Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83823.t1 | AES69260.2 | 96.7 | 366 | 10 | 2 | 1 | 364 | 2 | 367 | 1.60E-196 | 695.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83823.t1 | Q9FME3 | 40.6 | 335 | 152 | 14 | 32 | 354 | 40 | 339 | 6.7e-42 | 172.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83823.t1 | G7IZC4 | 96.7 | 366 | 10 | 2 | 1 | 364 | 2 | 367 | 1.2e-196 | 695.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene83823.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83823.t1 | MTR_3g026050 | 96.094 | 384 | 13 | 2 | 1 | 382 | 2 | 385 | 0.0 | 739 |
| MS.gene83823.t1 | MTR_4g109660 | 74.107 | 112 | 26 | 2 | 11 | 122 | 14 | 122 | 2.78e-49 | 168 |
| MS.gene83823.t1 | MTR_7g015010 | 45.217 | 230 | 99 | 8 | 1 | 224 | 1 | 209 | 1.73e-43 | 154 |
| MS.gene83823.t1 | MTR_6g015350 | 64.356 | 101 | 33 | 2 | 36 | 135 | 31 | 129 | 1.00e-35 | 133 |
| MS.gene83823.t1 | MTR_8g463380 | 58.824 | 68 | 28 | 0 | 50 | 117 | 48 | 115 | 2.84e-20 | 92.4 |
| MS.gene83823.t1 | MTR_2g090960 | 58.824 | 68 | 28 | 0 | 50 | 117 | 18 | 85 | 1.93e-19 | 88.6 |
| MS.gene83823.t1 | MTR_2g078200 | 57.353 | 68 | 29 | 0 | 50 | 117 | 14 | 81 | 4.74e-19 | 87.0 |
| MS.gene83823.t1 | MTR_4g079580 | 33.188 | 229 | 109 | 9 | 50 | 274 | 16 | 204 | 1.88e-18 | 85.9 |
| MS.gene83823.t1 | MTR_4g111935 | 33.099 | 142 | 87 | 2 | 57 | 195 | 133 | 269 | 4.83e-14 | 73.2 |
| MS.gene83823.t1 | MTR_6g017055 | 51.724 | 58 | 28 | 0 | 57 | 114 | 127 | 184 | 2.38e-12 | 68.2 |
| MS.gene83823.t1 | MTR_7g018500 | 49.123 | 57 | 29 | 0 | 58 | 114 | 122 | 178 | 2.25e-11 | 65.1 |
| MS.gene83823.t1 | MTR_1g103380 | 48.333 | 60 | 31 | 0 | 55 | 114 | 200 | 259 | 4.74e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83823.t1 | AT5G60970 | 50.679 | 221 | 79 | 9 | 39 | 251 | 46 | 244 | 9.16e-53 | 179 |
| MS.gene83823.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 2.11e-42 | 149 |
| MS.gene83823.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 39 | 128 | 16 | 105 | 2.11e-42 | 149 |
| MS.gene83823.t1 | AT3G02150 | 70.213 | 94 | 25 | 2 | 43 | 135 | 61 | 152 | 3.81e-39 | 141 |
| MS.gene83823.t1 | AT3G02150 | 64.035 | 114 | 36 | 3 | 23 | 135 | 43 | 152 | 9.39e-39 | 142 |
| MS.gene83823.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 35 | 117 | 32 | 111 | 6.45e-26 | 107 |
| MS.gene83823.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 35 | 117 | 32 | 111 | 6.45e-26 | 107 |
| MS.gene83823.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.04e-25 | 105 |
