Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84053.t1 | RHN78223.1 | 75.1 | 350 | 69 | 4 | 2 | 339 | 89 | 432 | 7.30E-124 | 453.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84053.t1 | Q2R9D2 | 33.0 | 100 | 66 | 1 | 94 | 192 | 290 | 389 | 1.4e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84053.t1 | A0A396JPN4 | 75.1 | 350 | 69 | 4 | 2 | 339 | 89 | 432 | 5.2e-124 | 453.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84053.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84053.t1 | MTR_1g035570 | 71.965 | 346 | 52 | 5 | 2 | 339 | 89 | 397 | 1.65e-160 | 455 |
| MS.gene84053.t1 | MTR_1g035490 | 69.139 | 337 | 72 | 5 | 17 | 340 | 15 | 332 | 9.70e-146 | 414 |
| MS.gene84053.t1 | MTR_1g035620 | 39.769 | 347 | 165 | 10 | 2 | 335 | 93 | 408 | 1.86e-66 | 215 |
| MS.gene84053.t1 | MTR_1g035640 | 36.181 | 398 | 171 | 11 | 2 | 337 | 89 | 465 | 7.07e-59 | 197 |
| MS.gene84053.t1 | MTR_1g050845 | 36.709 | 316 | 142 | 9 | 2 | 303 | 93 | 364 | 9.88e-47 | 169 |
| MS.gene84053.t1 | MTR_6g061070 | 33.158 | 380 | 199 | 11 | 2 | 336 | 101 | 470 | 3.50e-45 | 160 |
| MS.gene84053.t1 | MTR_8g103940 | 29.371 | 286 | 165 | 12 | 75 | 335 | 220 | 493 | 8.51e-24 | 102 |
| MS.gene84053.t1 | MTR_1g108780 | 25.939 | 293 | 173 | 9 | 73 | 335 | 178 | 456 | 6.70e-19 | 87.8 |
| MS.gene84053.t1 | MTR_1g035520 | 37.607 | 117 | 69 | 3 | 224 | 336 | 267 | 383 | 7.05e-15 | 75.5 |
| MS.gene84053.t1 | MTR_5g044670 | 28.095 | 210 | 136 | 5 | 2 | 200 | 102 | 307 | 4.28e-14 | 72.4 |
| MS.gene84053.t1 | MTR_3g098790 | 29.665 | 209 | 125 | 8 | 2 | 196 | 99 | 299 | 1.43e-13 | 70.9 |
| MS.gene84053.t1 | MTR_7g050590 | 27.907 | 215 | 131 | 6 | 1 | 196 | 71 | 280 | 5.27e-12 | 65.9 |
| MS.gene84053.t1 | MTR_7g050560 | 27.805 | 205 | 127 | 6 | 1 | 196 | 98 | 290 | 6.92e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTGTGGAATTGAAAA+TGG | 0.233869 | 1.3:-32809882 | MS.gene84053:CDS |
| GTGTTTAATGTTTCAATTGT+AGG | 0.249847 | 1.3:-32809713 | MS.gene84053:CDS |
| CTTTGCGAATGGTTCGTTTC+CGG | 0.252300 | 1.3:+32810424 | None:intergenic |
| GCATAAAACATTCAAGGTTT+TGG | 0.259758 | 1.3:-32810052 | MS.gene84053:CDS |
| TTAATGGAACTGCAACAATA+AGG | 0.277244 | 1.3:-32810625 | MS.gene84053:CDS |
| TTCATCAACAGATTTGATAT+TGG | 0.305884 | 1.3:+32811425 | None:intergenic |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.3:-32810764 | MS.gene84053:intron |
| ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1.3:+32810455 | None:intergenic |
| TCCTCTCATCAATCAACTTA+AGG | 0.325864 | 1.3:+32809741 | None:intergenic |
| ACATTGGAGGAACGTCTTCT+AGG | 0.346380 | 1.3:-32810236 | MS.gene84053:CDS |
| TAATGGAACTGCAACAATAA+GGG | 0.376410 | 1.3:-32810624 | MS.gene84053:CDS |
| CCATTCGCAAAGAAATTACT+AGG | 0.386228 | 1.3:-32810413 | MS.gene84053:intron |
| TGGTAAGAGTGTTGCAAAGA+AGG | 0.395122 | 1.3:-32810262 | MS.gene84053:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.398912 | 1.3:+32811449 | None:intergenic |
| AATATTGTGGAATTGAAAAT+GGG | 0.408122 | 1.3:-32809881 | MS.gene84053:CDS |
