AlfalfaGEDB | MS.gene84164

M. sativa cultivar XinJiangDaYe / MS.gene84164

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84164.t1	XP_003594940.1	91.3	299	26	0	1	299	90	388	1.20E-155	559.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84164.t1	P93604	42.0	288	159	5	2	284	339	623	1.7e-52	208.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84164.t1	A2Q1L7	91.3	299	26	0	1	299	90	388	8.8e-156	559.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84164.t1	MTR_2g036480	90.794	315	29	0	1	315	90	404	0.0	597
MS.gene84164.t1	MTR_2g036490	71.299	331	94	1	6	336	137	466	4.24e-174	491
MS.gene84164.t1	MTR_2g036460	69.851	335	99	2	2	336	144	476	2.16e-170	482
MS.gene84164.t1	MTR_2g036440	53.094	307	136	6	7	311	81	381	9.57e-104	310
MS.gene84164.t1	MTR_2g036500	53.094	307	136	6	7	311	80	380	3.61e-103	309
MS.gene84164.t1	MTR_2g036430	45.482	332	155	7	8	333	81	392	4.45e-93	283
MS.gene84164.t1	MTR_1g027460	39.432	317	181	5	2	312	30	341	9.10e-76	237
MS.gene84164.t1	MTR_1g027320	42.105	285	159	3	2	284	3	283	6.72e-74	231
MS.gene84164.t1	MTR_1g027250	40.210	286	165	3	2	285	3	284	8.58e-73	228
MS.gene84164.t1	MTR_1g026990	38.182	330	190	6	2	321	3	328	3.41e-72	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84164.t1	AT5G38280	36.972	284	169	9	7	284	336	615	1.45e-57	197
MS.gene84164.t1	AT5G38280	36.972	284	169	9	7	284	336	615	1.76e-57	197
MS.gene84164.t1	AT5G38240	36.218	312	180	8	7	308	276	578	2.72e-57	195
MS.gene84164.t1	AT5G38240	36.218	312	180	8	7	308	322	624	5.74e-57	195
MS.gene84164.t1	AT1G66980	38.194	288	160	6	7	284	793	1072	6.16e-57	199
MS.gene84164.t1	AT1G66980	38.194	288	160	6	7	284	810	1089	6.94e-57	199
MS.gene84164.t1	AT1G66980	38.194	288	160	6	7	284	839	1118	8.36e-57	199
MS.gene84164.t1	AT1G66980	38.194	288	160	6	7	284	837	1116	9.02e-57	199
MS.gene84164.t1	AT5G38240	36.218	312	180	8	7	308	340	642	9.86e-57	194
MS.gene84164.t1	AT5G24080	41.053	285	158	7	7	286	408	687	1.02e-56	196

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Find 49 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAATTTGACACAAGA+GGG	0.521143	2.3:-52128241	MS.gene84164:CDS
AAATGTGATGTTTATAGTTT+TGG	0.244726	2.3:-52128571	MS.gene84164:CDS
AAGAAAATTTGACACAAGAG+GGG	0.677620	2.3:-52128240	MS.gene84164:CDS
AAGCTTCGTGAGATTGCGAT+TGG	0.499770	2.3:-52128823	MS.gene84164:CDS
AATCCAATATTAGCTAACTT+TGG	0.480707	2.3:+52128700	None:intergenic
AATGTTTGAGAATAATGAAT+TGG	0.409015	2.3:-52128455	MS.gene84164:CDS
ACAAAATCTTTGAGGGAATC+TGG	0.302551	2.3:-52128178	MS.gene84164:CDS
ACATCACATTTATATGTTTC+TGG	0.134185	2.3:+52128583	None:intergenic
ACCCGATTATGGAAGGGAAA+TGG	0.445185	2.3:+52128271	None:intergenic
ACTGTTGTGAAGATGTTGGA+GGG	0.668533	2.3:-52128316	MS.gene84164:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAATTTGACACAAGAG+GGG	-	chr2.3:52129012-52129031	MS.gene84164:CDS	30.0%
AGACAACAAAAAACCATGTT+AGG	-	chr2.3:52128135-52128154	MS.gene84164:CDS	30.0%
CATTGCATACAAAATCTTTG+AGG	-	chr2.3:52129066-52129085	MS.gene84164:CDS	30.0%
GAATGTTAAAAGTTGCTCAA+TGG	-	chr2.3:52128874-52128893	MS.gene84164:CDS	30.0%
GTACCAAAGTTAGCTAATAT+TGG	-	chr2.3:52128549-52128568	MS.gene84164:CDS	30.0%
TTCAATATTCACCAGATGAT+AGG	-	chr2.3:52128901-52128920	MS.gene84164:CDS	30.0%
TTGGTTATCAAAAAGGACAT+GGG	-	chr2.3:52128773-52128792	MS.gene84164:CDS	30.0%
TTTGGTTATCAAAAAGGACA+TGG	-	chr2.3:52128772-52128791	MS.gene84164:CDS	30.0%
ATTGCGATTGGAATAGCTAA+AGG	-	chr2.3:52128441-52128460	MS.gene84164:CDS	35.0%
TTTCAAAACCTAACTCATCG+CGG	+	chr2.3:52128410-52128429	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	52128132	52129142	52128132	ID=MS.gene84164
chr2.3	mRNA	52128132	52129142	52128132	ID=MS.gene84164.t1;Parent=MS.gene84164
chr2.3	exon	52128132	52129142	52128132	ID=MS.gene84164.t1.exon1;Parent=MS.gene84164.t1
chr2.3	CDS	52128132	52129142	52128132	ID=cds.MS.gene84164.t1;Parent=MS.gene84164.t1

