Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84051.t1 | XP_024630392.1 | 90.9 | 307 | 26 | 2 | 1 | 307 | 1 | 305 | 7.40E-152 | 546.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84051.t1 | Q8L3W1 | 25.5 | 330 | 185 | 9 | 11 | 285 | 6 | 329 | 2.5e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84051.t1 | A0A396JU70 | 90.8 | 305 | 26 | 2 | 1 | 305 | 1 | 303 | 4.5e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84051.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84051.t1 | MTR_4g119990 | 63.609 | 327 | 92 | 7 | 1 | 304 | 1 | 323 | 1.63e-137 | 394 |
| MS.gene84051.t1 | MTR_6g043890 | 61.639 | 305 | 88 | 7 | 1 | 284 | 1 | 297 | 6.70e-124 | 358 |
| MS.gene84051.t1 | MTR_1g035440 | 56.379 | 243 | 65 | 5 | 1 | 202 | 1 | 243 | 6.92e-70 | 217 |
| MS.gene84051.t1 | MTR_3g098790 | 29.553 | 291 | 195 | 6 | 9 | 292 | 11 | 298 | 2.67e-32 | 122 |
| MS.gene84051.t1 | MTR_5g044670 | 29.524 | 315 | 191 | 11 | 11 | 307 | 16 | 317 | 3.55e-31 | 119 |
| MS.gene84051.t1 | MTR_7g050720 | 29.773 | 309 | 190 | 9 | 9 | 292 | 8 | 314 | 5.76e-31 | 118 |
| MS.gene84051.t1 | MTR_3g061310 | 29.693 | 293 | 180 | 9 | 9 | 292 | 10 | 285 | 1.95e-30 | 116 |
| MS.gene84051.t1 | MTR_7g050560 | 30.824 | 279 | 171 | 7 | 9 | 278 | 11 | 276 | 3.51e-30 | 116 |
| MS.gene84051.t1 | MTR_3g061350 | 29.153 | 295 | 178 | 11 | 9 | 292 | 10 | 284 | 8.18e-30 | 114 |
| MS.gene84051.t1 | MTR_3g061320 | 29.932 | 294 | 172 | 10 | 9 | 292 | 10 | 279 | 1.05e-29 | 114 |
| MS.gene84051.t1 | MTR_1g035460 | 28.846 | 312 | 167 | 10 | 27 | 301 | 2 | 295 | 1.69e-29 | 116 |
| MS.gene84051.t1 | MTR_6g061070 | 27.744 | 328 | 203 | 10 | 5 | 304 | 12 | 333 | 2.73e-29 | 116 |
| MS.gene84051.t1 | MTR_7g050710 | 28.521 | 284 | 188 | 6 | 9 | 278 | 11 | 293 | 8.42e-29 | 113 |
| MS.gene84051.t1 | MTR_3g061370 | 29.866 | 298 | 178 | 11 | 6 | 292 | 4 | 281 | 9.18e-29 | 112 |
| MS.gene84051.t1 | MTR_1g035640 | 30.686 | 277 | 175 | 9 | 20 | 291 | 14 | 278 | 5.41e-28 | 113 |
| MS.gene84051.t1 | MTR_1g035570 | 30.556 | 288 | 172 | 9 | 20 | 286 | 14 | 294 | 1.01e-27 | 111 |
| MS.gene84051.t1 | MTR_3g061340 | 30.142 | 282 | 165 | 12 | 11 | 285 | 12 | 268 | 4.33e-27 | 107 |
| MS.gene84051.t1 | MTR_7g050580 | 27.798 | 277 | 182 | 5 | 9 | 278 | 11 | 276 | 1.05e-26 | 107 |
| MS.gene84051.t1 | MTR_1g108780 | 26.207 | 290 | 187 | 8 | 27 | 297 | 13 | 294 | 1.18e-26 | 109 |
| MS.gene84051.t1 | MTR_8g103940 | 27.331 | 311 | 200 | 10 | 9 | 301 | 37 | 339 | 1.30e-26 | 109 |
| MS.gene84051.t1 | MTR_3g061330 | 28.980 | 245 | 150 | 8 | 9 | 247 | 10 | 236 | 3.16e-25 | 101 |
| MS.gene84051.t1 | MTR_1g035620 | 29.617 | 287 | 157 | 10 | 11 | 280 | 9 | 267 | 5.03e-25 | 103 |
| MS.gene84051.t1 | MTR_7g050590 | 28.090 | 267 | 175 | 6 | 27 | 278 | 2 | 266 | 6.46e-22 | 93.6 |
| MS.gene84051.t1 | MTR_1g050845 | 26.449 | 276 | 168 | 7 | 11 | 280 | 9 | 255 | 1.34e-21 | 95.5 |
| MS.gene84051.t1 | MTR_3g061290 | 38.667 | 150 | 80 | 7 | 9 | 149 | 10 | 156 | 1.15e-20 | 88.2 |
| MS.gene84051.t1 | MTR_1g035480 | 34.752 | 141 | 77 | 4 | 6 | 135 | 12 | 148 | 3.88e-20 | 86.3 |
| MS.gene84051.t1 | MTR_1g033740 | 30.994 | 171 | 100 | 5 | 5 | 165 | 16 | 178 | 3.94e-20 | 86.7 |
| MS.gene84051.t1 | MTR_1g035510 | 31.604 | 212 | 125 | 6 | 27 | 227 | 2 | 204 | 8.05e-20 | 86.7 |
| MS.gene84051.t1 | MTR_5g070440 | 25.503 | 298 | 175 | 9 | 1 | 292 | 11 | 267 | 2.05e-19 | 86.3 |
| MS.gene84051.t1 | MTR_1g035500 | 33.333 | 168 | 91 | 6 | 5 | 161 | 19 | 176 | 3.06e-19 | 84.0 |
