTR_8g069740 | 79.401 | 267 | 38 | 2 | 1 | 250 | 1 | 267 | 1.31e-147 | 413 |
MS.gene83574.t1 | MTR_2g104650 | 85.214 | 257 | 33 | 2 | 1 | 255 | 1 | 254 | 2.99e-145 | 407 |
MS.gene83574.t1 | MTR_2g104590 | 61.089 | 257 | 49 | 5 | 1 | 255 | 2 | 209 | 5.55e-93 | 273 |
MS.gene83574.t1 | MTR_2g104620 | 55.238 | 210 | 50 | 4 | 1 | 207 | 1 | 169 | 8.91e-55 | 174 |
MS.gene83574.t1 | MTR_8g009020 | 48.315 | 178 | 83 | 4 | 86 | 255 | 132 | 308 | 2.52e-42 | 147 |
MS.gene83574.t1 | MTR_2g104550 | 38.328 | 287 | 138 | 9 | 1 | 256 | 20 | 298 | 1.97e-41 | 144 |
MS.gene83574.t1 | MTR_2g104490 | 37.818 | 275 | 140 | 9 | 4 | 253 | 23 | 291 | 3.63e-41 | 144 |
MS.gene83574.t1 | MTR_2g104490 | 37.226 | 274 | 141 | 9 | 4 | 252 | 23 | 290 | 4.60e-40 | 140 |
MS.gene83574.t1 | MTR_4g009540 | 40.385 | 208 | 113 | 4 | 59 | 255 | 109 | 316 | 6.80e-38 | 135 |
MS.gene83574.t1 | MTR_5g014520 | 43.429 | 175 | 95 | 3 | 82 | 255 | 144 | 315 | 1.45e-37 | 135 |
MS.gene83574.t1 | MTR_4g009540 | 40.796 | 201 | 108 | 4 | 59 | 248 | 109 | 309 | 1.88e-36 | 131 |
MS.gene83574.t1 | MTR_8g009010 | 45.455 | 165 | 51 | 3 | 86 | 248 | 123 | 250 | 6.86e-35 | 127 |
MS.gene83574.t1 | MTR_2g010450 | 40.000 | 170 | 99 | 3 | 88 | 255 | 168 | 336 | 1.13e-34 | 127 |
MS.gene83574.t1 | MTR_4g009110 | 43.353 | 173 | 95 | 3 | 79 | 248 | 156 | 328 | 3.83e-34 | 126 |
MS.gene83574.t1 | MTR_5g014560 | 39.683 | 189 | 91 | 4 | 78 | 255 | 113 | 289 | 5.09e-34 | 125 |
MS.gene83574.t1 | MTR_4g097940 | 39.181 | 171 | 92 | 4 | 90 | 255 | 148 | 311 | 8.05e-34 | 125 |
MS.gene83574.t1 | MTR_4g066460 | 42.529 | 174 | 91 | 5 | 84 | 255 | 144 | 310 | 1.01e-33 | 124 |
MS.gene83574.t1 | MTR_0250s0040 | 38.624 | 189 | 100 | 4 | 75 | 255 | 66 | 246 | 2.17e-33 | 122 |
MS.gene83574.t1 | MTR_0246s0020 | 37.089 | 213 | 122 | 3 | 53 | 255 | 150 | 360 | 2.99e-33 | 124 |
MS.gene83574.t1 | MTR_4g097920 | 40.936 | 171 | 89 | 5 | 90 | 255 | 133 | 296 | 6.47e-33 | 122 |
MS.gene83574.t1 | MTR_4g097920 | 40.936 | 171 | 89 | 5 | 90 | 255 | 148 | 311 | 7.27e-33 | 122 |
MS.gene83574.t1 | MTR_0246s0020 | 36.893 | 206 | 118 | 3 | 53 | 248 | 150 | 353 | 1.36e-32 | 122 |
MS.gene83574.t1 | MTR_4g067010 | 40.462 | 173 | 96 | 4 | 84 | 255 | 136 | 302 | 1.61e-32 | 121 |