| MS.gene83823.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 46 | 117 | 32 | 103 | 3.04e-25 | 105 |
| MS.gene83823.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.76e-21 | 95.5 |
| MS.gene83823.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 50 | 117 | 43 | 110 | 1.76e-21 | 95.5 |
| MS.gene83823.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.41e-21 | 94.0 |
| MS.gene83823.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.41e-21 | 94.0 |
| MS.gene83823.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.41e-21 | 94.0 |
| MS.gene83823.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 50 | 117 | 39 | 106 | 6.41e-21 | 94.0 |
| MS.gene83823.t1 | AT2G31070 | 60.000 | 65 | 26 | 0 | 50 | 114 | 23 | 87 | 5.69e-19 | 87.8 |
| MS.gene83823.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 2.76e-14 | 73.9 |
| MS.gene83823.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 48 | 114 | 104 | 170 | 2.79e-14 | 73.9 |
| MS.gene83823.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 6.43e-14 | 72.8 |
| MS.gene83823.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 6.43e-14 | 72.8 |
| MS.gene83823.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 45 | 114 | 76 | 145 | 7.42e-14 | 72.8 |
| MS.gene83823.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 2.83e-12 | 68.2 |
| MS.gene83823.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 2.83e-12 | 68.2 |
| MS.gene83823.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 58 | 145 | 150 | 238 | 3.75e-12 | 67.8 |
| MS.gene83823.t1 | AT3G18550 | 50.877 | 57 | 28 | 0 | 58 | 114 | 150 | 206 | 1.11e-11 | 66.2 |
Find 75 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGGCAAGGTCAAAATTT+TGG | 0.095121 | 3.2:+15979355 | MS.gene83823:CDS |
| TCAACTGGATTGTTCATAAA+AGG | 0.187602 | 3.2:-15979771 | None:intergenic |
| ATTCCAACAAATGTGGAATT+AGG | 0.207117 | 3.2:-15979324 | None:intergenic |
| ACCATTTAGCTCCAAGCTTC+TGG | 0.216080 | 3.2:+15979923 | MS.gene83823:CDS |
| CTTGATACTCTCACAATTCT+TGG | 0.226103 | 3.2:-15978988 | None:intergenic |
| TTGCACTTCCCATTTCCTTT+TGG | 0.260633 | 3.2:+15979681 | MS.gene83823:CDS |
| CCATTTCCATTACTTTGATT+TGG | 0.264187 | 3.2:-15979657 | None:intergenic |
| AGCAAAGTTTGTACAATAAG+AGG | 0.267106 | 3.2:+15979036 | MS.gene83823:CDS |
| TGTTGGAATTCAAAATCTTA+TGG | 0.268566 | 3.2:+15979338 | MS.gene83823:CDS |
| AAATGGTTGAATTGTATTCT+TGG | 0.276038 | 3.2:-15979801 | None:intergenic |
| TTACCTCCTTCTTGCTTTGC+TGG | 0.276104 | 3.2:-15978883 | None:intergenic |
