AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84114

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84114.t1 MTR_0020s0020 94.135 341 20 0 1 341 1 341 0.0 581
MS.gene84114.t1 MTR_1g100777 55.072 345 107 10 1 340 1 302 2.79e-107 316
MS.gene84114.t1 MTR_5g010680 45.820 323 108 6 7 286 5 303 8.09e-80 248
MS.gene84114.t1 MTR_3g101870 45.205 219 102 3 23 227 14 228 1.54e-58 193
MS.gene84114.t1 MTR_5g089170 38.909 275 117 6 23 286 15 249 1.52e-53 177
MS.gene84114.t1 MTR_5g017470 44.091 220 81 4 26 230 2 194 5.34e-51 171
MS.gene84114.t1 MTR_7g091370 43.000 200 78 2 27 226 16 179 7.63e-45 153
MS.gene84114.t1 MTR_5g029680 61.111 108 42 0 17 124 16 123 1.49e-41 151
MS.gene84114.t1 MTR_7g095680 51.220 123 59 1 3 124 18 140 3.85e-40 145
MS.gene84114.t1 MTR_6g043060 60.000 105 41 1 32 135 21 125 2.25e-39 142
MS.gene84114.t1 MTR_1g071360 61.702 94 36 0 31 124 30 123 1.22e-38 140
MS.gene84114.t1 MTR_1g071360 61.702 94 36 0 31 124 27 120 2.16e-38 140
MS.gene84114.t1 MTR_4g077970 65.217 92 32 0 33 124 12 103 2.67e-38 142
MS.gene84114.t1 MTR_1g061170 52.941 119 50 1 33 145 49 167 4.26e-37 139
MS.gene84114.t1 MTR_1g102860 61.702 94 36 0 31 124 38 131 8.01e-37 135
MS.gene84114.t1 MTR_8g083100 60.194 103 40 1 34 135 23 125 1.47e-36 137
MS.gene84114.t1 MTR_8g087540 59.596 99 39 1 26 124 6 103 1.64e-36 136
MS.gene84114.t1 MTR_2g100680 58.491 106 43 1 31 135 29 134 9.80e-36 135
MS.gene84114.t1 MTR_4g088900 35.122 205 95 4 31 231 31 201 1.49e-35 129
MS.gene84114.t1 MTR_3g104550 58.511 94 39 0 31 124 44 137 9.35e-35 130
MS.gene84114.t1 MTR_6g086805 57.143 98 42 0 27 124 5 102 5.38e-34 128
MS.gene84114.t1 MTR_2g017890 47.899 119 62 0 33 151 15 133 1.34e-32 125
MS.gene84114.t1 MTR_2g100670 52.830 106 49 1 31 135 31 136 1.46e-32 123
MS.gene84114.t1 MTR_2g100670 55.319 94 42 0 31 124 139 232 1.26e-31 123
MS.gene84114.t1 MTR_8g105780 59.574 94 37 1 32 124 21 114 3.16e-31 121
MS.gene84114.t1 MTR_4g045757 56.897 58 25 0 33 90 14 71 2.12e-17 76.3
MS.gene84114.t1 MTR_5g047190 41.758 91 46 2 41 124 1 91 1.03e-15 72.4
MS.gene84114.t1 MTR_4g011850 28.889 135 50 1 93 227 9 97 2.91e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84114.t1 AT5G62020 47.321 336 103 9 26 340 16 298 4.95e-87 264
MS.gene84114.t1 AT4G11660 45.954 346 123 8 25 329 51 373 4.24e-79 246
