AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83890.t1 MTR_7g446520 41.089 202 94 3 6 198 47 232 2.51e-38 146
MS.gene83890.t1 MTR_0645s0010 64.000 100 33 1 345 444 1 97 7.04e-35 129
MS.gene83890.t1 MTR_6g022070 35.758 165 106 0 267 431 1 165 1.18e-31 127
MS.gene83890.t1 MTR_8g035530 76.316 76 17 1 28 102 1 76 1.46e-31 118
MS.gene83890.t1 MTR_7g028855 44.079 152 80 1 33 179 112 263 3.18e-31 128
MS.gene83890.t1 MTR_7g446480 54.545 88 40 0 113 200 140 227 4.90e-27 113
MS.gene83890.t1 MTR_7g446510 53.409 88 41 0 113 200 155 242 4.03e-25 107
MS.gene83890.t1 MTR_5g076070 28.780 205 137 4 2 198 12 215 3.84e-24 103
MS.gene83890.t1 MTR_3g080590 54.651 86 39 0 5 90 69 154 1.52e-23 98.2
MS.gene83890.t1 MTR_1g070355 30.857 175 113 2 41 210 74 245 5.39e-21 98.2
MS.gene83890.t1 MTR_6g022080 29.240 171 114 2 34 198 78 247 1.01e-20 92.8
MS.gene83890.t1 MTR_0402s0040 32.500 160 103 3 45 200 30 188 7.97e-18 87.8
MS.gene83890.t1 MTR_6g051425 27.326 172 116 3 40 203 16 186 3.05e-14 75.5
MS.gene83890.t1 MTR_7g061980 33.945 109 66 2 44 148 13 119 9.66e-14 68.9
MS.gene83890.t1 MTR_5g015480 33.077 130 80 3 45 167 60 189 3.92e-13 70.9
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 59 158 2.44e-12 67.8
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 59 158 2.69e-12 67.8
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 79 178 4.17e-12 67.8
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 79 178 4.49e-12 67.4
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 77 176 4.53e-12 67.4
MS.gene83890.t1 MTR_2g098920 35.514 107 67 2 39 143 78 184 5.32e-12 67.4
MS.gene83890.t1 MTR_4g067290 35.000 100 63 2 44 141 119 218 5.67e-12 67.8
MS.gene83890.t1 MTR_1g008290 30.000 120 73 3 81 200 1 109 1.87e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83890.t1 AT4G38180 29.392 609 337 13 2 519 32 638 8.90e-75 259
MS.gene83890.t1 AT3G22170 26.165 558 328 14 42 520 71 623 2.51e-52 196
MS.gene83890.t1 AT3G22170 26.165 558 328 14 42 520 71 623 2.51e-52 196
MS.gene83890.t1 AT4G38170 27.300 337 226 4 196 515 65 399 4.85e-49 182
MS.gene83890.t1 AT2G27110 30.581 327 207 4 206 515 111 434 6.60e-48 182
MS.gene83890.t1 AT2G27110 30.581 327 207 4 206 515 256 579 1.36e-47 182
MS.gene83890.t1 AT2G27110 30.581 327 207 4 206 515 256 579 1.36e-47 182
MS.gene83890.t1 AT4G15090 29.358 327 212 4 211 520 290 614 6.07e-47 180
MS.gene83890.t1 AT4G15090 29.358 327 212 4 211 520 290 614 6.07e-47 180
MS.gene83890.t1 AT4G15090 29.358 327 212 4 211 520 290 614 6.07e-47 180
MS.gene83890.t1 AT4G15090 29.358 327 212 4 211 520 290 614 6.07e-47 180
MS.gene83890.t1 AT4G15090 29.358 327 212 4 211 520 290 614 6.07e-47 180
MS.gene83890.t1 AT1G76320 25.777 547 329 14 45 516 1 545 1.62e-46 178
MS.gene83890.t1 AT1G76320 25.777 547 329 14 45 516 1 545 1.62e-46 178
MS.gene83890.t1 AT1G76320 25.777 547 329 14 45 516 1 545 1.92e-46 178
MS.gene83890.t1 AT1G76320 25.777 547 329 14 45 516 1 545 2.21e-46 177
MS.gene83890.t1 AT5G18960 28.075 374 248 6 205 563 408 775 2.69e-46 178
MS.gene83890.t1 AT5G18960 28.075 374 248 6 205 563 408 775 2.69e-46 178
MS.gene83890.t1 AT3G06250 27.540 374 250 6 205 563 384 751 4.69e-45 174
MS.gene83890.t1 AT3G06250 27.540 374 250 6 205 563 384 751 4.69e-45 174
MS.gene83890.t1 AT3G06250 27.540 374 250 6 205 563 384 751 4.69e-45 174
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.39e-44 173
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.39e-44 173
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.64e-44 172
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.66e-44 172
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.66e-44 172
MS.gene83890.t1 AT2G32250 25.338 517 331 12 44 512 41 550 1.66e-44 172
MS.gene83890.t1 AT2G32250 25.194 516 331 12 45 512 1 509 5.95e-44 171
MS.gene83890.t1 AT2G32250 25.194 516 331 12 45 512 1 509 6.03e-44 171
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 24 572 2.15e-43 169
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 24 572 2.15e-43 169
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 24 572 2.66e-43 169
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 24 572 3.29e-43 169
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 24 572 3.29e-43 169
MS.gene83890.t1 AT4G19990 24.368 554 347 14 44 530 38 586 3.42e-43 168
MS.gene83890.t1 AT1G80010 27.746 346 225 6 206 528 331 674 5.37e-42 164
MS.gene83890.t1 AT1G52520 26.647 334 217 5 207 515 308 638 5.08e-39 155
MS.gene83890.t1 AT4G19990 23.745 518 324 13 79 530 3 515 1.13e-38 154
