AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83870.t1 MTR_6g027450 90.663 332 22 2 1 332 7 329 0.0 608
MS.gene83870.t1 MTR_6g027460 76.716 335 64 2 1 321 7 341 0.0 511
MS.gene83870.t1 MTR_7g086780 50.000 346 135 9 4 331 6 331 1.64e-98 297
MS.gene83870.t1 MTR_7g010950 47.059 187 77 5 42 225 94 261 5.93e-46 162
MS.gene83870.t1 MTR_4g082060 49.425 174 67 5 45 217 85 238 4.51e-43 154
MS.gene83870.t1 MTR_6g012450 39.754 244 118 6 41 264 96 330 1.04e-42 154
MS.gene83870.t1 MTR_3g435480 38.095 273 129 9 42 313 105 338 6.09e-42 151
MS.gene83870.t1 MTR_8g044220 33.904 292 126 9 4 262 11 268 2.33e-37 139
MS.gene83870.t1 MTR_5g041420 53.153 111 43 2 41 145 99 206 8.86e-33 124
MS.gene83870.t1 MTR_2g016030 74.194 62 16 0 75 136 39 100 1.83e-29 110
MS.gene83870.t1 MTR_5g041530 52.381 105 47 1 40 144 100 201 4.95e-29 115
MS.gene83870.t1 MTR_5g041380 46.565 131 63 3 39 167 88 213 5.86e-28 112
MS.gene83870.t1 MTR_5g041400 55.556 90 34 2 47 136 89 172 2.93e-27 110
MS.gene83870.t1 MTR_8g027295 61.905 63 24 0 78 140 19 81 2.83e-25 102
MS.gene83870.t1 MTR_4g088580 45.714 105 47 2 42 138 8 110 6.81e-25 103
MS.gene83870.t1 MTR_8g479350 48.864 88 45 0 83 170 68 155 1.23e-24 102
MS.gene83870.t1 MTR_8g068210 47.872 94 36 2 45 138 7 87 1.45e-24 102
MS.gene83870.t1 MTR_3g091820 57.746 71 30 0 67 137 27 97 1.45e-24 101
MS.gene83870.t1 MTR_8g079060 48.837 86 44 0 83 168 29 114 4.18e-24 98.6
MS.gene83870.t1 MTR_2g093220 54.545 77 34 1 62 137 18 94 4.20e-24 100
MS.gene83870.t1 MTR_4g461080 55.844 77 33 1 60 135 5 81 4.60e-24 99.8
MS.gene83870.t1 MTR_4g022370 61.290 62 24 0 76 137 75 136 4.65e-24 101
MS.gene83870.t1 MTR_4g063780 47.312 93 44 1 76 168 68 155 1.16e-23 99.8
MS.gene83870.t1 MTR_2g096740 46.465 99 52 1 70 168 64 161 1.42e-23 99.0
MS.gene83870.t1 MTR_2g096740 46.465 99 52 1 70 168 49 146 1.59e-23 98.6
MS.gene83870.t1 MTR_2g059540 73.469 49 13 0 83 131 31 79 2.39e-23 96.3
MS.gene83870.t1 MTR_4g089095 49.495 99 34 2 55 138 7 104 3.55e-23 97.8
MS.gene83870.t1 MTR_2g013370 68.966 58 17 1 81 138 44 100 8.29e-23 96.3
MS.gene83870.t1 MTR_1g077600 48.750 80 36 1 61 135 16 95 1.03e-22 95.9
MS.gene83870.t1 MTR_1g077600 48.750 80 36 1 61 135 16 95 1.17e-22 96.3
MS.gene83870.t1 MTR_4g089095 71.429 56 15 1 83 138 16 70 1.29e-22 95.5
MS.gene83870.t1 MTR_2g014060 57.812 64 27 0 71 134 13 76 2.54e-22 95.9
MS.gene83870.t1 MTR_7g059400 54.167 72 31 1 68 137 59 130 3.20e-22 95.9
MS.gene83870.t1 MTR_4g109980 66.038 53 18 0 81 133 38 90 4.06e-22 95.1
MS.gene83870.t1 MTR_8g015840 67.308 52 17 0 83 134 20 71 5.09e-22 92.8
MS.gene83870.t1 MTR_7g024670 69.091 55 16 1 84 137 78 132 1.81e-21 94.4