MS.gene83574.t1 | MTR_5g014640 | 40.805 | 174 | 93 | 4 | 77 | 248 | 137 | 302 | 8.70e-32 | 119 |
MS.gene83574.t1 | MTR_0011s0210 | 41.250 | 160 | 92 | 2 | 97 | 255 | 183 | 341 | 1.30e-31 | 119 |
MS.gene83574.t1 | MTR_0011s0260 | 41.566 | 166 | 83 | 4 | 97 | 255 | 183 | 341 | 1.36e-31 | 119 |
MS.gene83574.t1 | MTR_7g080780 | 44.848 | 165 | 79 | 4 | 86 | 248 | 140 | 294 | 2.11e-31 | 118 |
MS.gene83574.t1 | MTR_7g080780 | 44.848 | 165 | 79 | 4 | 86 | 248 | 153 | 307 | 2.39e-31 | 118 |
MS.gene83574.t1 | MTR_4g066380 | 39.189 | 222 | 119 | 5 | 43 | 255 | 93 | 307 | 2.44e-31 | 118 |
MS.gene83574.t1 | MTR_2g104560 | 41.624 | 197 | 102 | 7 | 64 | 255 | 22 | 210 | 4.85e-31 | 115 |
MS.gene83574.t1 | MTR_5g014600 | 36.364 | 231 | 119 | 6 | 53 | 255 | 90 | 320 | 7.31e-31 | 117 |
MS.gene83574.t1 | MTR_2g104500 | 35.581 | 267 | 138 | 9 | 5 | 255 | 9 | 257 | 1.76e-29 | 112 |
MS.gene83574.t1 | MTR_2g104530 | 43.529 | 170 | 84 | 4 | 90 | 255 | 98 | 259 | 7.56e-29 | 110 |
MS.gene83574.t1 | MTR_6g047570 | 39.306 | 173 | 102 | 3 | 84 | 255 | 147 | 317 | 9.15e-28 | 108 |
MS.gene83574.t1 | MTR_0246s0050 | 30.612 | 245 | 150 | 6 | 19 | 255 | 70 | 302 | 3.53e-26 | 104 |
MS.gene83574.t1 | MTR_4g098035 | 30.612 | 245 | 150 | 6 | 19 | 255 | 91 | 323 | 5.41e-26 | 104 |
MS.gene83574.t1 | MTR_4g092700 | 34.409 | 186 | 114 | 4 | 76 | 255 | 133 | 316 | 5.75e-26 | 103 |
MS.gene83574.t1 | MTR_7g451650 | 36.250 | 160 | 77 | 6 | 102 | 256 | 44 | 183 | 8.48e-21 | 87.4 |
MS.gene83574.t1 | MTR_7g451650 | 35.669 | 157 | 76 | 6 | 102 | 253 | 44 | 180 | 1.12e-19 | 84.3 |
MS.gene83574.t1 | MTR_4g097950 | 37.423 | 163 | 91 | 3 | 95 | 248 | 68 | 228 | 3.35e-19 | 84.3 |
MS.gene83574.t1 | MTR_4g009420 | 38.686 | 137 | 64 | 4 | 120 | 255 | 65 | 182 | 4.74e-19 | 82.8 |
MS.gene83574.t1 | MTR_4g009510 | 38.750 | 160 | 81 | 9 | 99 | 255 | 45 | 190 | 7.02e-18 | 79.7 |
MS.gene83574.t1 | MTR_4g009420 | 37.778 | 135 | 64 | 4 | 120 | 253 | 65 | 180 | 1.08e-17 | 79.3 |
MS.gene83574.t1 | MTR_7g050350 | 35.294 | 136 | 68 | 4 | 126 | 256 | 1 | 121 | 1.90e-17 | 77.0 |
MS.gene83574.t1 | MTR_7g451650 | 35.294 | 136 | 68 | 4 | 126 | 256 | 1 | 121 | 1.90e-17 | 77.0 |
MS.gene83574.t1 | MTR_5g014550 | 38.095 | 126 | 76 | 2 | 127 | 251 | 54 | 178 | 4.12e-16 | 74.7 |
MS.gene83574.t1 | MTR_6g047550 | 32.402 | 179 | 92 | 5 | 5 | 164 | 72 | 240 | 7.72e-14 | 69.7 |
