Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84099.t1 | RHN78372.1 | 85.7 | 580 | 64 | 2 | 1 | 580 | 1 | 561 | 3.70E-285 | 990.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84099.t1 | Q336N8 | 51.9 | 462 | 219 | 2 | 6 | 465 | 101 | 561 | 1.6e-135 | 484.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84099.t1 | A0A396JLW8 | 85.7 | 580 | 64 | 2 | 1 | 580 | 1 | 561 | 2.7e-285 | 990.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84099.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84099.t1 | MTR_1g038370 | 87.780 | 581 | 48 | 4 | 1 | 580 | 1 | 559 | 0.0 | 1042 |
| MS.gene84099.t1 | MTR_1g038400 | 76.789 | 573 | 104 | 4 | 2 | 572 | 22 | 567 | 0.0 | 871 |
| MS.gene84099.t1 | MTR_5g029370 | 53.527 | 482 | 223 | 1 | 2 | 483 | 83 | 563 | 0.0 | 548 |
| MS.gene84099.t1 | MTR_5g029370 | 53.527 | 482 | 223 | 1 | 2 | 483 | 83 | 563 | 0.0 | 548 |
| MS.gene84099.t1 | MTR_7g407000 | 81.250 | 144 | 9 | 2 | 181 | 323 | 28 | 154 | 8.59e-79 | 245 |
| MS.gene84099.t1 | MTR_3g075210 | 38.056 | 360 | 187 | 8 | 8 | 346 | 18 | 362 | 3.48e-67 | 238 |
| MS.gene84099.t1 | MTR_8g089260 | 31.194 | 561 | 278 | 14 | 4 | 477 | 29 | 568 | 5.37e-57 | 207 |
| MS.gene84099.t1 | MTR_1g078070 | 30.540 | 537 | 280 | 15 | 6 | 463 | 148 | 670 | 2.29e-55 | 202 |
| MS.gene84099.t1 | MTR_1g078070 | 29.981 | 537 | 283 | 15 | 6 | 463 | 148 | 670 | 3.18e-55 | 202 |
| MS.gene84099.t1 | MTR_5g010300 | 37.536 | 349 | 174 | 10 | 109 | 431 | 323 | 653 | 1.97e-54 | 200 |
| MS.gene84099.t1 | MTR_5g010300 | 37.536 | 349 | 174 | 10 | 109 | 431 | 323 | 653 | 2.83e-54 | 199 |
| MS.gene84099.t1 | MTR_5g010300 | 37.536 | 349 | 174 | 10 | 109 | 431 | 323 | 653 | 3.08e-54 | 199 |
| MS.gene84099.t1 | MTR_5g010300 | 43.019 | 265 | 122 | 6 | 109 | 354 | 323 | 577 | 3.70e-54 | 199 |
| MS.gene84099.t1 | MTR_1g094740 | 45.745 | 188 | 98 | 1 | 152 | 339 | 291 | 474 | 5.96e-53 | 196 |
| MS.gene84099.t1 | MTR_2g047130 | 32.759 | 406 | 200 | 9 | 4 | 344 | 45 | 442 | 5.95e-52 | 192 |
| MS.gene84099.t1 | MTR_2g047130 | 32.759 | 406 | 200 | 9 | 4 | 344 | 48 | 445 | 6.11e-52 | 192 |
| MS.gene84099.t1 | MTR_7g097070 | 31.915 | 329 | 185 | 11 | 156 | 462 | 338 | 649 | 4.22e-30 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84099.t1 | AT5G46910 | 53.263 | 475 | 220 | 2 | 7 | 480 | 102 | 575 | 0.0 | 535 |
| MS.gene84099.t1 | AT5G46910 | 54.077 | 466 | 213 | 1 | 7 | 472 | 102 | 566 | 0.0 | 534 |
| MS.gene84099.t1 | AT2G34880 | 31.509 | 530 | 280 | 15 | 7 | 467 | 60 | 575 | 1.34e-59 | 212 |
| MS.gene84099.t1 | AT3G48430 | 34.417 | 369 | 200 | 6 | 8 | 339 | 20 | 383 | 2.80e-58 | 211 |
| MS.gene84099.t1 | AT1G30810 | 30.056 | 539 | 289 | 13 | 4 | 467 | 55 | 580 | 8.04e-58 | 207 |
| MS.gene84099.t1 | AT1G30810 | 30.056 | 539 | 289 | 13 | 4 | 467 | 55 | 580 | 8.04e-58 | 207 |
| MS.gene84099.t1 | AT1G30810 | 30.056 | 539 | 289 | 13 | 4 | 467 | 55 | 580 | 8.04e-58 | 207 |
| MS.gene84099.t1 | AT1G63490 | 36.702 | 376 | 169 | 11 | 93 | 431 | 52 | 395 | 2.30e-57 | 208 |
| MS.gene84099.t1 | AT1G63490 | 36.800 | 375 | 168 | 11 | 94 | 431 | 306 | 648 | 2.64e-57 | 208 |
| MS.gene84099.t1 | AT1G63490 | 36.800 | 375 | 168 | 11 | 94 | 431 | 306 | 648 | 2.69e-57 | 208 |
| MS.gene84099.t1 | AT4G20400 | 28.033 | 610 | 330 | 19 | 4 | 529 | 52 | 636 | 4.20e-56 | 204 |
| MS.gene84099.t1 | AT1G08620 | 32.683 | 410 | 196 | 8 | 6 | 343 | 158 | 559 | 2.36e-54 | 199 |
| MS.gene84099.t1 | AT1G08620 | 32.683 | 410 | 196 | 8 | 6 | 343 | 144 | 545 | 2.82e-54 | 199 |