MS.gene83870.t1 MTR_5g031440 61.818 55 21 0 79 133 39 93 3.17e-21 93.2
MS.gene83870.t1 MTR_3g090430 54.795 73 31 1 67 137 33 105 4.17e-21 92.4
MS.gene83870.t1 MTR_2g014170 69.388 49 15 0 83 131 45 93 5.90e-21 91.7
MS.gene83870.t1 MTR_3g077750 43.810 105 51 4 37 133 7 111 6.37e-21 92.0
MS.gene83870.t1 MTR_1g056810 64.151 53 19 0 85 137 14 66 1.98e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83870.t1 AT3G47500 47.368 152 62 3 39 190 71 204 2.42e-38 142
MS.gene83870.t1 AT5G39660 57.391 115 36 2 49 150 92 206 3.94e-38 141
MS.gene83870.t1 AT5G39660 57.391 115 36 2 49 150 92 206 3.94e-38 141
MS.gene83870.t1 AT5G39660 57.391 115 36 2 49 150 92 206 3.94e-38 141
MS.gene83870.t1 AT1G26790 43.258 178 80 3 3 159 10 187 6.86e-37 136
MS.gene83870.t1 AT5G62430 45.270 148 49 4 3 148 4 121 4.66e-35 129
MS.gene83870.t1 AT2G34140 56.989 93 27 1 57 136 19 111 1.14e-33 122
MS.gene83870.t1 AT1G69570 51.754 114 53 1 71 182 120 233 5.30e-32 124
MS.gene83870.t1 AT1G29160 76.667 60 14 0 77 136 56 115 4.67e-31 115
MS.gene83870.t1 AT3G55370 55.714 70 31 0 79 148 72 141 1.10e-24 102
MS.gene83870.t1 AT3G55370 55.714 70 31 0 79 148 72 141 1.42e-24 102
MS.gene83870.t1 AT3G55370 55.714 70 31 0 79 148 117 186 2.66e-24 102
MS.gene83870.t1 AT2G28810 40.404 99 56 1 39 134 30 128 9.29e-24 99.8
MS.gene83870.t1 AT2G28810 40.404 99 56 1 39 134 47 145 1.19e-23 99.8
MS.gene83870.t1 AT5G60200 36.424 151 81 2 77 212 49 199 1.45e-23 98.2
MS.gene83870.t1 AT3G21270 69.811 53 16 0 83 135 29 81 2.20e-23 96.3
MS.gene83870.t1 AT1G51700 54.286 70 30 1 65 134 17 84 2.28e-23 95.9
MS.gene83870.t1 AT5G60850 69.091 55 17 0 83 137 51 105 2.93e-23 98.2
MS.gene83870.t1 AT4G24060 59.375 64 26 0 74 137 44 107 3.08e-23 99.0
MS.gene83870.t1 AT3G61850 61.667 60 23 0 78 137 57 116 3.81e-23 97.4
MS.gene83870.t1 AT3G61850 61.667 60 23 0 78 137 57 116 3.81e-23 97.4
MS.gene83870.t1 AT2G37590 61.017 59 23 0 79 137 85 143 4.61e-23 98.2
MS.gene83870.t1 AT3G61850 61.667 60 23 0 78 137 69 128 5.48e-23 97.4
MS.gene83870.t1 AT1G28310 66.071 56 19 0 83 138 27 82 5.75e-23 97.4
MS.gene83870.t1 AT3G61850 61.667 60 23 0 78 137 57 116 6.52e-23 97.4
MS.gene83870.t1 AT1G28310 66.071 56 19 0 83 138 51 106 6.73e-23 97.8
MS.gene83870.t1 AT3G61850 61.667 60 23 0 78 137 69 128 8.02e-23 97.4
MS.gene83870.t1 AT3G45610 56.452 62 27 0 79 140 36 97 1.36e-22 95.1
MS.gene83870.t1 AT5G65590 67.273 55 18 0 83 137 41 95 1.44e-22 96.7
MS.gene83870.t1 AT1G07640 66.071 56 18 1 83 137 21 76 2.66e-22 95.1
MS.gene83870.t1 AT3G50410 65.455 55 19 0 83 137 30 84 3.19e-22 94.4
MS.gene83870.t1 AT1G07640 66.071 56 18 1 83 137 77 132 3.71e-22 95.5
