Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84329.t1 | XP_003596811.1 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 1.80E-109 | 405.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84329.t1 | Q8RYD6 | 38.5 | 304 | 137 | 9 | 3 | 265 | 25 | 319 | 2.6e-32 | 140.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84329.t1 | G7ITS3 | 80.3 | 290 | 37 | 3 | 1 | 272 | 1 | 288 | 1.3e-109 | 405.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene84329.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84329.t1 | MTR_2g086390 | 82.594 | 293 | 25 | 4 | 1 | 272 | 1 | 288 | 1.07e-168 | 468 |
MS.gene84329.t1 | MTR_2g086390 | 80.460 | 261 | 25 | 4 | 1 | 240 | 1 | 256 | 1.96e-144 | 407 |
MS.gene84329.t1 | MTR_2g086340 | 64.000 | 325 | 63 | 8 | 1 | 272 | 1 | 324 | 4.13e-122 | 351 |
MS.gene84329.t1 | MTR_8g043960 | 35.581 | 267 | 112 | 12 | 18 | 237 | 32 | 285 | 1.05e-25 | 103 |
MS.gene84329.t1 | MTR_7g088090 | 33.569 | 283 | 111 | 10 | 19 | 238 | 25 | 293 | 3.77e-25 | 102 |
MS.gene84329.t1 | MTR_3g010660 | 32.131 | 305 | 128 | 11 | 19 | 257 | 29 | 320 | 4.31e-25 | 102 |
MS.gene84329.t1 | MTR_7g104480 | 41.481 | 135 | 62 | 3 | 18 | 135 | 47 | 181 | 4.36e-22 | 95.1 |
MS.gene84329.t1 | MTR_7g104480 | 57.732 | 97 | 38 | 1 | 172 | 265 | 323 | 419 | 1.31e-20 | 90.9 |
MS.gene84329.t1 | MTR_6g026800 | 31.022 | 274 | 129 | 7 | 19 | 237 | 25 | 293 | 2.61e-17 | 80.5 |
MS.gene84329.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 37 | 241 | 4.14e-17 | 79.3 |
MS.gene84329.t1 | MTR_5g088230 | 31.081 | 222 | 135 | 5 | 17 | 237 | 32 | 236 | 4.40e-17 | 79.0 |
MS.gene84329.t1 | MTR_3g101780 | 52.564 | 78 | 30 | 1 | 160 | 237 | 325 | 395 | 4.20e-15 | 75.1 |
MS.gene84329.t1 | MTR_3g101780 | 37.600 | 125 | 57 | 6 | 18 | 134 | 35 | 146 | 7.09e-14 | 71.2 |
MS.gene84329.t1 | MTR_4g085910 | 45.098 | 102 | 44 | 3 | 163 | 263 | 281 | 371 | 7.72e-13 | 68.2 |
MS.gene84329.t1 | MTR_4g094390 | 35.556 | 135 | 63 | 4 | 117 | 251 | 77 | 187 | 1.69e-12 | 65.1 |
MS.gene84329.t1 | MTR_7g015990 | 43.956 | 91 | 45 | 3 | 153 | 237 | 76 | 166 | 4.31e-12 | 63.9 |
MS.gene84329.t1 | MTR_1g098590 | 28.641 | 206 | 109 | 5 | 68 | 253 | 34 | 221 | 5.41e-11 | 61.6 |
MS.gene84329.t1 | MTR_5g022780 | 39.516 | 124 | 53 | 3 | 141 | 249 | 120 | 236 | 5.75e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84329.t1 | AT3G44460 | 41.958 | 286 | 119 | 10 | 18 | 265 | 43 | 319 | 1.50e-47 | 161 |
MS.gene84329.t1 | AT3G56850 | 34.615 | 260 | 116 | 11 | 18 | 237 | 24 | 269 | 4.44e-28 | 109 |
MS.gene84329.t1 | AT2G36270 | 56.436 | 101 | 43 | 1 | 151 | 250 | 312 | 412 | 1.56e-27 | 110 |
MS.gene84329.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.38e-27 | 110 |
MS.gene84329.t1 | AT2G36270 | 31.638 | 177 | 57 | 6 | 18 | 132 | 45 | 219 | 3.37e-14 | 72.4 |
MS.gene84329.t1 | AT2G36270 | 55.340 | 103 | 45 | 1 | 151 | 252 | 312 | 414 | 2.38e-27 | 110 |