MS.gene83574.t1 | MTR_3g030700 | 25.701 | 214 | 145 | 6 | 41 | 248 | 147 | 352 | 2.17e-12 | 66.6 |
MS.gene83574.t1 | MTR_8g064700 | 25.328 | 229 | 147 | 8 | 37 | 246 | 175 | 398 | 4.00e-12 | 65.9 |
MS.gene83574.t1 | MTR_5g030430 | 25.000 | 172 | 106 | 5 | 87 | 235 | 475 | 646 | 9.04e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83574.t1 | AT4G37850 | 36.715 | 207 | 126 | 3 | 54 | 255 | 105 | 311 | 1.34e-35 | 129 |
MS.gene83574.t1 | AT4G37850 | 36.715 | 207 | 126 | 3 | 54 | 255 | 105 | 311 | 1.34e-35 | 129 |
MS.gene83574.t1 | AT2G22750 | 43.275 | 171 | 93 | 1 | 90 | 256 | 119 | 289 | 2.70e-32 | 120 |
MS.gene83574.t1 | AT2G22750 | 45.399 | 163 | 85 | 1 | 90 | 248 | 119 | 281 | 3.36e-32 | 120 |
MS.gene83574.t1 | AT2G22750 | 43.275 | 171 | 93 | 1 | 90 | 256 | 147 | 317 | 5.97e-32 | 120 |
MS.gene83574.t1 | AT2G22750 | 43.275 | 171 | 93 | 1 | 90 | 256 | 143 | 313 | 6.22e-32 | 120 |
MS.gene83574.t1 | AT2G22750 | 45.399 | 163 | 85 | 1 | 90 | 248 | 147 | 309 | 7.61e-32 | 119 |
MS.gene83574.t1 | AT2G22760 | 33.136 | 169 | 110 | 3 | 90 | 255 | 112 | 280 | 3.35e-24 | 98.6 |
MS.gene83574.t1 | AT2G22760 | 34.356 | 163 | 104 | 3 | 90 | 249 | 112 | 274 | 9.10e-24 | 97.4 |
MS.gene83574.t1 | AT2G22770 | 34.132 | 167 | 95 | 3 | 97 | 248 | 132 | 298 | 6.52e-22 | 92.8 |
MS.gene83574.t1 | AT4G29930 | 29.101 | 189 | 115 | 5 | 67 | 249 | 22 | 197 | 2.07e-15 | 73.6 |
MS.gene83574.t1 | AT4G29930 | 29.032 | 186 | 122 | 3 | 67 | 249 | 22 | 200 | 2.19e-15 | 73.6 |
MS.gene83574.t1 | AT4G29930 | 28.421 | 190 | 117 | 5 | 67 | 250 | 22 | 198 | 6.89e-15 | 72.4 |
MS.gene83574.t1 | AT4G17880 | 26.744 | 172 | 92 | 5 | 87 | 235 | 398 | 558 | 9.73e-14 | 70.9 |
MS.gene83574.t1 | AT4G29930 | 26.923 | 208 | 124 | 5 | 67 | 249 | 22 | 226 | 1.16e-13 | 69.3 |
MS.gene83574.t1 | AT5G46760 | 26.437 | 174 | 94 | 5 | 87 | 235 | 397 | 561 | 1.44e-13 | 70.5 |
MS.gene83574.t1 | AT4G09820 | 32.450 | 151 | 77 | 4 | 85 | 234 | 351 | 477 | 1.89e-13 | 70.1 |
MS.gene83574.t1 | AT4G29930 | 25.822 | 213 | 122 | 5 | 67 | 250 | 22 | 227 | 4.42e-13 | 67.8 |
MS.gene83574.t1 | AT4G29930 | 25.822 | 213 | 122 | 5 | 67 | 250 | 22 | 227 | 4.42e-13 | 67.8 |
MS.gene83574.t1 | AT5G57150 | 26.316 | 190 | 131 | 4 | 69 | 249 | 25 | 214 | 1.37e-12 | 65.9 |