MS.gene83870.t1 AT1G07640 66.071 56 18 1 83 137 85 140 5.07e-22 95.5
MS.gene83870.t1 AT4G00940 52.778 72 30 1 71 138 52 123 5.67e-22 94.4
MS.gene83870.t1 AT4G00940 52.778 72 30 1 71 138 52 123 5.67e-22 94.4
MS.gene83870.t1 AT4G00940 52.778 72 30 1 71 138 52 123 5.67e-22 94.4
MS.gene83870.t1 AT5G66940 40.496 121 59 3 70 189 26 134 5.75e-22 92.8
MS.gene83870.t1 AT5G02460 61.017 59 23 0 79 137 91 149 6.77e-22 95.9
MS.gene83870.t1 AT1G64620 56.667 60 26 0 72 131 38 97 1.46e-21 94.4
MS.gene83870.t1 AT2G28510 66.071 56 19 0 85 140 50 105 1.46e-21 93.2
MS.gene83870.t1 AT4G38000 59.016 61 24 1 82 141 40 100 4.33e-21 90.9
MS.gene83870.t1 AT4G21050 48.718 78 38 1 63 138 2 79 8.48e-21 89.4
MS.gene83870.t1 AT5G62940 40.367 109 49 2 41 133 15 123 1.15e-20 92.0
MS.gene83870.t1 AT3G52440 45.349 86 47 0 85 170 27 112 1.34e-20 89.7
MS.gene83870.t1 AT3G52440 45.349 86 47 0 85 170 46 131 2.40e-20 89.4
MS.gene83870.t1 AT1G47655 65.306 49 17 0 83 131 29 77 2.59e-20 87.8
MS.gene83870.t1 AT2G46590 60.377 53 21 0 78 130 63 115 4.72e-20 90.1
MS.gene83870.t1 AT2G46590 60.377 53 21 0 78 130 75 127 5.46e-20 90.1
MS.gene83870.t1 AT1G21340 66.000 50 17 0 85 134 40 89 9.33e-20 87.8
MS.gene83870.t1 AT4G21040 54.386 57 26 0 85 141 27 83 3.44e-16 77.0
MS.gene83870.t1 AT4G21080 52.632 57 27 0 85 141 27 83 9.75e-16 76.3

Find 57 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTCTCTTGTGGTTTCT+AGG 0.197262 6.1:+9549878 None:intergenic
AATGGCATTGTCCTAAAATT+TGG 0.232669 6.1:-9549947 MS.gene83870:CDS
AATTTGTTCCTGAATCATTT+AGG 0.243494 6.1:-9549559 MS.gene83870:CDS
GTTAATAATTGTAGAGAAAA+TGG 0.253304 6.1:-9549845 MS.gene83870:CDS
GTCGGAAGTGTCATAGATAT+TGG 0.311203 6.1:-9550144 MS.gene83870:CDS
TTCAGGTGCTCAAATAATAA+TGG 0.321797 6.1:-9549965 MS.gene83870:CDS
ACATCGAATCGTTAGATTCA+TGG 0.328881 6.1:+9549906 None:intergenic
GATCCATTCCTAAATGATTC+AGG 0.331263 6.1:+9549551 None:intergenic
AAGCACTGTGGAAGATAATA+TGG 0.348391 6.1:-9550299 MS.gene83870:CDS
TTGTTCAAGCTTTGATTCAA+TGG 0.349711 6.1:+9549695 None:intergenic
ATGCAAATGTGTAACCCTTA+TGG 0.378243 6.1:-9549647 MS.gene83870:CDS
AGGAATGGATCAGTTTCAAT+AGG 0.385406 6.1:-9549539 MS.gene83870:CDS
GCTCTTTGGAAAGAAGATTC+AGG 0.390549 6.1:-9551558 MS.gene83870:CDS
TATCTGAATCCGAACATAAT+AGG 0.400322 6.1:-9549760 MS.gene83870:CDS
GGACATTGAACAATCTTGTC+AGG 0.428555 6.1:+9550238 None:intergenic
CCTGAAAACCACAGCAGATT+CGG 0.430545 6.1:+9549982 None:intergenic
GTCTGAAGATGTTCGGCATA+TGG 0.438201 6.1:+9549597 None:intergenic
GAACTAGGATCAACGCCATA+AGG 0.439532 6.1:+9549632 None:intergenic
AGAAACGTTCCTTTCGGTGC+AGG 0.439748 6.1:-9550103 MS.gene83870:CDS
