Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84055.t1 | KEH40804.1 | 81.9 | 243 | 37 | 3 | 14 | 249 | 156 | 398 | 2.80E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84055.t1 | Q2R9D2 | 33.3 | 93 | 61 | 1 | 37 | 128 | 290 | 382 | 3.9e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84055.t1 | A0A072VFJ7 | 81.9 | 243 | 37 | 3 | 14 | 249 | 156 | 398 | 2.0e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84055.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84055.t1 | MTR_1g035570 | 81.557 | 244 | 38 | 3 | 13 | 249 | 155 | 398 | 1.84e-141 | 402 |
| MS.gene84055.t1 | MTR_1g035490 | 69.145 | 269 | 51 | 5 | 6 | 247 | 67 | 330 | 2.07e-126 | 362 |
| MS.gene84055.t1 | MTR_1g035620 | 42.529 | 261 | 118 | 9 | 14 | 244 | 150 | 408 | 4.30e-51 | 172 |
| MS.gene84055.t1 | MTR_6g061070 | 33.992 | 253 | 117 | 6 | 40 | 245 | 221 | 470 | 2.48e-37 | 137 |
| MS.gene84055.t1 | MTR_1g035640 | 32.680 | 306 | 126 | 9 | 20 | 246 | 161 | 465 | 1.08e-35 | 132 |
| MS.gene84055.t1 | MTR_1g050845 | 41.228 | 228 | 104 | 9 | 14 | 212 | 138 | 364 | 1.81e-33 | 128 |
| MS.gene84055.t1 | MTR_1g035520 | 40.426 | 94 | 52 | 2 | 156 | 245 | 290 | 383 | 1.87e-14 | 72.4 |
| MS.gene84055.t1 | MTR_1g108780 | 32.609 | 138 | 80 | 4 | 6 | 143 | 170 | 294 | 1.69e-12 | 67.0 |
| MS.gene84055.t1 | MTR_8g103940 | 32.609 | 138 | 77 | 6 | 8 | 143 | 212 | 335 | 1.86e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGGATTGGGTCGTTTC+CGG | 0.165945 | 1.3:+32818998 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 1.3:-32818500 | MS.gene84055:CDS |
| GAAGCATACATTCAAGGTTT+TGG | 0.302239 | 1.3:-32818670 | MS.gene84055:CDS |
| TTACACCAATGGCTATTTCT+TGG | 0.306445 | 1.3:-32819368 | MS.gene84055:intron |
| GTGTTTGATGTTTCAATTGT+AGG | 0.309600 | 1.3:-32818331 | MS.gene84055:CDS |
| TTAAAGGGACTGCAACAATA+AGG | 0.310666 | 1.3:-32819199 | MS.gene84055:CDS |
| CTAGTAATTTCTTTCGGATT+GGG | 0.342779 | 1.3:+32818988 | None:intergenic |
| GAGGTGGTTGGAAAATATTC+AGG | 0.364157 | 1.3:-32819109 | MS.gene84055:CDS |
| TAAAACCTAGTAATTTCTTT+CGG | 0.364235 | 1.3:+32818982 | None:intergenic |
| CCTAGTAATTTCTTTCGGAT+TGG | 0.373001 | 1.3:+32818987 | None:intergenic |
| TAACAAAGAAAGATCTTGTA+TGG | 0.389809 | 1.3:-32819132 | MS.gene84055:CDS |
| CCAATCCGAAAGAAATTACT+AGG | 0.396990 | 1.3:-32818987 | MS.gene84055:intron |
| TACCGAATTGCCGCTGAGCT+TGG | 0.400116 | 1.3:+32821343 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 1.3:-32819198 | MS.gene84055:CDS |
| ACAGCTTCCGATTGTGCCAT+TGG | 0.416961 | 1.3:+32819430 | None:intergenic |
| TTTGATGAAGCATACATTCA+AGG | 0.419004 | 1.3:-32818676 | MS.gene84055:CDS |
| GAAGTGAGTTTGAAGTATTA+TGG | 0.428978 | 1.3:-32819155 | MS.gene84055:CDS |
| AAAATACCCAATGGCACAAT+CGG | 0.447371 | 1.3:-32819437 | MS.gene84055:CDS |