| AATTATTATCAGAGTCTTTG+TGG | 0.412362 | 1.3:-32809833 | MS.gene84053:CDS |
| AAAGAAGGCAAAGTGGAGAT+TGG | 0.415515 | 1.3:-32809776 | MS.gene84053:CDS |
| GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1.3:-32810535 | MS.gene84053:CDS |
| TGGAGAAAATTTATGAAAGA+AGG | 0.431214 | 1.3:-32809791 | MS.gene84053:CDS |
| GATGAAGCATAAAACATTCA+AGG | 0.432143 | 1.3:-32810058 | MS.gene84053:CDS |
| AAATGCCAAAGCAAGCTAAA+AGG | 0.432567 | 1.3:-32811287 | MS.gene84053:CDS |
| CAAGCTAAAAGGACAAGAAA+TGG | 0.436835 | 1.3:-32811276 | MS.gene84053:CDS |
| CAAAGTAGCAATGGTGAAGA+AGG | 0.457353 | 1.3:-32810854 | MS.gene84053:CDS |
| GATGACAAGGTTATAAGAAA+GGG | 0.472513 | 1.3:-32810293 | MS.gene84053:intron |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.3:+32810792 | None:intergenic |
| CGATGACAAGGTTATAAGAA+AGG | 0.476820 | 1.3:-32810294 | MS.gene84053:intron |
| GAGGTGAGTTTGAGATATTA+TGG | 0.477793 | 1.3:-32810581 | MS.gene84053:CDS |
| CCTAGTAATTTCTTTGCGAA+TGG | 0.482285 | 1.3:+32810413 | None:intergenic |
| CTCTTCATGACTTTCTTCTG+TGG | 0.498976 | 1.3:+32811347 | None:intergenic |
| CCGAAGGAGTTTATGAAAAG+AGG | 0.504433 | 1.3:-32809914 | MS.gene84053:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.3:+32810793 | None:intergenic |
| AATATCAAATCTGTTGATGA+AGG | 0.508408 | 1.3:-32811423 | MS.gene84053:CDS |
| AATGTTACTATTACTCGTGC+CGG | 0.509303 | 1.3:-32810443 | MS.gene84053:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.3:-32809894 | MS.gene84053:CDS |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.542328 | 1.3:-32809815 | MS.gene84053:CDS |
| AGCTGAAGACACAGAAGAAG+AGG | 0.546039 | 1.3:-32811400 | MS.gene84053:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.551596 | 1.3:-32810610 | MS.gene84053:CDS |
| TGTTCTCTTGAAAACTCACT+TGG | 0.555107 | 1.3:+32810659 | None:intergenic |
| GTAAATTTGAGATGATTCGA+CGG | 0.557247 | 1.3:-32810481 | MS.gene84053:CDS |
| GTATTTGCAGTGTGTACCGA+AGG | 0.559027 | 1.3:-32809930 | MS.gene84053:intron |
| AATGTGGTATGGGTGGTGGA+TGG | 0.565938 | 1.3:-32810547 | MS.gene84053:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.573667 | 1.3:-32809811 | MS.gene84053:CDS |
| GGAACTGCAACAATAAGGGT+TGG | 0.581562 | 1.3:-32810620 | MS.gene84053:CDS |
| TGATGACAGTTCAGATGAGG+TGG | 0.583984 | 1.3:-32811310 | MS.gene84053:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.3:+32810759 | None:intergenic |
| ATTTATGAAAGAAGGCAAAG+TGG | 0.595070 | 1.3:-32809783 | MS.gene84053:CDS |
| TCCTTAAGTTGATTGATGAG+AGG | 0.601248 | 1.3:-32809742 | MS.gene84053:CDS |
| AGGTAGTAACAAAGTAGCAA+TGG | 0.603454 | 1.3:-32810863 | MS.gene84053:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.3:-32810775 | MS.gene84053:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.612079 | 1.3:-32809868 | MS.gene84053:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1.3:-32810603 | MS.gene84053:CDS |
| GTTGCAAAGAAGGAAGACAT+TGG | 0.622416 | 1.3:-32810252 | MS.gene84053:CDS |
| GCAAAGAAGGAAGACATTGG+AGG | 0.630671 | 1.3:-32810249 | MS.gene84053:CDS |