GACGTTACTTTCAGAATTTG+AGG 0.441263 6.1:+9550012 None:intergenic
CTTGAACAATGTTCCTTCCA+TGG 0.451475 6.1:-9549681 MS.gene83870:CDS
CGCCACATGATTGTAGCTTC+CGG 0.453024 6.1:-9550046 MS.gene83870:CDS
GTGTCGAAACTGTTGCATCT+TGG 0.465726 6.1:+9550217 None:intergenic
AGAGCTACCCTGCATCTTCA+TGG 0.465844 6.1:-9549724 MS.gene83870:CDS
TTCCTTTCGGTGCAGGGAGA+CGG 0.475764 6.1:-9550096 MS.gene83870:CDS
ACTTACCATGGTTGAAGAGT+TGG 0.478391 6.1:+9551535 None:intergenic
ATGTTCGGTCTGAAGATGTT+CGG 0.485708 6.1:+9549590 None:intergenic
CATTGTCCTAAAATTTGGTC+CGG 0.488780 6.1:-9549942 MS.gene83870:CDS
TGTGTATCTTCTGTGACAAA+TGG 0.500907 6.1:-9549803 MS.gene83870:CDS
GGAATCATCCATGAAGATGC+AGG 0.501713 6.1:+9549716 None:intergenic
AACGTTTCTCATTGTTCCAC+CGG 0.503306 6.1:+9550117 None:intergenic
ACAATGAGAAACGTTCCTTT+CGG 0.504607 6.1:-9550109 MS.gene83870:CDS
TTGCATCAATATTTCTCTTG+TGG 0.508819 6.1:+9549870 None:intergenic
ACAAATTGCAAGCCAATGTT+CGG 0.513658 6.1:+9549575 None:intergenic
GTTCCTGAATCATTTAGGAA+TGG 0.513930 6.1:-9549554 MS.gene83870:CDS
TGGCACCACTGCATTGAACT+AGG 0.522209 6.1:+9549617 None:intergenic
GAAACGTTCCTTTCGGTGCA+GGG 0.532355 6.1:-9550102 MS.gene83870:CDS
TGTCATAGATATTGGACTGC+CGG 0.542196 6.1:-9550136 MS.gene83870:CDS
CTCTTCTACCGAATCTGCTG+TGG 0.544865 6.1:-9549990 MS.gene83870:CDS
TTCCGTCTCCCTGCACCGAA+AGG 0.555844 6.1:+9550094 None:intergenic
ATTGAAGATTGAACCATGGA+AGG 0.561855 6.1:+9549668 None:intergenic
AACTAGGATCAACGCCATAA+GGG 0.563985 6.1:+9549633 None:intergenic
TGTCACAGAAGATACACATA+AGG 0.564721 6.1:+9549808 None:intergenic
AACATCTTCAGACCGAACAT+TGG 0.582195 6.1:-9549587 MS.gene83870:CDS
TAGCTAGTAGTAGATGAAGA+AGG 0.592040 6.1:+9549497 None:intergenic
ATTTGAGGTTGAAATTCCAC+CGG 0.595342 6.1:+9550027 None:intergenic
TCAGGCCAACTCTTCAACCA+TGG 0.613442 6.1:-9551540 MS.gene83870:intron
GTGACAAATGGTTATACTCG+AGG 0.618192 6.1:-9549791 MS.gene83870:CDS
CATAGATATTGGACTGCCGG+TGG 0.627706 6.1:-9550133 MS.gene83870:CDS
GAATCATCCATGAAGATGCA+GGG 0.636010 6.1:+9549717 None:intergenic
TTGATCCTAGTTCAATGCAG+TGG 0.644085 6.1:-9549622 MS.gene83870:CDS
TTGCATTGAAGATTGAACCA+TGG 0.644235 6.1:+9549664 None:intergenic
CACATGATTGTAGCTTCCGG+TGG 0.649268 6.1:-9550043 MS.gene83870:CDS
TGCAGTAACTCAAAGCACAA+AGG 0.653363 6.1:-9550400 MS.gene83870:CDS
ACTACAATGTCAGTCAACCT+CGG 0.657312 6.1:-9550174 MS.gene83870:CDS
CACCGGAAGCTACAATCATG+TGG 0.658948 6.1:+9550044 None:intergenic
AAAAGTTAACACAAGCACTG+TGG 0.719835 6.1:-9550311 MS.gene83870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACTATAAAATTCCTTA+TGG + chr6.1:9550506-9550525 None:intergenic 15.0%
!! AATTTAATAAATTGAGACTA+AGG - chr6.1:9549825-9549844 MS.gene83870:CDS 15.0%
