AlfalfaGEDB | MS.gene84329

M. sativa cultivar XinJiangDaYe / MS.gene84329

KEGG: K14432
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84329.t1	XP_003596811.1	80.3	290	37	3	1	272	1	288	1.80E-109	405.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84329.t1	Q8RYD6	38.5	304	137	9	3	265	25	319	2.6e-32	140.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84329.t1	G7ITS3	80.3	290	37	3	1	272	1	288	1.3e-109	405.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene84329.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84329.t1	MTR_2g086390	82.594	293	25	4	1	272	1	288	1.07e-168	468
MS.gene84329.t1	MTR_2g086390	80.460	261	25	4	1	240	1	256	1.96e-144	407
MS.gene84329.t1	MTR_2g086340	64.000	325	63	8	1	272	1	324	4.13e-122	351
MS.gene84329.t1	MTR_8g043960	35.581	267	112	12	18	237	32	285	1.05e-25	103
MS.gene84329.t1	MTR_7g088090	33.569	283	111	10	19	238	25	293	3.77e-25	102
MS.gene84329.t1	MTR_3g010660	32.131	305	128	11	19	257	29	320	4.31e-25	102
MS.gene84329.t1	MTR_7g104480	41.481	135	62	3	18	135	47	181	4.36e-22	95.1
MS.gene84329.t1	MTR_7g104480	57.732	97	38	1	172	265	323	419	1.31e-20	90.9
MS.gene84329.t1	MTR_6g026800	31.022	274	129	7	19	237	25	293	2.61e-17	80.5
MS.gene84329.t1	MTR_5g088230	31.081	222	135	5	17	237	37	241	4.14e-17	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84329.t1	AT3G44460	41.958	286	119	10	18	265	43	319	1.50e-47	161
MS.gene84329.t1	AT3G56850	34.615	260	116	11	18	237	24	269	4.44e-28	109
MS.gene84329.t1	AT2G36270	56.436	101	43	1	151	250	312	412	1.56e-27	110
MS.gene84329.t1	AT2G36270	55.340	103	45	1	151	252	312	414	2.38e-27	110
MS.gene84329.t1	AT2G36270	31.638	177	57	6	18	132	45	219	3.37e-14	72.4
MS.gene84329.t1	AT2G36270	55.340	103	45	1	151	252	312	414	2.38e-27	110
MS.gene84329.t1	AT2G36270	31.638	177	57	6	18	132	45	219	3.37e-14	72.4
MS.gene84329.t1	AT2G41070	32.287	223	116	4	25	238	39	235	3.23e-25	100
MS.gene84329.t1	AT2G41070	32.287	223	116	4	25	238	39	235	5.26e-25	100
MS.gene84329.t1	AT2G41070	32.287	223	116	4	25	238	39	235	5.26e-25	100

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Find 45 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCTTGAAATCATCTA+GGG	0.543413	2.2:+12173685	None:intergenic
AATCAAGCTCAAGCACAACC+TGG	0.585556	2.2:-12172396	MS.gene84329:CDS
AATCAGCAAAGGTTCAAAAG+GGG	0.678708	2.2:-12172426	MS.gene84329:CDS
ACAAGTGGAGCTGAGTCAAG+TGG	0.615825	2.2:-12173236	MS.gene84329:CDS
ACCAGAAAGAGGATAATTGA+TGG	0.532983	2.2:-12173206	MS.gene84329:CDS
ACCATCAATTATCCTCTTTC+TGG	0.164582	2.2:+12173205	None:intergenic
ACGTTCTCGAGCAAGACGTC+AGG	0.524988	2.2:-12173120	MS.gene84329:intron
ACTCAGCTCCACTTGTCATT+TGG	0.334133	2.2:+12173243	None:intergenic
AGAAAACTTCGGATGAAGTT+TGG	0.353717	2.2:-12173505	MS.gene84329:CDS
AGACTGAATCACCAAGTTGT+TGG	0.471123	2.2:+12173549	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGTTCTTGAAATCATCT+AGG	+	chr2.2:12172455-12172474	None:intergenic	30.0%
TAAAATCGTGTTTACCTTTG+CGG	-	chr2.2:12173128-12173147	MS.gene84329:CDS	30.0%
TCTACAACAATTAGATCAAG+AGG	-	chr2.2:12172398-12172417	MS.gene84329:CDS	30.0%
TTTCTTCTTTGAATTGTGGT+TGG	+	chr2.2:12172674-12172693	None:intergenic	30.0%
AAATCCAACACAAATGTGAC+AGG	-	chr2.2:12173178-12173197	MS.gene84329:CDS	35.0%
AATCAGCAAAGGTTCAAAAG+GGG	-	chr2.2:12173710-12173729	MS.gene84329:CDS	35.0%
ACCAGAAAGAGGATAATTGA+TGG	-	chr2.2:12172930-12172949	MS.gene84329:intron	35.0%
ACCATCAATTATCCTCTTTC+TGG	+	chr2.2:12172934-12172953	None:intergenic	35.0%
AGAAAACTTCGGATGAAGTT+TGG	-	chr2.2:12172631-12172650	MS.gene84329:intron	35.0%
CAATCAGCAAAGGTTCAAAA+GGG	-	chr2.2:12173709-12173728	MS.gene84329:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	12172393	12173765	12172393	ID=MS.gene84329
chr2.2	mRNA	12172393	12173765	12172393	ID=MS.gene84329.t1;Parent=MS.gene84329
chr2.2	exon	12173121	12173765	12173121	ID=MS.gene84329.t1.exon1;Parent=MS.gene84329.t1
chr2.2	CDS	12173121	12173765	12173121	ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1
chr2.2	exon	12172680	12172751	12172680	ID=MS.gene84329.t1.exon2;Parent=MS.gene84329.t1
chr2.2	CDS	12172680	12172751	12172680	ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1
chr2.2	exon	12172550	12172579	12172550	ID=MS.gene84329.t1.exon3;Parent=MS.gene84329.t1
chr2.2	CDS	12172550	12172579	12172550	ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1
chr2.2	exon	12172393	12172464	12172393	ID=MS.gene84329.t1.exon4;Parent=MS.gene84329.t1
chr2.2	CDS	12172393	12172464	12172393	ID=cds.MS.gene84329.t1;Parent=MS.gene84329.t1