| MS.gene84099.t1 | AT1G08620 | 32.683 | 410 | 196 | 8 | 6 | 343 | 144 | 545 | 2.82e-54 | 199 |
| MS.gene84099.t1 | AT1G08620 | 32.683 | 410 | 196 | 8 | 6 | 343 | 144 | 545 | 2.82e-54 | 199 |
| MS.gene84099.t1 | AT4G20400 | 28.261 | 598 | 320 | 19 | 16 | 529 | 7 | 579 | 3.93e-53 | 195 |
| MS.gene84099.t1 | AT5G04240 | 46.277 | 188 | 97 | 1 | 152 | 339 | 259 | 442 | 5.60e-52 | 192 |
| MS.gene84099.t1 | AT2G38950 | 26.628 | 522 | 307 | 15 | 2 | 466 | 102 | 604 | 6.43e-35 | 140 |
| MS.gene84099.t1 | AT1G63490 | 54.023 | 87 | 40 | 0 | 254 | 340 | 15 | 101 | 7.70e-25 | 110 |
Find 85 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACAATTGTACGGCCTCTT+AGG | 0.199499 | 1.4:+38004685 | MS.gene84099:CDS |
| AATCCAGCATGATATGAATT+TGG | 0.200344 | 1.4:-38005785 | None:intergenic |
| GATGCATTCATATATGTTAT+AGG | 0.229711 | 1.4:-38006954 | None:intergenic |
| TGTCTTAACGGAAGAGAAAA+AGG | 0.267528 | 1.4:+38004650 | MS.gene84099:CDS |
| TCCTTCAATATCTTCCCTTT+TGG | 0.303945 | 1.4:+38007393 | MS.gene84099:CDS |
| ACTGAAAACAGAATAATAAT+TGG | 0.313275 | 1.4:+38007152 | MS.gene84099:intron |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1.4:-38006413 | None:intergenic |
| GAGAAAGGAACAGTTGAGTA+TGG | 0.324983 | 1.4:+38004973 | MS.gene84099:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1.4:-38006422 | None:intergenic |
| ATATAGGACTCGTTGTCTTT+TGG | 0.352203 | 1.4:-38007332 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.359872 | 1.4:-38006698 | None:intergenic |
| AGCTCTTCAAATACATCATT+AGG | 0.370354 | 1.4:+38006602 | MS.gene84099:CDS |
| TGACATGCAGCCTCTGCAAT+AGG | 0.375602 | 1.4:+38006630 | MS.gene84099:CDS |
| AACAAGCAATTTCAATTTGA+AGG | 0.380018 | 1.4:+38005047 | MS.gene84099:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1.4:+38006339 | MS.gene84099:CDS |
| CTCCATTGCGTTTAGTTGAC+AGG | 0.390855 | 1.4:+38005254 | MS.gene84099:CDS |
| GACAAAAGAAGCAGGATTAG+AGG | 0.392437 | 1.4:-38004631 | None:intergenic |
| TTGGTGATTGGTTTCCACTT+GGG | 0.409363 | 1.4:+38006351 | MS.gene84099:CDS |
| GGAAGATATTGAAGGAACTT+TGG | 0.410410 | 1.4:-38007386 | None:intergenic |
| TGCTGCCAAAAGTCTTCAAC+AGG | 0.414775 | 1.4:+38006889 | MS.gene84099:CDS |
| CTGATCCTATGCTTTACATT+GGG | 0.424948 | 1.4:+38005378 | MS.gene84099:CDS |
| CACAATTGTACGGCCTCTTA+GGG | 0.426080 | 1.4:+38004686 | MS.gene84099:CDS |
| TAGGAGAATATATTTGTTGA+AGG | 0.434436 | 1.4:-38006935 | None:intergenic |
| CTTGTTCCAAGCTTATCATC+AGG | 0.440827 | 1.4:-38005030 | None:intergenic |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1.4:+38006332 | MS.gene84099:CDS |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1.4:+38006409 | MS.gene84099:CDS |
| TTTGATTTGAAAACCCTAAG+AGG | 0.462559 | 1.4:-38004699 | None:intergenic |
| TGGTGATTGGTTTCCACTTG+GGG | 0.467102 | 1.4:+38006352 | MS.gene84099:CDS |
| TATCATGCTGGATTTAATCA+TGG | 0.467973 | 1.4:+38005794 | MS.gene84099:CDS |
| AATTGAGAGGCTGCAGAACT+AGG | 0.476304 | 1.4:-38005584 | None:intergenic |
| TGCTCAAACTCTTGTTCTGA+TGG | 0.476367 | 1.4:-38004123 | None:intergenic |
| TAACTTGAGAAAACATGAAT+CGG | 0.480484 | 1.4:+38007354 | MS.gene84099:CDS |
| TAAGACATCGCTATCGCGGT+TGG | 0.481232 | 1.4:+38006559 | MS.gene84099:CDS |
| TACAAGGCGGTGCAAAAGCC+AGG | 0.481676 | 1.4:+38005743 | MS.gene84099:CDS |
| TTAAAAGAACATGGAGAGAA+TGG | 0.487266 | 1.4:+38005647 | MS.gene84099:CDS |
| ACATAATGTGCCGGTTTACA+AGG | 0.487938 | 1.4:+38005727 | MS.gene84099:CDS |