| MS.gene84051.t1 | MTR_3g005490 | 25.987 | 304 | 153 | 12 | 3 | 292 | 13 | 258 | 3.26e-18 | 82.8 |
| MS.gene84051.t1 | MTR_1g021360 | 26.936 | 297 | 168 | 13 | 9 | 278 | 182 | 456 | 4.86e-18 | 84.7 |
| MS.gene84051.t1 | MTR_1g035520 | 27.036 | 307 | 167 | 12 | 27 | 292 | 88 | 378 | 2.55e-17 | 82.0 |
| MS.gene84051.t1 | MTR_1g035650 | 30.114 | 176 | 115 | 4 | 11 | 183 | 9 | 179 | 5.92e-17 | 78.2 |
| MS.gene84051.t1 | MTR_3g005480 | 23.667 | 300 | 166 | 10 | 5 | 294 | 15 | 261 | 2.99e-16 | 77.4 |
| MS.gene84051.t1 | MTR_1g035470 | 30.872 | 149 | 80 | 5 | 27 | 165 | 2 | 137 | 5.07e-16 | 73.9 |
| MS.gene84051.t1 | MTR_1g021380 | 27.063 | 303 | 184 | 11 | 9 | 278 | 20 | 318 | 5.51e-16 | 77.8 |
| MS.gene84051.t1 | MTR_3g005460 | 24.324 | 296 | 153 | 9 | 2 | 290 | 16 | 247 | 8.47e-16 | 78.2 |
| MS.gene84051.t1 | MTR_3g005460 | 22.924 | 301 | 175 | 9 | 9 | 294 | 260 | 518 | 2.47e-13 | 70.5 |
| MS.gene84051.t1 | MTR_1g021400 | 23.952 | 334 | 167 | 13 | 9 | 278 | 28 | 338 | 9.41e-15 | 74.3 |
| MS.gene84051.t1 | MTR_1g021435 | 24.620 | 329 | 183 | 14 | 9 | 278 | 20 | 342 | 1.47e-14 | 73.9 |
| MS.gene84051.t1 | MTR_3g005420 | 24.221 | 289 | 172 | 9 | 10 | 292 | 288 | 535 | 2.60e-13 | 70.5 |
| MS.gene84051.t1 | MTR_3g005495 | 30.189 | 159 | 99 | 3 | 10 | 157 | 242 | 399 | 7.48e-13 | 68.9 |
| MS.gene84051.t1 | MTR_1g021410 | 24.765 | 319 | 183 | 14 | 9 | 278 | 21 | 331 | 1.21e-11 | 65.1 |
| MS.gene84051.t1 | MTR_7g050640 | 35.294 | 102 | 65 | 1 | 10 | 111 | 12 | 112 | 3.29e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84051.t1 | AT3G18990 | 25.581 | 344 | 194 | 10 | 11 | 299 | 6 | 342 | 2.00e-21 | 93.6 |
| MS.gene84051.t1 | AT3G18990 | 25.455 | 330 | 185 | 9 | 11 | 285 | 6 | 329 | 2.66e-21 | 92.8 |
| MS.gene84051.t1 | AT3G18960 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 5.42e-15 | 72.8 |
| MS.gene84051.t1 | AT3G18960 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 6.46e-15 | 72.4 |
| MS.gene84051.t1 | AT4G33280 | 24.150 | 294 | 185 | 7 | 24 | 292 | 36 | 316 | 4.36e-14 | 72.0 |
| MS.gene84051.t1 | AT1G49475 | 35.135 | 111 | 70 | 2 | 11 | 121 | 34 | 142 | 7.12e-14 | 69.3 |
| MS.gene84051.t1 | AT4G01580 | 32.673 | 101 | 67 | 1 | 11 | 111 | 30 | 129 | 1.24e-13 | 68.6 |
| MS.gene84051.t1 | AT3G18960 | 35.294 | 85 | 54 | 1 | 27 | 111 | 9 | 92 | 5.39e-11 | 60.8 |
Find 35 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACTTTAGAGTAAT+TGG | 0.159576 | 1.3:-32789649 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1.3:-32790628 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1.3:+32790713 | MS.gene84051:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1.3:-32790232 | None:intergenic |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1.3:-32790824 | None:intergenic |
| CTTCGTCATCACGGGGTAAA+AGG | 0.257683 | 1.3:+32789920 | MS.gene84051:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1.3:+32790136 | MS.gene84051:CDS |
| TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1.3:-32789958 | None:intergenic |
| GTCTTTAATGTGATTGTATT+CGG | 0.340889 | 1.3:+32789808 | MS.gene84051:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1.3:-32790709 | None:intergenic |
| TTGGAAACTTTAGAGTAATT+GGG | 0.392633 | 1.3:-32789648 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1.3:-32790779 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1.3:+32790796 | MS.gene84051:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1.3:-32790572 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1.3:-32789855 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1.3:+32790577 | MS.gene84051:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1.3:-32789856 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1.3:+32789912 | MS.gene84051:CDS |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1.3:+32789911 | MS.gene84051:CDS |
