Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84208.t1 | GAU27459.1 | 92.2 | 153 | 10 | 1 | 1 | 151 | 1 | 153 | 1.00E-45 | 193 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84208.t1 | O49595 | 81.0 | 100 | 19 | 0 | 3 | 102 | 5 | 104 | 4.7e-23 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84208.t1 | A0A2Z6N780 | 92.2 | 153 | 10 | 1 | 1 | 151 | 1 | 153 | 7.4e-46 | 193.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84208.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84208.t1 | MTR_7g068280 | 98.658 | 149 | 2 | 0 | 1 | 149 | 1 | 149 | 6.67e-100 | 284 |
| MS.gene84208.t1 | MTR_8g073345 | 56.923 | 130 | 48 | 3 | 16 | 145 | 9 | 130 | 1.24e-37 | 125 |
| MS.gene84208.t1 | MTR_3g115580 | 79.221 | 77 | 16 | 0 | 46 | 122 | 40 | 116 | 2.00e-36 | 123 |
| MS.gene84208.t1 | MTR_8g073345 | 56.349 | 126 | 47 | 3 | 16 | 141 | 9 | 126 | 2.63e-35 | 120 |
| MS.gene84208.t1 | MTR_5g024180 | 58.268 | 127 | 44 | 4 | 16 | 141 | 9 | 127 | 3.36e-35 | 119 |
| MS.gene84208.t1 | MTR_1g115220 | 51.402 | 107 | 48 | 2 | 47 | 150 | 98 | 203 | 1.23e-27 | 102 |
| MS.gene84208.t1 | MTR_7g082820 | 56.818 | 88 | 37 | 1 | 42 | 129 | 4 | 90 | 4.26e-26 | 96.7 |
| MS.gene84208.t1 | MTR_4g094622 | 48.315 | 89 | 46 | 0 | 38 | 126 | 51 | 139 | 3.66e-23 | 89.4 |
| MS.gene84208.t1 | MTR_5g024180 | 55.682 | 88 | 35 | 2 | 58 | 141 | 3 | 90 | 3.49e-21 | 82.8 |
| MS.gene84208.t1 | MTR_1g022345 | 43.820 | 89 | 48 | 2 | 47 | 134 | 554 | 641 | 4.48e-13 | 65.9 |
| MS.gene84208.t1 | MTR_8g099305 | 43.421 | 76 | 40 | 1 | 47 | 122 | 262 | 334 | 8.53e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84208.t1 | AT3G51880 | 71.141 | 149 | 40 | 1 | 3 | 151 | 5 | 150 | 4.02e-65 | 197 |
| MS.gene84208.t1 | AT3G51880 | 71.233 | 146 | 39 | 1 | 3 | 148 | 5 | 147 | 1.54e-63 | 192 |
| MS.gene84208.t1 | AT3G51880 | 71.233 | 146 | 39 | 1 | 3 | 148 | 5 | 147 | 1.54e-63 | 192 |
| MS.gene84208.t1 | AT3G51880 | 71.233 | 146 | 39 | 1 | 3 | 148 | 5 | 147 | 1.54e-63 | 192 |
| MS.gene84208.t1 | AT3G51880 | 69.784 | 139 | 39 | 1 | 3 | 141 | 5 | 140 | 3.48e-59 | 181 |
| MS.gene84208.t1 | AT1G20693 | 67.619 | 105 | 34 | 0 | 42 | 146 | 29 | 133 | 5.44e-41 | 134 |
| MS.gene84208.t1 | AT1G20696 | 62.903 | 124 | 42 | 1 | 22 | 141 | 2 | 125 | 2.16e-40 | 132 |
| MS.gene84208.t1 | AT1G20693 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 8.84e-39 | 129 |
| MS.gene84208.t1 | AT1G20693 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 9.10e-39 | 129 |
| MS.gene84208.t1 | AT1G20696 | 66.019 | 103 | 31 | 1 | 24 | 122 | 4 | 106 | 1.11e-35 | 121 |
| MS.gene84208.t1 | AT1G20696 | 66.667 | 102 | 30 | 1 | 25 | 122 | 5 | 106 | 1.49e-35 | 120 |