| ATACCAAATTTAGACGCCTC+GGG | 0.488483 | 1.4:-38004174 | None:intergenic |
| TTGAAGATCACTATTTGTAC+AGG | 0.488775 | 1.4:+38005429 | MS.gene84099:CDS |
| ATTGGTGATTGGTTTCCACT+TGG | 0.491227 | 1.4:+38006350 | MS.gene84099:CDS |
| TTTCCAAATTCATATCATGC+TGG | 0.496493 | 1.4:+38005782 | MS.gene84099:CDS |
| TGCCACAAAATTGTTTATGC+GGG | 0.497644 | 1.4:+38006819 | MS.gene84099:CDS |
| GACATGCAGCCTCTGCAATA+GGG | 0.498995 | 1.4:+38006631 | MS.gene84099:CDS |
| ATCATCAGGATCACTTGAAA+AGG | 0.501772 | 1.4:-38005016 | None:intergenic |
| GGTGCAAATAAAACTTGGTA+TGG | 0.503293 | 1.4:+38005557 | MS.gene84099:CDS |
| ACGAGGTCTTACCATGGAAA+AGG | 0.511206 | 1.4:-38006706 | None:intergenic |
| GAAATAGTACATGGAGAGAA+AGG | 0.511259 | 1.4:+38004958 | MS.gene84099:CDS |
| CAAAATCAAACTTGAAGATA+CGG | 0.514277 | 1.4:+38006487 | MS.gene84099:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.515442 | 1.4:+38005377 | MS.gene84099:CDS |
| AGTGATCCTGATGATAAGCT+TGG | 0.516084 | 1.4:+38005024 | MS.gene84099:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1.4:+38005402 | MS.gene84099:CDS |
| TCCGTTAAGACAAAAGAAGC+AGG | 0.523048 | 1.4:-38004639 | None:intergenic |
| GAGAACATACTGTATTTAAG+AGG | 0.523058 | 1.4:+38006843 | MS.gene84099:CDS |
| TTAAGTTTAACACAATTGTA+CGG | 0.523492 | 1.4:+38004676 | MS.gene84099:CDS |
| TTGGTACTCATCATCACTGA+TGG | 0.536804 | 1.4:-38007313 | None:intergenic |
| ACTCAGGTGCAAATAAAACT+TGG | 0.537060 | 1.4:+38005552 | MS.gene84099:CDS |
| TTATGTTCTAACAAGACATC+AGG | 0.538881 | 1.4:-38005710 | None:intergenic |
| AGAAGAACTGTTAACTCGCT+AGG | 0.545814 | 1.4:+38007193 | MS.gene84099:CDS |
| CTTGTTAGAACATAATGTGC+CGG | 0.547471 | 1.4:+38005718 | MS.gene84099:CDS |
| AATGGAGACTGTGGCAGCCG+CGG | 0.554838 | 1.4:-38005238 | None:intergenic |
| GCAGGATTAGAGGCAGCGAT+TGG | 0.560174 | 1.4:-38004621 | None:intergenic |
| TTTATAAGACATCGCTATCG+CGG | 0.560344 | 1.4:+38006555 | MS.gene84099:CDS |
| AAGGTGACGACAAACTCTCC+TGG | 0.561754 | 1.4:-38005761 | None:intergenic |
| CAAGACATCAGGAGAGAACA+TGG | 0.563327 | 1.4:-38005699 | None:intergenic |
| CATACCAAATTTAGACGCCT+CGG | 0.566207 | 1.4:-38004175 | None:intergenic |
| TGTTCTGATGGATAATACGT+TGG | 0.567602 | 1.4:-38004111 | None:intergenic |
| GCCAAAAGGGAAGATATTGA+AGG | 0.571210 | 1.4:-38007394 | None:intergenic |
| TTCCTGTCAACTAAACGCAA+TGG | 0.577093 | 1.4:-38005256 | None:intergenic |
| GTGCCACAAAATTGTTTATG+CGG | 0.580719 | 1.4:+38006818 | MS.gene84099:CDS |
| ATTTAAGAGGAATGACATGT+TGG | 0.584034 | 1.4:+38006856 | MS.gene84099:CDS |
| TTCTGGCACGAAATAGTACA+TGG | 0.584729 | 1.4:+38004949 | MS.gene84099:CDS |
| TTGCTAGCTGCAGCCCCAAG+TGG | 0.592133 | 1.4:-38006365 | None:intergenic |
| ATTTGTTGAAGGTAACGCGT+TGG | 0.602455 | 1.4:-38006924 | None:intergenic |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1.4:-38005383 | None:intergenic |
| TACAACTCCTCAAAAGCTAG+AGG | 0.624733 | 1.4:+38006461 | MS.gene84099:CDS |
| AGCATAAATTACCATCACTC+AGG | 0.628951 | 1.4:+38005536 | MS.gene84099:intron |
| ACAGAATAATAATTGGCATG+AGG | 0.629929 | 1.4:+38007159 | MS.gene84099:intron |
| TACCAAATTTAGACGCCTCG+GGG | 0.634434 | 1.4:-38004173 | None:intergenic |
| AGCATGATATGAATTTGGAA+AGG | 0.636839 | 1.4:-38005780 | None:intergenic |
| AACAAAGTCTTAAAAGAACA+TGG | 0.646276 | 1.4:+38005638 | MS.gene84099:CDS |
| CATAACAATCCCTATTGCAG+AGG | 0.648673 | 1.4:-38006640 | None:intergenic |
| TGAATGCATCAAAGAACACA+AGG | 0.660866 | 1.4:+38006967 | MS.gene84099:CDS |
| ACCAAATTTAGACGCCTCGG+GGG | 0.671194 | 1.4:-38004172 | None:intergenic |