| GAGCTTGGCTGAACTGCAAT+CGG | 0.449915 | 1.3:+32821358 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1.3:-32818499 | MS.gene84055:CDS |
| CAGCTTCCGATTGTGCCATT+GGG | 0.454534 | 1.3:+32819431 | None:intergenic |
| AAAGAATGCAATGTGGAGAT+TGG | 0.464528 | 1.3:-32818394 | MS.gene84055:CDS |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1.3:-32819464 | MS.gene84055:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1.3:+32819396 | None:intergenic |
| AGCCAAGCTCAGCGGCAATT+CGG | 0.488549 | 1.3:-32821345 | MS.gene84055:intron |
| ATGAGAGTATTCGTGGCTGC+AGG | 0.493889 | 1.3:-32818444 | MS.gene84055:CDS |
| CCAAAGGAGTTTATGAAAAG+AGG | 0.496159 | 1.3:-32818532 | MS.gene84055:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1.3:+32819397 | None:intergenic |
| CGTGGCTGCAGGTTCAGTAA+AGG | 0.507598 | 1.3:-32818433 | MS.gene84055:CDS |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1.3:-32818451 | MS.gene84055:CDS |
| ATTGTCACTATTACTCGTGC+CGG | 0.525079 | 1.3:-32819017 | MS.gene84055:CDS |
| AGGATGTCATGAAAATATTG+TGG | 0.531604 | 1.3:-32818512 | MS.gene84055:CDS |
| ATAGTGACAATGAATGAAAA+CGG | 0.533216 | 1.3:+32819029 | None:intergenic |
| GATCTTGTATGGGAGGTGGT+TGG | 0.547438 | 1.3:-32819121 | MS.gene84055:CDS |
| AAAGTATAATTTGCAAGTTG+AGG | 0.553539 | 1.3:-32819084 | MS.gene84055:CDS |
| TGAAAATGGGGAGGAAGTCA+TGG | 0.563749 | 1.3:-32818486 | MS.gene84055:CDS |
| GAAAGATCTTGTATGGGAGG+TGG | 0.571003 | 1.3:-32819125 | MS.gene84055:CDS |
| GGTTGGTAATGAGAGGAGTG+TGG | 0.571349 | 1.3:-32819177 | MS.gene84055:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1.3:-32818652 | MS.gene84055:intron |
| GCTGCAGGTTCAGTAAAGGT+TGG | 0.575963 | 1.3:-32818429 | MS.gene84055:CDS |
| AACAAAGAAAGATCTTGTAT+GGG | 0.582045 | 1.3:-32819131 | MS.gene84055:CDS |
| AGGTAGTAACAAAGTGGCCA+TGG | 0.582904 | 1.3:-32819473 | MS.gene84055:CDS |
| ACTTACCAAGAAATAGCCAT+TGG | 0.587587 | 1.3:+32819363 | None:intergenic |
| GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1.3:-32819055 | MS.gene84055:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 1.3:-32819194 | MS.gene84055:CDS |
| GTATTTGCAGAGTGCACCAA+AGG | 0.590998 | 1.3:-32818548 | MS.gene84055:intron |
| AAAGAAAGATCTTGTATGGG+AGG | 0.599987 | 1.3:-32819128 | MS.gene84055:CDS |
| AGGTGGTTGGAAAATATTCA+GGG | 0.606836 | 1.3:-32819108 | MS.gene84055:CDS |
| CAATAAGGGTTGGTAATGAG+AGG | 0.608350 | 1.3:-32819184 | MS.gene84055:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1.3:-32819379 | MS.gene84055:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1.3:-32818495 | MS.gene84055:CDS |
| CTTTACAGGTAGTAACAAAG+TGG | 0.648804 | 1.3:-32819479 | MS.gene84055:intron |
| TGCAGTTCAGCCAAGCTCAG+CGG | 0.670925 | 1.3:-32821353 | MS.gene84055:CDS |
| GAAGGCTAGAAAATACCCAA+TGG | 0.687317 | 1.3:-32819446 | MS.gene84055:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1.3:-32818498 | MS.gene84055:CDS |