MS.gene84114.t1 AT1G46264 47.783 203 102 2 28 227 29 230 2.34e-56 187
MS.gene84114.t1 AT4G36990 43.318 217 83 4 21 226 2 189 1.80e-51 172
MS.gene84114.t1 AT2G41690 43.939 198 93 3 31 228 38 217 1.11e-44 153
MS.gene84114.t1 AT4G17750 63.725 102 37 0 23 124 42 143 2.01e-40 148
MS.gene84114.t1 AT3G22830 60.000 110 44 0 15 124 43 152 4.64e-40 145
MS.gene84114.t1 AT1G32330 67.021 94 31 0 31 124 35 128 9.45e-40 146
MS.gene84114.t1 AT1G32330 67.021 94 31 0 31 124 35 128 9.58e-40 146
MS.gene84114.t1 AT3G02990 66.667 96 31 1 29 124 20 114 9.22e-39 143
MS.gene84114.t1 AT5G43840 59.223 103 42 0 31 133 17 119 1.22e-38 139
MS.gene84114.t1 AT3G51910 55.340 103 46 0 31 133 27 129 4.35e-38 137
MS.gene84114.t1 AT5G16820 65.625 96 32 1 29 124 24 118 6.32e-37 139
MS.gene84114.t1 AT5G16820 65.625 96 32 1 29 124 24 118 6.32e-37 139
MS.gene84114.t1 AT2G26150 59.574 94 38 0 31 124 42 135 2.86e-36 134
MS.gene84114.t1 AT2G26150 59.574 94 38 0 31 124 42 135 2.86e-36 134
MS.gene84114.t1 AT3G63350 56.701 97 42 0 27 123 22 118 5.45e-36 132
MS.gene84114.t1 AT5G03720 40.984 183 61 2 33 215 55 190 5.79e-36 135
MS.gene84114.t1 AT5G03720 40.984 183 61 2 33 215 55 190 5.79e-36 135
MS.gene84114.t1 AT5G54070 55.660 106 43 1 30 131 68 173 4.33e-35 130
MS.gene84114.t1 AT4G13980 57.843 102 42 1 34 134 24 125 1.01e-34 132
MS.gene84114.t1 AT3G24520 61.053 95 37 0 30 124 14 108 1.18e-34 129
MS.gene84114.t1 AT1G67970 56.989 93 39 1 33 124 19 111 1.33e-31 122
MS.gene84114.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.69e-29 115
MS.gene84114.t1 AT5G45710 56.757 111 44 2 29 139 10 116 2.69e-29 115
MS.gene84114.t1 AT4G18880 59.596 99 39 1 26 124 9 106 4.22e-28 113
MS.gene84114.t1 AT4G18870 46.067 89 43 3 34 120 14 99 7.30e-19 85.9
MS.gene84114.t1 AT4G18870 42.391 92 50 1 29 117 139 230 1.41e-18 85.1
MS.gene84114.t1 AT1G77570 39.773 88 48 3 34 117 27 113 5.95e-11 60.5

Find 76 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATCAAGCGGCGGATT+TGG 0.255860 6.3:-52910123 None:intergenic
AGAGAAAACGGTTGTGAAAA+TGG 0.297213 6.3:+52910225 MS.gene84114:CDS
TTATTGTGTTTGAAATACTT+TGG 0.401377 6.3:-52909455 None:intergenic
GAAATGAATCCGAAGCTATT+CGG 0.407926 6.3:+52910177 MS.gene84114:CDS
GTTATTTCGTGGAACGAAGA+TGG 0.410793 6.3:+52909383 MS.gene84114:CDS
GGGTGTTGCAACGGTGGTTG+TGG 0.423416 6.3:-52909279 None:intergenic