| ACTAAACGCAATGGAGACTG+TGG | 0.698121 | 1.4:-38005247 | None:intergenic |
| TAATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1.4:+38005730 | MS.gene84099:CDS |
| TGAGTATGGAGTCAATGTTG+AGG | 0.703101 | 1.4:+38004987 | MS.gene84099:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTATTCAAAATTTCA+GGG | + | chr1.4:38005350-38005369 | MS.gene84099:intron | 10.0% |
| !!! | TTAATTTTATTCAAAATTTC+AGG | + | chr1.4:38005349-38005368 | MS.gene84099:intron | 10.0% |
| !! | ATATTTGATCTTAATATTTC+AGG | + | chr1.4:38004579-38004598 | MS.gene84099:intron | 15.0% |
| !! | AAAGTGAAACTTGAAAATAT+AGG | + | chr1.4:38004426-38004445 | MS.gene84099:intron | 20.0% |
| !! | ACTGAAAACAGAATAATAAT+TGG | + | chr1.4:38007152-38007171 | MS.gene84099:intron | 20.0% |
| !! | AGAACGATATAATCTAATAT+AGG | + | chr1.4:38004485-38004504 | MS.gene84099:intron | 20.0% |
| !! | ATGTTAAGAAAAAACTAACA+AGG | - | chr1.4:38005103-38005122 | None:intergenic | 20.0% |
| !! | TGATGAAAAATTAACTAACT+TGG | + | chr1.4:38004804-38004823 | MS.gene84099:intron | 20.0% |
| !! | TTAAGTTTAACACAATTGTA+CGG | + | chr1.4:38004676-38004695 | MS.gene84099:CDS | 20.0% |
| !!! | AACAACTTTTAATTCAGATT+AGG | - | chr1.4:38005310-38005329 | None:intergenic | 20.0% |
| !!! | AATCTGTTTAATTTTGTACA+AGG | + | chr1.4:38006088-38006107 | MS.gene84099:intron | 20.0% |
| !!! | ACATAAGTATTTAAAATAGC+AGG | - | chr1.4:38006207-38006226 | None:intergenic | 20.0% |
| !!! | ACTATTTTAATGAAGTTTAG+AGG | - | chr1.4:38007036-38007055 | None:intergenic | 20.0% |
| !!! | ATCTCATTGATTTTAACTTT+TGG | + | chr1.4:38007122-38007141 | MS.gene84099:intron | 20.0% |
| !!! | TTTTTTTCCATAATAATACC+TGG | + | chr1.4:38006168-38006187 | MS.gene84099:intron | 20.0% |
| ! | AACAAAGTCTTAAAAGAACA+TGG | + | chr1.4:38005638-38005657 | MS.gene84099:CDS | 25.0% |
| ! | AACAAGCAATTTCAATTTGA+AGG | + | chr1.4:38005047-38005066 | MS.gene84099:CDS | 25.0% |
| ! | AGTAGAATTCTTACTATACT+TGG | - | chr1.4:38004299-38004318 | None:intergenic | 25.0% |
| ! | CAAAATCAAACTTGAAGATA+CGG | + | chr1.4:38006487-38006506 | MS.gene84099:CDS | 25.0% |
| ! | GATGCATTCATATATGTTAT+AGG | - | chr1.4:38006957-38006976 | None:intergenic | 25.0% |
| ! | GATTACTTGTGTAAAAACTA+CGG | - | chr1.4:38005966-38005985 | None:intergenic | 25.0% |
| ! | TAACTTGAGAAAACATGAAT+CGG | + | chr1.4:38007354-38007373 | MS.gene84099:CDS | 25.0% |
| !! | AGGTTGATTGAATAATAGAA+AGG | + | chr1.4:38005906-38005925 | MS.gene84099:intron | 25.0% |
| !! | ATCATTTTCTTGTTGAGTTT+AGG | + | chr1.4:38006296-38006315 | MS.gene84099:intron | 25.0% |
| !! | ATTTTCTGCAGATAAACTAA+AGG | - | chr1.4:38004150-38004169 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAGTTATAT+AGG | - | chr1.4:38007351-38007370 | None:intergenic | 25.0% |
| !! | TAGGAGAATATATTTGTTGA+AGG | - | chr1.4:38006938-38006957 | None:intergenic | 25.0% |
| !! | TGAATAATAGAAAGGTATGT+AGG | + | chr1.4:38005914-38005933 | MS.gene84099:intron | 25.0% |
| !! | TTGGATAAACTTGCTTATTA+TGG | + | chr1.4:38006780-38006799 | MS.gene84099:intron | 25.0% |
| !!! | TAACTTTTTCTAAGAGAAGA+AGG | + | chr1.4:38004736-38004755 | MS.gene84099:CDS | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1.4:38005679-38005698 | None:intergenic | 25.0% |
| !!! | TTTTCATTACCATGTTTCTA+GGG | + | chr1.4:38004222-38004241 | MS.gene84099:intron | 25.0% |
| AAAGAAAGTTGAGGGATAAA+AGG | - | chr1.4:38004333-38004352 | None:intergenic | 30.0% | |