| ATATTGTGGAATTGAAAATG+GGG | 0.634099 | 1.3:-32809880 | MS.gene84053:CDS |
| ATGACAAGGTTATAAGAAAG+GGG | 0.638628 | 1.3:-32810292 | MS.gene84053:intron |
| GCTGAAGACACAGAAGAAGA+GGG | 0.643743 | 1.3:-32811399 | MS.gene84053:CDS |
| AAGTGATGACAGTTCAGATG+AGG | 0.649994 | 1.3:-32811313 | MS.gene84053:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.650568 | 1.3:-32810600 | MS.gene84053:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTATTTCTAAAGTAT+TGG | + | chr1.3:32809819-32809838 | None:intergenic | 10.0% |
| !!! | AAAATATGCGATTTTTTTTT+TGG | - | chr1.3:32810255-32810274 | MS.gene84053:CDS | 15.0% |
| !!! | ATATTGGTTTCAAAAAAATT+GGG | - | chr1.3:32809706-32809725 | MS.gene84053:CDS | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1.3:32811253-32811272 | None:intergenic | 15.0% |
| !! | AAATATTGTGGAATTGAAAA+TGG | - | chr1.3:32811383-32811402 | MS.gene84053:CDS | 20.0% |
| !! | AATATTGTGGAATTGAAAAT+GGG | - | chr1.3:32811384-32811403 | MS.gene84053:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | + | chr1.3:32810813-32810832 | None:intergenic | 20.0% |
| !! | TTAACTTTCAAATTCATTAG+TGG | - | chr1.3:32809764-32809783 | MS.gene84053:CDS | 20.0% |
| !!! | GATATTGGTTTCAAAAAAAT+TGG | - | chr1.3:32809705-32809724 | MS.gene84053:CDS | 20.0% |
| !!! | TATTTTAAGGTGAAGATATT+TGG | - | chr1.3:32809791-32809810 | MS.gene84053:CDS | 20.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | - | chr1.3:32810378-32810397 | MS.gene84053:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.3:32809746-32809765 | None:intergenic | 25.0% |
| ! | AATTATTATCAGAGTCTTTG+TGG | - | chr1.3:32811432-32811451 | MS.gene84053:CDS | 25.0% |
| ! | ATATTGTGGAATTGAAAATG+GGG | - | chr1.3:32811385-32811404 | MS.gene84053:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.3:32810475-32810494 | None:intergenic | 25.0% |
| ! | GTGTTTAATGTTTCAATTGT+AGG | - | chr1.3:32811552-32811571 | MS.gene84053:intron | 25.0% |
| ! | TGGAGAAAATTTATGAAAGA+AGG | - | chr1.3:32811474-32811493 | MS.gene84053:intron | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.3:32810476-32810495 | None:intergenic | 25.0% |
| ! | TTCATCAACAGATTTGATAT+TGG | + | chr1.3:32809843-32809862 | None:intergenic | 25.0% |
| !! | AATATCAAATCTGTTGATGA+AGG | - | chr1.3:32809842-32809861 | MS.gene84053:CDS | 25.0% |
| !! | CAAGAAAATTTTCTTTTGGA+CGG | + | chr1.3:32811057-32811076 | None:intergenic | 25.0% |
| !! | CCAAAAGAAAATTTTCTTGA+GGG | - | chr1.3:32811058-32811077 | MS.gene84053:intron | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | - | chr1.3:32810624-32810643 | MS.gene84053:CDS | 25.0% |
| !! | GTGATTTTTCTCTCTTTTTT+TGG | - | chr1.3:32810062-32810081 | MS.gene84053:CDS | 25.0% |
| !! | TCCAAAAGAAAATTTTCTTG+AGG | - | chr1.3:32811057-32811076 | MS.gene84053:intron | 25.0% |
| !!! | CATTAGTGGATCATATTTTA+AGG | - | chr1.3:32809778-32809797 | MS.gene84053:CDS | 25.0% |
| !!! | TACTTTTAAGAGTTATGCAA+TGG | - | chr1.3:32810150-32810169 | MS.gene84053:intron | 25.0% |