MS.gene83890.t1 AT5G28530 23.016 504 347 10 44 514 58 553 8.80e-37 147
MS.gene83890.t1 AT5G28530 22.727 506 350 10 44 514 58 557 2.19e-36 146
MS.gene83890.t1 AT1G10240 24.768 323 216 8 209 512 290 604 5.42e-27 117
MS.gene83890.t1 AT1G10240 29.518 166 108 5 44 200 51 216 1.46e-11 68.6
MS.gene83890.t1 AT1G10240 24.768 323 216 8 209 512 290 604 5.42e-27 117
MS.gene83890.t1 AT1G10240 29.518 166 108 5 44 200 51 216 1.46e-11 68.6
MS.gene83890.t1 AT5G28530 22.118 321 228 5 208 514 304 616 1.97e-21 100
MS.gene83890.t1 AT5G28530 27.439 164 112 3 44 200 58 221 2.48e-11 67.8
MS.gene83890.t1 AT5G28530 22.118 321 228 5 208 514 304 616 1.97e-21 100
MS.gene83890.t1 AT5G28530 27.439 164 112 3 44 200 58 221 2.48e-11 67.8
MS.gene83890.t1 AT5G28530 21.672 323 231 5 208 514 304 620 4.86e-21 99.0
MS.gene83890.t1 AT5G28530 27.439 164 112 3 44 200 58 221 2.62e-11 67.8
MS.gene83890.t1 AT3G07500 36.184 152 83 6 16 157 3 150 5.02e-15 75.5
MS.gene83890.t1 AT3G59470 35.514 107 67 2 39 143 68 174 3.55e-12 67.8
MS.gene83890.t1 AT3G59470 35.514 107 67 2 39 143 68 174 3.55e-12 67.8
MS.gene83890.t1 AT3G59470 35.514 107 67 2 39 143 80 186 4.20e-12 67.8
MS.gene83890.t1 AT4G12850 36.522 115 68 3 39 152 9 119 1.49e-11 63.5
MS.gene83890.t1 AT4G12850 38.235 102 61 2 39 139 9 109 1.85e-11 63.2
MS.gene83890.t1 AT4G12850 35.246 122 74 3 39 156 9 129 7.80e-11 62.4

Find 144 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATAAGTGGAGAGTTTC+TGG 0.119642 6.1:+9174915 MS.gene83890:CDS
GAAAAGTCTTCCAAGAATTT+TGG 0.130067 6.1:-9175637 None:intergenic
TGTTAGAACCTGTCATATTT+TGG 0.145212 6.1:+9175055 MS.gene83890:CDS
AATTGTCTGCTCGTGGAAAT+TGG 0.180295 6.1:-9177379 None:intergenic
GTCTCATGGCACAAATAATA+TGG 0.183652 6.1:-9176242 None:intergenic
GTAATCATCCTTTGCTGATT+TGG 0.196309 6.1:-9176313 None:intergenic
CATCTTTCCATGTTACATTT+TGG 0.217563 6.1:-9177217 None:intergenic
CTCTATTTATGTTAGTTTAT+GGG 0.247034 6.1:+9177542 MS.gene83890:intron
AACGTAGATGCAATTTGATT+TGG 0.260815 6.1:-9177317 None:intergenic
AAAATTGATGCACCTTGATT+TGG 0.276898 6.1:-9177353 None:intergenic
TCACTCAATTGACGGTTCTT+AGG 0.285255 6.1:-9174993 None:intergenic
AAGACCAATCCATCTGTTAT+TGG 0.288862 6.1:+9176528 MS.gene83890:CDS
ACGAGGGGCACCTTTGGCCT+TGG 0.312466 6.1:-9176565 None:intergenic
CATTCAAGTTCGGTTGGATA+TGG 0.312603 6.1:+9177410 MS.gene83890:CDS
CCTTTGGCCTTGGCTTTGAT+AGG 0.324333 6.1:-9176555 None:intergenic
ATACAGGCAGAAAGAGTTAA+TGG 0.326284 6.1:+9175930 MS.gene83890:CDS
TTGGCGCCGGTAAAATAATT+AGG 0.326324 6.1:-9177254 None:intergenic
TTGCTTGTGATTCGAGAGTT+TGG 0.328361 6.1:-9177624 None:intergenic
ATTGTCTGCTCGTGGAAATT+GGG 0.337604 6.1:-9177378 None:intergenic
CAAAGACGATGCAACGAGTT+TGG 0.347736 6.1:-9175571 None:intergenic
TGTGAAGAATCCAAAATTCT+TGG 0.353566 6.1:+9175627 MS.gene83890:CDS
TGAAGAAGGAAAAGAGGATA+TGG 0.353695 6.1:+9174611 MS.gene83890:CDS
TGGATACTTACAAGAAGATT+AGG 0.354642 6.1:+9174631 MS.gene83890:CDS
TCCAACCCGTTATGCTCATT+TGG 0.356553 6.1:+9174968 MS.gene83890:CDS
CTGCTTACGAGGGGCACCTT+TGG 0.363102 6.1:-9176571 None:intergenic
GAAAGGAGGTCATGAGAGTC+TGG 0.365097 6.1:+9175094 MS.gene83890:CDS
GCAATTTGATTTGGAAATTG+AGG 0.377041 6.1:-9177308 None:intergenic
AAGATCGGAACACTTTGAAT+TGG 0.379246 6.1:-9177284 None:intergenic
GCAAACGATGGAGACATAAA+TGG 0.387588 6.1:+9174555 MS.gene83890:CDS
CCATCAGTAACCACCCCTTT+AGG 0.408261 6.1:-9175511 None:intergenic
AAGTTTAAGATGAATAGATT+TGG 0.423772 6.1:+9176123 MS.gene83890:intron
ATAGCCTCTTTATAATCATC+TGG 0.427795 6.1:-9176444 None:intergenic
TGTATCATAAACAGCCTAAA+GGG 0.435243 6.1:+9175497 MS.gene83890:CDS
GTATCTAGTTTATCTTGATA+AGG 0.436094 6.1:+9176161 MS.gene83890:CDS
TCTGATAAAGCCCTTGTTGA+TGG 0.437123 6.1:+9175017 MS.gene83890:CDS
TATCAGATTCACTCAATTGA+CGG 0.439464 6.1:-9175001 None:intergenic
TGTAGACAGTTTGAACGGAT+TGG 0.441359 6.1:+9176207 MS.gene83890:CDS
CTGATAGTCTAATTTACAAA+AGG 0.446227 6.1:+9176286 MS.gene83890:CDS
GGATACTTACAAGAAGATTA+GGG 0.465987 6.1:+9174632 MS.gene83890:CDS
ACAATTTATCAGACAATACA+TGG 0.467170 6.1:+9175728 MS.gene83890:CDS
CAAGAAGATTAGGGAATTGA+CGG 0.467663 6.1:+9174641 MS.gene83890:CDS
AGGAACCAAATGAGCATAAC+GGG 0.471013 6.1:-9174973 None:intergenic
ACTCAAAATTATCATCACTT+TGG 0.472391 6.1:-9177659 None:intergenic
CAATAAAAGAAGATCAAAAC+AGG 0.473627 6.1:+9176909 MS.gene83890:CDS
ATTTATGTCTCCATCGTTTG+CGG 0.473976 6.1:-9174553 None:intergenic
TTTCCCATCACATTCAAGTT+CGG 0.475541 6.1:+9177400 MS.gene83890:CDS
AATGGTGTGTTTAATGAAGA+AGG 0.477078 6.1:+9174597 MS.gene83890:CDS
GAAGATTTAGCCAGCGGTAA+TGG 0.477870 6.1:+9174579 MS.gene83890:CDS