| AATACTCAAAGAGAATAACG+AGG | - | chr1.4:38006726-38006745 | None:intergenic | 30.0% | |
| AATCCAGCATGATATGAATT+TGG | - | chr1.4:38005788-38005807 | None:intergenic | 30.0% | |
| ACAGAATAATAATTGGCATG+AGG | + | chr1.4:38007159-38007178 | MS.gene84099:intron | 30.0% | |
| AGCATGATATGAATTTGGAA+AGG | - | chr1.4:38005783-38005802 | None:intergenic | 30.0% | |
| AGCTCTTCAAATACATCATT+AGG | + | chr1.4:38006602-38006621 | MS.gene84099:CDS | 30.0% | |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1.4:38006416-38006435 | None:intergenic | 30.0% | |
| ATATTGCTTTACGGATAAGT+AGG | + | chr1.4:38005882-38005901 | MS.gene84099:intron | 30.0% | |
| ATTTAAGAGGAATGACATGT+TGG | + | chr1.4:38006856-38006875 | MS.gene84099:CDS | 30.0% | |
| CTTTCTATTATTCAAGCTCA+GGG | - | chr1.4:38005995-38006014 | None:intergenic | 30.0% | |
| GAGAACATACTGTATTTAAG+AGG | + | chr1.4:38006843-38006862 | MS.gene84099:CDS | 30.0% | |
| GTAGTAACTATTAGAACTTC+AGG | - | chr1.4:38006114-38006133 | None:intergenic | 30.0% | |
| TAACACATTGCTTTATCTTC+AGG | + | chr1.4:38007083-38007102 | MS.gene84099:intron | 30.0% | |
| TACAAAAATTGCTTCCTTAC+TGG | - | chr1.4:38005286-38005305 | None:intergenic | 30.0% | |
| TATCATGCTGGATTTAATCA+TGG | + | chr1.4:38005794-38005813 | MS.gene84099:CDS | 30.0% | |
| TCAAAAAAACCCTAGAAACA+TGG | - | chr1.4:38004234-38004253 | None:intergenic | 30.0% | |
| TTAAAAGAACATGGAGAGAA+TGG | + | chr1.4:38005647-38005666 | MS.gene84099:CDS | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1.4:38006425-38006444 | None:intergenic | 30.0% | |
| TTATGTTCTAACAAGACATC+AGG | - | chr1.4:38005713-38005732 | None:intergenic | 30.0% | |
| TTGAAGATCACTATTTGTAC+AGG | + | chr1.4:38005429-38005448 | MS.gene84099:CDS | 30.0% | |
| TTTCCAAATTCATATCATGC+TGG | + | chr1.4:38005782-38005801 | MS.gene84099:CDS | 30.0% | |
| ! | AGAAAGGTATGTAGGTTTAA+AGG | + | chr1.4:38005922-38005941 | MS.gene84099:intron | 30.0% |
| ! | CTTTTCATTACCATGTTTCT+AGG | + | chr1.4:38004221-38004240 | MS.gene84099:intron | 30.0% |
| ! | GGTTTTCAAATCAAATGAGA+TGG | + | chr1.4:38004707-38004726 | MS.gene84099:CDS | 30.0% |
| ! | TAAGTTGCTTGTGTTATTGT+TGG | + | chr1.4:38006761-38006780 | MS.gene84099:intron | 30.0% |
| ! | TTCTGATGGATATTGCTTTA+CGG | + | chr1.4:38005873-38005892 | MS.gene84099:intron | 30.0% |
| ! | TTTATCCCTCAACTTTCTTT+TGG | + | chr1.4:38004333-38004352 | MS.gene84099:intron | 30.0% |
| ! | TTTTCCATAATAATACCTGG+CGG | + | chr1.4:38006171-38006190 | MS.gene84099:intron | 30.0% |
| ! | TTTTTCCTGTTGAAGACTTT+TGG | - | chr1.4:38006897-38006916 | None:intergenic | 30.0% |
| !! | ATTTGAAGCTTTTGCAAACA+AGG | + | chr1.4:38004867-38004886 | MS.gene84099:CDS | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1.4:38006339-38006358 | MS.gene84099:CDS | 30.0% |
| !! | TTTGATTTGAAAACCCTAAG+AGG | - | chr1.4:38004702-38004721 | None:intergenic | 30.0% |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1.4:38006308-38006327 | MS.gene84099:intron | 30.0% |
| !!! | TTTGATTTTAGAATTTGCCG+CGG | + | chr1.4:38005221-38005240 | MS.gene84099:intron | 30.0% |
| AATTCCGCCAGGTATTATTA+TGG | - | chr1.4:38006178-38006197 | None:intergenic | 35.0% | |
| ACTCAGGTGCAAATAAAACT+TGG | + | chr1.4:38005552-38005571 | MS.gene84099:CDS | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1.4:38005377-38005396 | MS.gene84099:CDS | 35.0% | |
| AGCATAAATTACCATCACTC+AGG | + | chr1.4:38005536-38005555 | MS.gene84099:intron | 35.0% | |
| AGGTTTCACTAAAATCACAG+TGG | + | chr1.4:38004446-38004465 | MS.gene84099:intron | 35.0% | |