MS.gene84329.t1 | AT2G36270 | 31.638 | 177 | 57 | 6 | 18 | 132 | 45 | 219 | 3.37e-14 | 72.4 |
MS.gene84329.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 3.23e-25 | 100 |
MS.gene84329.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 5.26e-25 | 100 |
MS.gene84329.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 5.26e-25 | 100 |
MS.gene84329.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 39 | 235 | 5.26e-25 | 100 |
MS.gene84329.t1 | AT2G41070 | 32.287 | 223 | 116 | 4 | 25 | 238 | 48 | 244 | 5.47e-25 | 100 |
MS.gene84329.t1 | AT5G44080 | 30.319 | 188 | 98 | 6 | 81 | 252 | 120 | 290 | 1.54e-15 | 75.5 |
MS.gene84329.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 311 | 380 | 9.13e-15 | 73.9 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 3.90e-11 | 63.2 |
MS.gene84329.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.04e-14 | 73.9 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.58e-11 | 63.5 |
MS.gene84329.t1 | AT1G45249 | 48.718 | 78 | 32 | 1 | 160 | 237 | 326 | 395 | 1.04e-14 | 73.9 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 44 | 173 | 3.58e-11 | 63.5 |
MS.gene84329.t1 | AT1G03970 | 30.168 | 179 | 101 | 5 | 81 | 252 | 85 | 246 | 4.74e-14 | 70.9 |
MS.gene84329.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.70e-14 | 71.2 |
MS.gene84329.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.70e-14 | 71.2 |
MS.gene84329.t1 | AT4G34000 | 46.667 | 90 | 38 | 2 | 163 | 252 | 352 | 431 | 7.70e-14 | 71.2 |
MS.gene84329.t1 | AT3G19290 | 56.452 | 62 | 27 | 0 | 190 | 251 | 348 | 409 | 1.70e-13 | 70.1 |
MS.gene84329.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.72e-13 | 70.5 |
MS.gene84329.t1 | AT3G19290 | 59.016 | 61 | 25 | 0 | 190 | 250 | 348 | 408 | 1.72e-13 | 70.5 |
MS.gene84329.t1 | AT3G19290 | 51.316 | 76 | 35 | 1 | 190 | 265 | 348 | 421 | 3.29e-13 | 69.3 |
MS.gene84329.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 3.73e-13 | 69.3 |
MS.gene84329.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.78e-12 | 65.1 |
MS.gene84329.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 3.73e-13 | 69.3 |
MS.gene84329.t1 | AT1G49720 | 55.738 | 61 | 27 | 0 | 190 | 250 | 308 | 368 | 7.78e-12 | 65.1 |
MS.gene84329.t1 | AT1G49720 | 33.333 | 147 | 75 | 5 | 18 | 148 | 31 | 170 | 4.19e-13 | 68.9 |
MS.gene84329.t1 | AT1G49720 | 53.226 | 62 | 29 | 0 | 190 | 251 | 308 | 369 | 8.68e-12 | 65.1 |
MS.gene84329.t1 | AT2G17770 | 32.143 | 196 | 107 | 7 | 84 | 257 | 2 | 193 | 2.12e-12 | 64.7 |
MS.gene84329.t1 | AT4G34000 | 64.583 | 48 | 17 | 0 | 190 | 237 | 369 | 416 | 3.57e-12 | 66.2 |
MS.gene84329.t1 | AT1G45249 | 42.697 | 89 | 32 | 2 | 160 | 237 | 311 | 391 | 6.97e-12 | 65.5 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 5.35e-11 | 62.8 |