MS.gene83574.t1 | AT5G57150 | 25.907 | 193 | 134 | 4 | 69 | 252 | 25 | 217 | 3.43e-12 | 64.7 |
MS.gene83574.t1 | AT5G57150 | 25.389 | 193 | 135 | 4 | 68 | 251 | 25 | 217 | 1.25e-11 | 63.2 |
MS.gene83574.t1 | AT1G63650 | 28.846 | 156 | 94 | 4 | 89 | 227 | 397 | 552 | 2.48e-11 | 63.9 |
MS.gene83574.t1 | AT1G63650 | 28.846 | 156 | 94 | 4 | 89 | 227 | 397 | 552 | 2.48e-11 | 63.9 |
MS.gene83574.t1 | AT1G63650 | 28.846 | 156 | 94 | 4 | 89 | 227 | 397 | 552 | 2.48e-11 | 63.9 |
MS.gene83574.t1 | AT5G57150 | 24.742 | 194 | 137 | 4 | 68 | 252 | 25 | 218 | 2.63e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGTTGAAGTTAGGGTTCT+TGG | 0.250504 | 2.2:-1095618 | MS.gene83574:CDS |
CAAGACATTGGTACTTGTTA+TGG | 0.311267 | 2.2:+1095509 | None:intergenic |
CACTTCTAGAGGTTGAAGTT+AGG | 0.322662 | 2.2:-1095626 | MS.gene83574:CDS |
ACTAGGCCAGTTGTGGCAAT+AGG | 0.327076 | 2.2:+1096208 | None:intergenic |
ATTACTTGCCTGGGCAATAA+TGG | 0.348494 | 2.2:+1095461 | None:intergenic |
AGTACCAATGTCTTGCCATT+TGG | 0.350019 | 2.2:-1095501 | MS.gene83574:CDS |
CTTCTTCAATCCAGGTATAA+AGG | 0.361311 | 2.2:+1095949 | None:intergenic |
AAGTAAGAGCATAGAACTTT+CGG | 0.389368 | 2.2:-1095972 | MS.gene83574:CDS |
ACATAATGTCGGAGAGGAAT+AGG | 0.390434 | 2.2:-1096009 | MS.gene83574:CDS |
AGGTTGAAGTTAGGGTTCTT+GGG | 0.401255 | 2.2:-1095617 | MS.gene83574:CDS |
ACTTCTAGAGGTTGAAGTTA+GGG | 0.415145 | 2.2:-1095625 | MS.gene83574:CDS |
GAACTTTCGGCCTTTATACC+TGG | 0.434477 | 2.2:-1095959 | MS.gene83574:CDS |
TGATGGATGAGTTGTTTACT+AGG | 0.442805 | 2.2:+1096191 | None:intergenic |
CTAGGCCAGTTGTGGCAATA+GGG | 0.443059 | 2.2:+1096209 | None:intergenic |
GATCTTGTGGAGTCTGATAC+AGG | 0.452617 | 2.2:+1096242 | None:intergenic |
AGTTGAATGTGACACATTGA+TGG | 0.456224 | 2.2:+1096174 | None:intergenic |
CTTTATACCTGGATTGAAGA+AGG | 0.465281 | 2.2:-1095948 | MS.gene83574:intron |
AATGGCTGTGTAGATTGATA+AGG | 0.480377 | 2.2:-1095829 | MS.gene83574:intron |
TGAAGTTAGGGTTCTTGGGA+AGG | 0.483922 | 2.2:-1095613 | MS.gene83574:CDS |
ATACTAACCTTCTTCAATCC+AGG | 0.486683 | 2.2:+1095941 | None:intergenic |
AGTGTCCCTATTGCCACAAC+TGG | 0.491296 | 2.2:-1096214 | MS.gene83574:CDS |
GACATTAAGAAGAAAGATGC+AGG | 0.492316 | 2.2:-1095738 | MS.gene83574:CDS |