Gene Sequence

>MS.gene84329

ATGGCTCTACAACAATTAGATCAAGAGGATTCTTATCCGAGCAATCAAAACGCACTTACCCTAGATGATTTCAAGAACTTTGACTCCCTCAACATGGATGAGTTCCTAGCCAGTATTTGGAGTTCCAGTGATGAAGCTACTACACAAACTCACAACAATATTGAAAGTGTTGTAACAACAGAACACACCAGTTCCCAACAACTTGGTGATTCAGTCTCTGTCCCTCCTCTAGTTTGCAAGAAAACTTCGGATGAAGTTTGGTCCGAGATTCATAAAAACCAACCACAATTCAAAGAAGAAAATAACCTTAAAAGAAATGAGACACTCAAGAAGCAAGAAACACCTGGAGAAATGACTTTTGAGGATTTCTTGGTAAAAGCTGGAGTAGTACAACAATCATCATCATTGTCGTTTCAGAATCATAGTGGCAATGTTTCAAATAACATGAGACCACTGAATATTGCAAGTTCTGGTTTGACTAGCAATAGTCCTGCAACATACCAAATGACAAGTGGAGCTGAGTCAAGTGGAGCTGCTACCAGAAAGAGGATAATTGATGGTCCCCCTGAAGTTCTATTGGAGCGAAAACAACGCAGAATGATGAAAAATCGAGAATCGGCTGCACGTTCTCGAGCAAGACGTCAGGTTTTGTGCTCATCATACTCTACTCTTTGTTATAGCTCAATTGTTATACTTATTAATCACATAACTTGGAGAGTGCATCTGTGTAAGGTTTAAAATCGTGTTTACCTTTGCGGTCGCTTCACAATCCTTGATTTCGCGATAAATCCAACACAAATGTGACAGGTTCAGCCTCAATCACGGTCACAGACTTTTTTAAAACTTGTTTTTGTGTGATTAACACTACATTCAAGATTTTAAATAACAGTCTGTGGCCGTGATTTAGGCTGTGACATAAGGACTTTTTATGTCTCTGAAATTAAAGTTGGGACGGCAGCATTTTACCGTGATAGTCCGTAACGTTTGCATATAAAAAAAAATCTTGCAATGCAGGCTTATACAATAGAGCTAGAGGCTGAGCTGAATCTGCTACAAGAAGAGAATAAAATGCTGAAACAATTTCTGGTAAACAATACTGAAACTGAATATACGGTTCTTTTTTTCTTTTCTTGATGATTTATGTTTTCTGATGCTTAACATGTATATCTATTTAAATCTGAAATAGGCTGAAGCTGAGAACAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTTTCAAATATAAGTTGATATTTATACATCATTGTGAATGTGTGTTTATGATTATGTATTGCTACAGCTTTTGCAAAGAAAGCAATCAGCAAAGGTTCAAAAGGGGACAGAAAAATCAAGCTCAAGCACAACCTGGTGA

Protein sequence

>MS.gene84329.t1

MALQQLDQEDSYPSNQNALTLDDFKNFDSLNMDEFLASIWSSSDEATTQTHNNIESVVTTEHTSSQQLGDSVSVPPLVCKKTSDEVWSEIHKNQPQFKEENNLKRNETLKKQETPGEMTFEDFLVKAGVVQQSSSLSFQNHSGNVSNNMRPLNIASSGLTSNSPATYQMTSGAESSGAATRKRIIDGPPEVLLERKQRRMMKNRESAARSRARRQAYTIELEAELNLLQEENKMLKQFLAEAENKRKQELLQRKQSAKVQKGTEKSSSSTTW