MS.gene84329.t1 | AT4G35900 | 52.941 | 68 | 27 | 1 | 195 | 257 | 216 | 283 | 5.38e-11 | 62.0 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.67e-11 | 62.0 |
MS.gene84329.t1 | AT1G45249 | 32.576 | 132 | 75 | 4 | 18 | 137 | 29 | 158 | 8.67e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCATCAATTATCCTCTTTC+TGG | 0.164582 | 2.2:+12173205 | None:intergenic |
ATGAGTTCCTAGCCAGTATT+TGG | 0.254341 | 2.2:-12173646 | MS.gene84329:CDS |
TAAAATGCTGAAACAATTTC+TGG | 0.256037 | 2.2:-12172679 | MS.gene84329:intron |
CTTGTCATTTGGTATGTTGC+AGG | 0.294849 | 2.2:+12173254 | None:intergenic |
TTTCGCTCCAATAGAACTTC+AGG | 0.322405 | 2.2:+12173179 | None:intergenic |
CCACTGAATATTGCAAGTTC+TGG | 0.324558 | 2.2:-12173293 | MS.gene84329:CDS |
ACTCAGCTCCACTTGTCATT+TGG | 0.334133 | 2.2:+12173243 | None:intergenic |
AGAAAACTTCGGATGAAGTT+TGG | 0.353717 | 2.2:-12173505 | MS.gene84329:CDS |
CAAAGTTCTTGAAATCATCT+AGG | 0.390515 | 2.2:+12173684 | None:intergenic |
GCAATCAGCAAAGGTTCAAA+AGG | 0.420453 | 2.2:-12172428 | MS.gene84329:CDS |
GACTGAATCACCAAGTTGTT+GGG | 0.423167 | 2.2:+12173550 | None:intergenic |
ATCACTGGAACTCCAAATAC+TGG | 0.430426 | 2.2:+12173634 | None:intergenic |
TTTCTTCTTTGAATTGTGGT+TGG | 0.440685 | 2.2:+12173465 | None:intergenic |
GAGGATTTCTTGGTAAAAGC+TGG | 0.453104 | 2.2:-12173383 | MS.gene84329:CDS |
GTCATTGAGGCTTATTCACC+AGG | 0.470334 | 2.2:+12172378 | None:intergenic |
AGACTGAATCACCAAGTTGT+TGG | 0.471123 | 2.2:+12173549 | None:intergenic |
ATCACCAAGTTGTTGGGAAC+TGG | 0.493001 | 2.2:+12173556 | None:intergenic |
CACACCAGTTCCCAACAACT+TGG | 0.498257 | 2.2:-12173560 | MS.gene84329:CDS |
TCCTCAAAAGTCATTTCTCC+AGG | 0.507331 | 2.2:+12173401 | None:intergenic |
CAATCAGCAAAGGTTCAAAA+GGG | 0.509524 | 2.2:-12172427 | MS.gene84329:CDS |
TTCGCTCCAATAGAACTTCA+GGG | 0.513014 | 2.2:+12173180 | None:intergenic |
TAGGAACTCATCCATGTTGA+GGG | 0.517404 | 2.2:+12173658 | None:intergenic |
TTGTGTAGTAGCTTCATCAC+TGG | 0.520796 | 2.2:+12173619 | None:intergenic |
ACGTTCTCGAGCAAGACGTC+AGG | 0.524988 | 2.2:-12173120 | MS.gene84329:intron |
ACCAGAAAGAGGATAATTGA+TGG | 0.532983 | 2.2:-12173206 | MS.gene84329:CDS |
TCTAGTTTGCAAGAAAACTT+CGG | 0.541175 | 2.2:-12173516 | MS.gene84329:CDS |
AAAGTTCTTGAAATCATCTA+GGG | 0.543413 | 2.2:+12173685 | None:intergenic |
GCAAAGAAAGCAATCAGCAA+AGG | 0.559335 | 2.2:-12172437 | MS.gene84329:CDS |
TTGTCGTTTCAGAATCATAG+TGG | 0.559475 | 2.2:-12173338 | MS.gene84329:CDS |
CGCTCCAATAGAACTTCAGG+GGG | 0.565451 | 2.2:+12173182 | None:intergenic |
CTAGGAACTCATCCATGTTG+AGG | 0.566833 | 2.2:+12173657 | None:intergenic |
CTCAAGAAGCAAGAAACACC+TGG | 0.571531 | 2.2:-12173419 | MS.gene84329:CDS |
AGGCTGAAGCTGAGAACAAG+AGG | 0.580689 | 2.2:-12172559 | MS.gene84329:CDS |
TGGAACTCCAAATACTGGCT+AGG | 0.584202 | 2.2:+12173639 | None:intergenic |
TCTACAACAATTAGATCAAG+AGG | 0.584508 | 2.2:-12173738 | MS.gene84329:CDS |