CATGGCTCCTTCGCCAGCTC+CGG 0.430979 6.3:+52909235 None:intergenic
GTCAAACTCCGGTGAAGAAC+AGG 0.439484 6.3:+52909882 MS.gene84114:CDS
AAGCTATTCGGTGTGGCGAT+TGG 0.446939 6.3:+52910189 MS.gene84114:CDS
TTCTTCACCGGCACGTGCAC+CGG 0.455123 6.3:+52909918 MS.gene84114:CDS
GGCTCCTTCGCCAGCTCCGG+TGG 0.461075 6.3:+52909238 MS.gene84114:CDS
GCTTGATTTGATGCCGGCGG+TGG 0.464333 6.3:+52910134 MS.gene84114:CDS
TTTGAAAATTCCCACCGGTC+AGG 0.467906 6.3:-52909664 None:intergenic
TGGATTCACCGCCGTCATAC+CGG 0.469995 6.3:-52910103 None:intergenic
TCCTTCACCGGTACTGTTGA+CGG 0.472445 6.3:+52909828 MS.gene84114:CDS
TGTTCTTCACCGGAGTTTGA+CGG 0.477010 6.3:-52909880 None:intergenic
AGCTCGGCCGGTGCACGTGC+CGG 0.493943 6.3:-52909925 None:intergenic
AAGCAAATTACTAGCAAAGA+TGG 0.500668 6.3:-52909432 None:intergenic
GCAAAACGAGTTAGAGAAAA+CGG 0.508281 6.3:+52910213 MS.gene84114:CDS
ATTGAGTTGACGAACAAAGC+TGG 0.509850 6.3:-52909483 None:intergenic
GCTACATCAACCTGGTTCTA+CGG 0.510688 6.3:+52910275 MS.gene84114:CDS
ATCGCCACACCGAATAGCTT+CGG 0.514928 6.3:-52910186 None:intergenic
GCTCAAGGAAGTAGAGAATC+CGG 0.523566 6.3:+52910084 MS.gene84114:CDS
GGACGTGAAATCTGAACCGT+TGG 0.523870 6.3:+52910296 MS.gene84114:CDS
GATTTCACGTCCGTAGAACC+AGG 0.525961 6.3:-52910285 None:intergenic
AAATTACTAGCAAAGATGGT+GGG 0.528220 6.3:-52909428 None:intergenic
GAGTTTGACGGTGAAATCAT+CGG 0.530218 6.3:-52909868 None:intergenic
GTCTTCTATGTGAGATTCAA+AGG 0.536038 6.3:+52909713 MS.gene84114:CDS
GGTATTACCGTCAACAGTAC+CGG 0.536641 6.3:-52909835 None:intergenic
GACGGTTGCAGTTCCTTCAC+CGG 0.537577 6.3:+52909816 MS.gene84114:CDS
TCGACGAAAACGAGAGGTTG+AGG 0.541634 6.3:+52909950 MS.gene84114:CDS
CTCAAGGGTGGGTGTTGCAA+CGG 0.547090 6.3:-52909288 None:intergenic
TCCGCCGCTTGATTTGATGC+CGG 0.547623 6.3:+52910128 MS.gene84114:CDS
AAGTAGAGAATCCGGTATGA+CGG 0.547644 6.3:+52910092 MS.gene84114:CDS
GGGGTTCCAAACAATAAAAG+TGG 0.554485 6.3:-52909408 None:intergenic
GATATCATCGAGTTCTTCAC+CGG 0.561771 6.3:+52909906 MS.gene84114:CDS
CAAACAGACGGTGGTGCTCA+AGG 0.562268 6.3:+52910069 MS.gene84114:CDS
GAATAGATCTCTGAGACTCA+AGG 0.566281 6.3:-52909304 None:intergenic
AATAGATCTCTGAGACTCAA+GGG 0.568049 6.3:-52909303 None:intergenic
CTTCGGATTCATTTCCTCGC+CGG 0.573414 6.3:-52910169 None:intergenic
CTATCGACGAGGTTATTTCG+TGG 0.578836 6.3:+52909372 MS.gene84114:CDS