| TTGGGTTTATGAACTGAAAA+TGG | 0.288622 | 3.2:-15979818 | None:intergenic |
| AGTTTGTCTTTATCTCAATT+TGG | 0.291167 | 3.2:+15979594 | MS.gene83823:CDS |
| CTTCAAGATAAACTTGGTTT+AGG | 0.292497 | 3.2:+15979114 | MS.gene83823:CDS |
| TGTGAATTTCCAAAAGGAAA+TGG | 0.323985 | 3.2:-15979690 | None:intergenic |
| TCCAGAAGCTTGGAGCTAAA+TGG | 0.342186 | 3.2:-15979924 | None:intergenic |
| GATCCTAATTCCACATTTGT+TGG | 0.359932 | 3.2:+15979321 | MS.gene83823:CDS |
| GGAAATTCACAATTATTGTT+TGG | 0.370099 | 3.2:+15979702 | MS.gene83823:CDS |
| AACCAATCAATTACTTTACT+TGG | 0.384521 | 3.2:-15979141 | None:intergenic |
| GATCTACTTGTTGATGAGAT+TGG | 0.388449 | 3.2:-15979635 | None:intergenic |
| GTGAGAGTATCAAGAACATT+TGG | 0.394961 | 3.2:+15978997 | MS.gene83823:CDS |
| GCTTCTCATGAACTTTCTCT+TGG | 0.400555 | 3.2:+15979288 | MS.gene83823:CDS |
| GTGAATTTCCAAAAGGAAAT+GGG | 0.404629 | 3.2:-15979689 | None:intergenic |
| AAGAGAGTACTTTAGTGAAA+AGG | 0.409808 | 3.2:+15979413 | MS.gene83823:CDS |
| AGAAGGAGGTAATACTAGTA+TGG | 0.416415 | 3.2:+15978894 | MS.gene83823:CDS |
| AACCAAGTAAAGTAATTGAT+TGG | 0.421109 | 3.2:+15979139 | MS.gene83823:CDS |
| ATTGATCATGAAAAGGAAGT+AGG | 0.421778 | 3.2:-15979254 | None:intergenic |
| GTTATTAAAATCCAGAAGCT+TGG | 0.425560 | 3.2:-15979934 | None:intergenic |
| GAGCTAAATGGTACCGGAAA+AGG | 0.430903 | 3.2:-15979912 | None:intergenic |
| TAAGAGGGTTAAGAGATAGA+AGG | 0.432238 | 3.2:+15979052 | MS.gene83823:CDS |
| TCTCAATTTGGAAGTAGTAA+TGG | 0.439801 | 3.2:+15979606 | MS.gene83823:CDS |
| GTGGAATTAGGATCATATAA+AGG | 0.445075 | 3.2:-15979312 | None:intergenic |
| CCAAATCAAAGTAATGGAAA+TGG | 0.449767 | 3.2:+15979657 | MS.gene83823:CDS |
| GAACATTTGGAGGCAAAGAT+AGG | 0.452527 | 3.2:+15979010 | MS.gene83823:CDS |
| GGCATAGTTTGTGAAGAACT+TGG | 0.455099 | 3.2:-15979837 | None:intergenic |
| GGTACCGGAAAAGGTCTAAC+CGG | 0.467145 | 3.2:-15979903 | None:intergenic |
| TGAAATTGTGAAAAGCTTTG+AGG | 0.469301 | 3.2:-15979213 | None:intergenic |
| TCATATAATTGAATTGCTGT+TGG | 0.472619 | 3.2:-15979090 | None:intergenic |
| TTACTTGATTGATCATGAAA+AGG | 0.475662 | 3.2:-15979261 | None:intergenic |
| CAATAACAATAGTAACCAAC+CGG | 0.483604 | 3.2:+15979956 | MS.gene83823:CDS |
| TTGATCATGAAAAGGAAGTA+GGG | 0.484366 | 3.2:-15979253 | None:intergenic |
| GGTTAAGAGATAGAAGGATA+AGG | 0.491272 | 3.2:+15979058 | MS.gene83823:CDS |
| TCACTCATTCAATTCACCTC+CGG | 0.496606 | 3.2:+15979884 | MS.gene83823:CDS |
| AATAATTGTGAATTTCCAAA+AGG | 0.497299 | 3.2:-15979696 | None:intergenic |