!! ATATTCAAAAAACAAAATCA+CGG + chr6.1:9550589-9550608 None:intergenic 15.0%
!! GAAAATATAGACAATATATT+TGG - chr6.1:9549884-9549903 MS.gene83870:CDS 15.0%
!! TTCTAAATTAACATGAAAAA+TGG + chr6.1:9549598-9549617 None:intergenic 15.0%
!!! AGAATTAAGAAATTTTTAAG+AGG + chr6.1:9550112-9550131 None:intergenic 15.0%
!!! TAATACTCTTCAAATTTTAA+AGG + chr6.1:9549679-9549698 None:intergenic 15.0%
!! GTTAATAATTGTAGAGAAAA+TGG - chr6.1:9551235-9551254 MS.gene83870:intron 20.0%
!! TATTAAATCATACAATTGCT+TGG - chr6.1:9550049-9550068 MS.gene83870:CDS 20.0%
!! TGTTTCTTCTAATATCAAAT+TGG - chr6.1:9549930-9549949 MS.gene83870:CDS 20.0%
!!! AACATCAACTAAGTTTTTTT+AGG - chr6.1:9550398-9550417 MS.gene83870:CDS 20.0%
!!! ACTATAATTCATGATGATTT+TGG + chr6.1:9550469-9550488 None:intergenic 20.0%
!!! ATCATGAATTATAGTTCTAA+TGG - chr6.1:9550474-9550493 MS.gene83870:intron 20.0%
!!! GAATCTATTTTTGTGAAATT+GGG - chr6.1:9549973-9549992 MS.gene83870:CDS 20.0%
! AAAACCAATAATCGTAAACA+CGG - chr6.1:9550425-9550444 MS.gene83870:intron 25.0%
! AAGTTATCCAGAATAAAGTT+TGG + chr6.1:9550626-9550645 None:intergenic 25.0%
! GAGTTTCAACAAAATTATGA+TGG + chr6.1:9550262-9550281 None:intergenic 25.0%
! TAAGATATGATAACTTACCA+TGG + chr6.1:9549560-9549579 None:intergenic 25.0%
!! AATTTGTTCCTGAATCATTT+AGG - chr6.1:9551521-9551540 MS.gene83870:intron 25.0%
!! ATAATTCATGATGATTTTGG+TGG + chr6.1:9550466-9550485 None:intergenic 25.0%
!! ATAGTATAATTTGTCTCGAA+TGG - chr6.1:9550222-9550241 MS.gene83870:CDS 25.0%
!!! ATTTGGTTCTTTTCTTCAAA+GGG - chr6.1:9549901-9549920 MS.gene83870:CDS 25.0%
!!! CGAATCTATTTTTGTGAAAT+TGG - chr6.1:9549972-9549991 MS.gene83870:CDS 25.0%
!!! GCAAGTAGTTGATTTTATAT+AGG - chr6.1:9549862-9549881 MS.gene83870:CDS 25.0%
!!! TAGTTTTGACCTATTATGTT+CGG + chr6.1:9551332-9551351 None:intergenic 25.0%
!!! TATTTGGTTCTTTTCTTCAA+AGG - chr6.1:9549900-9549919 MS.gene83870:CDS 25.0%
!!! TTCTCAATGTTTTGAATATG+AGG + chr6.1:9550716-9550735 None:intergenic 25.0%
AATGGCATTGTCCTAAAATT+TGG - chr6.1:9551133-9551152 MS.gene83870:intron 30.0%
ATATTTCTCTTGTGGTTTCT+AGG + chr6.1:9551205-9551224 None:intergenic 30.0%
TAAAGTTTGGCAACAAACTT+TGG + chr6.1:9550613-9550632 None:intergenic 30.0%
TATCTGAATCCGAACATAAT+AGG - chr6.1:9551320-9551339 MS.gene83870:intron 30.0%
TTCAGGTGCTCAAATAATAA+TGG - chr6.1:9551115-9551134 MS.gene83870:intron 30.0%
TTGCATCAATATTTCTCTTG+TGG + chr6.1:9551213-9551232 None:intergenic 30.0%
TTTGTTGCCAAACTTTATTC+TGG - chr6.1:9550616-9550635 MS.gene83870:intron 30.0%
! CTTGAATTTTATGATTGCCT+TGG + chr6.1:9550089-9550108 None:intergenic 30.0%
! TTCTAATGGTTTGTACCATA+AGG - chr6.1:9550488-9550507 MS.gene83870:intron 30.0%