TAAATGTTGATACTAATAAG+TGG 0.482914 6.1:+9174904 MS.gene83890:CDS
CCATCACATTCAAGTTCGGT+TGG 0.483093 6.1:+9177404 MS.gene83890:CDS
GTTTATGGGTGCCTTGGAGA+TGG 0.483103 6.1:+9177556 MS.gene83890:intron
ATAGAGCTGTAAAAGAATAC+AGG 0.485647 6.1:+9175914 MS.gene83890:CDS
AACTCTCGAATCACAAGCAA+TGG 0.493257 6.1:+9177627 MS.gene83890:CDS
TCTCATGGCACAAATAATAT+GGG 0.494840 6.1:-9176241 None:intergenic
AGTCATGTGCTCGTGTCTCA+TGG 0.495705 6.1:-9176256 None:intergenic
ATGTTAGTTTATGGGTGCCT+TGG 0.495975 6.1:+9177550 MS.gene83890:intron
GGATGATGATATAAGAGGAT+TGG 0.496802 6.1:+9174662 MS.gene83890:CDS
TTGACGGATGATGATATAAG+AGG 0.497315 6.1:+9174657 MS.gene83890:CDS
GAAATCTATGCAGATTGTCA+TGG 0.498853 6.1:+9174720 MS.gene83890:CDS
AAATTATAGTTCCTCCATGA+TGG 0.499164 6.1:-9175402 None:intergenic
ATGTATCATAAACAGCCTAA+AGG 0.499586 6.1:+9175496 MS.gene83890:CDS
TATAACTACTTATACAATGA+AGG 0.501991 6.1:+9175137 MS.gene83890:CDS
TTGCACTAGATTGAAAATGA+AGG 0.505947 6.1:+9176994 MS.gene83890:intron
TTTGGAAATTGAGGAAAGAT+CGG 0.506335 6.1:-9177299 None:intergenic
ATCACCAATAACAGATGGAT+TGG 0.508027 6.1:-9176532 None:intergenic
GATGTAAACAAAGATGATGA+TGG 0.508994 6.1:+9174762 MS.gene83890:CDS
TAGATTGAAAATGAAGGGAT+TGG 0.509056 6.1:+9177000 MS.gene83890:intron
TGTTGACAACAAAGTTACAT+AGG 0.512609 6.1:+9175983 MS.gene83890:CDS
GCAAACTGTCCAGAACTAGA+TGG 0.517030 6.1:+9176653 MS.gene83890:intron
ATAGTCTAATTTACAAAAGG+TGG 0.517908 6.1:+9176289 MS.gene83890:CDS
AGTCTGGTTGATTTCATGCA+TGG 0.520881 6.1:+9175886 MS.gene83890:CDS
AATTTGAAATTGAGTGGAAG+AGG 0.523012 6.1:+9175692 MS.gene83890:CDS
AGATGATTATAAAGAGGCTA+TGG 0.524840 6.1:+9176446 MS.gene83890:CDS
AATTGGAACACCGTTGGCGC+CGG 0.526797 6.1:-9177267 None:intergenic
AGAAACAAAGTACATATTCG+AGG 0.529955 6.1:+9174838 MS.gene83890:CDS
ACTTTGAATTGGAACACCGT+TGG 0.530199 6.1:-9177273 None:intergenic
TGCAGATTGTCATGGGTTTG+TGG 0.531824 6.1:+9174728 MS.gene83890:CDS
AAATCTATGCAGATTGTCAT+GGG 0.533515 6.1:+9174721 MS.gene83890:CDS
CAAAATGTAACATGGAAAGA+TGG 0.535009 6.1:+9177218 MS.gene83890:CDS
TGCTAATCGTTCCATCTCCA+AGG 0.539064 6.1:-9177567 None:intergenic
TTGTCTGCTCGTGGAAATTG+GGG 0.539211 6.1:-9177377 None:intergenic
ATTTAAATGGCCGCAAACGA+TGG 0.539363 6.1:+9174543 None:intergenic
TGCAGAACACTTAGTTCGAA+TGG 0.539821 6.1:-9174865 None:intergenic
TGCACTAGATTGAAAATGAA+GGG 0.542557 6.1:+9176995 MS.gene83890:intron
GTGGCATAAGAACTACATCC+AGG 0.542673 6.1:+9175815 MS.gene83890:CDS
TAGGAACCAAATGAGCATAA+CGG 0.549503 6.1:-9174974 None:intergenic
CAACCGAACTTGAATGTGAT+GGG 0.551023 6.1:-9177403 None:intergenic
CATAAAACCCAAAATATGAC+AGG 0.552239 6.1:-9175063 None:intergenic
CCAACCGAACTTGAATGTGA+TGG 0.552349 6.1:-9177404 None:intergenic
ACATCCAGATGATTATAAAG+AGG 0.552872 6.1:+9176440 MS.gene83890:CDS
TGAGTTTATGTCTTCACACC+TGG 0.554571 6.1:-9175833 None:intergenic
ATTAAACACACCATTACCGC+TGG 0.561779 6.1:-9174589 None:intergenic
ACTCTCGAATCACAAGCAAT+GGG 0.562552 6.1:+9177628 MS.gene83890:CDS
TGATTATAAAGAGGCTATGG+AGG 0.565059 6.1:+9176449 MS.gene83890:CDS
GTTTAATGAAGAAGGAAAAG+AGG 0.567512 6.1:+9174605 MS.gene83890:CDS
ATAGGATCACCAATAACAGA+TGG 0.568307 6.1:-9176537 None:intergenic
TGGACAAATTTGAAATTGAG+TGG 0.572727 6.1:+9175686 MS.gene83890:CDS
TGTAACTTTGTTGTCAACAC+AGG 0.574269 6.1:-9175979 None:intergenic
ATTTGAAATTGAGTGGAAGA+GGG 0.577779 6.1:+9175693 MS.gene83890:CDS
AACGGGTTGGAGTTAACTCA+TGG 0.579913 6.1:-9174956 None:intergenic
CTACTTATACAATGAAGGAA+AGG 0.580957 6.1:+9175142 MS.gene83890:CDS
AATGTCCAGAGTCAAGATCA+AGG 0.583155 6.1:+9177158 MS.gene83890:intron
CCTAAAGGGGTGGTTACTGA+TGG 0.583557 6.1:+9175511 MS.gene83890:CDS
ATGTAAACAAAGATGATGAT+GGG 0.584402 6.1:+9174763 MS.gene83890:CDS
GTGATTGTAGACAGTTTGAA+CGG 0.585179 6.1:+9176202 MS.gene83890:CDS
TCTAAATGCAGTCAATGAAG+AGG 0.588445 6.1:+9176685 MS.gene83890:CDS
AGTTAACTCATGGTTGTGTG+AGG 0.591294 6.1:-9174946 None:intergenic
GATTATAAAGAGGCTATGGA+GGG 0.593735 6.1:+9176450 MS.gene83890:CDS
ACCAAATGAGCATAACGGGT+TGG 0.596668 6.1:-9174969 None:intergenic
GTTTGTGTGAGAAAATAAAG+AGG 0.597142 6.1:+9176481 MS.gene83890:CDS
TCGATTAGTATGTAATAGAG+AGG 0.600970 6.1:+9174800 MS.gene83890:CDS
ATAAAGAGGCGTCGTGAGAG+TGG 0.603066 6.1:+9176495 MS.gene83890:CDS
CCTATCAAAGCCAAGGCCAA+AGG 0.609665 6.1:+9176555 MS.gene83890:CDS
TTTATGATGGCTCAGAAAGG+AGG 0.609928 6.1:+9175080 MS.gene83890:CDS
AAAATGGATAAGAATACATG+TGG 0.610891 6.1:+9177590 MS.gene83890:CDS
AAAGGAGGTCATGAGAGTCT+GGG 0.612373 6.1:+9175095 MS.gene83890:CDS
TGGAAGACCAAAATGTAACA+TGG 0.612794 6.1:+9177210 MS.gene83890:CDS