| TACTCTAAAGTTTCCAAACA+TGG | 0.526523 | 1.3:+32789654 | MS.gene84051:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1.3:+32789851 | MS.gene84051:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1.3:+32790241 | MS.gene84051:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1.3:+32789616 | MS.gene84051:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1.3:+32790678 | MS.gene84051:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1.3:+32789852 | MS.gene84051:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1.3:+32790586 | MS.gene84051:CDS |
| GTGATTGTATTCGGTAGATG+TGG | 0.588390 | 1.3:+32789817 | MS.gene84051:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1.3:+32790674 | MS.gene84051:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1.3:+32789185 | MS.gene84051:CDS |
| GAATACAATCACATTAAAGA+CGG | 0.610018 | 1.3:-32789806 | None:intergenic |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1.3:-32789183 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1.3:+32790590 | MS.gene84051:CDS |
| TCTAAAGTTTCCAAACATGG+TGG | 0.644869 | 1.3:+32789657 | MS.gene84051:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1.3:+32790015 | MS.gene84051:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1.3:+32789913 | MS.gene84051:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAATTTATGAAAATTTTA+TGG | + | chr1.3:32790900-32790919 | MS.gene84051:intron | 10.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1.3:32790827-32790846 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1.3:32790090-32790109 | MS.gene84051:intron | 15.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1.3:32790544-32790563 | MS.gene84051:intron | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1.3:32790631-32790650 | None:intergenic | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1.3:32790712-32790731 | None:intergenic | 20.0% |
| !! | CAATATAATAATTCATGTGT+TGG | + | chr1.3:32790945-32790964 | MS.gene84051:intron | 20.0% |
| !! | GGAAATTCATTTAATATGAT+GGG | + | chr1.3:32790864-32790883 | MS.gene84051:intron | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1.3:32789303-32789322 | MS.gene84051:intron | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1.3:32789286-32789305 | None:intergenic | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1.3:32790630-32790649 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1.3:32790420-32790439 | MS.gene84051:intron | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1.3:32790713-32790732 | MS.gene84051:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1.3:32790113-32790132 | MS.gene84051:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1.3:32789762-32789781 | MS.gene84051:CDS | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1.3:32790630-32790649 | MS.gene84051:CDS | 20.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1.3:32790136-32790155 | MS.gene84051:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1.3:32790382-32790401 | None:intergenic | 25.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | + | chr1.3:32789446-32789465 | MS.gene84051:intron | 25.0% |