! TTGTTCAAGCTTTGATTCAA+TGG + chr6.1:9551388-9551407 None:intergenic 30.0%
!! GATTTTAGTATCATGCTCTT+TGG - chr6.1:9549508-9549527 MS.gene83870:CDS 30.0%
AATTTGTCTCGAATGGTGAA+AGG - chr6.1:9550229-9550248 MS.gene83870:CDS 35.0%
ACAAATTGCAAGCCAATGTT+CGG + chr6.1:9551508-9551527 None:intergenic 35.0%
ACAATGAGAAACGTTCCTTT+CGG - chr6.1:9550971-9550990 MS.gene83870:intron 35.0%
ACATCGAATCGTTAGATTCA+TGG + chr6.1:9551177-9551196 None:intergenic 35.0%
AGGAATGGATCAGTTTCAAT+AGG - chr6.1:9551541-9551560 MS.gene83870:CDS 35.0%
ATGCAAATGTGTAACCCTTA+TGG - chr6.1:9551433-9551452 MS.gene83870:intron 35.0%
ATTGAAGATTGAACCATGGA+AGG + chr6.1:9551415-9551434 None:intergenic 35.0%
CATTGTCCTAAAATTTGGTC+CGG - chr6.1:9551138-9551157 MS.gene83870:intron 35.0%
GATCCATTCCTAAATGATTC+AGG + chr6.1:9551532-9551551 None:intergenic 35.0%
GTTCCTGAATCATTTAGGAA+TGG - chr6.1:9551526-9551545 MS.gene83870:intron 35.0%
TAGCTAGTAGTAGATGAAGA+AGG + chr6.1:9551586-9551605 None:intergenic 35.0%
TGTCACAGAAGATACACATA+AGG + chr6.1:9551275-9551294 None:intergenic 35.0%
TGTGTATCTTCTGTGACAAA+TGG - chr6.1:9551277-9551296 MS.gene83870:intron 35.0%
TTGCATTGAAGATTGAACCA+TGG + chr6.1:9551419-9551438 None:intergenic 35.0%
! AAAAGTTAACACAAGCACTG+TGG - chr6.1:9550769-9550788 MS.gene83870:intron 35.0%
! AAGCACTGTGGAAGATAATA+TGG - chr6.1:9550781-9550800 MS.gene83870:intron 35.0%
! ATTTGAGGTTGAAATTCCAC+CGG + chr6.1:9551056-9551075 None:intergenic 35.0%
! CATTTTCCGGACCAAATTTT+AGG + chr6.1:9551147-9551166 None:intergenic 35.0%
! GACGTTACTTTCAGAATTTG+AGG + chr6.1:9551071-9551090 None:intergenic 35.0%
! TCATGGAGAAATGCATTTTC+CGG + chr6.1:9551160-9551179 None:intergenic 35.0%
!!! CAATCTTGTCAGGTTTTTTG+AGG + chr6.1:9550835-9550854 None:intergenic 35.0%
AACATCTTCAGACCGAACAT+TGG - chr6.1:9551493-9551512 MS.gene83870:intron 40.0%
AACGTTTCTCATTGTTCCAC+CGG + chr6.1:9550966-9550985 None:intergenic 40.0%
AACTAGGATCAACGCCATAA+GGG + chr6.1:9551450-9551469 None:intergenic 40.0%
ACTACAATGTCAGTCAACCT+CGG - chr6.1:9550906-9550925 MS.gene83870:intron 40.0%
ACTTACCATGGTTGAAGAGT+TGG + chr6.1:9549548-9549567 None:intergenic 40.0%
ATGTTCGGTCTGAAGATGTT+CGG + chr6.1:9551493-9551512 None:intergenic 40.0%
CTTGAACAATGTTCCTTCCA+TGG - chr6.1:9551399-9551418 MS.gene83870:intron 40.0%
GAATCATCCATGAAGATGCA+GGG + chr6.1:9551366-9551385 None:intergenic 40.0%
GGACATTGAACAATCTTGTC+AGG + chr6.1:9550845-9550864 None:intergenic 40.0%
GTCACCGTGTTTACGATTAT+TGG + chr6.1:9550432-9550451 None:intergenic 40.0%
GTGACAAATGGTTATACTCG+AGG - chr6.1:9551289-9551308 MS.gene83870:intron 40.0%
TGCAGTAACTCAAAGCACAA+AGG - chr6.1:9550680-9550699 MS.gene83870:intron 40.0%
