AlfalfaGEDB | MS.gene84055

M. sativa cultivar XinJiangDaYe / MS.gene84055

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84055.t1	KEH40804.1	81.9	243	37	3	14	249	156	398	2.80E-109	404.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84055.t1	Q2R9D2	33.3	93	61	1	37	128	290	382	3.9e-06	53.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84055.t1	A0A072VFJ7	81.9	243	37	3	14	249	156	398	2.0e-109	404.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene84055.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84055.t1	MTR_1g035570	81.557	244	38	3	13	249	155	398	1.84e-141	402
MS.gene84055.t1	MTR_1g035490	69.145	269	51	5	6	247	67	330	2.07e-126	362
MS.gene84055.t1	MTR_1g035620	42.529	261	118	9	14	244	150	408	4.30e-51	172
MS.gene84055.t1	MTR_6g061070	33.992	253	117	6	40	245	221	470	2.48e-37	137
MS.gene84055.t1	MTR_1g035640	32.680	306	126	9	20	246	161	465	1.08e-35	132
MS.gene84055.t1	MTR_1g050845	41.228	228	104	9	14	212	138	364	1.81e-33	128
MS.gene84055.t1	MTR_1g035520	40.426	94	52	2	156	245	290	383	1.87e-14	72.4
MS.gene84055.t1	MTR_1g108780	32.609	138	80	4	6	143	170	294	1.69e-12	67.0
MS.gene84055.t1	MTR_8g103940	32.609	138	77	6	8	143	212	335	1.86e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 56 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCCAATGGCACAAT+CGG	0.447371	1.3:-32819437	MS.gene84055:CDS
AAAGAAAGATCTTGTATGGG+AGG	0.599987	1.3:-32819128	MS.gene84055:CDS
AAAGAATGCAATGTGGAGAT+TGG	0.464528	1.3:-32818394	MS.gene84055:CDS
AAAGTATAATTTGCAAGTTG+AGG	0.553539	1.3:-32819084	MS.gene84055:CDS
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1.3:-32818500	MS.gene84055:CDS
AACAAAGAAAGATCTTGTAT+GGG	0.582045	1.3:-32819131	MS.gene84055:CDS
AATATTGTGGAGTTGAAAAT+GGG	0.451536	1.3:-32818499	MS.gene84055:CDS
AATTATTATGAGAGTATTCG+TGG	0.512630	1.3:-32818451	MS.gene84055:CDS
ACAGCTTCCGATTGTGCCAT+TGG	0.416961	1.3:+32819430	None:intergenic
ACTTACCAAGAAATAGCCAT+TGG	0.587587	1.3:+32819363	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGAAAGAATAGGTTCAA+TGG	-	chr1.3:32818548-32818567	MS.gene84055:intron	30.0%
AAGCTCAAAGGACAATAAAA+GGG	-	chr1.3:32819992-32820011	MS.gene84055:intron	30.0%
AGGATGTCATGAAAATATTG+TGG	-	chr1.3:32821181-32821200	MS.gene84055:intron	30.0%
AGTTGTGATGATTCACAAAT+AGG	-	chr1.3:32818694-32818713	MS.gene84055:intron	30.0%
AGTTTAGGCTTGTAAATCTA+AGG	-	chr1.3:32820034-32820053	MS.gene84055:intron	30.0%
ATATCTACTAAACCATGCTT+TGG	-	chr1.3:32820426-32820445	MS.gene84055:intron	30.0%
ATATTGTGGAGTTGAAAATG+GGG	-	chr1.3:32821195-32821214	MS.gene84055:intron	30.0%
ATGGACAAGGTTATAAGAAA+GGG	-	chr1.3:32820782-32820801	MS.gene84055:intron	30.0%
ATTCATGAAAGAATGCAATG+TGG	-	chr1.3:32821292-32821311	MS.gene84055:intron	30.0%
CTAGTAATTTCTTTCGGATT+GGG	+	chr1.3:32820708-32820727	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	32818318	32821397	32818318	ID=MS.gene84055
chr1.3	mRNA	32818318	32821397	32818318	ID=MS.gene84055.t1;Parent=MS.gene84055
chr1.3	exon	32821346	32821397	32821346	ID=MS.gene84055.t1.exon1;Parent=MS.gene84055.t1
chr1.3	CDS	32821346	32821397	32821346	ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1
chr1.3	exon	32819369	32819493	32819369	ID=MS.gene84055.t1.exon2;Parent=MS.gene84055.t1
chr1.3	CDS	32819369	32819493	32819369	ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1
chr1.3	exon	32818988	32819261	32818988	ID=MS.gene84055.t1.exon3;Parent=MS.gene84055.t1
chr1.3	CDS	32818988	32819261	32818988	ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1
chr1.3	exon	32818653	32818708	32818653	ID=MS.gene84055.t1.exon4;Parent=MS.gene84055.t1
chr1.3	CDS	32818653	32818708	32818653	ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1
chr1.3	exon	32818318	32818560	32818318	ID=MS.gene84055.t1.exon5;Parent=MS.gene84055.t1
chr1.3	CDS	32818318	32818560	32818318	ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1