| MS.gene84208.t1 | AT2G17560 | 61.468 | 109 | 38 | 2 | 42 | 149 | 26 | 131 | 2.59e-35 | 119 |
| MS.gene84208.t1 | AT2G17560 | 61.468 | 109 | 38 | 2 | 42 | 149 | 26 | 131 | 3.83e-35 | 119 |
| MS.gene84208.t1 | AT2G17560 | 61.468 | 109 | 38 | 2 | 42 | 149 | 26 | 131 | 3.83e-35 | 119 |
| MS.gene84208.t1 | AT1G20696 | 63.636 | 88 | 32 | 0 | 59 | 146 | 1 | 88 | 1.00e-29 | 104 |
| MS.gene84208.t1 | AT1G20696 | 63.855 | 83 | 30 | 0 | 59 | 141 | 1 | 83 | 2.05e-27 | 98.6 |
| MS.gene84208.t1 | AT4G35570 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 3.49e-26 | 96.3 |
| MS.gene84208.t1 | AT4G35570 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 3.49e-26 | 96.3 |
| MS.gene84208.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene84208.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene84208.t1 | AT2G34450 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 4.94e-23 | 89.0 |
| MS.gene84208.t1 | AT5G23420 | 54.651 | 86 | 38 | 1 | 31 | 116 | 95 | 179 | 1.17e-21 | 87.4 |
| MS.gene84208.t1 | AT2G34450 | 44.444 | 90 | 49 | 1 | 51 | 139 | 63 | 152 | 1.46e-21 | 85.1 |
Find 40 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTCCTTCTTAGTCTT+TGG | 0.199866 | 7.3:+36906293 | None:intergenic |
| TGGTTTGTTGGGATCTTTCT+TGG | 0.220642 | 7.3:+36906268 | None:intergenic |
| GCTGATACGGCTTTCACATT+AGG | 0.283191 | 7.3:+36906100 | None:intergenic |
| TTTGCAGCCTTGGCTTCATA+TGG | 0.316878 | 7.3:+36905662 | None:intergenic |
| CTGATACGGCTTTCACATTA+GGG | 0.317016 | 7.3:+36906101 | None:intergenic |
| TTAGTCTTTGGCACCTTCTC+AGG | 0.326317 | 7.3:+36906305 | None:intergenic |
| TGATTGTAGGTTGGAAAGGC+TGG | 0.360863 | 7.3:-36905990 | MS.gene84208:intron |
| AAGATCCCAACAAACCAAAA+AGG | 0.405230 | 7.3:-36906262 | MS.gene84208:CDS |
| ATGAAGCCAAGGCTGCAAAA+AGG | 0.405842 | 7.3:-36905658 | MS.gene84208:CDS |
| TCTGTTGTTTACAGAAAAGT+AGG | 0.423191 | 7.3:-36906350 | MS.gene84208:intron |
| GAAAGGCTGGAGGAGAGAAA+TGG | 0.460200 | 7.3:-36905977 | MS.gene84208:CDS |
| GAAACTAACCGGTCATCAAC+TGG | 0.469423 | 7.3:+36907374 | None:intergenic |
| TCATCATCGTCCGCTGAACT+TGG | 0.475576 | 7.3:+36905508 | None:intergenic |
| AGGGAACAGCAAAGACTTCA+AGG | 0.490288 | 7.3:-36907409 | MS.gene84208:CDS |
| GAAATGGAAATCCTTGACTA+AGG | 0.502988 | 7.3:-36905961 | MS.gene84208:CDS |
| CAGAAAAGTAGGAAAGAGAA+AGG | 0.505983 | 7.3:-36906339 | MS.gene84208:CDS |
| ATGTAAACTTACAGCTGATA+CGG | 0.518522 | 7.3:+36906087 | None:intergenic |
| AGAACGAAGACGATGACAAA+GGG | 0.518815 | 7.3:-36907434 | None:intergenic |
| AAAGACTAAGAAGGAGAAGA+AGG | 0.533667 | 7.3:-36906291 | MS.gene84208:CDS |
| CAGGAAGACGAAGAAAGCGC+TGG | 0.539312 | 7.3:+36906235 | None:intergenic |
| GGATTTCAGAAAGACTTTCA+AGG | 0.542513 | 7.3:-36906131 | MS.gene84208:CDS |