| CATTGTCTTGATGTACTTGA+AGG | 0.499610 | 3.2:-15978943 | None:intergenic |
| TTGAATGAGTGATGAAAAGA+TGG | 0.505850 | 3.2:-15979873 | None:intergenic |
| GTAGATCCAAATCAAAGTAA+TGG | 0.511396 | 3.2:+15979651 | MS.gene83823:CDS |
| GACATAGATTCAAGGACTAA+AGG | 0.516620 | 3.2:+15979378 | MS.gene83823:CDS |
| AAAGATGGAATGAGAGGATG+AGG | 0.519478 | 3.2:-15979858 | None:intergenic |
| TATGATCTTCAAGATAAACT+TGG | 0.527365 | 3.2:+15979108 | MS.gene83823:CDS |
| GCATAGTTTGTGAAGAACTT+GGG | 0.533891 | 3.2:-15979836 | None:intergenic |
| AATGAGGAAGAAAATCAAGT+TGG | 0.535305 | 3.2:+15979453 | MS.gene83823:CDS |
| AAATTAGAATGAGTCTCCAT+AGG | 0.541479 | 3.2:-15979525 | None:intergenic |
| AGCTTGGAGCTAAATGGTAC+CGG | 0.542441 | 3.2:-15979918 | None:intergenic |
| AATTAGAATGAGTCTCCATA+GGG | 0.543229 | 3.2:-15979524 | None:intergenic |
| CTTTGAGGAAATTGAAGTGG+AGG | 0.544948 | 3.2:-15979198 | None:intergenic |
| GCAAAGTTTGTACAATAAGA+GGG | 0.549035 | 3.2:+15979037 | MS.gene83823:CDS |
| ACAAACTAGAAGCTTCTGAA+TGG | 0.549145 | 3.2:-15979578 | None:intergenic |
| AGTAGGGTTTGTGAATGAAG+AGG | 0.550409 | 3.2:-15979237 | None:intergenic |
| AAGCTTTGAGGAAATTGAAG+TGG | 0.558131 | 3.2:-15979201 | None:intergenic |
| TTTGAGGAAATTGAAGTGGA+GGG | 0.564714 | 3.2:-15979197 | None:intergenic |
| ACTTTAGTGAAAAGGATAAG+TGG | 0.567465 | 3.2:+15979421 | MS.gene83823:CDS |
| CTACTCAAATGTGATGATGA+TGG | 0.574262 | 3.2:-15979744 | None:intergenic |
| GAATTCAAAATCTTATGGCA+AGG | 0.581024 | 3.2:+15979343 | MS.gene83823:CDS |
| CGACGAGCACTATCATCATC+CGG | 0.584897 | 3.2:-15979975 | None:intergenic |
| AGAGTATCAAGAACATTTGG+AGG | 0.590062 | 3.2:+15979000 | MS.gene83823:CDS |
| TAAGTGGATCAAAACAAATG+AGG | 0.592313 | 3.2:+15979437 | MS.gene83823:CDS |
| GATGGTGTAGTAGAAGAAGA+AGG | 0.597975 | 3.2:-15979726 | None:intergenic |
| AATTATCCAGCAAAGCAAGA+AGG | 0.607496 | 3.2:+15978877 | MS.gene83823:CDS |
| TGATGAAAAGATGGAATGAG+AGG | 0.628080 | 3.2:-15979864 | None:intergenic |
| ATGATGGCAAGTTCAAGAGA+AGG | 0.630706 | 3.2:+15978853 | None:intergenic |
| TATCCAGCAAAGCAAGAAGG+AGG | 0.651323 | 3.2:+15978880 | MS.gene83823:CDS |
| GAGCACTATCATCATCCGGT+TGG | 0.656995 | 3.2:-15979971 | None:intergenic |
| CTTCAAGTACATCAAGACAA+TGG | 0.691220 | 3.2:+15978944 | MS.gene83823:CDS |
| ACCGGAAAAGGTCTAACCGG+AGG | 0.695953 | 3.2:-15979900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTGAAAAAAAATTCA+AGG | + | chr3.2:15978918-15978937 | MS.gene83823:CDS | 10.0% |
| !! | AATAATTGTGAATTTCCAAA+AGG | - | chr3.2:15979699-15979718 | None:intergenic | 20.0% |