Gene Sequence

>MS.gene84164

ATGAGACAACAAAAAACCATGTTAGGTTCTAGTGCTTCTGGAACTGACTTCAAAGGAGAATTATCAAATGGAGAAAAAGTTGCAGTCAAAGATTTCCACTGTTTTGAAATGGGAATGGAAGAACAATTCATAGCAGATGTCAGCACAATTGCAAGAATTCATCATATCAATATAGTCAAAGTTTATGGATTCTGCCTTCACCGTGATAAAAACGCACTTGTTTATGAGTATGTTGAAAATGGTTCTCTAGCCAAGTATTTATTTGATAGCAAGAACCGCGATGAGTTAGGTTTTGAAAAGCTTCGTGAGATTGCGATTGGAATAGCTAAAGGAATTTCTTATTTACATGAGGAATGTGAATATAGAATAATTCATTATGATATTAGACCTACAAATATTCTTCTTGACAAGGAATTTGTACCAAAGTTAGCTAATATTGGATTGTCAAAGCTTCGAAGTAGAGAAAGTCACATTGCAATGAATAATCGTTTTAAAGGAAAAGCAGCTTATGCAGCACCTGAAATGTGGAAGGCTTATCCAGAAACATATAAATGTGATGTTTATAGTTTTGGTATTCTTCTATTTGAAATTGTAGGGAGAAGAACGCGTTTTATTGATCATAGATATAGTGAATCACAAATTTGGTTATCAAAAAGGACATGGGAAATGTTTGAGAATAATGAATTGGTTGCTATGCTTGAACTTTGTGGAATTGAAGAGAAAGATAATGAGAAAGCTGAGAGAATGTTAAAAGTTGCTCAATGGTGTGTTCAATATTCACCAGATGATAGGCCTCTGATGAGTACTGTTGTGAAGATGTTGGAGGGTGAAAAAGAAATTTTACAGGCTCCATTTCCCTTCCATAATCGGGTTTCGGCTAAAGAAAATTTGACACAAGAGGGGAGCACTGCAGATTCTGATACTGCTACCTCATCATTGCATACAAAATCTTTGAGGGAATCTGGTTTCAGAGCCATACAAAATACATTTCAGATTGAAAAACCTACTTAG

Protein sequence

>MS.gene84164.t1

MRQQKTMLGSSASGTDFKGELSNGEKVAVKDFHCFEMGMEEQFIADVSTIARIHHINIVKVYGFCLHRDKNALVYEYVENGSLAKYLFDSKNRDELGFEKLREIAIGIAKGISYLHEECEYRIIHYDIRPTNILLDKEFVPKLANIGLSKLRSRESHIAMNNRFKGKAAYAAPEMWKAYPETYKCDVYSFGILLFEIVGRRTRFIDHRYSESQIWLSKRTWEMFENNELVAMLELCGIEEKDNEKAERMLKVAQWCVQYSPDDRPLMSTVVKMLEGEKEILQAPFPFHNRVSAKENLTQEGSTADSDTATSSLHTKSLRESGFRAIQNTFQIEKPT