TCATGGTGTTGTTCAATTGT+TGG | 0.495507 | 2.2:+1096112 | None:intergenic |
AATGTCTCAGAAGCGCTTCG+AGG | 0.506140 | 2.2:+1096037 | None:intergenic |
GCTTCTTTGAATTCGACCCT+TGG | 0.521451 | 2.2:+1096059 | None:intergenic |
ATGACAAAGGCAAAGAATCA+TGG | 0.529186 | 2.2:+1096095 | None:intergenic |
TGACATCACCATTATTGCCC+AGG | 0.532981 | 2.2:-1095469 | MS.gene83574:CDS |
TGATAAGGTTCATGTGATAA+CGG | 0.539677 | 2.2:-1095814 | MS.gene83574:CDS |
GGTATTGATAATGAGTTGGT+TGG | 0.541397 | 2.2:+1096133 | None:intergenic |
GTGAAATGAACACTGAAGAA+TGG | 0.542671 | 2.2:-1095659 | MS.gene83574:CDS |
TTTGCCTTTGTCATCATCAA+CGG | 0.545210 | 2.2:-1096086 | MS.gene83574:CDS |
ATTAACAAAGACACTGCAAT+CGG | 0.547823 | 2.2:-1095681 | MS.gene83574:CDS |
ATGTCAAGAGTATTTCCAAA+TGG | 0.548099 | 2.2:+1095486 | None:intergenic |
TGTTAATCAAGATTCATTGT+GGG | 0.549660 | 2.2:-1095587 | MS.gene83574:CDS |
TGTTGGTATTGATAATGAGT+TGG | 0.562767 | 2.2:+1096129 | None:intergenic |
ATTTCCAAATGGCAAGACAT+TGG | 0.571967 | 2.2:+1095497 | None:intergenic |
GTGTTAATCAAGATTCATTG+TGG | 0.578908 | 2.2:-1095588 | MS.gene83574:CDS |
GACATTAGATCACATAATGT+CGG | 0.591474 | 2.2:-1096020 | MS.gene83574:CDS |
GCGAAATGAATCACTTCTAG+AGG | 0.597091 | 2.2:-1095637 | MS.gene83574:CDS |
GGGACACTGAATTGATCTTG+TGG | 0.603401 | 2.2:+1096229 | None:intergenic |
GTTGTTTACTAGGCCAGTTG+TGG | 0.626590 | 2.2:+1096201 | None:intergenic |
TCATCATCAACGGATAACCA+AGG | 0.662866 | 2.2:-1096076 | MS.gene83574:CDS |
CATCATCAACGGATAACCAA+GGG | 0.664890 | 2.2:-1096075 | MS.gene83574:CDS |
TTATCCGTTGATGATGACAA+AGG | 0.681037 | 2.2:+1096082 | None:intergenic |
TAGATCACATAATGTCGGAG+AGG | 0.685140 | 2.2:-1096015 | MS.gene83574:CDS |
TGGGATGCAAGAAGAGATTG+TGG | 0.685234 | 2.2:-1095568 | MS.gene83574:CDS |
TCTGATACAGGATATCTCTG+AGG | 0.706562 | 2.2:+1096254 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATT+TGG | + | chr2.2:1096017-1096036 | None:intergenic | 0.0% |
!! | AATAAAAATGATCTAATTAA+TGG | - | chr2.2:1095526-1095545 | MS.gene83574:CDS | 10.0% |
!! | AATATATATTATATTAAACC+TGG | - | chr2.2:1095457-1095476 | MS.gene83574:intron | 10.0% |
!!! | ATTTTTATAGTCGTTATCAT+TGG | - | chr2.2:1095492-1095511 | MS.gene83574:CDS | 20.0% |
! | AAAAATTTACTCATTCATCC+AGG | + | chr2.2:1095478-1095497 | None:intergenic | 25.0% |
! | AAAACCAAATTGATTAGCAA+TGG | + | chr2.2:1096270-1096289 | None:intergenic | 25.0% |