GAAATCATCGGCATCGCCGT+TGG 0.579266 6.3:-52909856 None:intergenic
ACAGACGACGGTGAAGGTGT+TGG 0.580465 6.3:-52909751 None:intergenic
TGATATCACCTGTTCTTCAC+CGG 0.582429 6.3:-52909890 None:intergenic
ATGATTTCACCGTCAAACTC+CGG 0.595073 6.3:+52909871 MS.gene84114:CDS
AACAATAACACTCAAACAGA+CGG 0.595180 6.3:+52910057 MS.gene84114:CDS
ACCGTCAACAGTACCGGTGA+AGG 0.597630 6.3:-52909829 None:intergenic
TCATGTTCTTGACAATCCAA+CGG 0.598951 6.3:-52910312 None:intergenic
TTGTTGCGGCTACATCAACC+TGG 0.602172 6.3:+52910267 MS.gene84114:CDS
TTAGAAAAGTAGTACCTGAC+CGG 0.612069 6.3:+52909650 MS.gene84114:CDS
CAAATTACTAGCAAAGATGG+TGG 0.612678 6.3:-52909429 None:intergenic
AATTACTAGCAAAGATGGTG+GGG 0.618873 6.3:-52909427 None:intergenic
AAGGGTGGGTGTTGCAACGG+TGG 0.622209 6.3:-52909285 None:intergenic
ACCGCCGGCATCAAATCAAG+CGG 0.631218 6.3:-52910132 None:intergenic
GCCGCTTGATTTGATGCCGG+CGG 0.632055 6.3:+52910131 MS.gene84114:CDS
ACAGACACAGACGACGGTGA+AGG 0.632232 6.3:-52909757 None:intergenic
AAAAGTAGTACCTGACCGGT+GGG 0.635759 6.3:+52909654 MS.gene84114:CDS
GATCTCTGAGACTCAAGGGT+GGG 0.636992 6.3:-52909299 None:intergenic
AGCAGAAACTACAACAGCGA+CGG 0.641238 6.3:+52909798 MS.gene84114:CDS
ACTCATTTGAAAATTCCCAC+CGG 0.642486 6.3:-52909669 None:intergenic
GAGAGGATGATACGTTGTTG+CGG 0.642882 6.3:+52910253 MS.gene84114:CDS
GCCGGCATCAAATCAAGCGG+CGG 0.648795 6.3:-52910129 None:intergenic
GAAAAGTAGTACCTGACCGG+TGG 0.652133 6.3:+52909653 MS.gene84114:CDS
AGCTTCTCGACGAAAACGAG+AGG 0.661566 6.3:+52909944 MS.gene84114:CDS
TTGTGAAAATGGTGAAAGAG+AGG 0.661829 6.3:+52910236 MS.gene84114:CDS
TAGAGAATCCGGTATGACGG+CGG 0.661957 6.3:+52910095 MS.gene84114:CDS
CGATAGATTTATCATCGACG+AGG 0.666770 6.3:-52909355 None:intergenic
CCAGCTCCGGTGGAAAACAA+CGG 0.683738 6.3:+52909248 MS.gene84114:CDS
ACTGTTGACGGTAATACCAA+CGG 0.686195 6.3:+52909840 MS.gene84114:CDS
AGATCTCTGAGACTCAAGGG+TGG 0.688159 6.3:-52909300 None:intergenic
TTCTATGTGAGATTCAAAGG+AGG 0.697681 6.3:+52909716 MS.gene84114:CDS
CGATGATAAATCTATCGACG+AGG 0.705066 6.3:+52909361 MS.gene84114:CDS
GAATCCGAAGCTATTCGGTG+TGG 0.707189 6.3:+52910182 MS.gene84114:CDS
ATGATAATGATCGAACAGCG+TGG 0.724654 6.3:+52910331 MS.gene84114:CDS
GCAGAAACAGACACAGACGA+CGG 0.733840 6.3:-52909763 None:intergenic
AATAACACTCAAACAGACGG+TGG 0.734578 6.3:+52910060 MS.gene84114:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTGTTATTTTTTTTGCA+GGG + chr6.3:52909625-52909644 MS.gene84114:intron 20.0%
