AlfalfaGEDB | MS.gene84168

M. sativa cultivar XinJiangDaYe / MS.gene84168

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84168.t1	AES65186.1	84	363	42	1	1	363	50	396	6.30E-174	620.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84168.t1	P93604	44.4	315	162	6	4	309	317	627	4.2e-70	266.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84168.t1	G7IG57	84.0	363	42	1	1	363	50	396	4.5e-174	620.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84168.t1	MTR_2g036430	84.022	363	42	1	1	363	50	396	0.0	645
MS.gene84168.t1	MTR_2g036440	72.452	363	95	3	1	362	51	409	0.0	546
MS.gene84168.t1	MTR_2g036500	70.248	363	103	2	1	362	50	408	0.0	530
MS.gene84168.t1	MTR_2g036460	54.783	345	153	3	1	344	119	461	8.16e-132	385
MS.gene84168.t1	MTR_2g036490	51.507	365	168	4	1	362	108	466	1.22e-126	372
MS.gene84168.t1	MTR_1g027460	49.045	314	149	7	4	311	8	316	2.29e-95	288
MS.gene84168.t1	MTR_2g036480	48.726	314	142	6	14	310	66	377	1.73e-94	288
MS.gene84168.t1	MTR_1g027250	50.345	290	133	7	28	311	5	289	8.80e-91	275
MS.gene84168.t1	MTR_1g031460	47.452	314	153	7	3	309	269	577	1.20e-90	284
MS.gene84168.t1	MTR_6g082860	45.566	327	162	8	4	318	37	359	2.07e-90	276

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84168.t1	AT1G34300	46.823	299	153	3	14	308	472	768	3.02e-83	270
MS.gene84168.t1	AT4G32300	45.806	310	152	7	4	305	472	773	4.76e-81	264
MS.gene84168.t1	AT5G38240	42.763	304	160	6	15	312	260	555	7.79e-79	253
MS.gene84168.t1	AT5G38240	42.763	304	160	6	15	312	306	601	2.96e-78	252
MS.gene84168.t1	AT5G38240	42.763	304	160	6	15	312	324	619	4.39e-78	252
MS.gene84168.t1	AT5G24080	47.797	295	141	7	11	298	388	676	5.76e-78	254
MS.gene84168.t1	AT5G24080	47.797	295	141	7	11	298	388	676	5.76e-78	254
MS.gene84168.t1	AT5G24080	47.797	295	141	7	11	298	515	803	4.48e-77	254
MS.gene84168.t1	AT5G38280	41.639	305	167	7	15	311	320	621	1.65e-76	248
MS.gene84168.t1	AT5G38280	41.639	305	167	7	15	311	320	621	2.08e-76	248

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Find 74 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGATGCTGAAAAGT+TGG	0.369076	2.3:-52174856	MS.gene84168:CDS
AAACCAAAATCAGCAACTTT+AGG	0.213283	2.3:+52175098	None:intergenic
AACCAAAATCAGCAACTTTA+GGG	0.275623	2.3:+52175099	None:intergenic
AACCCTAAAGTTGCTGATTT+TGG	0.134710	2.3:-52175101	MS.gene84168:CDS
AAGACCTACAATGAGTCTTG+TGG	0.664150	2.3:-52174733	MS.gene84168:CDS
AAGCTTCAAGAGATTGCAAT+TGG	0.361999	2.3:-52175221	MS.gene84168:CDS
AAGGTTCTTCATGGGAGTTC+TGG	0.306331	2.3:-52175428	MS.gene84168:CDS
AAGTGCGACGTTTATAGTTT+TGG	0.315915	2.3:-52174969	MS.gene84168:CDS
AATACTCACATAACGATGAC+CGG	0.561586	2.3:-52175053	MS.gene84168:CDS
AATGGTTTCCAATGTGGGTT+TGG	0.361374	2.3:-52174881	MS.gene84168:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAATCAGCAACTTT+AGG	+	chr2.3:52175010-52175029	None:intergenic	30.0%
AACCAAAATCAGCAACTTTA+GGG	+	chr2.3:52175009-52175028	None:intergenic	30.0%
AGATTGTAAAGAGAATGGTT+AGG	-	chr2.3:52175314-52175333	MS.gene84168:CDS	30.0%
CTTTGTCATGTGTTCAATAT+AGG	-	chr2.3:52175341-52175360	MS.gene84168:CDS	30.0%
GATTGTAAAGAGAATGGTTA+GGG	-	chr2.3:52175315-52175334	MS.gene84168:CDS	30.0%
GTCTAACAAGATTAAAGTGA+TGG	+	chr2.3:52174754-52174773	None:intergenic	30.0%
TATAAAGGAAGCTTCAGTAA+TGG	-	chr2.3:52174638-52174657	MS.gene84168:CDS	30.0%
TATGGAGATTGTAAAGAGAA+TGG	-	chr2.3:52175309-52175328	MS.gene84168:CDS	30.0%
TTGATCTGTGATATTGGTAT+TGG	+	chr2.3:52175481-52175500	None:intergenic	30.0%
AAGCTTCAAGAGATTGCAAT+TGG	-	chr2.3:52174884-52174903	MS.gene84168:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	52174518	52175609	52174518	ID=MS.gene84168
chr2.3	mRNA	52174518	52175609	52174518	ID=MS.gene84168.t1;Parent=MS.gene84168
chr2.3	exon	52174518	52175609	52174518	ID=MS.gene84168.t1.exon1;Parent=MS.gene84168.t1
chr2.3	CDS	52174518	52175609	52174518	ID=cds.MS.gene84168.t1;Parent=MS.gene84168.t1