! | TGTTAATCAAGATTCATTGT+GGG | - | chr2.2:1095786-1095805 | MS.gene83574:CDS | 25.0% |
!!! | TGCTAATCAATTTGGTTTTT+TGG | - | chr2.2:1096271-1096290 | MS.gene83574:CDS | 25.0% |
AAAGCCATTGCTAATCAATT+TGG | - | chr2.2:1096263-1096282 | MS.gene83574:CDS | 30.0% | |
AATCCCAAGTACTAAATTAC+TGG | + | chr2.2:1096228-1096247 | None:intergenic | 30.0% | |
AGTGAAAAAACTAAGAGTAG+TGG | - | chr2.2:1096147-1096166 | MS.gene83574:CDS | 30.0% | |
ATACATACATGCATACAGAT+GGG | - | chr2.2:1096094-1096113 | MS.gene83574:CDS | 30.0% | |
ATTAACAAAGACACTGCAAT+CGG | - | chr2.2:1095692-1095711 | MS.gene83574:CDS | 30.0% | |
CAATGAAGTGTGCTTAATTA+AGG | - | chr2.2:1096202-1096221 | MS.gene83574:CDS | 30.0% | |
GACATTAGATCACATAATGT+CGG | - | chr2.2:1095353-1095372 | MS.gene83574:intron | 30.0% | |
GTGTTAATCAAGATTCATTG+TGG | - | chr2.2:1095785-1095804 | MS.gene83574:CDS | 30.0% | |
TGATAAGGTTCATGTGATAA+CGG | - | chr2.2:1095559-1095578 | MS.gene83574:CDS | 30.0% | |
TGGAAGAAAATTAAGAAGCA+TGG | - | chr2.2:1095967-1095986 | MS.gene83574:CDS | 30.0% | |
! | AAGTAAGAGCATAGAACTTT+CGG | - | chr2.2:1095401-1095420 | MS.gene83574:intron | 30.0% |
! | TAGAACACGAGATCTTTTTA+TGG | + | chr2.2:1095672-1095691 | None:intergenic | 30.0% |
!! | ATGTCAAGAGTATTTCCAAA+TGG | + | chr2.2:1095890-1095909 | None:intergenic | 30.0% |
!! | TGTTGGTATTGATAATGAGT+TGG | + | chr2.2:1095247-1095266 | None:intergenic | 30.0% |
!! | TTTTTGGTAATTACTTGCCT+GGG | + | chr2.2:1095924-1095943 | None:intergenic | 30.0% |
!!! | TTTTTTCACTAGATCCTTCA+CGG | + | chr2.2:1096137-1096156 | None:intergenic | 30.0% |
!!! | TTTTTTGGTAATTACTTGCC+TGG | + | chr2.2:1095925-1095944 | None:intergenic | 30.0% |
AAGGCCAGTAATTTAGTACT+TGG | - | chr2.2:1096221-1096240 | MS.gene83574:CDS | 35.0% | |
AATGGCTGTGTAGATTGATA+AGG | - | chr2.2:1095544-1095563 | MS.gene83574:CDS | 35.0% | |
AGGCCAGTAATTTAGTACTT+GGG | - | chr2.2:1096222-1096241 | MS.gene83574:CDS | 35.0% | |
AGTTGAATGTGACACATTGA+TGG | + | chr2.2:1095202-1095221 | None:intergenic | 35.0% | |
ATACTAACCTTCTTCAATCC+AGG | + | chr2.2:1095435-1095454 | None:intergenic | 35.0% | |
ATGACAAAGGCAAAGAATCA+TGG | + | chr2.2:1095281-1095300 | None:intergenic | 35.0% | |
ATTTCCAAATGGCAAGACAT+TGG | + | chr2.2:1095879-1095898 | None:intergenic | 35.0% | |