!!! TGTTTTGTTATTTTTTTTGC+AGG + chr6.3:52909624-52909643 MS.gene84114:intron 20.0%
!!! TTATATGTTTTTGTCAGAAA+CGG - chr6.3:52909335-52909354 None:intergenic 20.0%
!!! TTATTGTGTTTGAAATACTT+TGG - chr6.3:52909458-52909477 None:intergenic 20.0%
!!! TCAAATGAGTATTTTAGAAG+AGG + chr6.3:52909682-52909701 MS.gene84114:CDS 25.0%
AAATTACTAGCAAAGATGGT+GGG - chr6.3:52909431-52909450 None:intergenic 30.0%
AACAATAACACTCAAACAGA+CGG + chr6.3:52910057-52910076 MS.gene84114:CDS 30.0%
AAGCAAATTACTAGCAAAGA+TGG - chr6.3:52909435-52909454 None:intergenic 30.0%
!! ATGGATCCACTTTTATTGTT+TGG + chr6.3:52909402-52909421 MS.gene84114:CDS 30.0%
AATTACTAGCAAAGATGGTG+GGG - chr6.3:52909430-52909449 None:intergenic 35.0%
ACTCATTTGAAAATTCCCAC+CGG - chr6.3:52909672-52909691 None:intergenic 35.0%
AGAGAAAACGGTTGTGAAAA+TGG + chr6.3:52910225-52910244 MS.gene84114:CDS 35.0%
CAAATTACTAGCAAAGATGG+TGG - chr6.3:52909432-52909451 None:intergenic 35.0%
GAAATGAATCCGAAGCTATT+CGG + chr6.3:52910177-52910196 MS.gene84114:CDS 35.0%
GCAAAACGAGTTAGAGAAAA+CGG + chr6.3:52910213-52910232 MS.gene84114:CDS 35.0%
GTCTTCTATGTGAGATTCAA+AGG + chr6.3:52909713-52909732 MS.gene84114:CDS 35.0%
TAGACGAATTGAAGCGATAA+GGG + chr6.3:52909588-52909607 MS.gene84114:intron 35.0%
TCATGTTCTTGACAATCCAA+CGG - chr6.3:52910315-52910334 None:intergenic 35.0%
TTAGAAAAGTAGTACCTGAC+CGG + chr6.3:52909650-52909669 MS.gene84114:CDS 35.0%
TTAGACGAATTGAAGCGATA+AGG + chr6.3:52909587-52909606 MS.gene84114:intron 35.0%
TTCTATGTGAGATTCAAAGG+AGG + chr6.3:52909716-52909735 MS.gene84114:CDS 35.0%
TTGTGAAAATGGTGAAAGAG+AGG + chr6.3:52910236-52910255 MS.gene84114:CDS 35.0%
!! AATAGATCTCTGAGACTCAA+GGG - chr6.3:52909306-52909325 None:intergenic 35.0%
AAGTAGAGAATCCGGTATGA+CGG + chr6.3:52910092-52910111 MS.gene84114:CDS 40.0%
AATAACACTCAAACAGACGG+TGG + chr6.3:52910060-52910079 MS.gene84114:CDS 40.0%
ACTGTTGACGGTAATACCAA+CGG + chr6.3:52909840-52909859 MS.gene84114:CDS 40.0%
ATGATTTCACCGTCAAACTC+CGG + chr6.3:52909871-52909890 MS.gene84114:CDS 40.0%
CGATAGATTTATCATCGACG+AGG - chr6.3:52909358-52909377 None:intergenic 40.0%
CGATGATAAATCTATCGACG+AGG + chr6.3:52909361-52909380 MS.gene84114:CDS 40.0%
GAGTTTGACGGTGAAATCAT+CGG - chr6.3:52909871-52909890 None:intergenic 40.0%