TGTCATAGATATTGGACTGC+CGG - chr6.1:9550944-9550963 MS.gene83870:intron 40.0%
TTGATCCTAGTTCAATGCAG+TGG - chr6.1:9551458-9551477 MS.gene83870:intron 40.0%
! GCTCTTTGGAAAGAAGATTC+AGG - chr6.1:9549522-9549541 MS.gene83870:CDS 40.0%
!! GTCGGAAGTGTCATAGATAT+TGG - chr6.1:9550936-9550955 MS.gene83870:intron 40.0%
!!! TGGTGCTCTTGTTTTTTCCA+AGG - chr6.1:9550069-9550088 MS.gene83870:CDS 40.0%
CCTGAAAACCACAGCAGATT+CGG + chr6.1:9551101-9551120 None:intergenic 45.0%
GAACTAGGATCAACGCCATA+AGG + chr6.1:9551451-9551470 None:intergenic 45.0%
GGAATCATCCATGAAGATGC+AGG + chr6.1:9551367-9551386 None:intergenic 45.0%
GTCTGAAGATGTTCGGCATA+TGG + chr6.1:9551486-9551505 None:intergenic 45.0%
GTGTCGAAACTGTTGCATCT+TGG + chr6.1:9550866-9550885 None:intergenic 45.0%
! GTCAACCTCGGCATTTTTGT+CGG - chr6.1:9550918-9550937 MS.gene83870:intron 45.0%
!! TGTATATAATATAATATATA+AGG - chr6.1:9550289-9550308 MS.gene83870:CDS 5.0%
!!! TATTTTTTAACATATTTATT+TGG - chr6.1:9549713-9549732 MS.gene83870:CDS 5.0%
AGAGCTACCCTGCATCTTCA+TGG - chr6.1:9551356-9551375 MS.gene83870:intron 50.0%
ATCGTAAACACGGTGACACG+TGG - chr6.1:9550435-9550454 MS.gene83870:intron 50.0%
CACATGATTGTAGCTTCCGG+TGG - chr6.1:9551037-9551056 MS.gene83870:intron 50.0%
CACCGGAAGCTACAATCATG+TGG + chr6.1:9551039-9551058 None:intergenic 50.0%
CACTTCCGACAAAAATGCCG+AGG + chr6.1:9550926-9550945 None:intergenic 50.0%
CATAGATATTGGACTGCCGG+TGG - chr6.1:9550947-9550966 MS.gene83870:intron 50.0%
CGCCACATGATTGTAGCTTC+CGG - chr6.1:9551034-9551053 MS.gene83870:intron 50.0%
CTCTTCTACCGAATCTGCTG+TGG - chr6.1:9551090-9551109 MS.gene83870:intron 50.0%
TCAGGCCAACTCTTCAACCA+TGG - chr6.1:9549540-9549559 MS.gene83870:CDS 50.0%
TGGCACCACTGCATTGAACT+AGG + chr6.1:9551466-9551485 None:intergenic 50.0%
! AGAAACGTTCCTTTCGGTGC+AGG - chr6.1:9550977-9550996 MS.gene83870:intron 50.0%
! CCGAATCTGCTGTGGTTTTC+AGG - chr6.1:9551098-9551117 MS.gene83870:intron 50.0%
! GAAACGTTCCTTTCGGTGCA+GGG - chr6.1:9550978-9550997 MS.gene83870:intron 50.0%
! TTCCTTTCGGTGCAGGGAGA+CGG - chr6.1:9550984-9551003 MS.gene83870:intron 55.0%
TTCCGTCTCCCTGCACCGAA+AGG + chr6.1:9550989-9551008 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 9549496 9551606 9549496 ID=MS.gene83870
chr6.1 mRNA 9549496 9551606 9549496 ID=MS.gene83870.t1;Parent=MS.gene83870
chr6.1 exon 9551541 9551606 9551541 ID=MS.gene83870.t1.exon1;Parent=MS.gene83870.t1
chr6.1 CDS 9551541 9551606 9551541 ID=cds.MS.gene83870.t1;Parent=MS.gene83870.t1
chr6.1 exon 9549496 9550428 9549496 ID=MS.gene83870.t1.exon2;Parent=MS.gene83870.t1
chr6.1 CDS 9549496 9550428 9549496 ID=cds.MS.gene83870.t1;Parent=MS.gene83870.t1