CATACATACATGCATACAGA+TGG | - | chr2.2:1096093-1096112 | MS.gene83574:CDS | 35.0% | |
CTTCTTCAATCCAGGTATAA+AGG | + | chr2.2:1095427-1095446 | None:intergenic | 35.0% | |
CTTTATACCTGGATTGAAGA+AGG | - | chr2.2:1095425-1095444 | MS.gene83574:intron | 35.0% | |
GACATTAAGAAGAAAGATGC+AGG | - | chr2.2:1095635-1095654 | MS.gene83574:CDS | 35.0% | |
GTGAAATGAACACTGAAGAA+TGG | - | chr2.2:1095714-1095733 | MS.gene83574:CDS | 35.0% | |
TTAGTACTTGGGATTTGAGA+AGG | - | chr2.2:1096233-1096252 | MS.gene83574:CDS | 35.0% | |
TTTGCCTTTGTCATCATCAA+CGG | - | chr2.2:1095287-1095306 | MS.gene83574:intron | 35.0% | |
! | ACTTCTAGAGGTTGAAGTTA+GGG | - | chr2.2:1095748-1095767 | MS.gene83574:CDS | 35.0% |
! | CAAGACATTGGTACTTGTTA+TGG | + | chr2.2:1095867-1095886 | None:intergenic | 35.0% |
! | TAAATACAAGTTGACCGTGA+AGG | - | chr2.2:1096120-1096139 | MS.gene83574:CDS | 35.0% |
! | TGATGGATGAGTTGTTTACT+AGG | + | chr2.2:1095185-1095204 | None:intergenic | 35.0% |
!! | GGTATTGATAATGAGTTGGT+TGG | + | chr2.2:1095243-1095262 | None:intergenic | 35.0% |
!! | TCATGGTGTTGTTCAATTGT+TGG | + | chr2.2:1095264-1095283 | None:intergenic | 35.0% |
!! | TTATCCGTTGATGATGACAA+AGG | + | chr2.2:1095294-1095313 | None:intergenic | 35.0% |
!!! | AATTTGGTTTTTTGGTGTGC+AGG | - | chr2.2:1096279-1096298 | MS.gene83574:CDS | 35.0% |
ACATAATGTCGGAGAGGAAT+AGG | - | chr2.2:1095364-1095383 | MS.gene83574:intron | 40.0% | |
AGGTTGAAGTTAGGGTTCTT+GGG | - | chr2.2:1095756-1095775 | MS.gene83574:CDS | 40.0% | |
AGTACCAATGTCTTGCCATT+TGG | - | chr2.2:1095872-1095891 | MS.gene83574:intron | 40.0% | |
ATTACTTGCCTGGGCAATAA+TGG | + | chr2.2:1095915-1095934 | None:intergenic | 40.0% | |
CATCATCAACGGATAACCAA+GGG | - | chr2.2:1095298-1095317 | MS.gene83574:intron | 40.0% | |
GCGAAATGAATCACTTCTAG+AGG | - | chr2.2:1095736-1095755 | MS.gene83574:CDS | 40.0% | |
TAGATCACATAATGTCGGAG+AGG | - | chr2.2:1095358-1095377 | MS.gene83574:intron | 40.0% | |
TCATCATCAACGGATAACCA+AGG | - | chr2.2:1095297-1095316 | MS.gene83574:intron | 40.0% | |
TCTGATACAGGATATCTCTG+AGG | + | chr2.2:1095122-1095141 | None:intergenic | 40.0% | |
! | CACTTCTAGAGGTTGAAGTT+AGG | - | chr2.2:1095747-1095766 | MS.gene83574:CDS | 40.0% |
!!! | GTTTTTTGGTGTGCAGGTTT+AGG | - | chr2.2:1096285-1096304 | MS.gene83574:CDS | 40.0% |