| GAAGGTGCCAAAGACTAAGA+AGG | 0.548134 | 7.3:-36906300 | MS.gene84208:CDS |
| AATAATGAAGATGAAGCAAG+TGG | 0.555668 | 7.3:-36905454 | MS.gene84208:CDS |
| GATTTGATTGTAGGTTGGAA+AGG | 0.555671 | 7.3:-36905994 | MS.gene84208:intron |
| GGCTGCTGCTAAACCTGAGA+AGG | 0.556201 | 7.3:-36906318 | MS.gene84208:CDS |
| TGAAGATGAAGCAAGTGGAG+AGG | 0.558529 | 7.3:-36905449 | MS.gene84208:CDS |
| AAGTTCAGCGGACGATGATG+AGG | 0.594191 | 7.3:-36905506 | MS.gene84208:CDS |
| GAAGACGATGACAAAGGGCA+AGG | 0.595311 | 7.3:-36907429 | None:intergenic |
| AAAAGCTCCATATGAAGCCA+AGG | 0.600500 | 7.3:-36905669 | MS.gene84208:CDS |
| TTGTAGGTTGGAAAGGCTGG+AGG | 0.616392 | 7.3:-36905987 | MS.gene84208:intron |
| TTCAGCGGACGATGATGAGG+AGG | 0.617699 | 7.3:-36905503 | MS.gene84208:CDS |
| AAGACGATGACAAAGGGCAA+GGG | 0.619855 | 7.3:-36907428 | None:intergenic |
| ATTGCTTACAGCCTTAGTCA+AGG | 0.624911 | 7.3:+36905950 | None:intergenic |
| AGGAAGACGAAGAAAGCGCT+GGG | 0.627394 | 7.3:+36906236 | None:intergenic |
| GGGAACAGCAAAGACTTCAA+GGG | 0.641543 | 7.3:-36907408 | MS.gene84208:CDS |
| TAGAACGAAGACGATGACAA+AGG | 0.648840 | 7.3:-36907435 | None:intergenic |
| TATGAATGCTTATAATAACA+AGG | 0.656932 | 7.3:-36905615 | MS.gene84208:intron |
| ATGTTGATAGCCAAGTTCAG+CGG | 0.662316 | 7.3:-36905518 | MS.gene84208:intron |
| TGATGAGGAGGAATCAGACA+AGG | 0.693157 | 7.3:-36905491 | MS.gene84208:CDS |
| AAGACGAAGAAAGCGCTGGG+AGG | 0.711277 | 7.3:+36906239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAGAAATATGAAAAAA+AGG | + | chr7.3:36906268-36906287 | None:intergenic | 15.0% |
| !! | GAAATTAGAAATAAGAAAAA+AGG | + | chr7.3:36906073-36906092 | None:intergenic | 15.0% |
| !! | TATATATCTATCTATTAAAG+AGG | + | chr7.3:36905724-36905743 | None:intergenic | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | - | chr7.3:36906100-36906119 | MS.gene84208:CDS | 15.0% |
| !!! | TTTTTATTCTAAAAATGTTC+TGG | - | chr7.3:36906296-36906315 | MS.gene84208:CDS | 15.0% |
| !! | AACTGTTACAAATCATTAAT+TGG | + | chr7.3:36906378-36906397 | None:intergenic | 20.0% |
| !! | ATACAATAGAAATACGAAAA+AGG | + | chr7.3:36905871-36905890 | None:intergenic | 20.0% |
| !! | GGATTTATTCTGTTAAATAA+TGG | - | chr7.3:36907119-36907138 | MS.gene84208:intron | 20.0% |
| !! | TATGAATGCTTATAATAACA+AGG | - | chr7.3:36907248-36907267 | MS.gene84208:intron | 20.0% |
| !! | TGATTATAGATACTTTATAG+CGG | - | chr7.3:36905642-36905661 | MS.gene84208:CDS | 20.0% |
| !!! | CTTTCTTATTTTGAATGTAA+AGG | - | chr7.3:36907170-36907189 | MS.gene84208:intron | 20.0% |
| !!! | TAAGTCAGAAAACTTTAAAA+AGG | + | chr7.3:36906691-36906710 | None:intergenic | 20.0% |
| !!! | TTTTGATTCAAAAAATGTTC+TGG | - | chr7.3:36905890-36905909 | MS.gene84208:intron | 20.0% |