| ATCATCAGGATCACTTGAAA+AGG | - | chr1.4:38005019-38005038 | None:intergenic | 35.0% | |
| ATGGATCCAAAAGAAAGTTG+AGG | - | chr1.4:38004342-38004361 | None:intergenic | 35.0% | |
| CCTGAGCTTGAATAATAGAA+AGG | + | chr1.4:38005993-38006012 | MS.gene84099:intron | 35.0% | |
| CCTTTCTATTATTCAAGCTC+AGG | - | chr1.4:38005996-38006015 | None:intergenic | 35.0% | |
| CGAGATTTGATTATGGAGTT+CGG | - | chr1.4:38006056-38006075 | None:intergenic | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1.4:38005378-38005397 | MS.gene84099:CDS | 35.0% | |
| CTTGTTAGAACATAATGTGC+CGG | + | chr1.4:38005718-38005737 | MS.gene84099:CDS | 35.0% | |
| GAAATAGTACATGGAGAGAA+AGG | + | chr1.4:38004958-38004977 | MS.gene84099:CDS | 35.0% | |
| GCTACCTATAATTCCATATG+AGG | + | chr1.4:38006409-38006428 | MS.gene84099:CDS | 35.0% | |
| GGAAGATATTGAAGGAACTT+TGG | - | chr1.4:38007389-38007408 | None:intergenic | 35.0% | |
| GGTGCAAATAAAACTTGGTA+TGG | + | chr1.4:38005557-38005576 | MS.gene84099:CDS | 35.0% | |
| GTGCCACAAAATTGTTTATG+CGG | + | chr1.4:38006818-38006837 | MS.gene84099:CDS | 35.0% | |
| TGAATGCATCAAAGAACACA+AGG | + | chr1.4:38006967-38006986 | MS.gene84099:CDS | 35.0% | |
| TGCCACAAAATTGTTTATGC+GGG | + | chr1.4:38006819-38006838 | MS.gene84099:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1.4:38005402-38005421 | MS.gene84099:CDS | 35.0% | |
| TGGATCCAAAAGAAAGTTGA+GGG | - | chr1.4:38004341-38004360 | None:intergenic | 35.0% | |
| TGTCTTAACGGAAGAGAAAA+AGG | + | chr1.4:38004650-38004669 | MS.gene84099:CDS | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1.4:38006701-38006720 | None:intergenic | 35.0% | |
| TTGACAGGAAAATTCCAGTA+AGG | + | chr1.4:38005269-38005288 | MS.gene84099:intron | 35.0% | |
| TTTATAAGACATCGCTATCG+CGG | + | chr1.4:38006555-38006574 | MS.gene84099:CDS | 35.0% | |
| ! | ATATAGGACTCGTTGTCTTT+TGG | - | chr1.4:38007335-38007354 | None:intergenic | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1.4:38006332-38006351 | MS.gene84099:CDS | 35.0% |
| ! | GACAGTCTTTTCAAATTGAG+AGG | - | chr1.4:38005600-38005619 | None:intergenic | 35.0% |
| ! | TCCTGCTTCTTTTGTCTTAA+CGG | + | chr1.4:38004638-38004657 | MS.gene84099:CDS | 35.0% |
| ! | TCCTTCAATATCTTCCCTTT+TGG | + | chr1.4:38007393-38007412 | MS.gene84099:CDS | 35.0% |
| ! | TGTTCTGATGGATAATACGT+TGG | - | chr1.4:38004114-38004133 | None:intergenic | 35.0% |
| !! | ATTTTTCAGATGTCGCCAAA+AGG | - | chr1.4:38007411-38007430 | None:intergenic | 35.0% |
| !! | TAGATATCGAAAAAGCGTTC+TGG | + | chr1.4:38004932-38004951 | MS.gene84099:CDS | 35.0% |
| !! | TGGTGTTATTACGTTTCTGA+TGG | + | chr1.4:38005859-38005878 | MS.gene84099:intron | 35.0% |
| !! | TTTTATTTGCACCTGAGTGA+TGG | - | chr1.4:38005550-38005569 | None:intergenic | 35.0% |
| !! | TTTTTCAGATGTCGCCAAAA+GGG | - | chr1.4:38007410-38007429 | None:intergenic | 35.0% |
| AAACTCGAGTACTTCAGAGA+TGG | - | chr1.4:38004361-38004380 | None:intergenic | 40.0% | |
| AGAAGAACTGTTAACTCGCT+AGG | + | chr1.4:38007193-38007212 | MS.gene84099:CDS | 40.0% | |
| AGAATAACGAGGTCTTACCA+TGG | - | chr1.4:38006715-38006734 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1.4:38005386-38005405 | None:intergenic | 40.0% | |
| AGTGATCCTGATGATAAGCT+TGG | + | chr1.4:38005024-38005043 | MS.gene84099:CDS | 40.0% | |
| ATACCAAATTTAGACGCCTC+GGG | - | chr1.4:38004177-38004196 | None:intergenic | 40.0% | |
| CATAACAATCCCTATTGCAG+AGG | - | chr1.4:38006643-38006662 | None:intergenic | 40.0% | |