| ATTCATGAAAGAATGCAATG+TGG | 0.699756 | 1.3:-32818401 | MS.gene84055:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACATATAATATATAGTT+AGG | + | chr1.3:32820873-32820892 | None:intergenic | 10.0% |
| !!! | ATAAAAATATGTGATTTTTT+TGG | - | chr1.3:32820112-32820131 | MS.gene84055:intron | 10.0% |
| !!! | TGTATGTTATAATTTTTTTA+TGG | - | chr1.3:32820763-32820782 | MS.gene84055:intron | 10.0% |
| !!! | AATGTTTATATTTGTGATTT+TGG | - | chr1.3:32818808-32818827 | MS.gene84055:intron | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+TGG | + | chr1.3:32819836-32819855 | None:intergenic | 15.0% |
| !!! | ATTTTCTATCTAATATTTTC+TGG | + | chr1.3:32819195-32819214 | None:intergenic | 15.0% |
| !!! | CAAATAACTCTAAAATTTTT+GGG | - | chr1.3:32820928-32820947 | MS.gene84055:intron | 15.0% |
| !!! | TATTTTAAGGTTAAGATATA+TGG | - | chr1.3:32819808-32819827 | MS.gene84055:intron | 15.0% |
| !!! | TCAAATAACTCTAAAATTTT+TGG | - | chr1.3:32820927-32820946 | MS.gene84055:intron | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | - | chr1.3:32819684-32819703 | MS.gene84055:intron | 15.0% |
| !!! | TTATAATTTTTTTATGGACA+AGG | - | chr1.3:32820769-32820788 | MS.gene84055:intron | 15.0% |
| !! | AAATAATCTCTAAACTTTAC+AGG | - | chr1.3:32820200-32820219 | MS.gene84055:intron | 20.0% |
| !! | AATTCAAAAACTGAAAGAAT+AGG | - | chr1.3:32818540-32818559 | MS.gene84055:CDS | 20.0% |
| !! | ATATAAAAATGGCAGATTAA+GGG | - | chr1.3:32819003-32819022 | MS.gene84055:CDS | 20.0% |
| !! | ATATTCCTTAAATTTCCAAA+CGG | - | chr1.3:32819661-32819680 | MS.gene84055:intron | 20.0% |
| !! | TAAAACCTAGTAATTTCTTT+CGG | + | chr1.3:32820714-32820733 | None:intergenic | 20.0% |
| !! | TATATAAAAATGGCAGATTA+AGG | - | chr1.3:32819002-32819021 | MS.gene84055:CDS | 20.0% |
| !! | TGTATTGTAATTCTTCAATT+TGG | - | chr1.3:32818407-32818426 | MS.gene84055:CDS | 20.0% |
| !! | TTGGAAATTTAAGGAATATA+GGG | + | chr1.3:32819660-32819679 | None:intergenic | 20.0% |
| !! | TTTGGAAATTTAAGGAATAT+AGG | + | chr1.3:32819661-32819680 | None:intergenic | 20.0% |
| !!! | AAACACTTGAAAGATTTTAA+AGG | - | chr1.3:32820478-32820497 | MS.gene84055:intron | 20.0% |
| !!! | AAATATGTGATTTTTTTGGA+AGG | - | chr1.3:32820116-32820135 | MS.gene84055:intron | 20.0% |
| !!! | AACACTTGAAAGATTTTAAA+GGG | - | chr1.3:32820479-32820498 | MS.gene84055:intron | 20.0% |
| !!! | ATATTTGGTTTCAAAAAAAC+TGG | - | chr1.3:32819722-32819741 | MS.gene84055:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | - | chr1.3:32819683-32819702 | MS.gene84055:intron | 20.0% |
| !!! | TAAAGACATTTTTTGTAGTA+TGG | + | chr1.3:32819274-32819293 | None:intergenic | 20.0% |
| !!! | TAATCTGCCATTTTTATATA+AGG | + | chr1.3:32819002-32819021 | None:intergenic | 20.0% |
| !!! | TATTTGGTTTCAAAAAAACT+GGG | - | chr1.3:32819723-32819742 | MS.gene84055:intron | 20.0% |