AATCAAGCTCAAGCACAACC+TGG | 0.585556 | 2.2:-12172396 | MS.gene84329:CDS |
GTGGAGCTGCTACCAGAAAG+AGG | 0.587980 | 2.2:-12173217 | MS.gene84329:CDS |
GGCTTATACAATAGAGCTAG+AGG | 0.593351 | 2.2:-12172730 | MS.gene84329:CDS |
GAACTTTGACTCCCTCAACA+TGG | 0.606896 | 2.2:-12173669 | MS.gene84329:CDS |
GCAACATACCAAATGACAAG+TGG | 0.610150 | 2.2:-12173251 | MS.gene84329:CDS |
ACAAGTGGAGCTGAGTCAAG+TGG | 0.615825 | 2.2:-12173236 | MS.gene84329:CDS |
CCAGAACTTGCAATATTCAG+TGG | 0.629052 | 2.2:+12173293 | None:intergenic |
TCGCTCCAATAGAACTTCAG+GGG | 0.629189 | 2.2:+12173181 | None:intergenic |
TGAGAACAAGAGGAAACAAG+AGG | 0.643173 | 2.2:-12172549 | MS.gene84329:intron |
AATCAGCAAAGGTTCAAAAG+GGG | 0.678708 | 2.2:-12172426 | MS.gene84329:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCTATTTAAATCTGAAAT+AGG | - | chr2.2:12173557-12173576 | MS.gene84329:CDS | 15.0% |
!! | TACTTATTAATCACATAACT+TGG | - | chr2.2:12173084-12173103 | MS.gene84329:intron | 20.0% |
!!! | TTATTTTCTTCTTTGAATTG+TGG | + | chr2.2:12172678-12172697 | None:intergenic | 20.0% |
!!! | TTTTTTATATGCAAACGTTA+CGG | + | chr2.2:12173371-12173390 | None:intergenic | 20.0% |
! | AAAAAAAAATCTTGCAATGC+AGG | - | chr2.2:12173385-12173404 | MS.gene84329:CDS | 25.0% |
! | AAAGTTCTTGAAATCATCTA+GGG | + | chr2.2:12172454-12172473 | None:intergenic | 25.0% |
! | AATGATGAAAAATCGAGAAT+CGG | - | chr2.2:12172989-12173008 | MS.gene84329:intron | 25.0% |
! | CAATACTGAAACTGAATATA+CGG | - | chr2.2:12173484-12173503 | MS.gene84329:CDS | 25.0% |
! | TAAAATGCTGAAACAATTTC+TGG | - | chr2.2:12173457-12173476 | MS.gene84329:CDS | 25.0% |
!! | AGATTTTAAATAACAGTCTG+TGG | - | chr2.2:12173266-12173285 | MS.gene84329:CDS | 25.0% |
!!! | ATGTCTCTGAAATTAAAGTT+GGG | - | chr2.2:12173321-12173340 | MS.gene84329:CDS | 25.0% |
!!! | TATGTCTCTGAAATTAAAGT+TGG | - | chr2.2:12173320-12173339 | MS.gene84329:CDS | 25.0% |
CAAAGTTCTTGAAATCATCT+AGG | + | chr2.2:12172455-12172474 | None:intergenic | 30.0% | |
TAAAATCGTGTTTACCTTTG+CGG | - | chr2.2:12173128-12173147 | MS.gene84329:CDS | 30.0% | |
TCTACAACAATTAGATCAAG+AGG | - | chr2.2:12172398-12172417 | MS.gene84329:CDS | 30.0% | |
TTTCTTCTTTGAATTGTGGT+TGG | + | chr2.2:12172674-12172693 | None:intergenic | 30.0% | |
! | TCTAGTTTGCAAGAAAACTT+CGG | - | chr2.2:12172620-12172639 | MS.gene84329:intron | 30.0% |
! | TGAGTGTCTCATTTCTTTTA+AGG | + | chr2.2:12172701-12172720 | None:intergenic | 30.0% |
!! | AATGACTTTTGAGGATTTCT+TGG | - | chr2.2:12172743-12172762 | MS.gene84329:intron | 30.0% |
!!! | TGGTTGGTTTTTATGAATCT+CGG | + | chr2.2:12172658-12172677 | None:intergenic | 30.0% |
AAATCCAACACAAATGTGAC+AGG | - | chr2.2:12173178-12173197 | MS.gene84329:CDS | 35.0% | |
AATCAGCAAAGGTTCAAAAG+GGG | - | chr2.2:12173710-12173729 | MS.gene84329:CDS | 35.0% | |
ACCAGAAAGAGGATAATTGA+TGG | - | chr2.2:12172930-12172949 | MS.gene84329:intron | 35.0% | |