| ! | AAACAACAAAACTAGAAACA+CGG | + | chr7.3:36907284-36907303 | None:intergenic | 25.0% |
| ! | AAATCCTCACTATAAAAGAA+TGG | + | chr7.3:36906718-36906737 | None:intergenic | 25.0% |
| ! | ATACACATTTATTACTCTCT+AGG | + | chr7.3:36905956-36905975 | None:intergenic | 25.0% |
| ! | CTAACTGTCCAAAAAAATAT+CGG | + | chr7.3:36905678-36905697 | None:intergenic | 25.0% |
| ! | TAATTCGTGTCTGAAAAATT+TGG | - | chr7.3:36906838-36906857 | MS.gene84208:intron | 25.0% |
| !! | TTAAAGAGGAAAAACTTTTG+CGG | + | chr7.3:36905710-36905729 | None:intergenic | 25.0% |
| !!! | ATTGATAGCACTTTTATACA+TGG | + | chr7.3:36905619-36905638 | None:intergenic | 25.0% |
| AACAACAAAACTAGAAACAC+GGG | + | chr7.3:36907283-36907302 | None:intergenic | 30.0% | |
| AATAATGAAGATGAAGCAAG+TGG | - | chr7.3:36907409-36907428 | MS.gene84208:CDS | 30.0% | |
| ACACAGATATGTTAATACAG+TGG | + | chr7.3:36907073-36907092 | None:intergenic | 30.0% | |
| ATGTAAACTTACAGCTGATA+CGG | + | chr7.3:36906779-36906798 | None:intergenic | 30.0% | |
| GACATCATTATACTGAAAAG+AGG | - | chr7.3:36907098-36907117 | MS.gene84208:intron | 30.0% | |
| TTAAAAATCCTTTGCTTACG+CGG | + | chr7.3:36906016-36906035 | None:intergenic | 30.0% | |
| ! | CTATTCATTCTATGCCTTTT+TGG | - | chr7.3:36906413-36906432 | MS.gene84208:intron | 30.0% |
| ! | TCTGTTGTTTACAGAAAAGT+AGG | - | chr7.3:36906513-36906532 | MS.gene84208:intron | 30.0% |
| ! | TCTTCCATTCTTTTATAGTG+AGG | - | chr7.3:36906711-36906730 | MS.gene84208:intron | 30.0% |
| !! | AAATAAGAAAAAAGGTGCCT+CGG | + | chr7.3:36906065-36906084 | None:intergenic | 30.0% |
| !! | AATATGAAAAAAAGGTGCCT+TGG | + | chr7.3:36906260-36906279 | None:intergenic | 30.0% |
| !! | ACTTTGATTTGATTGTAGGT+TGG | - | chr7.3:36906864-36906883 | MS.gene84208:intron | 30.0% |
| !! | GTGTACTTTGATTTGATTGT+AGG | - | chr7.3:36906860-36906879 | MS.gene84208:intron | 30.0% |
| !!! | TGTTTTAAAAATCCTTCCCT+TGG | + | chr7.3:36906215-36906234 | None:intergenic | 30.0% |
| AAAGACTAAGAAGGAGAAGA+AGG | - | chr7.3:36906572-36906591 | MS.gene84208:intron | 35.0% | |
| AAGATCCCAACAAACCAAAA+AGG | - | chr7.3:36906601-36906620 | MS.gene84208:intron | 35.0% | |
| ATTTATTACTCTCTAGGCGA+AGG | + | chr7.3:36906138-36906157 | None:intergenic | 35.0% | |
| CAAATCATTAATTGGTGCAG+TGG | + | chr7.3:36906370-36906389 | None:intergenic | 35.0% | |
| CAGAAAAGTAGGAAAGAGAA+AGG | - | chr7.3:36906524-36906543 | MS.gene84208:intron | 35.0% | |
| GAAATGGAAATCCTTGACTA+AGG | - | chr7.3:36906902-36906921 | MS.gene84208:intron | 35.0% | |
| GGATTTCAGAAAGACTTTCA+AGG | - | chr7.3:36906732-36906751 | MS.gene84208:intron | 35.0% | |
| GTAAATCACCAACACCTTTA+CGG | + | chr7.3:36905592-36905611 | None:intergenic | 35.0% | |
| TAAAACATGAGGTTGTGAGT+TGG | - | chr7.3:36905831-36905850 | MS.gene84208:intron | 35.0% | |