| !!! | TATGCGATTTTTTTTTTGGT+AGG | - | chr1.3:32810259-32810278 | MS.gene84053:CDS | 25.0% |
| !!! | TCTCTTTTTTTGGTAGATTT+AGG | - | chr1.3:32810072-32810091 | MS.gene84053:CDS | 25.0% |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.3:32811371-32811390 | MS.gene84053:CDS | 30.0% | |
| ATGACAAGGTTATAAGAAAG+GGG | - | chr1.3:32810973-32810992 | MS.gene84053:intron | 30.0% | |
| ATTTATGAAAGAAGGCAAAG+TGG | - | chr1.3:32811482-32811501 | MS.gene84053:intron | 30.0% | |
| GATGAAGCATAAAACATTCA+AGG | - | chr1.3:32811207-32811226 | MS.gene84053:intron | 30.0% | |
| GATGACAAGGTTATAAGAAA+GGG | - | chr1.3:32810972-32810991 | MS.gene84053:intron | 30.0% | |
| GTCATCGACAAAAGAAATAA+AGG | + | chr1.3:32810958-32810977 | None:intergenic | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | - | chr1.3:32810641-32810660 | MS.gene84053:CDS | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | - | chr1.3:32810640-32810659 | MS.gene84053:CDS | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.3:32809734-32809753 | MS.gene84053:CDS | 30.0% | |
| ! | CCCTCAAGAAAATTTTCTTT+TGG | + | chr1.3:32811061-32811080 | None:intergenic | 30.0% |
| ! | GAAAAATCACCTGAGAATTT+TGG | + | chr1.3:32810052-32810071 | None:intergenic | 30.0% |
| ! | GCATAAAACATTCAAGGTTT+TGG | - | chr1.3:32811213-32811232 | MS.gene84053:intron | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | - | chr1.3:32810784-32810803 | MS.gene84053:CDS | 30.0% |
| ! | GTTGCAATTTTATGTCTGAA+AGG | - | chr1.3:32810176-32810195 | MS.gene84053:intron | 30.0% |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1.3:32810580-32810599 | MS.gene84053:CDS | 30.0% |
| ! | TATTTCTTTTGTCGATGACA+AGG | - | chr1.3:32810959-32810978 | MS.gene84053:intron | 30.0% |
| AAATGCCAAAGCAAGCTAAA+AGG | - | chr1.3:32809978-32809997 | MS.gene84053:intron | 35.0% | |
| AATGTTACTATTACTCGTGC+CGG | - | chr1.3:32810822-32810841 | MS.gene84053:CDS | 35.0% | |
| ACCCAGAAAAAATGTGGTAT+GGG | - | chr1.3:32810708-32810727 | MS.gene84053:intron | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.3:32810509-32810528 | None:intergenic | 35.0% | |
| AGGTAGTAACAAAGTAGCAA+TGG | - | chr1.3:32810402-32810421 | MS.gene84053:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.3:32810490-32810509 | MS.gene84053:CDS | 35.0% | |
| CAAGCTAAAAGGACAAGAAA+TGG | - | chr1.3:32809989-32810008 | MS.gene84053:intron | 35.0% | |
| CCATTCGCAAAGAAATTACT+AGG | - | chr1.3:32810852-32810871 | MS.gene84053:CDS | 35.0% | |
| CCTAGTAATTTCTTTGCGAA+TGG | + | chr1.3:32810855-32810874 | None:intergenic | 35.0% | |
| CGATGACAAGGTTATAAGAA+AGG | - | chr1.3:32810971-32810990 | MS.gene84053:intron | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1.3:32810587-32810606 | None:intergenic | 35.0% | |
| TACCCAGAAAAAATGTGGTA+TGG | - | chr1.3:32810707-32810726 | MS.gene84053:intron | 35.0% | |
| TATGGTACCCAGAAAAAATG+TGG | - | chr1.3:32810702-32810721 | MS.gene84053:intron | 35.0% | |