ACCATCAATTATCCTCTTTC+TGG | + | chr2.2:12172934-12172953 | None:intergenic | 35.0% | |
AGAAAACTTCGGATGAAGTT+TGG | - | chr2.2:12172631-12172650 | MS.gene84329:intron | 35.0% | |
CAATCAGCAAAGGTTCAAAA+GGG | - | chr2.2:12173709-12173728 | MS.gene84329:CDS | 35.0% | |
TTATGTCACAGCCTAAATCA+CGG | + | chr2.2:12173292-12173311 | None:intergenic | 35.0% | |
TTGGATTTATCGCGAAATCA+AGG | + | chr2.2:12173166-12173185 | None:intergenic | 35.0% | |
! | GAAGTTTTCTTGCAAACTAG+AGG | + | chr2.2:12172621-12172640 | None:intergenic | 35.0% |
! | TTGTCGTTTCAGAATCATAG+TGG | - | chr2.2:12172798-12172817 | MS.gene84329:intron | 35.0% |
! | TTTTCTTGCAAACTAGAGGA+GGG | + | chr2.2:12172617-12172636 | None:intergenic | 35.0% |
!! | CTCTGAAATTAAAGTTGGGA+CGG | - | chr2.2:12173325-12173344 | MS.gene84329:CDS | 35.0% |
AGACTGAATCACCAAGTTGT+TGG | + | chr2.2:12172590-12172609 | None:intergenic | 40.0% | |
ATCACTGGAACTCCAAATAC+TGG | + | chr2.2:12172505-12172524 | None:intergenic | 40.0% | |
ATGAGTTCCTAGCCAGTATT+TGG | - | chr2.2:12172490-12172509 | MS.gene84329:intron | 40.0% | |
CCACTGAATATTGCAAGTTC+TGG | - | chr2.2:12172843-12172862 | MS.gene84329:intron | 40.0% | |
CCAGAACTTGCAATATTCAG+TGG | + | chr2.2:12172846-12172865 | None:intergenic | 40.0% | |
GACTGAATCACCAAGTTGTT+GGG | + | chr2.2:12172589-12172608 | None:intergenic | 40.0% | |
GAGGATTTCTTGGTAAAAGC+TGG | - | chr2.2:12172753-12172772 | MS.gene84329:intron | 40.0% | |
GCAAAGAAAGCAATCAGCAA+AGG | - | chr2.2:12173699-12173718 | MS.gene84329:CDS | 40.0% | |
GCAACATACCAAATGACAAG+TGG | - | chr2.2:12172885-12172904 | MS.gene84329:intron | 40.0% | |
GCAATCAGCAAAGGTTCAAA+AGG | - | chr2.2:12173708-12173727 | MS.gene84329:CDS | 40.0% | |
GGCTTATACAATAGAGCTAG+AGG | - | chr2.2:12173406-12173425 | MS.gene84329:CDS | 40.0% | |
GTGATTTAGGCTGTGACATA+AGG | - | chr2.2:12173291-12173310 | MS.gene84329:CDS | 40.0% | |
TAGGAACTCATCCATGTTGA+GGG | + | chr2.2:12172481-12172500 | None:intergenic | 40.0% | |
TCCTCAAAAGTCATTTCTCC+AGG | + | chr2.2:12172738-12172757 | None:intergenic | 40.0% | |
TGAACCTGTCACATTTGTGT+TGG | + | chr2.2:12173185-12173204 | None:intergenic | 40.0% | |
TGAGAACAAGAGGAAACAAG+AGG | - | chr2.2:12173587-12173606 | MS.gene84329:CDS | 40.0% | |
TTCGCTCCAATAGAACTTCA+GGG | + | chr2.2:12172959-12172978 | None:intergenic | 40.0% | |
TTGTGTAGTAGCTTCATCAC+TGG | + | chr2.2:12172520-12172539 | None:intergenic | 40.0% | |
TTTCGCTCCAATAGAACTTC+AGG | + | chr2.2:12172960-12172979 | None:intergenic | 40.0% | |
! | ACCTGGAGAAATGACTTTTG+AGG | - | chr2.2:12172734-12172753 | MS.gene84329:intron | 40.0% |
! | CTTGTCATTTGGTATGTTGC+AGG | + | chr2.2:12172885-12172904 | None:intergenic | 40.0% |
! | GTTTTCTTGCAAACTAGAGG+AGG | + | chr2.2:12172618-12172637 | None:intergenic | 40.0% |
!!! | GTAAGTGCGTTTTGATTGCT+CGG | + | chr2.2:12172432-12172451 | None:intergenic | 40.0% |
AAAGTCTGTGACCGTGATTG+AGG | + | chr2.2:12173209-12173228 | None:intergenic | 45.0% | |