| TTGCTCGAATATTACTCTCT+AGG | + | chr7.3:36906341-36906360 | None:intergenic | 35.0% | |
| TTGTATGTCATTGTCCGTAA+AGG | - | chr7.3:36905575-36905594 | MS.gene84208:intron | 35.0% | |
| ! | GATTTGATTGTAGGTTGGAA+AGG | - | chr7.3:36906869-36906888 | MS.gene84208:intron | 35.0% |
| ! | TTCTTCTCCTTCTTAGTCTT+TGG | + | chr7.3:36906573-36906592 | None:intergenic | 35.0% |
| !! | ACTTTTTAGCAGTGCCAAAA+AGG | + | chr7.3:36906430-36906449 | None:intergenic | 35.0% |
| !!! | GCAAAGGCTTTTAAAACATG+AGG | - | chr7.3:36905820-36905839 | MS.gene84208:intron | 35.0% |
| !!! | GGAAGGATTTTTAAAACACG+AGG | - | chr7.3:36906217-36906236 | MS.gene84208:intron | 35.0% |
| !!! | TTTTGAAACCAGTTGATGAC+CGG | - | chr7.3:36905481-36905500 | MS.gene84208:CDS | 35.0% |
| AAAAGCTCCATATGAAGCCA+AGG | - | chr7.3:36907194-36907213 | MS.gene84208:intron | 40.0% | |
| AATATTACTCTCTAGGCGAG+GGG | + | chr7.3:36906334-36906353 | None:intergenic | 40.0% | |
| AGATGCATCACGATACACAA+CGG | + | chr7.3:36906813-36906832 | None:intergenic | 40.0% | |
| ATTGCTTACAGCCTTAGTCA+AGG | + | chr7.3:36906916-36906935 | None:intergenic | 40.0% | |
| CTGATACGGCTTTCACATTA+GGG | + | chr7.3:36906765-36906784 | None:intergenic | 40.0% | |
| GAATATTACTCTCTAGGCGA+GGG | + | chr7.3:36906335-36906354 | None:intergenic | 40.0% | |
| GCGATGATACAGAAACTAAC+CGG | + | chr7.3:36905503-36905522 | None:intergenic | 40.0% | |
| TGACAGACAGAGATACTAAC+AGG | + | chr7.3:36906650-36906669 | None:intergenic | 40.0% | |
| ! | AAAAACTTTTGCGGTAGCCA+CGG | + | chr7.3:36905701-36905720 | None:intergenic | 40.0% |
| ! | AACTTTCCTTTTTGCAGCCT+TGG | + | chr7.3:36907214-36907233 | None:intergenic | 40.0% |
| ! | TACTTTATAGCGGAAGTCAG+AGG | - | chr7.3:36905652-36905671 | MS.gene84208:CDS | 40.0% |
| !! | ATGAAAAAAAGGTGCCTTGG+CGG | + | chr7.3:36906257-36906276 | None:intergenic | 40.0% |
| !! | ATGTTGATAGCCAAGTTCAG+CGG | - | chr7.3:36907345-36907364 | MS.gene84208:intron | 40.0% |
| !! | GAAATACGAAAAAGGTGCCA+CGG | + | chr7.3:36905863-36905882 | None:intergenic | 40.0% |
| !! | TGGTTTGTTGGGATCTTTCT+TGG | + | chr7.3:36906598-36906617 | None:intergenic | 40.0% |
| !!! | GTCAGAGGCCGATATTTTTT+TGG | - | chr7.3:36905667-36905686 | MS.gene84208:CDS | 40.0% |
| !!! | TTTTTTTGGACAGTTAGCCG+TGG | - | chr7.3:36905681-36905700 | MS.gene84208:intron | 40.0% |
| AGGGAACAGCAAAGACTTCA+AGG | - | chr7.3:36905454-36905473 | MS.gene84208:CDS | 45.0% | |
| ATGAAGCCAAGGCTGCAAAA+AGG | - | chr7.3:36907205-36907224 | MS.gene84208:intron | 45.0% | |
| CGAATATTACTCTCTAGGCG+AGG | + | chr7.3:36906336-36906355 | None:intergenic | 45.0% | |
| GAAACTAACCGGTCATCAAC+TGG | + | chr7.3:36905492-36905511 | None:intergenic | 45.0% | |