GTGTTGATAAGAGTTGTGAC+AGG 0.616075 6.1:+9176839 MS.gene83890:CDS
TACTCACAGGTGTATGATGA+GGG 0.616777 6.1:-9177448 None:intergenic
TGGTGATCCTATCAAAGCCA+AGG 0.618217 6.1:+9176548 MS.gene83890:CDS
GTGCATGAAGACCATCAACA+AGG 0.624046 6.1:-9175028 None:intergenic
AAAATGTTCATGTTCTGTCG+AGG 0.625769 6.1:+9176372 MS.gene83890:CDS
GTTAACTCATGGTTGTGTGA+GGG 0.630795 6.1:-9174945 None:intergenic
GATTTATGCTAATTATACTG+TGG 0.632720 6.1:+9175666 MS.gene83890:CDS
CATATGAGATGAAGACAATG+TGG 0.635222 6.1:+9175761 MS.gene83890:CDS
CGATTAGTATGTAATAGAGA+GGG 0.642038 6.1:+9174801 MS.gene83890:CDS
GCACAAATAATATGGGAACA+TGG 0.643217 6.1:-9176234 None:intergenic
ATACTCACAGGTGTATGATG+AGG 0.644284 6.1:-9177449 None:intergenic
CAATTTATCAGACAATACAT+GGG 0.647591 6.1:+9175729 MS.gene83890:CDS
GATGGGAAATTGTCTGCTCG+TGG 0.649132 6.1:-9177386 None:intergenic
AAGGTGGACCAAATCAGCAA+AGG 0.650365 6.1:+9176305 MS.gene83890:CDS
AATGAGAGAAGCTATCAAAG+AGG 0.650952 6.1:+9175543 MS.gene83890:CDS
TCATAAACAGCCTAAAGGGG+TGG 0.651290 6.1:+9175501 MS.gene83890:CDS
ATTATAAAGAGGCTATGGAG+GGG 0.655805 6.1:+9176451 MS.gene83890:CDS
GTATCATAAACAGCCTAAAG+GGG 0.656109 6.1:+9175498 MS.gene83890:CDS
TTCGAACTAAGTGTTCTGCA+AGG 0.661356 6.1:+9174868 MS.gene83890:CDS
TGCATGAAGACCATCAACAA+GGG 0.667132 6.1:-9175027 None:intergenic
ATATGAGATGAAGACAATGT+GGG 0.670288 6.1:+9175762 MS.gene83890:CDS
AATGGTGAAGATTTAGCCAG+CGG 0.677055 6.1:+9174573 MS.gene83890:CDS
GTTGATGGTCTTCATGCACA+CGG 0.677402 6.1:+9175032 MS.gene83890:CDS
ATAATTAGCATAAATCAATG+AGG 0.681924 6.1:-9175659 None:intergenic
TCTGGGTGTAACCATCATGG+AGG 0.690656 6.1:+9175391 MS.gene83890:CDS
AAACACGTGAGACATACAAG+TGG 0.704359 6.1:+9175449 MS.gene83890:CDS
TGTCTGCTCGTGGAAATTGG+GGG 0.715334 6.1:-9177376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGAAAATTTATTTTGGT+CGG + chr6.1:9175270-9175289 MS.gene83890:intron 15.0%
!! ATAATTAGCATAAATCAATG+AGG - chr6.1:9175662-9175681 None:intergenic 20.0%
!! TAAATGTTGATACTAATAAG+TGG + chr6.1:9174904-9174923 MS.gene83890:CDS 20.0%
!! TATAACTACTTATACAATGA+AGG + chr6.1:9175137-9175156 MS.gene83890:CDS 20.0%
!!! AAGTTTAAGATGAATAGATT+TGG + chr6.1:9176123-9176142 MS.gene83890:intron 20.0%
!!! AATTATAATTTGTTTGCACA+GGG + chr6.1:9176817-9176836 MS.gene83890:intron 20.0%
!!! CTCTATTTATGTTAGTTTAT+GGG + chr6.1:9177542-9177561 MS.gene83890:intron 20.0%
!!! GACGTTTAGAAAATTTATTT+TGG + chr6.1:9175266-9175285 MS.gene83890:intron 20.0%
!!! TAATTATAATTTGTTTGCAC+AGG + chr6.1:9176816-9176835 MS.gene83890:intron 20.0%
!!! TATGTTCCTAATTATTTTAC+CGG + chr6.1:9177248-9177267 MS.gene83890:CDS 20.0%
!!! TCTCTATTTATGTTAGTTTA+TGG + chr6.1:9177541-9177560 MS.gene83890:intron 20.0%
!!! TTATCTATCATGTTTTCATT+AGG - chr6.1:9177030-9177049 None:intergenic 20.0%
! AAAATGGATAAGAATACATG+TGG + chr6.1:9177590-9177609 MS.gene83890:CDS 25.0%
! ACAATTTATCAGACAATACA+TGG + chr6.1:9175728-9175747 MS.gene83890:CDS 25.0%
! ACATCAACAATAAAATCTCA+AGG - chr6.1:9177118-9177137 None:intergenic 25.0%
! AGTAGTTTCTCATAGTTAAT+TGG + chr6.1:9177078-9177097 MS.gene83890:intron 25.0%
! ATAGTCTAATTTACAAAAGG+TGG + chr6.1:9176289-9176308 MS.gene83890:CDS 25.0%
! ATGTAAACAAAGATGATGAT+GGG + chr6.1:9174763-9174782 MS.gene83890:CDS 25.0%
! CAATAAAAGAAGATCAAAAC+AGG + chr6.1:9176909-9176928 MS.gene83890:CDS 25.0%
! CAATTTATCAGACAATACAT+GGG + chr6.1:9175729-9175748 MS.gene83890:CDS 25.0%
! CTGATAGTCTAATTTACAAA+AGG + chr6.1:9176286-9176305 MS.gene83890:CDS 25.0%
! GATTTATGCTAATTATACTG+TGG + chr6.1:9175666-9175685 MS.gene83890:CDS 25.0%
!! CTTTTGTAAATTAGACTATC+AGG - chr6.1:9176288-9176307 None:intergenic 25.0%
!! GTATCTAGTTTATCTTGATA+AGG + chr6.1:9176161-9176180 MS.gene83890:CDS 25.0%
!!! TCATATTTTGGGTTTTATGA+TGG + chr6.1:9175067-9175086 MS.gene83890:CDS 25.0%
AAAATTGATGCACCTTGATT+TGG - chr6.1:9177356-9177375 None:intergenic 30.0%
AAATCTATGCAGATTGTCAT+GGG + chr6.1:9174721-9174740 MS.gene83890:CDS 30.0%
AAATTATAGTTCCTCCATGA+TGG - chr6.1:9175405-9175424 None:intergenic 30.0%
AACGTAGATGCAATTTGATT+TGG - chr6.1:9177320-9177339 None:intergenic 30.0%
AAGCTTCAAAAATCTTTACG+AGG + chr6.1:9176016-9176035 MS.gene83890:CDS 30.0%
AATGGTGTGTTTAATGAAGA+AGG + chr6.1:9174597-9174616 MS.gene83890:CDS 30.0%
ACATCCAGATGATTATAAAG+AGG + chr6.1:9176440-9176459 MS.gene83890:CDS 30.0%
AGAAACAAAGTACATATTCG+AGG + chr6.1:9174838-9174857 MS.gene83890:CDS 30.0%
AGAAGAAATCATCTAGGAAA+AGG + chr6.1:9176592-9176611 MS.gene83890:intron 30.0%
AGATGATTATAAAGAGGCTA+TGG + chr6.1:9176446-9176465 MS.gene83890:CDS 30.0%
ATAGAGCTGTAAAAGAATAC+AGG + chr6.1:9175914-9175933 MS.gene83890:CDS 30.0%