AATCAAGCTCAAGCACAACC+TGG | - | chr2.2:12173740-12173759 | MS.gene84329:CDS | 45.0% | |
ACTCAGCTCCACTTGTCATT+TGG | + | chr2.2:12172896-12172915 | None:intergenic | 45.0% | |
ATCACCAAGTTGTTGGGAAC+TGG | + | chr2.2:12172583-12172602 | None:intergenic | 45.0% | |
CTAGGAACTCATCCATGTTG+AGG | + | chr2.2:12172482-12172501 | None:intergenic | 45.0% | |
CTCAAGAAGCAAGAAACACC+TGG | - | chr2.2:12172717-12172736 | MS.gene84329:CDS | 45.0% | |
GAACTTTGACTCCCTCAACA+TGG | - | chr2.2:12172467-12172486 | MS.gene84329:intron | 45.0% | |
TCGCTCCAATAGAACTTCAG+GGG | + | chr2.2:12172958-12172977 | None:intergenic | 45.0% | |
! | GCAAACGTTACGGACTATCA+CGG | + | chr2.2:12173361-12173380 | None:intergenic | 45.0% |
! | TGGAACTCCAAATACTGGCT+AGG | + | chr2.2:12172500-12172519 | None:intergenic | 45.0% |
! | TTGGAGAGTGCATCTGTGTA+AGG | - | chr2.2:12173103-12173122 | MS.gene84329:intron | 45.0% |
ACAAGTGGAGCTGAGTCAAG+TGG | - | chr2.2:12172900-12172919 | MS.gene84329:intron | 50.0% | |
ACAGTCTGTGGCCGTGATTT+AGG | - | chr2.2:12173278-12173297 | MS.gene84329:CDS | 50.0% | |
AGGCTGAAGCTGAGAACAAG+AGG | - | chr2.2:12173577-12173596 | MS.gene84329:CDS | 50.0% | |
CACACCAGTTCCCAACAACT+TGG | - | chr2.2:12172576-12172595 | MS.gene84329:intron | 50.0% | |
CGCTCCAATAGAACTTCAGG+GGG | + | chr2.2:12172957-12172976 | None:intergenic | 50.0% | |
GACAGGTTCAGCCTCAATCA+CGG | - | chr2.2:12173195-12173214 | MS.gene84329:CDS | 50.0% | |
TGGTCCCCCTGAAGTTCTAT+TGG | - | chr2.2:12172950-12172969 | MS.gene84329:intron | 50.0% | |
ACGTTCTCGAGCAAGACGTC+AGG | - | chr2.2:12173016-12173035 | MS.gene84329:intron | 55.0% | |
GGATTGTGAAGCGACCGCAA+AGG | + | chr2.2:12173145-12173164 | None:intergenic | 55.0% | |
GTGGAGCTGCTACCAGAAAG+AGG | - | chr2.2:12172919-12172938 | MS.gene84329:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 12172393 | 12173765 | 12172393 | ID=MS.gene84329 |
chr2.2 | mRNA | 12172393 | 12173765 | 12172393 | ID=MS.gene84329.t1;Parent=MS.gene84329 |
chr2.2 | exon | 12173121 | 12173765 | 12173121 | ID=MS.gene84329.t1.exon1;Parent=MS.gene84329.t1 |
chr2.2 | CDS | 12173121 | 12173765 | 12173121 | ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1 |
chr2.2 | exon | 12172680 | 12172751 | 12172680 | ID=MS.gene84329.t1.exon2;Parent=MS.gene84329.t1 |
chr2.2 | CDS | 12172680 | 12172751 | 12172680 | ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1 |
chr2.2 | exon | 12172550 | 12172579 | 12172550 | ID=MS.gene84329.t1.exon3;Parent=MS.gene84329.t1 |
chr2.2 | CDS | 12172550 | 12172579 | 12172550 | ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1 |
chr2.2 | exon | 12172393 | 12172464 | 12172393 | ID=MS.gene84329.t1.exon4;Parent=MS.gene84329.t1 |
chr2.2 | CDS | 12172393 | 12172464 | 12172393 | ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1 |
Gene Sequence |
Protein sequence |