| GCTGATACGGCTTTCACATT+AGG | + | chr7.3:36906766-36906785 | None:intergenic | 45.0% | |
| GGGAACAGCAAAGACTTCAA+GGG | - | chr7.3:36905455-36905474 | MS.gene84208:CDS | 45.0% | |
| TCTGGTCAAGATCTGAAGAC+TGG | - | chr7.3:36905908-36905927 | MS.gene84208:intron | 45.0% | |
| TGAAGATGAAGCAAGTGGAG+AGG | - | chr7.3:36907414-36907433 | MS.gene84208:CDS | 45.0% | |
| TGATGAGGAGGAATCAGACA+AGG | - | chr7.3:36907372-36907391 | MS.gene84208:intron | 45.0% | |
| TTGTTAAGCCGCGTAAGCAA+AGG | - | chr7.3:36906005-36906024 | MS.gene84208:intron | 45.0% | |
| TTTGCAGCCTTGGCTTCATA+TGG | + | chr7.3:36907204-36907223 | None:intergenic | 45.0% | |
| ! | GTCATTGTCCGTAAAGGTGT+TGG | - | chr7.3:36905581-36905600 | MS.gene84208:intron | 45.0% |
| ! | TGATTGTAGGTTGGAAAGGC+TGG | - | chr7.3:36906873-36906892 | MS.gene84208:intron | 45.0% |
| ! | TTAGTCTTTGGCACCTTCTC+AGG | + | chr7.3:36906561-36906580 | None:intergenic | 45.0% |
| !! | GAAGGTGCCAAAGACTAAGA+AGG | - | chr7.3:36906563-36906582 | MS.gene84208:intron | 45.0% |
| !! | TAAGAAAAAAGGTGCCTCGG+CGG | + | chr7.3:36906062-36906081 | None:intergenic | 45.0% |
| !!! | GGAGGCCTTTTTGGTTTGTT+GGG | + | chr7.3:36906609-36906628 | None:intergenic | 45.0% |
| AAGTTCAGCGGACGATGATG+AGG | - | chr7.3:36907357-36907376 | MS.gene84208:intron | 50.0% | |
| ACCGGTGGAAGTCGTATTAC+GGG | - | chr7.3:36906465-36906484 | MS.gene84208:intron | 50.0% | |
| CACCGGTGGAAGTCGTATTA+CGG | - | chr7.3:36906464-36906483 | MS.gene84208:intron | 50.0% | |
| GAAAGGCTGGAGGAGAGAAA+TGG | - | chr7.3:36906886-36906905 | MS.gene84208:intron | 50.0% | |
| TCATCATCGTCCGCTGAACT+TGG | + | chr7.3:36907358-36907377 | None:intergenic | 50.0% | |
| TCCCGTAATACGACTTCCAC+CGG | + | chr7.3:36906469-36906488 | None:intergenic | 50.0% | |
| ! | TTGTAGGTTGGAAAGGCTGG+AGG | - | chr7.3:36906876-36906895 | MS.gene84208:intron | 50.0% |
| !! | AGGAAGACGAAGAAAGCGCT+GGG | + | chr7.3:36906630-36906649 | None:intergenic | 50.0% |
| !! | ATACGAAAAAGGTGCCACGG+TGG | + | chr7.3:36905860-36905879 | None:intergenic | 50.0% |
| !!! | GGGAGGCCTTTTTGGTTTGT+TGG | + | chr7.3:36906610-36906629 | None:intergenic | 50.0% |
| AATACGACTTCCACCGGTGG+CGG | + | chr7.3:36906463-36906482 | None:intergenic | 55.0% | |
| AGCCACGTAGCGACAAGCAA+AGG | - | chr7.3:36905804-36905823 | MS.gene84208:intron | 55.0% | |
| AGCCTTTGCTTGTCGCTACG+TGG | + | chr7.3:36905809-36905828 | None:intergenic | 55.0% | |
| AGTTATTCAAGCCCCGCCAC+CGG | - | chr7.3:36906447-36906466 | MS.gene84208:intron | 55.0% | |
| ATCCTTCCCTTGGCACTACG+CGG | + | chr7.3:36906205-36906224 | None:intergenic | 55.0% | |
| CGTAATACGACTTCCACCGG+TGG | + | chr7.3:36906466-36906485 | None:intergenic | 55.0% | |
| GGCTGCTGCTAAACCTGAGA+AGG | - | chr7.3:36906545-36906564 | MS.gene84208:intron | 55.0% | |