Gene Sequence

>MS.gene83870

ATGTGTGTTAAAGATTTTAGTATCATGCTCTTTGGAAAGAAGATTCAGGCCAACTCTTCAACCATGGTAAGTTATCATATCTTATATCACACTCAATAACCATTTTTCATGTTAATTTAGAAAGTTATGATTTAATTAGTTTGTTTGTCATGTTGTTAGAATATTTTATAAGCTTTAAAACCTTTAAAATTTGAAGAGTATTAATGCTAAATGATTTTATTTTTTAACATATTTATTTGGTAATAAAATTAAGAATGAATGAATTCTAACAATTTTTTTTTAAACTTATAGTTGAGAATTTATGTTTATGTCAAATACATACATAAATGAATTTAATAAATTGAGACTAAGGTTTGTGAAGCTTCTGCAAGTAGTTGATTTTATATAGGAAAATATAGACAATATATTTGGTTCTTTTCTTCAAAGGGTAGCTTTGTTTCTTCTAATATCAAATTGGATTTATTACATTTTTTATACGAATCTATTTTTGTGAAATTGGGTTGTATCTGAAAGAAGTTTAACATGAAAGTTGTTTCATTTTGATTGAAGTATGTATTAAATCATACAATTGCTTGGTGCTCTTGTTTTTTCCAAGGCAATCATAAAATTCAAGCCTCTTAAAAATTTCTTAATTCTTTTGATTTTAAGTATATATTCAGTTGCTAAAAAAATACATATTCAGTTCAATTAATGCTTAATCAATTGCAAATAGATTTTTCTTTATAAATAGTATAATTTGTCTCGAATGGTGAAAGGCACGACACCATCATAATTTTGTTGAAACTCTAAAATATGTATATAATATAATATATAAGGCACGACACCATCATAATTTTGTTGAAACTCTAAAATATGTATATAATATAATATATCAAAGATTAATGACACATGAATAGAAAACAAACATCAACTAAGTTTTTTTAGGTGACAAAACCAATAATCGTAAACACGGTGACACGTGGTCATTCCACCAAAATCATCATGAATTATAGTTCTAATGGTTTGTACCATAAGGAATTTTATAGTTATTTTTTTTATTTTTTTATGTGAAAATCGAACATAACATGCATGATGATTAATTGCATATGTTCCGTGATTTTGTTTTTTGAATATTCCAAAGTTTGTTGCCAAACTTTATTCTGGATAACTTATCACTAATTATGATTTATAATATATAGAATTCTTGCAGTAACTCAAAGCACAAAGGAAATGAAATGCCTCATATTCAAAACATTGAGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTAACACAAGCACTGTGGAAGATAATATGGAAACTAGCAGCACAGATCAAGACAAAGTCCTCAAAAAACCTGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCGACACGAAATTTTGTTATTTCAATAACTACAATGTCAGTCAACCTCGGCATTTTTGTCGGAAGTGTCATAGATATTGGACTGCCGGTGGAACAATGAGAAACGTTCCTTTCGGTGCAGGGAGACGGAAGAACAAGCAGATAGCTTCTCAATATCGCCACATGATTGTAGCTTCCGGTGGAATTTCAACCTCAAATTCTGAAAGTAACGTCTCTTCTACCGAATCTGCTGTGGTTTTCAGGTGCTCAAATAATAATGGCATTGTCCTAAAATTTGGTCCGGAAAATGCATTTCTCCATGAATCTAACGATTCGATGTTTAATCCTAGAAACCACAAGAGAAATATTGATGCAAGTGTTAATAATTGTAGAGAAAATGGAGATGAAGAATCATCCTTATGTGTATCTTCTGTGACAAATGGTTATACTCGAGGAAACGAGTTATCTGAATCCGAACATAATAGGTCAAAACTATTGCAGAGCTACCCTGCATCTTCATGGATGATTCCATTGAATCAAAGCTTGAACAATGTTCCTTCCATGGTTCAATCTTCAATGCAAATGTGTAACCCTTATGGCGTTGATCCTAGTTCAATGCAGTGGTGCCATATGCCGAACATCTTCAGACCGAACATTGGCTTGCAATTTGTTCCTGAATCATTTAGGAATGGATCAGTTTCAATAGGTTCAAATAATTGTTTTTCGCCTTCTTCATCTACTACTAGCTAG
Protein sequence

>MS.gene83870.t1

MCVKDFSIMLFGKKIQANSSTMNSCSNSKHKGNEMPHIQNIEKSKNSSNEENESKVNTSTVEDNMETSSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVSQPRHFCRKCHRYWTAGGTMRNVPFGAGRRKNKQIASQYRHMIVASGGISTSNSESNVSSTESAVVFRCSNNNGIVLKFGPENAFLHESNDSMFNPRNHKRNIDASVNNCRENGDEESSLCVSSVTNGYTRGNELSESEHNRSKLLQSYPASSWMIPLNQSLNNVPSMVQSSMQMCNPYGVDPSSMQWCHMPNIFRPNIGLQFVPESFRNGSVSIGSNNCFSPSSSTTS