| TCCTCTCATCAATCAACTTA+AGG | + | chr1.3:32811527-32811546 | None:intergenic | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | + | chr1.3:32810609-32810628 | None:intergenic | 35.0% | |
| TTATGCCTGTATTGTACAGA+AGG | - | chr1.3:32811175-32811194 | MS.gene84053:intron | 35.0% | |
| TTTGGTGAAAAACACAGAAC+CGG | - | chr1.3:32811231-32811250 | MS.gene84053:intron | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+CGG | + | chr1.3:32811354-32811373 | None:intergenic | 35.0% |
| ! | GAGGTGAGTTTGAGATATTA+TGG | - | chr1.3:32810684-32810703 | MS.gene84053:intron | 35.0% |
| ! | GTTTTATGCTTCATCACATC+AGG | + | chr1.3:32811202-32811221 | None:intergenic | 35.0% |
| ! | TATAAGAAAGGGGTCTTTTG+TGG | - | chr1.3:32810983-32811002 | MS.gene84053:intron | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1.3:32810655-32810674 | MS.gene84053:CDS | 35.0% |
| !! | TCCTTAAGTTGATTGATGAG+AGG | - | chr1.3:32811523-32811542 | MS.gene84053:intron | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.3:32810501-32810520 | MS.gene84053:CDS | 35.0% |
| !!! | ACCCATACCACATTTTTTCT+GGG | + | chr1.3:32810712-32810731 | None:intergenic | 35.0% |
| !!! | ATCACCTGAGAATTTTGGTT+AGG | + | chr1.3:32810047-32810066 | None:intergenic | 35.0% |
| AAAAAATGTGGTATGGGTGG+TGG | - | chr1.3:32810714-32810733 | MS.gene84053:intron | 40.0% | |
| AAAGAAGGCAAAGTGGAGAT+TGG | - | chr1.3:32811489-32811508 | MS.gene84053:intron | 40.0% | |
| AAGTGATGACAGTTCAGATG+AGG | - | chr1.3:32809952-32809971 | MS.gene84053:intron | 40.0% | |
| ACCACCTAACCAAAATTCTC+AGG | - | chr1.3:32810040-32810059 | MS.gene84053:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | - | chr1.3:32810382-32810401 | MS.gene84053:intron | 40.0% | |
| CAAAGTAGCAATGGTGAAGA+AGG | - | chr1.3:32810411-32810430 | MS.gene84053:intron | 40.0% | |
| CAGAAAAAATGTGGTATGGG+TGG | - | chr1.3:32810711-32810730 | MS.gene84053:intron | 40.0% | |
| CCGAAGGAGTTTATGAAAAG+AGG | - | chr1.3:32811351-32811370 | MS.gene84053:CDS | 40.0% | |
| CTCTTCATGACTTTCTTCTG+TGG | + | chr1.3:32809921-32809940 | None:intergenic | 40.0% | |
| GTTGCAAAGAAGGAAGACAT+TGG | - | chr1.3:32811013-32811032 | MS.gene84053:intron | 40.0% | |
| TGAAAATGGGGAGAAAGTCA+TGG | - | chr1.3:32811397-32811416 | MS.gene84053:CDS | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | + | chr1.3:32810393-32810412 | None:intergenic | 40.0% | |
| !! | GTGGTGGATGGAAAATATTC+AGG | - | chr1.3:32810730-32810749 | MS.gene84053:intron | 40.0% |
| !! | TGGTAAGAGTGTTGCAAAGA+AGG | - | chr1.3:32811003-32811022 | MS.gene84053:intron | 40.0% |
| !!! | ACCTGAGAATTTTGGTTAGG+TGG | + | chr1.3:32810044-32810063 | None:intergenic | 40.0% |
| !!! | CACCCATACCACATTTTTTC+TGG | + | chr1.3:32810713-32810732 | None:intergenic | 40.0% |
| !!! | CTTGTCCTTTTAGCTTGCTT+TGG | + | chr1.3:32809986-32810005 | None:intergenic | 40.0% |
| ACATTGGAGGAACGTCTTCT+AGG | - | chr1.3:32811029-32811048 | MS.gene84053:intron | 45.0% | |
| AGCTGAAGACACAGAAGAAG+AGG | - | chr1.3:32809865-32809884 | MS.gene84053:CDS | 45.0% | |
| CAGGACCTTCTGTACAATAC+AGG | + | chr1.3:32811183-32811202 | None:intergenic | 45.0% | |