Gene Sequence

>MS.gene84168

ATGGGAAAATTTCTAGAGGATATAGAAAAGGAGAAACAAGTTAGATTCACTGATCAACAACTAAGAATTGCGACCGATAACTTTTCCTATTTGTTGGGAACCGGAGGTTTTGGAGCAGTTTATAAAGGAAGCTTCAGTAATGGAATCATGATAGCTGTTAAGGTTCTTCATGGGAGTTCTGGTAAGAGAAATGATCAACAATTTATGGCAGAAGTAGGTACTATTGGTAAAATCCATCACTTTAATCTTGTTAGACTATATGGATTTTGCTTTGAAAGAAATTTGATAGCACTTGTTTATGAATATATGGGAAATGGATCTCTTGACAAGTTTTTGTTTCAAGAGAACACGATTTTAGGGTTTGAAAAGCTTCAAGAGATTGCAATTGGGACAGCAAAAGGCATTGCTTACTTGCATGAAGAGTGTCAACAAAGAATAATCCATTATGATATAAAACCAGGAAATATTCTCTTAGATAAGAATTTCAACCCTAAAGTTGCTGATTTTGGTTTAGCCAAACTTTGCAATAGAGAAAATACTCACATAACGATGACCGGAGGAAGAGGAACGCCTGGTTATGCCGCACCTGAACTTTGGATGCCATTTCCTGTCACTCACAAGTGCGACGTTTATAGTTTTGGTATACTACTATTTGAAATTATAGGTAGGAGAAAAAACCATGATGTAAACCTTTCAGAAAGTCAAGAATGGTTTCCAATGTGGGTTTGGAAAAAATTTGATGCTGAAAAGTTGGAGGAGTTAGTAGCAGCTTGTGGCATAGAGGAGCAAAATATGGAGATTGTAAAGAGAATGGTTAGGGTGGCTTTGTCATGTGTTCAATATAGGCCAGAATCAAGACCTACAATGAGTCTTGTGGTACAAATGTTGGAAGGTTTAGTTGAAATTCCAAAGCCATTGAATCCTTTTCAATATATGATTGATGGGACTTTTTCTTCTCTTCCAATACCAATATCACAGATCAATACTGATACAAGTATTGGTTCTGGATCGTCTGTGATGGTAACTGAATCTAGCGTTGAAGGTGTTACTCCTGTAATGACGAAGTACCAAGTCGAATCAACATCTGTCTAA

Protein sequence

>MS.gene84168.t1

MGKFLEDIEKEKQVRFTDQQLRIATDNFSYLLGTGGFGAVYKGSFSNGIMIAVKVLHGSSGKRNDQQFMAEVGTIGKIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDKFLFQENTILGFEKLQEIAIGTAKGIAYLHEECQQRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRKNHDVNLSESQEWFPMWVWKKFDAEKLEELVAACGIEEQNMEIVKRMVRVALSCVQYRPESRPTMSLVVQMLEGLVEIPKPLNPFQYMIDGTFSSLPIPISQINTDTSIGSGSSVMVTESSVEGVTPVMTKYQVESTSV