| ! | AAATGGTTGAATTGTATTCT+TGG | - | chr3.2:15979804-15979823 | None:intergenic | 25.0% |
| ! | AACCAAGTAAAGTAATTGAT+TGG | + | chr3.2:15979139-15979158 | MS.gene83823:CDS | 25.0% |
| ! | AACCAATCAATTACTTTACT+TGG | - | chr3.2:15979144-15979163 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTTATCTCAATT+TGG | + | chr3.2:15979594-15979613 | MS.gene83823:CDS | 25.0% |
| ! | GGAAATTCACAATTATTGTT+TGG | + | chr3.2:15979702-15979721 | MS.gene83823:CDS | 25.0% |
| ! | TATGATCTTCAAGATAAACT+TGG | + | chr3.2:15979108-15979127 | MS.gene83823:CDS | 25.0% |
| ! | TCATATAATTGAATTGCTGT+TGG | - | chr3.2:15979093-15979112 | None:intergenic | 25.0% |
| ! | TGTTGGAATTCAAAATCTTA+TGG | + | chr3.2:15979338-15979357 | MS.gene83823:CDS | 25.0% |
| ! | TTACTTGATTGATCATGAAA+AGG | - | chr3.2:15979264-15979283 | None:intergenic | 25.0% |
| !! | ATTTTGAATTCCAACAAATG+TGG | - | chr3.2:15979334-15979353 | None:intergenic | 25.0% |
| AAATTAGAATGAGTCTCCAT+AGG | - | chr3.2:15979528-15979547 | None:intergenic | 30.0% | |
| AATGAGGAAGAAAATCAAGT+TGG | + | chr3.2:15979453-15979472 | MS.gene83823:CDS | 30.0% | |
| AATTAGAATGAGTCTCCATA+GGG | - | chr3.2:15979527-15979546 | None:intergenic | 30.0% | |
| ACTTTAGTGAAAAGGATAAG+TGG | + | chr3.2:15979421-15979440 | MS.gene83823:CDS | 30.0% | |
| AGCAAAGTTTGTACAATAAG+AGG | + | chr3.2:15979036-15979055 | MS.gene83823:CDS | 30.0% | |
| ATTCCAACAAATGTGGAATT+AGG | - | chr3.2:15979327-15979346 | None:intergenic | 30.0% | |
| ATTGATCATGAAAAGGAAGT+AGG | - | chr3.2:15979257-15979276 | None:intergenic | 30.0% | |
| CAATAACAATAGTAACCAAC+CGG | + | chr3.2:15979956-15979975 | MS.gene83823:CDS | 30.0% | |
| CCATTTCCATTACTTTGATT+TGG | - | chr3.2:15979660-15979679 | None:intergenic | 30.0% | |
| CTTCAAGATAAACTTGGTTT+AGG | + | chr3.2:15979114-15979133 | MS.gene83823:CDS | 30.0% | |
| GAATTCAAAATCTTATGGCA+AGG | + | chr3.2:15979343-15979362 | MS.gene83823:CDS | 30.0% | |
| GCAAAGTTTGTACAATAAGA+GGG | + | chr3.2:15979037-15979056 | MS.gene83823:CDS | 30.0% | |
| GTAGATCCAAATCAAAGTAA+TGG | + | chr3.2:15979651-15979670 | MS.gene83823:CDS | 30.0% | |
| GTGAATTTCCAAAAGGAAAT+GGG | - | chr3.2:15979692-15979711 | None:intergenic | 30.0% | |
| GTGGAATTAGGATCATATAA+AGG | - | chr3.2:15979315-15979334 | None:intergenic | 30.0% | |
| GTTATTAAAATCCAGAAGCT+TGG | - | chr3.2:15979937-15979956 | None:intergenic | 30.0% | |
| TAAGTGGATCAAAACAAATG+AGG | + | chr3.2:15979437-15979456 | MS.gene83823:CDS | 30.0% | |
| TCAACTGGATTGTTCATAAA+AGG | - | chr3.2:15979774-15979793 | None:intergenic | 30.0% | |