| !!! | TTTTATGTAATTAATCCTAC+CGG | + | chr1.3:32821063-32821082 | None:intergenic | 20.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1.3:32821193-32821212 | MS.gene84055:intron | 25.0% |
| ! | AACAAAGAAAGATCTTGTAT+GGG | - | chr1.3:32820562-32820581 | MS.gene84055:intron | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | + | chr1.3:32819763-32819782 | None:intergenic | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | + | chr1.3:32819455-32819474 | None:intergenic | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1.3:32821194-32821213 | MS.gene84055:intron | 25.0% |
| ! | AGATATATGTGGAGAAATAT+TGG | - | chr1.3:32819620-32819639 | MS.gene84055:intron | 25.0% |
| ! | ATAGTGACAATGAATGAAAA+CGG | + | chr1.3:32820667-32820686 | None:intergenic | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1.3:32820299-32820318 | None:intergenic | 25.0% |
| ! | GTTCAATGGATATTATAGTT+AGG | - | chr1.3:32818562-32818581 | MS.gene84055:intron | 25.0% |
| ! | TAAAAAAAGAAACTGAATCC+TGG | + | chr1.3:32820842-32820861 | None:intergenic | 25.0% |
| ! | TAACAAAGAAAGATCTTGTA+TGG | - | chr1.3:32820561-32820580 | MS.gene84055:intron | 25.0% |
| ! | TATTTCTCCACATATATCTT+AGG | + | chr1.3:32819619-32819638 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1.3:32820300-32820319 | None:intergenic | 25.0% |
| ! | TTGGCTATATTAGATTTACA+AGG | + | chr1.3:32819089-32819108 | None:intergenic | 25.0% |
| ! | TTGTGATGATATACACAAAT+AGG | - | chr1.3:32818898-32818917 | MS.gene84055:intron | 25.0% |
| ! | TTTATGTAATTAATCCTACC+GGG | + | chr1.3:32821062-32821081 | None:intergenic | 25.0% |
| !! | AAAGTATAATTTGCAAGTTG+AGG | - | chr1.3:32820609-32820628 | MS.gene84055:intron | 25.0% |
| !! | GTAAATTTGAGATGATTCAA+CGG | - | chr1.3:32820638-32820657 | MS.gene84055:intron | 25.0% |
| !! | TGTTTTCTTGAAAACTCAAA+TGG | + | chr1.3:32820463-32820482 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1.3:32819859-32819878 | MS.gene84055:intron | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1.3:32821242-32821261 | MS.gene84055:intron | 25.0% |
| !!! | ACTGTTTTTGAACTGATTTT+TGG | - | chr1.3:32818440-32818459 | MS.gene84055:CDS | 25.0% |
| !!! | CTGTTTTTGAACTGATTTTT+GGG | - | chr1.3:32818441-32818460 | MS.gene84055:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | - | chr1.3:32819687-32819706 | MS.gene84055:intron | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1.3:32819860-32819879 | None:intergenic | 25.0% |
| AACTGAAAGAATAGGTTCAA+TGG | - | chr1.3:32818548-32818567 | MS.gene84055:intron | 30.0% | |
| AAGCTCAAAGGACAATAAAA+GGG | - | chr1.3:32819992-32820011 | MS.gene84055:intron | 30.0% | |
| AGGATGTCATGAAAATATTG+TGG | - | chr1.3:32821181-32821200 | MS.gene84055:intron | 30.0% | |
| AGTTGTGATGATTCACAAAT+AGG | - | chr1.3:32818694-32818713 | MS.gene84055:intron | 30.0% | |