ATAGATAAAAACATGCACAC+AGG + chr6.1:9177042-9177061 MS.gene83890:CDS 30.0%
ATAGCCTCTTTATAATCATC+TGG - chr6.1:9176447-9176466 None:intergenic 30.0%
ATATGAGATGAAGACAATGT+GGG + chr6.1:9175762-9175781 MS.gene83890:CDS 30.0%
ATGTATCATAAACAGCCTAA+AGG + chr6.1:9175496-9175515 MS.gene83890:CDS 30.0%
CAAAAACACATTTAACACGA+TGG - chr6.1:9176766-9176785 None:intergenic 30.0%
CAAAATGTAACATGGAAAGA+TGG + chr6.1:9177218-9177237 MS.gene83890:CDS 30.0%
CATAAAACCCAAAATATGAC+AGG - chr6.1:9175066-9175085 None:intergenic 30.0%
CGATTAGTATGTAATAGAGA+GGG + chr6.1:9174801-9174820 MS.gene83890:CDS 30.0%
CTACTTATACAATGAAGGAA+AGG + chr6.1:9175142-9175161 MS.gene83890:CDS 30.0%
GAAGTTTACACAACAGAATA+AGG + chr6.1:9175244-9175263 MS.gene83890:intron 30.0%
GATGTAAACAAAGATGATGA+TGG + chr6.1:9174762-9174781 MS.gene83890:CDS 30.0%
GGATACTTACAAGAAGATTA+GGG + chr6.1:9174632-9174651 MS.gene83890:CDS 30.0%
GTAAACTTCGAAAAGAACAT+TGG - chr6.1:9175233-9175252 None:intergenic 30.0%
GTTTAATGAAGAAGGAAAAG+AGG + chr6.1:9174605-9174624 MS.gene83890:CDS 30.0%
GTTTGTGTGAGAAAATAAAG+AGG + chr6.1:9176481-9176500 MS.gene83890:CDS 30.0%
TAGATTGAAAATGAAGGGAT+TGG + chr6.1:9177000-9177019 MS.gene83890:intron 30.0%
TATCAGATTCACTCAATTGA+CGG - chr6.1:9175004-9175023 None:intergenic 30.0%
TCGATTAGTATGTAATAGAG+AGG + chr6.1:9174800-9174819 MS.gene83890:CDS 30.0%
TCTCATGGCACAAATAATAT+GGG - chr6.1:9176244-9176263 None:intergenic 30.0%
TGCACTAGATTGAAAATGAA+GGG + chr6.1:9176995-9177014 MS.gene83890:intron 30.0%
TGGATACTTACAAGAAGATT+AGG + chr6.1:9174631-9174650 MS.gene83890:CDS 30.0%
TGTATCATAAACAGCCTAAA+GGG + chr6.1:9175497-9175516 MS.gene83890:CDS 30.0%
TGTGAAGAATCCAAAATTCT+TGG + chr6.1:9175627-9175646 MS.gene83890:CDS 30.0%
TGTTGACAACAAAGTTACAT+AGG + chr6.1:9175983-9176002 MS.gene83890:CDS 30.0%
TTGCACTAGATTGAAAATGA+AGG + chr6.1:9176994-9177013 MS.gene83890:intron 30.0%
TTTGGAAATTGAGGAAAGAT+CGG - chr6.1:9177302-9177321 None:intergenic 30.0%
! AATTTGAAATTGAGTGGAAG+AGG + chr6.1:9175692-9175711 MS.gene83890:CDS 30.0%
! ATTTGAAATTGAGTGGAAGA+GGG + chr6.1:9175693-9175712 MS.gene83890:CDS 30.0%
! CATCTTTCCATGTTACATTT+TGG - chr6.1:9177220-9177239 None:intergenic 30.0%
! CATGGAGGAACTATAATTTT+TGG + chr6.1:9175406-9175425 MS.gene83890:CDS 30.0%
! GAAAAGTCTTCCAAGAATTT+TGG - chr6.1:9175640-9175659 None:intergenic 30.0%
! GTTAGAACCTGTCATATTTT+GGG + chr6.1:9175056-9175075 MS.gene83890:CDS 30.0%
! TGGACAAATTTGAAATTGAG+TGG + chr6.1:9175686-9175705 MS.gene83890:CDS 30.0%
! TGTTAGAACCTGTCATATTT+TGG + chr6.1:9175055-9175074 MS.gene83890:CDS 30.0%
!! AAGGTACTTGATACTTTTTG+TGG + chr6.1:9176938-9176957 MS.gene83890:intron 30.0%
!! CCTTGATTTGGAAAAAATTG+TGG - chr6.1:9177344-9177363 None:intergenic 30.0%
!! GCAATTTGATTTGGAAATTG+AGG - chr6.1:9177311-9177330 None:intergenic 30.0%
!! TTTGGTCTTCCATTTTAACA+GGG - chr6.1:9177202-9177221 None:intergenic 30.0%
!! TTTTGGTCTTCCATTTTAAC+AGG - chr6.1:9177203-9177222 None:intergenic 30.0%
!!! AAGCCTCTTGTTATTTTTTC+TGG + chr6.1:9175373-9175392 MS.gene83890:CDS 30.0%
!!! AGCCTCTTGTTATTTTTTCT+GGG + chr6.1:9175374-9175393 MS.gene83890:CDS 30.0%
!!! ATGCGAGAAAACTTTTTTTG+TGG + chr6.1:9175796-9175815 MS.gene83890:CDS 30.0%
!!! CCACAATTTTTTCCAAATCA+AGG + chr6.1:9177341-9177360 MS.gene83890:CDS 30.0%
AAAATGTTCATGTTCTGTCG+AGG + chr6.1:9176372-9176391 MS.gene83890:CDS 35.0%
AAGACCAATCCATCTGTTAT+TGG + chr6.1:9176528-9176547 MS.gene83890:CDS 35.0%
AAGATCGGAACACTTTGAAT+TGG - chr6.1:9177287-9177306 None:intergenic 35.0%
AATGAGAGAAGCTATCAAAG+AGG + chr6.1:9175543-9175562 MS.gene83890:CDS 35.0%
ACTAATAAGTGGAGAGTTTC+TGG + chr6.1:9174915-9174934 MS.gene83890:CDS 35.0%
AGATCAAAACAGGTAAGTGA+AGG + chr6.1:9176919-9176938 MS.gene83890:intron 35.0%
ATACAGGCAGAAAGAGTTAA+TGG + chr6.1:9175930-9175949 MS.gene83890:CDS 35.0%
ATAGGATCACCAATAACAGA+TGG - chr6.1:9176540-9176559 None:intergenic 35.0%
ATCACCAATAACAGATGGAT+TGG - chr6.1:9176535-9176554 None:intergenic 35.0%
ATGATTTCTTCTGCTTACGA+GGG - chr6.1:9176584-9176603 None:intergenic 35.0%
ATTATAAAGAGGCTATGGAG+GGG + chr6.1:9176451-9176470 MS.gene83890:CDS 35.0%
ATTTATGTCTCCATCGTTTG+CGG - chr6.1:9174556-9174575 None:intergenic 35.0%
CAAATCACTCATAGTCAATC+CGG - chr6.1:9175306-9175325 None:intergenic 35.0%
CAAGAAGATTAGGGAATTGA+CGG + chr6.1:9174641-9174660 MS.gene83890:CDS 35.0%
CACCCAGAAAAAATAACAAG+AGG - chr6.1:9175379-9175398 None:intergenic 35.0%
CATATGAGATGAAGACAATG+TGG + chr6.1:9175761-9175780 MS.gene83890:CDS 35.0%
GAAATCTATGCAGATTGTCA+TGG + chr6.1:9174720-9174739 MS.gene83890:CDS 35.0%
GAAGGAAAGGTAAGAATAGA+AGG + chr6.1:9175155-9175174 MS.gene83890:intron 35.0%