| TCTCAATTTGGAAGTAGTAA+TGG | + | chr3.2:15979606-15979625 | MS.gene83823:CDS | 30.0% | |
| TGAAATTGTGAAAAGCTTTG+AGG | - | chr3.2:15979216-15979235 | None:intergenic | 30.0% | |
| TGTGAATTTCCAAAAGGAAA+TGG | - | chr3.2:15979693-15979712 | None:intergenic | 30.0% | |
| TTGAATGAGTGATGAAAAGA+TGG | - | chr3.2:15979876-15979895 | None:intergenic | 30.0% | |
| TTGATCATGAAAAGGAAGTA+GGG | - | chr3.2:15979256-15979275 | None:intergenic | 30.0% | |
| TTGGGTTTATGAACTGAAAA+TGG | - | chr3.2:15979821-15979840 | None:intergenic | 30.0% | |
| ! | ATTCTTGGATCATTTTCAAC+TGG | - | chr3.2:15979789-15979808 | None:intergenic | 30.0% |
| ! | CCAAATCAAAGTAATGGAAA+TGG | + | chr3.2:15979657-15979676 | MS.gene83823:CDS | 30.0% |
| ! | TATGGCAAGGTCAAAATTTT+GGG | + | chr3.2:15979356-15979375 | MS.gene83823:CDS | 30.0% |
| ! | TTATGGCAAGGTCAAAATTT+TGG | + | chr3.2:15979355-15979374 | MS.gene83823:CDS | 30.0% |
| !! | AAGAGAGTACTTTAGTGAAA+AGG | + | chr3.2:15979413-15979432 | MS.gene83823:CDS | 30.0% |
| !!! | AATTTTGGGACATAGATTCA+AGG | + | chr3.2:15979370-15979389 | MS.gene83823:CDS | 30.0% |
| AATTATCCAGCAAAGCAAGA+AGG | + | chr3.2:15978877-15978896 | MS.gene83823:CDS | 35.0% | |
| ACAAACTAGAAGCTTCTGAA+TGG | - | chr3.2:15979581-15979600 | None:intergenic | 35.0% | |
| AGAAGGAGGTAATACTAGTA+TGG | + | chr3.2:15978894-15978913 | MS.gene83823:CDS | 35.0% | |
| CATTGTCTTGATGTACTTGA+AGG | - | chr3.2:15978946-15978965 | None:intergenic | 35.0% | |
| CTTCAAGTACATCAAGACAA+TGG | + | chr3.2:15978944-15978963 | MS.gene83823:CDS | 35.0% | |
| CTTGATACTCTCACAATTCT+TGG | - | chr3.2:15978991-15979010 | None:intergenic | 35.0% | |
| GACATAGATTCAAGGACTAA+AGG | + | chr3.2:15979378-15979397 | MS.gene83823:CDS | 35.0% | |
| GATCCTAATTCCACATTTGT+TGG | + | chr3.2:15979321-15979340 | MS.gene83823:CDS | 35.0% | |
| GGTTAAGAGATAGAAGGATA+AGG | + | chr3.2:15979058-15979077 | MS.gene83823:CDS | 35.0% | |
| TAAGAGGGTTAAGAGATAGA+AGG | + | chr3.2:15979052-15979071 | MS.gene83823:CDS | 35.0% | |
| TGATGAAAAGATGGAATGAG+AGG | - | chr3.2:15979867-15979886 | None:intergenic | 35.0% | |
| TTTGAGGAAATTGAAGTGGA+GGG | - | chr3.2:15979200-15979219 | None:intergenic | 35.0% | |
| ! | AACTCAAAAGCTTTTCCCTA+TGG | + | chr3.2:15979509-15979528 | MS.gene83823:CDS | 35.0% |
| ! | AGAGTATCAAGAACATTTGG+AGG | + | chr3.2:15979000-15979019 | MS.gene83823:CDS | 35.0% |
| ! | CTACTCAAATGTGATGATGA+TGG | - | chr3.2:15979747-15979766 | None:intergenic | 35.0% |
| ! | GATCTACTTGTTGATGAGAT+TGG | - | chr3.2:15979638-15979657 | None:intergenic | 35.0% |