| AGTTTAGGCTTGTAAATCTA+AGG | - | chr1.3:32820034-32820053 | MS.gene84055:intron | 30.0% | |
| ATATCTACTAAACCATGCTT+TGG | - | chr1.3:32820426-32820445 | MS.gene84055:intron | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1.3:32821195-32821214 | MS.gene84055:intron | 30.0% | |
| ATGGACAAGGTTATAAGAAA+GGG | - | chr1.3:32820782-32820801 | MS.gene84055:intron | 30.0% | |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1.3:32821292-32821311 | MS.gene84055:intron | 30.0% | |
| CTAGTAATTTCTTTCGGATT+GGG | + | chr1.3:32820708-32820727 | None:intergenic | 30.0% | |
| CTCTTAACTTTCAAATTCGT+TGG | - | chr1.3:32819778-32819797 | MS.gene84055:intron | 30.0% | |
| CTGAATTTCTTTATTGCAGA+GGG | - | chr1.3:32819591-32819610 | MS.gene84055:intron | 30.0% | |
| GACAGCACCTTATATAAAAA+TGG | - | chr1.3:32818992-32819011 | MS.gene84055:CDS | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | - | chr1.3:32821362-32821381 | MS.gene84055:CDS | 30.0% | |
| TAGTACAATTCAGTGAAAGT+TGG | + | chr1.3:32819108-32819127 | None:intergenic | 30.0% | |
| TATGGACAAGGTTATAAGAA+AGG | - | chr1.3:32820781-32820800 | MS.gene84055:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | - | chr1.3:32819625-32819644 | MS.gene84055:intron | 30.0% | |
| TCTGAATTTCTTTATTGCAG+AGG | - | chr1.3:32819590-32819609 | MS.gene84055:intron | 30.0% | |
| TTAACTTTCAAATTCGTTGG+TGG | - | chr1.3:32819781-32819800 | MS.gene84055:intron | 30.0% | |
| TTATGCCTATATTGTACAGA+AGG | - | chr1.3:32820988-32821007 | MS.gene84055:intron | 30.0% | |
| TTATGTAATTAATCCTACCG+GGG | + | chr1.3:32821061-32821080 | None:intergenic | 30.0% | |
| TTTGATGAAGCATACATTCA+AGG | - | chr1.3:32821017-32821036 | MS.gene84055:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | - | chr1.3:32819751-32819770 | MS.gene84055:intron | 30.0% | |
| ! | AACATGTTCCAGATTTTCAT+AGG | - | chr1.3:32819444-32819463 | MS.gene84055:CDS | 30.0% |
| ! | ACTTTCTTCATCTTCTTTTG+TGG | + | chr1.3:32819938-32819957 | None:intergenic | 30.0% |
| ! | GAAGTGAGTTTGAAGTATTA+TGG | - | chr1.3:32820538-32820557 | MS.gene84055:intron | 30.0% |
| ! | GCTATACAAAGTATCTATCT+TGG | - | chr1.3:32820355-32820374 | MS.gene84055:intron | 30.0% |
| ! | TGATAGTGTTTCTCTATTGA+TGG | - | chr1.3:32818483-32818502 | MS.gene84055:CDS | 30.0% |
| !! | TTCTAGCTTACATTGTAAGA+TGG | - | chr1.3:32818965-32818984 | MS.gene84055:intron | 30.0% |
| !!! | ATTTTCTGGTGTTACTACTT+TGG | + | chr1.3:32819181-32819200 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+TGG | + | chr1.3:32819679-32819698 | None:intergenic | 30.0% |
| !!! | CTTTTAATTTGCCACAAAAG+TGG | + | chr1.3:32818935-32818954 | None:intergenic | 30.0% |
| !!! | GACATTTTTTGTAGTATGGT+AGG | + | chr1.3:32819270-32819289 | None:intergenic | 30.0% |
| !!! | TTTTTATATAAGGTGCTGTC+TGG | + | chr1.3:32818992-32819011 | None:intergenic | 30.0% |