GATATCATCGAGTTCTTCAC+CGG + chr6.3:52909906-52909925 MS.gene84114:CDS 40.0%
GGGGTTCCAAACAATAAAAG+TGG - chr6.3:52909411-52909430 None:intergenic 40.0%
TGATATCACCTGTTCTTCAC+CGG - chr6.3:52909893-52909912 None:intergenic 40.0%
! ATGATAATGATCGAACAGCG+TGG + chr6.3:52910331-52910350 MS.gene84114:CDS 40.0%
! GTTATTTCGTGGAACGAAGA+TGG + chr6.3:52909383-52909402 MS.gene84114:CDS 40.0%
! GTTTTTGTCAGAAACGGTGT+AGG - chr6.3:52909329-52909348 None:intergenic 40.0%
!! ATTGAGTTGACGAACAAAGC+TGG - chr6.3:52909486-52909505 None:intergenic 40.0%
!! GAATAGATCTCTGAGACTCA+AGG - chr6.3:52909307-52909326 None:intergenic 40.0%
AAAAGTAGTACCTGACCGGT+GGG + chr6.3:52909654-52909673 MS.gene84114:CDS 45.0%
AGCAGAAACTACAACAGCGA+CGG + chr6.3:52909798-52909817 MS.gene84114:CDS 45.0%
GAGAGGATGATACGTTGTTG+CGG + chr6.3:52910253-52910272 MS.gene84114:CDS 45.0%
GCTCAAGGAAGTAGAGAATC+CGG + chr6.3:52910084-52910103 MS.gene84114:CDS 45.0%
GGTATTACCGTCAACAGTAC+CGG - chr6.3:52909838-52909857 None:intergenic 45.0%
TGTTCTTCACCGGAGTTTGA+CGG - chr6.3:52909883-52909902 None:intergenic 45.0%
TTTGAAAATTCCCACCGGTC+AGG - chr6.3:52909667-52909686 None:intergenic 45.0%
! ATCAAATCAAGCGGCGGATT+TGG - chr6.3:52910126-52910145 None:intergenic 45.0%
! CTATCGACGAGGTTATTTCG+TGG + chr6.3:52909372-52909391 MS.gene84114:CDS 45.0%
!! GCTACATCAACCTGGTTCTA+CGG + chr6.3:52910275-52910294 MS.gene84114:CDS 45.0%
!! GTTTCTCCGTTGTTTTCCAC+CGG - chr6.3:52909257-52909276 None:intergenic 45.0%
!! AAAGAAAATAAAATAATAAT+AGG - chr6.3:52909533-52909552 None:intergenic 5.0%
AGCTTCTCGACGAAAACGAG+AGG + chr6.3:52909944-52909963 MS.gene84114:CDS 50.0%
ATCGCCACACCGAATAGCTT+CGG - chr6.3:52910189-52910208 None:intergenic 50.0%
CTTCGGATTCATTTCCTCGC+CGG - chr6.3:52910172-52910191 None:intergenic 50.0%
GAAAAGTAGTACCTGACCGG+TGG + chr6.3:52909653-52909672 MS.gene84114:CDS 50.0%
GATTTCACGTCCGTAGAACC+AGG - chr6.3:52910288-52910307 None:intergenic 50.0%
GCAGAAACAGACACAGACGA+CGG - chr6.3:52909766-52909785 None:intergenic 50.0%
GGACGTGAAATCTGAACCGT+TGG + chr6.3:52910296-52910315 MS.gene84114:CDS 50.0%
GTCAAACTCCGGTGAAGAAC+AGG + chr6.3:52909882-52909901 MS.gene84114:CDS 50.0%
TAGAGAATCCGGTATGACGG+CGG + chr6.3:52910095-52910114 MS.gene84114:CDS 50.0%
TCCTTCACCGGTACTGTTGA+CGG + chr6.3:52909828-52909847 MS.gene84114:CDS 50.0%
TCGACGAAAACGAGAGGTTG+AGG + chr6.3:52909950-52909969 MS.gene84114:CDS 50.0%