| CATACCAAATTTAGACGCCT+CGG | - | chr1.4:38004178-38004197 | None:intergenic | 40.0% | |
| CTTGTTCCAAGCTTATCATC+AGG | - | chr1.4:38005033-38005052 | None:intergenic | 40.0% | |
| GAACACGCGAGATTTGATTA+TGG | - | chr1.4:38006063-38006082 | None:intergenic | 40.0% | |
| GACAAAAGAAGCAGGATTAG+AGG | - | chr1.4:38004634-38004653 | None:intergenic | 40.0% | |
| GAGAAAGGAACAGTTGAGTA+TGG | + | chr1.4:38004973-38004992 | MS.gene84099:CDS | 40.0% | |
| GCAACAGATTCTGCAATTGT+AGG | + | chr1.4:38004520-38004539 | MS.gene84099:intron | 40.0% | |
| GCCAAAAGGGAAGATATTGA+AGG | - | chr1.4:38007397-38007416 | None:intergenic | 40.0% | |
| TACAACTCCTCAAAAGCTAG+AGG | + | chr1.4:38006461-38006480 | MS.gene84099:CDS | 40.0% | |
| TCCGTTAAGACAAAAGAAGC+AGG | - | chr1.4:38004642-38004661 | None:intergenic | 40.0% | |
| TGAGTATGGAGTCAATGTTG+AGG | + | chr1.4:38004987-38005006 | MS.gene84099:CDS | 40.0% | |
| TGCTCAAACTCTTGTTCTGA+TGG | - | chr1.4:38004126-38004145 | None:intergenic | 40.0% | |
| TTCCTGTCAACTAAACGCAA+TGG | - | chr1.4:38005259-38005278 | None:intergenic | 40.0% | |
| TTCTGGCACGAAATAGTACA+TGG | + | chr1.4:38004949-38004968 | MS.gene84099:CDS | 40.0% | |
| TTGGTACTCATCATCACTGA+TGG | - | chr1.4:38007316-38007335 | None:intergenic | 40.0% | |
| ! | ATTTGTTGAAGGTAACGCGT+TGG | - | chr1.4:38006927-38006946 | None:intergenic | 40.0% |
| ! | CTCCCGCATAAACAATTTTG+TGG | - | chr1.4:38006824-38006843 | None:intergenic | 40.0% |
| ! | GATCCAATTTGCCTTTTCCA+TGG | + | chr1.4:38006695-38006714 | MS.gene84099:CDS | 40.0% |
| ! | GCGTTTTGCAATAGATTTCG+TGG | + | chr1.4:38004889-38004908 | MS.gene84099:CDS | 40.0% |
| !! | ACATAATGTGCCGGTTTACA+AGG | + | chr1.4:38005727-38005746 | MS.gene84099:CDS | 40.0% |
| !! | ATTGGTGATTGGTTTCCACT+TGG | + | chr1.4:38006350-38006369 | MS.gene84099:CDS | 40.0% |
| !! | TTGGTGATTGGTTTCCACTT+GGG | + | chr1.4:38006351-38006370 | MS.gene84099:CDS | 40.0% |
| !!! | TTTGTCACCTCTAGCTTTTG+AGG | - | chr1.4:38006471-38006490 | None:intergenic | 40.0% |
| AATTGAGAGGCTGCAGAACT+AGG | - | chr1.4:38005587-38005606 | None:intergenic | 45.0% | |
| ACACAATTGTACGGCCTCTT+AGG | + | chr1.4:38004685-38004704 | MS.gene84099:CDS | 45.0% | |
| ACGAGGTCTTACCATGGAAA+AGG | - | chr1.4:38006709-38006728 | None:intergenic | 45.0% | |
| ACTAAACGCAATGGAGACTG+TGG | - | chr1.4:38005250-38005269 | None:intergenic | 45.0% | |
| CAAGACATCAGGAGAGAACA+TGG | - | chr1.4:38005702-38005721 | None:intergenic | 45.0% | |
| CACAATTGTACGGCCTCTTA+GGG | + | chr1.4:38004686-38004705 | MS.gene84099:CDS | 45.0% | |
| CTCCATTGCGTTTAGTTGAC+AGG | + | chr1.4:38005254-38005273 | MS.gene84099:CDS | 45.0% | |
| CTCTCTCTCTCTACATGTGT+TGG | + | chr1.4:38005839-38005858 | MS.gene84099:intron | 45.0% | |
| TACCAAATTTAGACGCCTCG+GGG | - | chr1.4:38004176-38004195 | None:intergenic | 45.0% | |
| TGCTGCCAAAAGTCTTCAAC+AGG | + | chr1.4:38006889-38006908 | MS.gene84099:CDS | 45.0% | |
| TGCTTTACGGATAAGTAGGC+AGG | + | chr1.4:38005886-38005905 | MS.gene84099:intron | 45.0% | |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1.4:38005740-38005759 | None:intergenic | 45.0% |
| !! | TAATGTGCCGGTTTACAAGG+CGG | + | chr1.4:38005730-38005749 | MS.gene84099:CDS | 45.0% |
| !! | TGGTGATTGGTTTCCACTTG+GGG | + | chr1.4:38006352-38006371 | MS.gene84099:CDS | 45.0% |
| AAGGTGACGACAAACTCTCC+TGG | - | chr1.4:38005764-38005783 | None:intergenic | 50.0% | |
| ACCAAATTTAGACGCCTCGG+GGG | - | chr1.4:38004175-38004194 | None:intergenic | 50.0% | |