| AAAATACCCAATGGCACAAT+CGG | - | chr1.3:32820256-32820275 | MS.gene84055:intron | 35.0% | |
| AAAGAAAGATCTTGTATGGG+AGG | - | chr1.3:32820565-32820584 | MS.gene84055:intron | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1.3:32821299-32821318 | MS.gene84055:intron | 35.0% | |
| AAAGGGAAGAGAAAATTCTC+AGG | - | chr1.3:32820009-32820028 | MS.gene84055:intron | 35.0% | |
| AAATGTCAAAGCAAGCTCAA+AGG | - | chr1.3:32819980-32819999 | MS.gene84055:intron | 35.0% | |
| AACTGAATCCTGGATAACTT+AGG | + | chr1.3:32820832-32820851 | None:intergenic | 35.0% | |
| AATGGACAGTAATGAAGTCT+TGG | - | chr1.3:32819241-32819260 | MS.gene84055:CDS | 35.0% | |
| ACTTACCAAGAAATAGCCAT+TGG | + | chr1.3:32820333-32820352 | None:intergenic | 35.0% | |
| ACTTCATTACTGTCCATTAC+AGG | + | chr1.3:32819239-32819258 | None:intergenic | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1.3:32819893-32819912 | None:intergenic | 35.0% | |
| AGGTGGTTGGAAAATATTCA+GGG | - | chr1.3:32820585-32820604 | MS.gene84055:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1.3:32820314-32820333 | MS.gene84055:intron | 35.0% | |
| CAACACCGTTTGGAAATTTA+AGG | + | chr1.3:32819669-32819688 | None:intergenic | 35.0% | |
| CAAGCTCAAAGGACAATAAA+AGG | - | chr1.3:32819991-32820010 | MS.gene84055:intron | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+AGG | - | chr1.3:32821161-32821180 | MS.gene84055:intron | 35.0% | |
| CCAATCCGAAAGAAATTACT+AGG | - | chr1.3:32820706-32820725 | MS.gene84055:intron | 35.0% | |
| CCTAGTAATTTCTTTCGGAT+TGG | + | chr1.3:32820709-32820728 | None:intergenic | 35.0% | |
| CTTTACAGGTAGTAACAAAG+TGG | - | chr1.3:32820214-32820233 | MS.gene84055:intron | 35.0% | |
| GAAAATTCTCAGGTGAGTTT+AGG | - | chr1.3:32820019-32820038 | MS.gene84055:intron | 35.0% | |
| GCATACACTCAAAAACACAT+TGG | + | chr1.3:32819063-32819082 | None:intergenic | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | - | chr1.3:32820495-32820514 | MS.gene84055:intron | 35.0% | |
| TCTCTACAAATGACCTGTAA+TGG | - | chr1.3:32819223-32819242 | MS.gene84055:CDS | 35.0% | |
| TGGACAAGGTTATAAGAAAG+GGG | - | chr1.3:32820783-32820802 | MS.gene84055:intron | 35.0% | |
| TGGAGAGAAATGGTGATATT+TGG | - | chr1.3:32819707-32819726 | MS.gene84055:intron | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | - | chr1.3:32820494-32820513 | MS.gene84055:intron | 35.0% | |
| TTTCACACTTTACACTTCAC+AGG | - | chr1.3:32819305-32819324 | MS.gene84055:intron | 35.0% | |
| ! | CCTCTTTTCATAAACTCCTT+TGG | + | chr1.3:32821164-32821183 | None:intergenic | 35.0% |
| ! | GAAGCATACATTCAAGGTTT+TGG | - | chr1.3:32821023-32821042 | MS.gene84055:intron | 35.0% |
| !! | ACAAAGCAAATCCACTTTTG+TGG | - | chr1.3:32818921-32818940 | MS.gene84055:intron | 35.0% |
| !! | ATATTTTGGGTGGAGAGAAA+TGG | - | chr1.3:32819697-32819716 | MS.gene84055:intron | 35.0% |
| !! | CGTTGGTGGATCATATTTTA+AGG | - | chr1.3:32819795-32819814 | MS.gene84055:intron | 35.0% |