Gene Sequence

>MS.gene84055

ATGGCAGTGTCGTTGCTCCGATTGCAGTTCAGCCAAGCTCAGCGGCAATTCGGTAAGGAAACGCTGATTTATGTATGATTATTGAGTATTGTATTGTAATTCTTCAATTTGGTTTCTGTGATACTGTTTTTGAACTGATTTTTGGGTTAATTGAGCAATTTTCTGTGATAGTGTTTCTCTATTGATGGATATTAGAATCTATTTGATTGAGATTAATAAACAAATTCAAAAACTGAAAGAATAGGTTCAATGGATATTATAGTTAGGAGTTTCTACTTTGTCGATGAAATGTTCTTAGCATTGCATATGCAATGTTGAGAGATTGATTCTGTGTGTTTTGCATGTGAAATAGACACTTAACAAGTATGACAGATGCAGTTGTGATGATTCACAAATAGGACAAAGCAAATCCAACATATATATATATATATATATATATATATATATATATATATATATATATATATAGAAAAAGAATATAGACATTAAAAATGTTTATATTTGTGATTTTGGAATATCTAAAAAAAAATAGTGAGATTGTTTATGTGTGCTTGTGTGTTCTGTTCAATGACAGATGCAATTGTGATGATATACACAAATAGGACAAAGCAAATCCACTTTTGTGGCAAATTAAAAGTTGTTTCTATTTCTAGCTTACATTGTAAGATGGACCAGACAGCACCTTATATAAAAATGGCAGATTAAGGGATCAAAGGGAAAGACACACGGTCTTGTAATCTAACCAATGTGTTTTTGAGTGTATGCATGCCTTGTAAATCTAATATAGCCAACTTTCACTGAATTGTACTAACTATTAAAACACTTTTTACTGTGTCATAAATGCCAAGTTCAATCCAACACCAAAGTAGTAACACCAGAAAATATTAGATAGAAAATGCATCATTTCTCTACAAATGACCTGTAATGGACAGTAATGAAGTCTTGGTTTCCTACCATACTACAAAAAATGTCTTTAACTTTATAACATTTCACACTTTACACTTCACAGGATTTATAACATTGAGACCTGAGAGAAAAACAGACTGAACACTCAAACTCTTTCACCTCACTTCTCTAAGCCTTAGCCCAATACTCACTCACTAGCATCAGTTAACAATGTCATTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTGTAAGCATATTAGAAAGAATTATTTTGCATATTTACATTATGTTTCATTTATAATGTATTATTTATGTATCATTGTTTTAAAAATGTTAATGTCTGACTTCTGAATTTCTTTATTGCAGAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAAAACTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCGTTGGTGGATCATATTTTAAGGTTAAGATATATGGTGCCAATACTTTAGAAATAAACTATTCCAATATCAAATCAGTTGATGAAGGTGCTGAAGCCACTGAAGAAGGTAAAGAAAGTGATGAATCAAGTGATGATGAAGCCACAAAAGAAGATGAAGAAAGTGATGAAGAGAGTGATGAGGTTGAAATGTCAAAGCAAGCTCAAAGGACAATAAAAGGGAAGAGAAAATTCTCAGGTGAGTTTAGGCTTGTAAATCTAAGGAAAAAAAAGTGTCTTGAAGTGCATAATTGAGAAGCATTGTTAGATACTTTTTTCTATAAAAATATGTGATTTTTTTGGAAGGAAAAGTATGTGATTTTTATAATATATGATAAAAAAAAATTGGTTTTCTTAAAATCGTTTAAAAATAATCTCTAAACTTTACAGGTAGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATACCCAATGGCACAATCGGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGGTAAGTTTGCTATACAAAGTATCTATCTTGGTAAGTTTGCTATACAAAGTATCTATGAATTTAAACTTTAATTAATAATATATCTACTAAACCATGCTTTGGAACAGTGGTTACCATTTGAGTTTTCAAGAAAACACTTGAAAGATTTTAAAGGGACTGCAACAATAAGGGTTGGTAATGAGAGGAGTGTGGAAGTGAGTTTGAAGTATTATGGTAACAAAGAAAGATCTTGTATGGGAGGTGGTTGGAAAATATTCAGGGAAAAGTATAATTTGCAAGTTGAGGATGTTTGTAAATTTGAGATGATTCAACGGAGACCGTTTTCATTCATTGTCACTATTACTCGTGCCGGAAACGACCCAATCCGAAAGAAATTACTAGGTTTTAATTCTTTCTTTCTCTTTTATTTGCTTTTTTGTATGTTATAATTTTTTTATGGACAAGGTTATAAGAAAGGGGTCTCTTTTTTTAGTAGTTAGTAGCCTAAGTTATCCAGGATTCAGTTTCTTTTTTTAGTTTAAAACCTAACTATATATTATATGTTTAAGTTCATACTTGAAATTTTTTAGCTCAAATATATTCAAATAACTCTAAAATTTTTGGGTATTATAAAAATTAGATTAGATGATATCATTTTGTGTTTATGCCTATATTGTACAGAAGGTCGTGATTTGATGAAGCATACATTCAAGGTTTTGGTGAAGAACACAGCCCCGGTAGGATTAATTACATAAAATATAGTTACATATGTAGATAGAGATGTTAGAACTACAAAATAAATAAATGATATTTTTTATTGTATTTGCAGAGTGCACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGGAAGTCATGGTTCGTAAAAGTGAATTATTATGAGAGTATTCGTGGCTGCAGGTTCAGTAAAGGTTGGATAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGCAAGTTTGTGTTTGATGTTTCAATTGTAGGAAAGAACCCATGA

Protein sequence

>MS.gene84055.t1

MAVSLLRLQFSQAQRQFGSNKVAMVKKARKYPMAQSEAVNENPSFEVIMTQSYTNGYFLWLPFEFSRKHLKDFKGTATIRVGNERSVEVSLKYYGNKERSCMGGGWKIFREKYNLQVEDVCKFEMIQRRPFSFIVTITRAGNDPIRKKLLEGRDLMKHTFKVLVKNTAPSAPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFSKGWIKFMKECNVEIGDTCLFKLIDESKFVFDVSIVGKNP