| ! | CATATTAAATGAATTTCCGA+TGG | - | chr1.3:32790862-32790881 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1.3:32790366-32790385 | MS.gene84051:intron | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1.3:32790369-32790388 | None:intergenic | 25.0% |
| ! | CGGAAATTCATTTAATATGA+TGG | + | chr1.3:32790863-32790882 | MS.gene84051:intron | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | - | chr1.3:32789809-32789828 | None:intergenic | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1.3:32790782-32790801 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1.3:32789808-32789827 | MS.gene84051:CDS | 25.0% |
| ! | TATATTTGATTAGTGTCCAT+CGG | + | chr1.3:32790843-32790862 | MS.gene84051:intron | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1.3:32790575-32790594 | None:intergenic | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | chr1.3:32789961-32789980 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1.3:32789611-32789630 | None:intergenic | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1.3:32789610-32789629 | None:intergenic | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1.3:32789712-32789731 | MS.gene84051:CDS | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1.3:32789611-32789630 | MS.gene84051:CDS | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1.3:32790784-32790803 | MS.gene84051:CDS | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1.3:32790577-32790596 | MS.gene84051:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1.3:32790790-32790809 | MS.gene84051:CDS | 25.0% |
| !!! | TTGGAAACTTTAGAGTAATT+GGG | - | chr1.3:32789651-32789670 | None:intergenic | 25.0% |
| !!! | TTTGGAAACTTTAGAGTAAT+TGG | - | chr1.3:32789652-32789671 | None:intergenic | 25.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1.3:32790190-32790209 | MS.gene84051:CDS | 30.0% | |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1.3:32789214-32789233 | None:intergenic | 30.0% | |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1.3:32789716-32789735 | MS.gene84051:CDS | 30.0% |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1.3:32790235-32790254 | None:intergenic | 30.0% |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1.3:32789243-32789262 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1.3:32789244-32789263 | None:intergenic | 30.0% |
| !! | TACTCTAAAGTTTCCAAACA+TGG | + | chr1.3:32789654-32789673 | MS.gene84051:CDS | 30.0% |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1.3:32790743-32790762 | MS.gene84051:CDS | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1.3:32789616-32789635 | MS.gene84051:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1.3:32790181-32790200 | None:intergenic | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1.3:32789675-32789694 | MS.gene84051:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1.3:32789202-32789221 | MS.gene84051:CDS | 30.0% |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1.3:32789674-32789693 | MS.gene84051:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1.3:32790815-32790834 | MS.gene84051:CDS | 30.0% |
| AAACAATCTGCACTAACTTG+TGG | + | chr1.3:32790674-32790693 | MS.gene84051:CDS | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | + | chr1.3:32790241-32790260 | MS.gene84051:CDS | 35.0% | |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1.3:32789185-32789204 | MS.gene84051:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1.3:32790434-32790453 | None:intergenic | 35.0% | |