| !! | TTACACCAATGGCTATTTCT+TGG | - | chr1.3:32820325-32820344 | MS.gene84055:intron | 35.0% |
| AAGTGATGAAGAGAGTGATG+AGG | - | chr1.3:32819954-32819973 | MS.gene84055:intron | 40.0% | |
| ATGGCAGATTAAGGGATCAA+AGG | - | chr1.3:32819011-32819030 | MS.gene84055:CDS | 40.0% | |
| ATTGTCACTATTACTCGTGC+CGG | - | chr1.3:32820676-32820695 | MS.gene84055:intron | 40.0% | |
| CACGACCTTCTGTACAATAT+AGG | + | chr1.3:32820996-32821015 | None:intergenic | 40.0% | |
| GAAGGCTAGAAAATACCCAA+TGG | - | chr1.3:32820247-32820266 | MS.gene84055:intron | 40.0% | |
| GAGGGTTCCTAAGATATATG+TGG | - | chr1.3:32819609-32819628 | MS.gene84055:intron | 40.0% | |
| GAGGTGGTTGGAAAATATTC+AGG | - | chr1.3:32820584-32820603 | MS.gene84055:intron | 40.0% | |
| GATGCTAGTGAGTGAGTATT+GGG | + | chr1.3:32819406-32819425 | None:intergenic | 40.0% | |
| GTTAGTAGCCTAAGTTATCC+AGG | - | chr1.3:32820821-32820840 | MS.gene84055:intron | 40.0% | |
| TGATGCTAGTGAGTGAGTAT+TGG | + | chr1.3:32819407-32819426 | None:intergenic | 40.0% | |
| TGGCAGATTAAGGGATCAAA+GGG | - | chr1.3:32819012-32819031 | MS.gene84055:CDS | 40.0% | |
| !! | CAATAAGGGTTGGTAATGAG+AGG | - | chr1.3:32820509-32820528 | MS.gene84055:intron | 40.0% |
| !! | CTTTGGTGTTGGATTGAACT+TGG | + | chr1.3:32819164-32819183 | None:intergenic | 40.0% |
| !! | GTTCAGTCTGTTTTTCTCTC+AGG | + | chr1.3:32819347-32819366 | None:intergenic | 40.0% |
| !! | TAAACCATGCTTTGGAACAG+TGG | - | chr1.3:32820434-32820453 | MS.gene84055:intron | 40.0% |
| !! | TGGTGTTACTACTTTGGTGT+TGG | + | chr1.3:32819175-32819194 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1.3:32820240-32820259 | None:intergenic | 40.0% |
| AGGTAGTAACAAAGTGGCCA+TGG | - | chr1.3:32820220-32820239 | MS.gene84055:intron | 45.0% | |
| GAAAGATCTTGTATGGGAGG+TGG | - | chr1.3:32820568-32820587 | MS.gene84055:intron | 45.0% | |
| GGATCAAAGGGAAAGACACA+CGG | - | chr1.3:32819024-32819043 | MS.gene84055:CDS | 45.0% | |
| GTAACCACTGTTCCAAAGCA+TGG | + | chr1.3:32820441-32820460 | None:intergenic | 45.0% | |
| GTATTTGCAGAGTGCACCAA+AGG | - | chr1.3:32821145-32821164 | MS.gene84055:intron | 45.0% | |
| TGAAAATGGGGAGGAAGTCA+TGG | - | chr1.3:32821207-32821226 | MS.gene84055:intron | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1.3:32821198-32821217 | MS.gene84055:intron | 45.0% | |
| !! | AGTGAGTGAGTATTGGGCTA+AGG | + | chr1.3:32819400-32819419 | None:intergenic | 45.0% |
| !! | AATATATGATAAAAAAAAAT+TGG | - | chr1.3:32820158-32820177 | MS.gene84055:intron | 5.0% |
| !! | ATATATATATATATATATGT+TGG | + | chr1.3:32818731-32818750 | None:intergenic | 5.0% |
| ACAGCTTCCGATTGTGCCAT+TGG | + | chr1.3:32820266-32820285 | None:intergenic | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1.3:32820229-32820248 | MS.gene84055:intron | 50.0% | |