GATGGAACGATTAGCAAAAA+TGG + chr6.1:9177574-9177593 MS.gene83890:CDS 35.0%
GATTATAAAGAGGCTATGGA+GGG + chr6.1:9176450-9176469 MS.gene83890:CDS 35.0%
GATTGACTATGAGTGATTTG+GGG + chr6.1:9175306-9175325 MS.gene83890:intron 35.0%
GCACAAATAATATGGGAACA+TGG - chr6.1:9176237-9176256 None:intergenic 35.0%
GGATGATGATATAAGAGGAT+TGG + chr6.1:9174662-9174681 MS.gene83890:CDS 35.0%
GGATTGACTATGAGTGATTT+GGG + chr6.1:9175305-9175324 MS.gene83890:intron 35.0%
GTAAGCAGAAGAAATCATCT+AGG + chr6.1:9176586-9176605 MS.gene83890:intron 35.0%
GTATCATAAACAGCCTAAAG+GGG + chr6.1:9175498-9175517 MS.gene83890:CDS 35.0%
GTCTCATGGCACAAATAATA+TGG - chr6.1:9176245-9176264 None:intergenic 35.0%
GTGATTGTAGACAGTTTGAA+CGG + chr6.1:9176202-9176221 MS.gene83890:CDS 35.0%
TAGGAACCAAATGAGCATAA+CGG - chr6.1:9174977-9174996 None:intergenic 35.0%
TCTAAATGCAGTCAATGAAG+AGG + chr6.1:9176685-9176704 MS.gene83890:CDS 35.0%
TGAAGAAGGAAAAGAGGATA+TGG + chr6.1:9174611-9174630 MS.gene83890:CDS 35.0%
TGAATGTTGTGTATACTCAC+AGG - chr6.1:9177464-9177483 None:intergenic 35.0%
TGATAAACCCCCTGTTAAAA+TGG + chr6.1:9177190-9177209 MS.gene83890:CDS 35.0%
TGATTATAAAGAGGCTATGG+AGG + chr6.1:9176449-9176468 MS.gene83890:CDS 35.0%
TGGAAGACCAAAATGTAACA+TGG + chr6.1:9177210-9177229 MS.gene83890:CDS 35.0%
TGTTGAAAGCAAAAACAGTC+TGG + chr6.1:9175870-9175889 MS.gene83890:CDS 35.0%
! GTAATCATCCTTTGCTGATT+TGG - chr6.1:9176316-9176335 None:intergenic 35.0%
! TGTAACTTTGTTGTCAACAC+AGG - chr6.1:9175982-9176001 None:intergenic 35.0%
! TTGACGGATGATGATATAAG+AGG + chr6.1:9174657-9174676 MS.gene83890:CDS 35.0%
! TTTCCCATCACATTCAAGTT+CGG + chr6.1:9177400-9177419 MS.gene83890:CDS 35.0%
!! TTGGTCTTCCATTTTAACAG+GGG - chr6.1:9177201-9177220 None:intergenic 35.0%
AAACACGTGAGACATACAAG+TGG + chr6.1:9175449-9175468 MS.gene83890:CDS 40.0%
AACTCTCGAATCACAAGCAA+TGG + chr6.1:9177627-9177646 MS.gene83890:CDS 40.0%
AATGGTGAAGATTTAGCCAG+CGG + chr6.1:9174573-9174592 MS.gene83890:CDS 40.0%
AATGTCCAGAGTCAAGATCA+AGG + chr6.1:9177158-9177177 MS.gene83890:intron 40.0%
AATTGTCTGCTCGTGGAAAT+TGG - chr6.1:9177382-9177401 None:intergenic 40.0%
ACTCTCGAATCACAAGCAAT+GGG + chr6.1:9177628-9177647 MS.gene83890:CDS 40.0%
ACTTTGAATTGGAACACCGT+TGG - chr6.1:9177276-9177295 None:intergenic 40.0%
AGGAACCAAATGAGCATAAC+GGG - chr6.1:9174976-9174995 None:intergenic 40.0%
AGTTAACTCATGGTTGTGTG+AGG - chr6.1:9174949-9174968 None:intergenic 40.0%
ATACTCACAGGTGTATGATG+AGG - chr6.1:9177452-9177471 None:intergenic 40.0%
ATTAAACACACCATTACCGC+TGG - chr6.1:9174592-9174611 None:intergenic 40.0%
ATTGTCTGCTCGTGGAAATT+GGG - chr6.1:9177381-9177400 None:intergenic 40.0%
CAACCGAACTTGAATGTGAT+GGG - chr6.1:9177406-9177425 None:intergenic 40.0%
CGGATTGACTATGAGTGATT+TGG + chr6.1:9175304-9175323 MS.gene83890:intron 40.0%
GATGATTTCTTCTGCTTACG+AGG - chr6.1:9176585-9176604 None:intergenic 40.0%
GCAAACGATGGAGACATAAA+TGG + chr6.1:9174555-9174574 MS.gene83890:CDS 40.0%
GGAAAGGTAAGAATAGAAGG+TGG + chr6.1:9175158-9175177 MS.gene83890:intron 40.0%
GTTAACTCATGGTTGTGTGA+GGG - chr6.1:9174948-9174967 None:intergenic 40.0%
TACTCACAGGTGTATGATGA+GGG - chr6.1:9177451-9177470 None:intergenic 40.0%
TCACTCAATTGACGGTTCTT+AGG - chr6.1:9174996-9175015 None:intergenic 40.0%
TCTGACCATGACAAAAACGT+TGG + chr6.1:9176722-9176741 MS.gene83890:CDS 40.0%
TCTGATAAAGCCCTTGTTGA+TGG + chr6.1:9175017-9175036 MS.gene83890:CDS 40.0%
TGACAAAAACGTTGGATGTG+AGG + chr6.1:9176730-9176749 MS.gene83890:CDS 40.0%
TGAGTTTATGTCTTCACACC+TGG - chr6.1:9175836-9175855 None:intergenic 40.0%
TGATTTCTTCTGCTTACGAG+GGG - chr6.1:9176583-9176602 None:intergenic 40.0%
TGCAGAACACTTAGTTCGAA+TGG - chr6.1:9174868-9174887 None:intergenic 40.0%
TGCATGAAGACCATCAACAA+GGG - chr6.1:9175030-9175049 None:intergenic 40.0%
TGCTGCGTTGAGTTATTTGT+AGG + chr6.1:9175190-9175209 MS.gene83890:intron 40.0%
TGTAGACAGTTTGAACGGAT+TGG + chr6.1:9176207-9176226 MS.gene83890:CDS 40.0%
TTCGAACTAAGTGTTCTGCA+AGG + chr6.1:9174868-9174887 MS.gene83890:CDS 40.0%
TTGCATTTGACGCAACTTAC+AGG + chr6.1:9175335-9175354 MS.gene83890:intron 40.0%
TTGCTTGTGATTCGAGAGTT+TGG - chr6.1:9177627-9177646 None:intergenic 40.0%
TTTATGATGGCTCAGAAAGG+AGG + chr6.1:9175080-9175099 MS.gene83890:CDS 40.0%
! AGTCTGGTTGATTTCATGCA+TGG + chr6.1:9175886-9175905 MS.gene83890:CDS 40.0%
! ATGTTAGTTTATGGGTGCCT+TGG + chr6.1:9177550-9177569 MS.gene83890:intron 40.0%
! CACATCCAACGTTTTTGTCA+TGG - chr6.1:9176730-9176749 None:intergenic 40.0%
! CATTCAAGTTCGGTTGGATA+TGG + chr6.1:9177410-9177429 MS.gene83890:CDS 40.0%