| ! | GCATAGTTTGTGAAGAACTT+GGG | - | chr3.2:15979839-15979858 | None:intergenic | 35.0% |
| !! | AAGCTTTGAGGAAATTGAAG+TGG | - | chr3.2:15979204-15979223 | None:intergenic | 35.0% |
| !! | GTGAGAGTATCAAGAACATT+TGG | + | chr3.2:15978997-15979016 | MS.gene83823:CDS | 35.0% |
| AAAGATGGAATGAGAGGATG+AGG | - | chr3.2:15979861-15979880 | None:intergenic | 40.0% | |
| AGTAGGGTTTGTGAATGAAG+AGG | - | chr3.2:15979240-15979259 | None:intergenic | 40.0% | |
| GAACATTTGGAGGCAAAGAT+AGG | + | chr3.2:15979010-15979029 | MS.gene83823:CDS | 40.0% | |
| GATGGTGTAGTAGAAGAAGA+AGG | - | chr3.2:15979729-15979748 | None:intergenic | 40.0% | |
| GCTTCTCATGAACTTTCTCT+TGG | + | chr3.2:15979288-15979307 | MS.gene83823:CDS | 40.0% | |
| TCACTCATTCAATTCACCTC+CGG | + | chr3.2:15979884-15979903 | MS.gene83823:CDS | 40.0% | |
| ! | CTTTGAGGAAATTGAAGTGG+AGG | - | chr3.2:15979201-15979220 | None:intergenic | 40.0% |
| ! | GGCATAGTTTGTGAAGAACT+TGG | - | chr3.2:15979840-15979859 | None:intergenic | 40.0% |
| ! | TTGCACTTCCCATTTCCTTT+TGG | + | chr3.2:15979681-15979700 | MS.gene83823:CDS | 40.0% |
| AGCTTGGAGCTAAATGGTAC+CGG | - | chr3.2:15979921-15979940 | None:intergenic | 45.0% | |
| TATCCAGCAAAGCAAGAAGG+AGG | + | chr3.2:15978880-15978899 | MS.gene83823:CDS | 45.0% | |
| TCCAGAAGCTTGGAGCTAAA+TGG | - | chr3.2:15979927-15979946 | None:intergenic | 45.0% | |
| TTACCTCCTTCTTGCTTTGC+TGG | - | chr3.2:15978886-15978905 | None:intergenic | 45.0% | |
| ! | ACCATTTAGCTCCAAGCTTC+TGG | + | chr3.2:15979923-15979942 | MS.gene83823:CDS | 45.0% |
| ! | GAGCTAAATGGTACCGGAAA+AGG | - | chr3.2:15979915-15979934 | None:intergenic | 45.0% |
| CGACGAGCACTATCATCATC+CGG | - | chr3.2:15979978-15979997 | None:intergenic | 50.0% | |
| GAGCACTATCATCATCCGGT+TGG | - | chr3.2:15979974-15979993 | None:intergenic | 50.0% | |
| ! | ACCTCCGGTTAGACCTTTTC+CGG | + | chr3.2:15979899-15979918 | MS.gene83823:CDS | 50.0% |
| ! | GGTACCGGAAAAGGTCTAAC+CGG | - | chr3.2:15979906-15979925 | None:intergenic | 50.0% |
| ACCGGAAAAGGTCTAACCGG+AGG | - | chr3.2:15979903-15979922 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 15978856 | 15980004 | 15978856 | ID=MS.gene83823 |
| chr3.2 | mRNA | 15978856 | 15980004 | 15978856 | ID=MS.gene83823.t1;Parent=MS.gene83823 |
| chr3.2 | exon | 15978856 | 15980004 | 15978856 | ID=MS.gene83823.t1.exon1;Parent=MS.gene83823.t1 |
| chr3.2 | CDS | 15978856 | 15980004 | 15978856 | ID=cds.MS.gene83823.t1;Parent=MS.gene83823.t1 |
| Gene Sequence |
| Protein sequence |