| GACATGCAGCCTCTGCAATA+GGG | + | chr1.4:38006631-38006650 | MS.gene84099:CDS | 50.0% | |
| TAAGACATCGCTATCGCGGT+TGG | + | chr1.4:38006559-38006578 | MS.gene84099:CDS | 50.0% | |
| TGACATGCAGCCTCTGCAAT+AGG | + | chr1.4:38006630-38006649 | MS.gene84099:CDS | 50.0% | |
| AGGTACTTCCGCCACTATGC+AGG | + | chr1.4:38006013-38006032 | MS.gene84099:intron | 55.0% | |
| GCAGGAAGTGAAATTCCGCC+AGG | - | chr1.4:38006189-38006208 | None:intergenic | 55.0% | |
| GCAGGATTAGAGGCAGCGAT+TGG | - | chr1.4:38004624-38004643 | None:intergenic | 55.0% | |
| GGTACTTCCGCCACTATGCA+GGG | + | chr1.4:38006014-38006033 | MS.gene84099:intron | 55.0% | |
| GTACTTCCGCCACTATGCAG+GGG | + | chr1.4:38006015-38006034 | MS.gene84099:intron | 55.0% | |
| GTTCCTATGCCCCTGCATAG+TGG | - | chr1.4:38006027-38006046 | None:intergenic | 55.0% | |
| TACAAGGCGGTGCAAAAGCC+AGG | + | chr1.4:38005743-38005762 | MS.gene84099:CDS | 55.0% | |
| TCTGCAGAAAATTGCCCCCG+AGG | + | chr1.4:38004158-38004177 | MS.gene84099:CDS | 55.0% | |
| AATGGAGACTGTGGCAGCCG+CGG | - | chr1.4:38005241-38005260 | None:intergenic | 60.0% | |
| CCTATGCCCCTGCATAGTGG+CGG | - | chr1.4:38006024-38006043 | None:intergenic | 60.0% | |
| TTGCTAGCTGCAGCCCCAAG+TGG | - | chr1.4:38006368-38006387 | None:intergenic | 60.0% | |
| ! | GCCCCCGAGGCGTCTAAATT+TGG | + | chr1.4:38004171-38004190 | MS.gene84099:CDS | 60.0% |
| ! | CCGCCACTATGCAGGGGCAT+AGG | + | chr1.4:38006021-38006040 | MS.gene84099:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 38004087 | 38007438 | 38004087 | ID=MS.gene84099 |
| chr1.4 | mRNA | 38004087 | 38007438 | 38004087 | ID=MS.gene84099.t1;Parent=MS.gene84099 |
| chr1.4 | exon | 38004087 | 38004192 | 38004087 | ID=MS.gene84099.t1.exon1;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38004087 | 38004192 | 38004087 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38004601 | 38004757 | 38004601 | ID=MS.gene84099.t1.exon2;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38004601 | 38004757 | 38004601 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38004849 | 38005068 | 38004849 | ID=MS.gene84099.t1.exon3;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38004849 | 38005068 | 38004849 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38005232 | 38005285 | 38005232 | ID=MS.gene84099.t1.exon4;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38005232 | 38005285 | 38005232 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38005371 | 38005450 | 38005371 | ID=MS.gene84099.t1.exon5;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38005371 | 38005450 | 38005371 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38005538 | 38005815 | 38005538 | ID=MS.gene84099.t1.exon6;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38005538 | 38005815 | 38005538 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38006318 | 38006716 | 38006318 | ID=MS.gene84099.t1.exon7;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38006318 | 38006716 | 38006318 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38006813 | 38006988 | 38006813 | ID=MS.gene84099.t1.exon8;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38006813 | 38006988 | 38006813 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| chr1.4 | exon | 38007163 | 38007438 | 38007163 | ID=MS.gene84099.t1.exon9;Parent=MS.gene84099.t1 |
| chr1.4 | CDS | 38007163 | 38007438 | 38007163 | ID=cds.MS.gene84099.t1;Parent=MS.gene84099.t1 |
| Gene Sequence |
| Protein sequence |