| CTTTGCGAATGGTTCGTTTC+CGG | + | chr1.3:32810844-32810863 | None:intergenic | 45.0% | |
| GCAAAGAAGGAAGACATTGG+AGG | - | chr1.3:32811016-32811035 | MS.gene84053:intron | 45.0% | |
| GCTGAAGACACAGAAGAAGA+GGG | - | chr1.3:32809866-32809885 | MS.gene84053:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | - | chr1.3:32811454-32811473 | MS.gene84053:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | - | chr1.3:32810645-32810664 | MS.gene84053:CDS | 45.0% | |
| GTATTTGCAGTGTGTACCGA+AGG | - | chr1.3:32811335-32811354 | MS.gene84053:CDS | 45.0% | |
| GTGAAAAACACAGAACCGGT+AGG | - | chr1.3:32811235-32811254 | MS.gene84053:intron | 45.0% | |
| TGATGACAGTTCAGATGAGG+TGG | - | chr1.3:32809955-32809974 | MS.gene84053:intron | 45.0% | |
| TGGCAAGAGAAAAGCGAGTA+TGG | - | chr1.3:32810009-32810028 | MS.gene84053:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | - | chr1.3:32811450-32811469 | MS.gene84053:CDS | 45.0% | |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1.3:32810665-32810684 | MS.gene84053:CDS | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1.3:32810662-32810681 | MS.gene84053:CDS | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | - | chr1.3:32810309-32810328 | MS.gene84053:intron | 5.0% |
| !! | AATGTGGTATGGGTGGTGGA+TGG | - | chr1.3:32810718-32810737 | MS.gene84053:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 32809700 | 32811587 | 32809700 | ID=MS.gene84053 |
| chr1.3 | mRNA | 32809700 | 32811587 | 32809700 | ID=MS.gene84053.t1;Parent=MS.gene84053 |
| chr1.3 | exon | 32811585 | 32811587 | 32811585 | ID=MS.gene84053.t1.exon1;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32811585 | 32811587 | 32811585 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32811262 | 32811487 | 32811262 | ID=MS.gene84053.t1.exon2;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32811262 | 32811487 | 32811262 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32810765 | 32810883 | 32810765 | ID=MS.gene84053.t1.exon3;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32810765 | 32810883 | 32810765 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32810414 | 32810687 | 32810414 | ID=MS.gene84053.t1.exon4;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32810414 | 32810687 | 32810414 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32810208 | 32810306 | 32810208 | ID=MS.gene84053.t1.exon5;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32810208 | 32810306 | 32810208 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32810035 | 32810093 | 32810035 | ID=MS.gene84053.t1.exon6;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32810035 | 32810093 | 32810035 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| chr1.3 | exon | 32809700 | 32809942 | 32809700 | ID=MS.gene84053.t1.exon7;Parent=MS.gene84053.t1 |
| chr1.3 | CDS | 32809700 | 32809942 | 32809700 | ID=cds.MS.gene84053.t1;Parent=MS.gene84053.t1 |
| Gene Sequence |
| Protein sequence |