! GTGTTGATAAGAGTTGTGAC+AGG + chr6.1:9176839-9176858 MS.gene83890:CDS 40.0%
! TTTTCTGGGTGTAACCATCA+TGG + chr6.1:9175388-9175407 MS.gene83890:CDS 40.0%
!! AATTATTTTACCGGCGCCAA+CGG + chr6.1:9177257-9177276 MS.gene83890:CDS 40.0%
!! GGTTTTATGATGGCTCAGAA+AGG + chr6.1:9175077-9175096 MS.gene83890:CDS 40.0%
!! TGGTCTTCCATTTTAACAGG+GGG - chr6.1:9177200-9177219 None:intergenic 40.0%
!! TTGGCGCCGGTAAAATAATT+AGG - chr6.1:9177257-9177276 None:intergenic 40.0%
AAAGGAGGTCATGAGAGTCT+GGG + chr6.1:9175095-9175114 MS.gene83890:CDS 45.0%
AAGGTGGACCAAATCAGCAA+AGG + chr6.1:9176305-9176324 MS.gene83890:CDS 45.0%
CAAAGACGATGCAACGAGTT+TGG - chr6.1:9175574-9175593 None:intergenic 45.0%
CCAACCGAACTTGAATGTGA+TGG - chr6.1:9177407-9177426 None:intergenic 45.0%
GAAGATTTAGCCAGCGGTAA+TGG + chr6.1:9174579-9174598 MS.gene83890:CDS 45.0%
GCAAACTGTCCAGAACTAGA+TGG + chr6.1:9176653-9176672 MS.gene83890:intron 45.0%
GTGCATGAAGACCATCAACA+AGG - chr6.1:9175031-9175050 None:intergenic 45.0%
GTGGCATAAGAACTACATCC+AGG + chr6.1:9175815-9175834 MS.gene83890:CDS 45.0%
TCATAAACAGCCTAAAGGGG+TGG + chr6.1:9175501-9175520 MS.gene83890:CDS 45.0%
TCCAACCCGTTATGCTCATT+TGG + chr6.1:9174968-9174987 MS.gene83890:CDS 45.0%
TGCAGATTGTCATGGGTTTG+TGG + chr6.1:9174728-9174747 MS.gene83890:CDS 45.0%
TGCTAATCGTTCCATCTCCA+AGG - chr6.1:9177570-9177589 None:intergenic 45.0%
TGGTGATCCTATCAAAGCCA+AGG + chr6.1:9176548-9176567 MS.gene83890:CDS 45.0%
TTGTCTGCTCGTGGAAATTG+GGG - chr6.1:9177380-9177399 None:intergenic 45.0%
! ACATCACGTCCATCTAGTTC+TGG - chr6.1:9176665-9176684 None:intergenic 45.0%
! CCATCACATTCAAGTTCGGT+TGG + chr6.1:9177404-9177423 MS.gene83890:CDS 45.0%
! CTATGAGTGATTTGGGGATG+TGG + chr6.1:9175312-9175331 MS.gene83890:intron 45.0%
!! AACGGGTTGGAGTTAACTCA+TGG - chr6.1:9174959-9174978 None:intergenic 45.0%
!! ACCAAATGAGCATAACGGGT+TGG - chr6.1:9174972-9174991 None:intergenic 45.0%
!! ATGAGAGTCTGGGATTTTGC+AGG + chr6.1:9175105-9175124 MS.gene83890:CDS 45.0%
!! GTTGATGGTCTTCATGCACA+CGG + chr6.1:9175032-9175051 MS.gene83890:CDS 45.0%
AGTCATGTGCTCGTGTCTCA+TGG - chr6.1:9176259-9176278 None:intergenic 50.0%
CAGCACCTTGATCTTGACTC+TGG - chr6.1:9177166-9177185 None:intergenic 50.0%
CCATCAGTAACCACCCCTTT+AGG - chr6.1:9175514-9175533 None:intergenic 50.0%
CCTAAAGGGGTGGTTACTGA+TGG + chr6.1:9175511-9175530 MS.gene83890:CDS 50.0%
CCTATCAAAGCCAAGGCCAA+AGG + chr6.1:9176555-9176574 MS.gene83890:CDS 50.0%
GAAAGGAGGTCATGAGAGTC+TGG + chr6.1:9175094-9175113 MS.gene83890:CDS 50.0%
GATGGGAAATTGTCTGCTCG+TGG - chr6.1:9177389-9177408 None:intergenic 50.0%
GTTTATGGGTGCCTTGGAGA+TGG + chr6.1:9177556-9177575 MS.gene83890:intron 50.0%
TCACTCATAGTCAATCCGGC+TGG - chr6.1:9175302-9175321 None:intergenic 50.0%
TCTGGGTGTAACCATCATGG+AGG + chr6.1:9175391-9175410 MS.gene83890:CDS 50.0%
TGTCTGCTCGTGGAAATTGG+GGG - chr6.1:9177379-9177398 None:intergenic 50.0%
TTTGGTCGGATTCAACCAGC+CGG + chr6.1:9175284-9175303 MS.gene83890:intron 50.0%
! CTGGACAGTTTGCTTCGTGT+GGG - chr6.1:9176646-9176665 None:intergenic 50.0%
! TCTGGACAGTTTGCTTCGTG+TGG - chr6.1:9176647-9176666 None:intergenic 50.0%
!! ATAAAGAGGCGTCGTGAGAG+TGG + chr6.1:9176495-9176514 MS.gene83890:CDS 50.0%
!! CCTTTGGCCTTGGCTTTGAT+AGG - chr6.1:9176558-9176577 None:intergenic 50.0%
!! GAGTCTGGGATTTTGCAGGA+AGG + chr6.1:9175109-9175128 MS.gene83890:CDS 50.0%
AATTGGAACACCGTTGGCGC+CGG - chr6.1:9177270-9177289 None:intergenic 55.0%
!! CTGCTTACGAGGGGCACCTT+TGG - chr6.1:9176574-9176593 None:intergenic 60.0%
!! ACGAGGGGCACCTTTGGCCT+TGG - chr6.1:9176568-9176587 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 9174549 9177667 9174549 ID=MS.gene83890
chr6.1 mRNA 9174549 9177667 9174549 ID=MS.gene83890.t1;Parent=MS.gene83890
chr6.1 exon 9174549 9175163 9174549 ID=MS.gene83890.t1.exon1;Parent=MS.gene83890.t1
chr6.1 CDS 9174549 9175163 9174549 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9175361 9176089 9175361 ID=MS.gene83890.t1.exon2;Parent=MS.gene83890.t1
chr6.1 CDS 9175361 9176089 9175361 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9176126 9176585 9176126 ID=MS.gene83890.t1.exon3;Parent=MS.gene83890.t1
chr6.1 CDS 9176126 9176585 9176126 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9176666 9176751 9176666 ID=MS.gene83890.t1.exon4;Parent=MS.gene83890.t1
chr6.1 CDS 9176666 9176751 9176666 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9176838 9176930 9176838 ID=MS.gene83890.t1.exon5;Parent=MS.gene83890.t1
chr6.1 CDS 9176838 9176930 9176838 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9177003 9177074 9177003 ID=MS.gene83890.t1.exon6;Parent=MS.gene83890.t1