ACTAAGAGTAGTGGCTACGT+TGG | - | chr2.2:1096156-1096175 | MS.gene83574:CDS | 45.0% | |
GAACTTTCGGCCTTTATACC+TGG | - | chr2.2:1095414-1095433 | MS.gene83574:intron | 45.0% | |
GAGGTTGAAGTTAGGGTTCT+TGG | - | chr2.2:1095755-1095774 | MS.gene83574:CDS | 45.0% | |
GATCTTGTGGAGTCTGATAC+AGG | + | chr2.2:1095134-1095153 | None:intergenic | 45.0% | |
GCTTCTTTGAATTCGACCCT+TGG | + | chr2.2:1095317-1095336 | None:intergenic | 45.0% | |
GGGACACTGAATTGATCTTG+TGG | + | chr2.2:1095147-1095166 | None:intergenic | 45.0% | |
GTTGTTTACTAGGCCAGTTG+TGG | + | chr2.2:1095175-1095194 | None:intergenic | 45.0% | |
TGAAGTTAGGGTTCTTGGGA+AGG | - | chr2.2:1095760-1095779 | MS.gene83574:CDS | 45.0% | |
TGACATCACCATTATTGCCC+AGG | - | chr2.2:1095904-1095923 | MS.gene83574:intron | 45.0% | |
TGGGATGCAAGAAGAGATTG+TGG | - | chr2.2:1095805-1095824 | MS.gene83574:CDS | 45.0% | |
!! | ATAATATATATATAATTTCA+TGG | - | chr2.2:1095947-1095966 | MS.gene83574:intron | 5.0% |
!!! | ATATATATATTATAGTTTTT+TGG | + | chr2.2:1095940-1095959 | None:intergenic | 5.0% |
AAGAGTAGTGGCTACGTTGG+AGG | - | chr2.2:1096159-1096178 | MS.gene83574:CDS | 50.0% | |
ACTAGGCCAGTTGTGGCAAT+AGG | + | chr2.2:1095168-1095187 | None:intergenic | 50.0% | |
AGTGTCCCTATTGCCACAAC+TGG | - | chr2.2:1095159-1095178 | MS.gene83574:intron | 50.0% | |
CTAGGCCAGTTGTGGCAATA+GGG | + | chr2.2:1095167-1095186 | None:intergenic | 50.0% | |
!! | AATGTCTCAGAAGCGCTTCG+AGG | + | chr2.2:1095339-1095358 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 1095072 | 1096323 | 1095072 | ID=MS.gene83574 |
chr2.2 | mRNA | 1095072 | 1096323 | 1095072 | ID=MS.gene83574.t1;Parent=MS.gene83574 |
chr2.2 | exon | 1095949 | 1096323 | 1095949 | ID=MS.gene83574.t1.exon1;Parent=MS.gene83574.t1 |
chr2.2 | CDS | 1095949 | 1096323 | 1095949 | ID=cds.MS.gene83574.t1;Parent=MS.gene83574.t1 |
chr2.2 | exon | 1095466 | 1095838 | 1095466 | ID=MS.gene83574.t1.exon2;Parent=MS.gene83574.t1 |
chr2.2 | CDS | 1095466 | 1095838 | 1095466 | ID=cds.MS.gene83574.t1;Parent=MS.gene83574.t1 |
chr2.2 | exon | 1095072 | 1095094 | 1095072 | ID=MS.gene83574.t1.exon3;Parent=MS.gene83574.t1 |
chr2.2 | CDS | 1095072 | 1095094 | 1095072 | ID=cds.MS.gene83574.t1;Parent=MS.gene83574.t1 |
Gene Sequence |
Protein sequence |