| GTTAAGCCGCGTAGTGCCAA+GGG | - | chr7.3:36906196-36906215 | MS.gene84208:intron | 55.0% | |
| TGTTAAGCCGCGTAGTGCCA+AGG | - | chr7.3:36906195-36906214 | MS.gene84208:intron | 55.0% | |
| TTCAGCGGACGATGATGAGG+AGG | - | chr7.3:36907360-36907379 | MS.gene84208:intron | 55.0% | |
| TTGTGAGTTCGAGTCCGCCA+AGG | - | chr7.3:36906240-36906259 | MS.gene84208:CDS | 55.0% | |
| ! | CAGGAAGACGAAGAAAGCGC+TGG | + | chr7.3:36906631-36906650 | None:intergenic | 55.0% |
| ! | TTGTGAGTTGGAGTCCACCG+TGG | - | chr7.3:36905843-36905862 | MS.gene84208:intron | 55.0% |
| !! | AAGACGAAGAAAGCGCTGGG+AGG | + | chr7.3:36906627-36906646 | None:intergenic | 55.0% |
| !!! | AAAGCGCTGGGAGGCCTTTT+TGG | + | chr7.3:36906618-36906637 | None:intergenic | 55.0% |
| ATACGACTTCCACCGGTGGC+GGG | + | chr7.3:36906462-36906481 | None:intergenic | 60.0% | |
| TTGTGAGTTCGAGTCCGCCG+AGG | - | chr7.3:36906045-36906064 | MS.gene84208:intron | 60.0% | |
| AGCCGCGTAGTGCCAAGGGA+AGG | - | chr7.3:36906200-36906219 | MS.gene84208:intron | 65.0% | |
| TACGACTTCCACCGGTGGCG+GGG | + | chr7.3:36906461-36906480 | None:intergenic | 65.0% | |
| TATTCAAGCCCCGCCACCGG+TGG | - | chr7.3:36906450-36906469 | MS.gene84208:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 36905441 | 36907444 | 36905441 | ID=MS.gene84208 |
| chr7.3 | mRNA | 36905441 | 36907444 | 36905441 | ID=MS.gene84208.t1;Parent=MS.gene84208 |
| chr7.3 | exon | 36907383 | 36907444 | 36907383 | ID=MS.gene84208.t1.exon1;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36907383 | 36907444 | 36907383 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| chr7.3 | exon | 36906236 | 36906358 | 36906236 | ID=MS.gene84208.t1.exon2;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36906236 | 36906358 | 36906236 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| chr7.3 | exon | 36906099 | 36906156 | 36906099 | ID=MS.gene84208.t1.exon3;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36906099 | 36906156 | 36906099 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| chr7.3 | exon | 36905959 | 36906003 | 36905959 | ID=MS.gene84208.t1.exon4;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36905959 | 36906003 | 36905959 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| chr7.3 | exon | 36905616 | 36905693 | 36905616 | ID=MS.gene84208.t1.exon5;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36905616 | 36905693 | 36905616 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| chr7.3 | exon | 36905441 | 36905530 | 36905441 | ID=MS.gene84208.t1.exon6;Parent=MS.gene84208.t1 |
| chr7.3 | CDS | 36905441 | 36905530 | 36905441 | ID=cds.MS.gene84208.t1;Parent=MS.gene84208.t1 |
| Gene Sequence |
| Protein sequence |