chr6.1 CDS 9177003 9177074 9177003 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9177167 9177463 9177167 ID=MS.gene83890.t1.exon7;Parent=MS.gene83890.t1
chr6.1 CDS 9177167 9177463 9177167 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
chr6.1 exon 9177557 9177667 9177557 ID=MS.gene83890.t1.exon8;Parent=MS.gene83890.t1
chr6.1 CDS 9177557 9177667 9177557 ID=cds.MS.gene83890.t1;Parent=MS.gene83890.t1
Gene Sequence

>MS.gene83890

ATGGCCGCAAACGATGGAGACATAAATGGTGAAGATTTAGCCAGCGGTAATGGTGTGTTTAATGAAGAAGGAAAAGAGGATATGGATACTTACAAGAAGATTAGGGAATTGACGGATGATGATATAAGAGGATTGGAATTTGATTCAGAGCAAAAAGCGACACAATTTTATGAAATCTATGCAGATTGTCATGGGTTTGTGGTAAGAAAAGATGATGTAAACAAAGATGATGATGGGAATATAATTGCACGTCGATTAGTATGTAATAGAGAGGGTGAGAATAAAAATAAGAAACAAAGTACATATTCGAGGCAGACCATTCGAACTAAGTGTTCTGCAAGGCTTCGAGTAGTTTTAAATGTTGATACTAATAAGTGGAGAGTTTCTGGATTCGAGCCCTCACACAACCATGAGTTAACTCCAACCCGTTATGCTCATTTGGTTCCTAAGAACCGTCAATTGAGTGAATCTGATAAAGCCCTTGTTGATGGTCTTCATGCACACGGTGTTAGAACCTGTCATATTTTGGGTTTTATGATGGCTCAGAAAGGAGGTCATGAGAGTCTGGGATTTTGCAGGAAGGACTTATATAACTACTTATACAATGAAGGAAAGGTAAGAATAGAAGGTGGAGATTCTTTTGCTGCGTTGAGTTATTTGTAGGCTAAAGCTGATAATGATCCAATGTTCTTTTCGAAGTTTACACAACAGAATAAGGACGTTTAGAAAATTTATTTTGGTCGGATTCAACCAGCCGGATTGACTATGAGTGATTTGGGGATGTGGTTGCATTTGACGCAACTTACAGGAAGAACAGATATGACAAGCCTCTTGTTATTTTTTCTGGGTGTAACCATCATGGAGGAACTATAATTTTTGGTTGTGCTTTAGTTTCTAATGAAACACGTGAGACATACAAGTGGCTTTTAAATACATTTTTAGAAGCAATGTATCATAAACAGCCTAAAGGGGTGGTTACTGATGGAGATCTTTCAATGAGAGAAGCTATCAAAGAGGTATTTCCAAACTCGTTGCATCGTCTTTGTTCATCGCATTTTCATCGAAACGCTGAAGAGAATGTGAAGAATCCAAAATTCTTGGAAGACTTTTCCTCATTGATTTATGCTAATTATACTGTGGACAAATTTGAAATTGAGTGGAAGAGGGTCATTGATGATTACAATTTATCAGACAATACATGGGTTAAAAAAGCATATGAGATGAAGACAATGTGGGCGAGTGCATACATGCGAGAAAACTTTTTTTGTGGCATAAGAACTACATCCAGGTGTGAAGACATAAACTCATTTATAAATATGTATGTTGAAAGCAAAAACAGTCTGGTTGATTTCATGCATGGTTTTAATAGAGCTGTAAAAGAATACAGGCAGAAAGAGTTAATGGCAGATTTTAATACGTTCTATTACAAACCTGTGTTGACAACAAAGTTACATAGGTTTGAGCTTGAAGCTTCAAAAATCTTTACGAGGATAAAATTTTATGAAGTTCAAAATGAAATAGAAGATGCAATCACATTAAATGTTTTTGAGCAGTCTAGTCTCAAAAAGACTGTGAAGTTTAAGATGAATAGATTTGGCAACAAAGATTCTACGTATCTAGTTTATCTTGATAAGGAACAAAGTAAATTTTTATGTGATTGTAGACAGTTTGAACGGATTGGAATTCCATGTTCCCATATTATTTGTGCCATGAGACACGAGCACATGACTGAGCTTCCTGATAGTCTAATTTACAAAAGGTGGACCAAATCAGCAAAGGATGATTACATATCGTCTATGTCTTCTAAAGAATGTGATGATGAAAAAATGTTCATGTTCTGTCGAGGAACTATGTCTACTGCATTGAATAATCTATATGACATTTCTTATAAACATCCAGATGATTATAAAGAGGCTATGGAGGGGATTTATAGTTTGTGTGAGAAAATAAAGAGGCGTCGTGAGAGTGGTGAAAAATATAAGACCAATCCATCTGTTATTGGTGATCCTATCAAAGCCAAGGCCAAAGGTGCCCCTCGTAAGCAGAAGAAATCATCTAGGAAAAGGAGACATTGTTCTGTCTGCAAAAATATTGCCCACACGAAGCAAACTGTCCAGAACTAGATGGACGTGATGTTCTAAATGCAGTCAATGAAGAGGACTATTCTCGTCGATCTGACCATGACAAAAACGTTGGATGTGAGGTATGTTTACACCATCGTGTTAAATGTGTTTTTGTTTGTAAATGTTTGTGTTCTTTATTCAATATAATTATAATTTGTTTGCACAGGGTGTTGATAAGAGTTGTGACAGGAAACGTAAGAGAAAAGTTGTCAATGTTACTTCAATGCAAGAAGATATCAATAAAAGAAGATCAAAACAGGTAAGTGAAGGTACTTGATACTTTTTGTGGAAATTTATTAAGTGTTTGACAACTTTTATAATGTTGCACTAGATTGAAAATGAAGGGATTGGTCGACCTAATGAAAACATGATAGATAAAAACATGCACACAGGATTTGACAACGTAAGTAGTTTCTCATAGTTAATTGGAGCAGATTTCAGTACCTTGAGATTTTATTGTTGATGTTTTGATTTGTTTCAAAACAAAATGTCCAGAGTCAAGATCAAGGTGCTGTACATGATAAACCCCCTGTTAAAATGGAAGACCAAAATGTAACATGGAAAGATGGTTCAATGTATGTTCCTAATTATTTTACCGGCGCCAACGGTGTTCCAATTCAAAGTGTTCCGATCTTTCCTCAATTTCCAAATCAAATTGCATCTACGTTTCCACAATTTTTTCCAAATCAAGGTGCATCAATTTTCCCCCAATTTCCACGAGCAGACAATTTCCCATCACATTCAAGTTCGGTTGGATATGGCAGAGCACATAATGTCCCTCATCATACACCTGTGAGTATACACAACATTCATATTACTAATTATGTGAATTTATGCTGTCAAATATGTTTTCTCTCTCTAATCTGTATTCTCTATTTATGTTAGTTTATGGGTGCCTTGGAGATGGAACGATTAGCAAAAATGGATAAGAATACATGTGGAAATGAAGATTCCAAACTCTCGAATCACAAGCAATGGGACAAGCATCCAAAGTGA
Protein sequence

>MS.gene83890.t1

MAANDGDINGEDLASGNGVFNEEGKEDMDTYKKIRELTDDDIRGLEFDSEQKATQFYEIYADCHGFVVRKDDVNKDDDGNIIARRLVCNREGENKNKKQSTYSRQTIRTKCSARLRVVLNVDTNKWRVSGFEPSHNHELTPTRYAHLVPKNRQLSESDKALVDGLHAHGVRTCHILGFMMAQKGGHESLGFCRKDLYNYLYNEGKNRYDKPLVIFSGCNHHGGTIIFGCALVSNETRETYKWLLNTFLEAMYHKQPKGVVTDGDLSMREAIKEVFPNSLHRLCSSHFHRNAEENVKNPKFLEDFSSLIYANYTVDKFEIEWKRVIDDYNLSDNTWVKKAYEMKTMWASAYMRENFFCGIRTTSRCEDINSFINMYVESKNSLVDFMHGFNRAVKEYRQKELMADFNTFYYKPVLTTKLHRFELEASKIFTRIKFYEVQNEIEDAITLNFKMNRFGNKDSTYLVYLDKEQSKFLCDCRQFERIGIPCSHIICAMRHEHMTELPDSLIYKRWTKSAKDDYISSMSSKECDDEKMFMFCRGTMSTALNNLYDISYKHPDDYKEAMEGIYSLCEKIKRRRESGEKYKTNPSVIGDPIKAKAKGAPQLDGRDVLNAVNEEDYSRRSDHDKNVGCEGVDKSCDRKRKRKVVNVTSMQEDINKRRSKQIENEGIGRPNENMIDKNMHTGFDNSQDQGAVHDKPPVKMEDQNVTWKDGSMYVPNYFTGANGVPIQSVPIFPQFPNQIASTFPQFFPNQGASIFPQFPRADNFPSHSSSVGYGRAHNVPHHTPFMGALEMERLAKMDKNTCGNEDSKLSNHKQWDKHPK