| GAGCTTGGCTGAACTGCAAT+CGG | + | chr1.3:32818338-32818357 | None:intergenic | 50.0% | |
| GATCTTGTATGGGAGGTGGT+TGG | - | chr1.3:32820572-32820591 | MS.gene84055:intron | 50.0% | |
| GCTGCAGGTTCAGTAAAGGT+TGG | - | chr1.3:32821264-32821283 | MS.gene84055:intron | 50.0% | |
| GGCTAAGGCTTAGAGAAGTG+AGG | + | chr1.3:32819385-32819404 | None:intergenic | 50.0% | |
| GGGACTGCAACAATAAGGGT+TGG | - | chr1.3:32820499-32820518 | MS.gene84055:intron | 50.0% | |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1.3:32821041-32821060 | MS.gene84055:intron | 50.0% | |
| ! | CAGCTTCCGATTGTGCCATT+GGG | + | chr1.3:32820265-32820284 | None:intergenic | 50.0% |
| ! | CTTTCGGATTGGGTCGTTTC+CGG | + | chr1.3:32820698-32820717 | None:intergenic | 50.0% |
| !! | ATGAGAGTATTCGTGGCTGC+AGG | - | chr1.3:32821249-32821268 | MS.gene84055:intron | 50.0% |
| !! | GGTTGGTAATGAGAGGAGTG+TGG | - | chr1.3:32820516-32820535 | MS.gene84055:intron | 50.0% |
| AGCCAAGCTCAGCGGCAATT+CGG | - | chr1.3:32818348-32818367 | MS.gene84055:CDS | 55.0% | |
| AGCTCAGCGGCAATTCGGTA+AGG | - | chr1.3:32818353-32818372 | MS.gene84055:CDS | 55.0% | |
| CGTGGCTGCAGGTTCAGTAA+AGG | - | chr1.3:32821260-32821279 | MS.gene84055:intron | 55.0% | |
| TACCGAATTGCCGCTGAGCT+TGG | + | chr1.3:32818353-32818372 | None:intergenic | 55.0% | |
| TGCAGTTCAGCCAAGCTCAG+CGG | - | chr1.3:32818340-32818359 | MS.gene84055:CDS | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1.3:32819880-32819899 | MS.gene84055:intron | 55.0% |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1.3:32821045-32821064 | MS.gene84055:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 32818318 | 32821397 | 32818318 | ID=MS.gene84055 |
| chr1.3 | mRNA | 32818318 | 32821397 | 32818318 | ID=MS.gene84055.t1;Parent=MS.gene84055 |
| chr1.3 | exon | 32821346 | 32821397 | 32821346 | ID=MS.gene84055.t1.exon1;Parent=MS.gene84055.t1 |
| chr1.3 | CDS | 32821346 | 32821397 | 32821346 | ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1 |
| chr1.3 | exon | 32819369 | 32819493 | 32819369 | ID=MS.gene84055.t1.exon2;Parent=MS.gene84055.t1 |
| chr1.3 | CDS | 32819369 | 32819493 | 32819369 | ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1 |
| chr1.3 | exon | 32818988 | 32819261 | 32818988 | ID=MS.gene84055.t1.exon3;Parent=MS.gene84055.t1 |
| chr1.3 | CDS | 32818988 | 32819261 | 32818988 | ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1 |
| chr1.3 | exon | 32818653 | 32818708 | 32818653 | ID=MS.gene84055.t1.exon4;Parent=MS.gene84055.t1 |
| chr1.3 | CDS | 32818653 | 32818708 | 32818653 | ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1 |
| chr1.3 | exon | 32818318 | 32818560 | 32818318 | ID=MS.gene84055.t1.exon5;Parent=MS.gene84055.t1 |
| chr1.3 | CDS | 32818318 | 32818560 | 32818318 | ID=cds.MS.gene84055.t1;Parent=MS.gene84055.t1 |
| Gene Sequence |
| Protein sequence |