TTGTTGCGGCTACATCAACC+TGG + chr6.3:52910267-52910286 MS.gene84114:CDS 50.0%
! CTCGTTTTCGTCGAGAAGCT+CGG - chr6.3:52909944-52909963 None:intergenic 50.0%
! GAATCCGAAGCTATTCGGTG+TGG + chr6.3:52910182-52910201 MS.gene84114:CDS 50.0%
!! AAGCTATTCGGTGTGGCGAT+TGG + chr6.3:52910189-52910208 MS.gene84114:CDS 50.0%
!! AGATCTCTGAGACTCAAGGG+TGG - chr6.3:52909303-52909322 None:intergenic 50.0%
!! GATCTCTGAGACTCAAGGGT+GGG - chr6.3:52909302-52909321 None:intergenic 50.0%
ACAGACACAGACGACGGTGA+AGG - chr6.3:52909760-52909779 None:intergenic 55.0%
ACCGCCGGCATCAAATCAAG+CGG - chr6.3:52910135-52910154 None:intergenic 55.0%
CAAACAGACGGTGGTGCTCA+AGG + chr6.3:52910069-52910088 MS.gene84114:CDS 55.0%
CCAGCTCCGGTGGAAAACAA+CGG + chr6.3:52909248-52909267 MS.gene84114:CDS 55.0%
GAAATCATCGGCATCGCCGT+TGG - chr6.3:52909859-52909878 None:intergenic 55.0%
GACGGTTGCAGTTCCTTCAC+CGG + chr6.3:52909816-52909835 MS.gene84114:CDS 55.0%
TGATGCCGGCGGTGGAAAAA+CGG + chr6.3:52910142-52910161 MS.gene84114:CDS 55.0%
TGGATTCACCGCCGTCATAC+CGG - chr6.3:52910106-52910125 None:intergenic 55.0%
! ACAGACGACGGTGAAGGTGT+TGG - chr6.3:52909754-52909773 None:intergenic 55.0%
! CTCAAGGGTGGGTGTTGCAA+CGG - chr6.3:52909291-52909310 None:intergenic 55.0%
! TCCGCCGCTTGATTTGATGC+CGG + chr6.3:52910128-52910147 MS.gene84114:CDS 55.0%
! TTTTCGTCGAGAAGCTCGGC+CGG - chr6.3:52909940-52909959 None:intergenic 55.0%
!! ACCGTCAACAGTACCGGTGA+AGG - chr6.3:52909832-52909851 None:intergenic 55.0%
GCCGGCATCAAATCAAGCGG+CGG - chr6.3:52910132-52910151 None:intergenic 60.0%
GCGGTGGAAAAACGGAGCTC+CGG + chr6.3:52910150-52910169 MS.gene84114:CDS 60.0%
TTCTTCACCGGCACGTGCAC+CGG + chr6.3:52909918-52909937 MS.gene84114:CDS 60.0%
! AAGGGTGGGTGTTGCAACGG+TGG - chr6.3:52909288-52909307 None:intergenic 60.0%
! GCCGCTTGATTTGATGCCGG+CGG + chr6.3:52910131-52910150 MS.gene84114:CDS 60.0%
! GCTTGATTTGATGCCGGCGG+TGG + chr6.3:52910134-52910153 MS.gene84114:CDS 60.0%
! GGGTGTTGCAACGGTGGTTG+TGG - chr6.3:52909282-52909301 None:intergenic 60.0%
! TTTTCCACCGGAGCTGGCGA+AGG - chr6.3:52909245-52909264 None:intergenic 60.0%
!! CCGTTGTTTTCCACCGGAGC+TGG - chr6.3:52909251-52909270 None:intergenic 60.0%
!! GAGCTCCGTTTTTCCACCGC+CGG - chr6.3:52910150-52910169 None:intergenic 60.0%
GGAAAAACGGAGCTCCGGCG+AGG + chr6.3:52910155-52910174 MS.gene84114:CDS 65.0%