| TAAGACACATATGGACATGA+TGG | + | chr1.3:32790586-32790605 | MS.gene84051:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1.3:32789238-32789257 | MS.gene84051:CDS | 35.0% | |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1.3:32789670-32789689 | None:intergenic | 35.0% |
| ! | TCTAAAGTTTCCAAACATGG+TGG | + | chr1.3:32789657-32789676 | MS.gene84051:CDS | 35.0% |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1.3:32790796-32790815 | MS.gene84051:CDS | 35.0% |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1.3:32790431-32790450 | MS.gene84051:intron | 35.0% |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1.3:32789605-32789624 | MS.gene84051:CDS | 35.0% |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1.3:32789851-32789870 | MS.gene84051:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1.3:32789852-32789871 | MS.gene84051:CDS | 40.0% | |
| GTGATTGTATTCGGTAGATG+TGG | + | chr1.3:32789817-32789836 | MS.gene84051:CDS | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | + | chr1.3:32790957-32790976 | MS.gene84051:intron | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1.3:32789859-32789878 | None:intergenic | 40.0% | |
| TTCATGTGTTGGACTATTGC+AGG | + | chr1.3:32790956-32790975 | MS.gene84051:intron | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1.3:32789911-32789930 | MS.gene84051:CDS | 40.0% | |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1.3:32790678-32790697 | MS.gene84051:CDS | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1.3:32790590-32790609 | MS.gene84051:CDS | 40.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1.3:32790015-32790034 | MS.gene84051:CDS | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1.3:32789858-32789877 | None:intergenic | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1.3:32790019-32790038 | MS.gene84051:intron | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1.3:32789912-32789931 | MS.gene84051:CDS | 45.0% | |
| CTTCGTCATCACGGGGTAAA+AGG | + | chr1.3:32789920-32789939 | MS.gene84051:CDS | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1.3:32789913-32789932 | MS.gene84051:CDS | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | + | chr1.3:32790961-32790980 | MS.gene84051:intron | 50.0% | |
| !! | CTTTTACCCCGTGATGACGA+AGG | - | chr1.3:32789922-32789941 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 32789185 | 32790988 | 32789185 | ID=MS.gene84051 |
| chr1.3 | mRNA | 32789185 | 32790988 | 32789185 | ID=MS.gene84051.t1;Parent=MS.gene84051 |
| chr1.3 | exon | 32789185 | 32789259 | 32789185 | ID=MS.gene84051.t1.exon1;Parent=MS.gene84051.t1 |
| chr1.3 | CDS | 32789185 | 32789259 | 32789185 | ID=cds.MS.gene84051.t1;Parent=MS.gene84051.t1 |
| chr1.3 | exon | 32789601 | 32790036 | 32789601 | ID=MS.gene84051.t1.exon2;Parent=MS.gene84051.t1 |
| chr1.3 | CDS | 32789601 | 32790036 | 32789601 | ID=cds.MS.gene84051.t1;Parent=MS.gene84051.t1 |
| chr1.3 | exon | 32790132 | 32790262 | 32790132 | ID=MS.gene84051.t1.exon3;Parent=MS.gene84051.t1 |
| chr1.3 | CDS | 32790132 | 32790262 | 32790132 | ID=cds.MS.gene84051.t1;Parent=MS.gene84051.t1 |
| chr1.3 | exon | 32790566 | 32790836 | 32790566 | ID=MS.gene84051.t1.exon4;Parent=MS.gene84051.t1 |
| chr1.3 | CDS | 32790566 | 32790836 | 32790566 | ID=cds.MS.gene84051.t1;Parent=MS.gene84051.t1 |
| chr1.3 | exon | 32790978 | 32790988 | 32790978 | ID=MS.gene84051.t1.exon5;Parent=MS.gene84051.t1 |
| chr1.3 | CDS | 32790978 | 32790988 | 32790978 | ID=cds.MS.gene84051.t1;Parent=MS.gene84051.t1 |
| Gene Sequence |
| Protein sequence |