AGCTCGGCCGGTGCACGTGC+CGG - chr6.3:52909928-52909947 None:intergenic 75.0%
GGCTCCTTCGCCAGCTCCGG+TGG + chr6.3:52909238-52909257 MS.gene84114:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 52909236 52910395 52909236 ID=MS.gene84114
chr6.3 mRNA 52909236 52910395 52909236 ID=MS.gene84114.t1;Parent=MS.gene84114
chr6.3 exon 52909236 52909511 52909236 ID=MS.gene84114.t1.exon1;Parent=MS.gene84114.t1
chr6.3 CDS 52909236 52909511 52909236 ID=cds.MS.gene84114.t1;Parent=MS.gene84114.t1
chr6.3 exon 52909646 52910395 52909646 ID=MS.gene84114.t1.exon2;Parent=MS.gene84114.t1
chr6.3 CDS 52909646 52910395 52909646 ID=cds.MS.gene84114.t1;Parent=MS.gene84114.t1
Gene Sequence

>MS.gene84114

ATGGCTCCTTCGCCAGCTCCGGTGGAAAACAACGGAGAAACAACCACAACCACCGTTGCAACACCCACCCTTGAGTCTCAGAGATCTATTCCTACACCGTTTCTGACAAAAACATATAACCTCGTCGATGATAAATCTATCGACGAGGTTATTTCGTGGAACGAAGATGGATCCACTTTTATTGTTTGGAACCCCACCATCTTTGCTAGTAATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGCTTTGTTCGTCAACTCAATACTTATGTAAATTCAACTTTCTTTCCTATTATTATTTTATTTTCTTTTATGCTTGTTTTTGTATGAATTTTAATTAATATTTTAGACGAATTGAAGCGATAAGGGCTGAATTTTAACTTGTTTTGTTATTTTTTTTGCAGGGATTTAGAAAAGTAGTACCTGACCGGTGGGAATTTTCAAATGAGTATTTTAGAAGAGGAGAAAAACGTCTTCTATGTGAGATTCAAAGGAGGAAGATCTGTTCTCCAACACCTTCACCGTCGTCTGTGTCTGTTTCTGCTGTTGTAACAGCAGCAGAAACTACAACAGCGACGGTTGCAGTTCCTTCACCGGTACTGTTGACGGTAATACCAACGGCGATGCCGATGATTTCACCGTCAAACTCCGGTGAAGAACAGGTGATATCATCGAGTTCTTCACCGGCACGTGCACCGGCCGAGCTTCTCGACGAAAACGAGAGGTTGAGGAAAGAGAACTCTCTATTGAATAAAGAACTTGCTGAGATGAGATTGCTTTGTAACAATATATACTCTCTGATGTCAAATTTTGCAAACAATAACACTCAAACAGACGGTGGTGCTCAAGGAAGTAGAGAATCCGGTATGACGGCGGTGAATCCAAATCCGCCGCTTGATTTGATGCCGGCGGTGGAAAAACGGAGCTCCGGCGAGGAAATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCAAAACGAGTTAGAGAAAACGGTTGTGAAAATGGTGAAAGAGAGGATGATACGTTGTTGCGGCTACATCAACCTGGTTCTACGGACGTGAAATCTGAACCGTTGGATTGTCAAGAACATGATAATGATCGAACAGCGTGGTTGAATCAGAGTCGTAGAAAGAATCAGAGTTTGTGTAAATGA
Protein sequence

>MS.gene84114.t1

MAPSPAPVENNGETTTTTVATPTLESQRSIPTPFLTKTYNLVDDKSIDEVISWNEDGSTFIVWNPTIFASNLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKICSPTPSPSSVSVSAVVTAAETTTATVAVPSPVLLTVIPTAMPMISPSNSGEEQVISSSSSPARAPAELLDENERLRKENSLLNKELAEMRLLCNNIYSLMSNFANNNTQTDGGAQGSRESGMTAVNPNPPLDLMPAVEKRSSGEEMNPKLFGVAIGAKRVRENGCENGEREDDTLLRLHQPGSTDVKSEPLDCQEHDNDRTAWLNQSRRKNQSLCK