AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84330.t1 MTR_2g086340 93.231 325 21 1 1 325 1 324 0.0 603
MS.gene84330.t1 MTR_2g086390 66.871 326 69 5 1 325 1 288 4.75e-148 418
MS.gene84330.t1 MTR_2g086390 67.128 289 61 4 1 288 1 256 6.74e-132 377
MS.gene84330.t1 MTR_3g010660 35.473 296 143 13 20 285 17 294 5.77e-35 129
MS.gene84330.t1 MTR_8g043960 36.268 284 134 10 25 285 26 285 6.19e-35 129
MS.gene84330.t1 MTR_7g088090 35.855 304 148 12 12 286 8 293 1.16e-34 129
MS.gene84330.t1 MTR_7g104480 47.761 134 57 4 29 149 45 178 2.66e-29 116
MS.gene84330.t1 MTR_7g104480 50.685 146 54 4 180 322 298 428 2.15e-25 105
MS.gene84330.t1 MTR_6g026800 36.120 299 132 11 24 285 17 293 7.06e-27 108
MS.gene84330.t1 MTR_3g101780 42.748 131 60 6 24 151 28 146 1.09e-19 89.4
MS.gene84330.t1 MTR_3g101780 47.525 101 41 3 229 325 339 431 2.02e-16 80.1
MS.gene84330.t1 MTR_4g085910 49.451 91 36 2 236 325 295 376 1.53e-15 77.0
MS.gene84330.t1 MTR_4g085910 34.559 136 69 4 24 151 19 142 1.02e-14 74.7
MS.gene84330.t1 MTR_7g015990 63.830 47 14 1 242 285 120 166 5.18e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84330.t1 AT3G44460 44.444 333 154 9 7 325 16 331 1.55e-69 220
MS.gene84330.t1 AT2G36270 35.561 419 138 13 20 320 34 438 6.67e-56 188
MS.gene84330.t1 AT2G36270 35.561 419 138 13 20 320 34 438 6.67e-56 188
MS.gene84330.t1 AT2G36270 35.623 393 125 11 20 298 34 412 9.32e-55 185
MS.gene84330.t1 AT3G56850 41.219 279 119 13 25 285 18 269 3.87e-41 145
MS.gene84330.t1 AT2G41070 34.962 266 123 8 24 286 17 235 7.85e-36 130
MS.gene84330.t1 AT2G41070 35.424 271 124 9 24 291 17 239 1.49e-35 130
MS.gene84330.t1 AT2G41070 35.424 271 124 9 24 291 17 239 1.49e-35 130
MS.gene84330.t1 AT2G41070 35.424 271 124 9 24 291 17 239 1.49e-35 130
MS.gene84330.t1 AT2G41070 35.424 271 124 9 24 291 26 248 1.50e-35 130
MS.gene84330.t1 AT1G49720 33.831 201 109 8 21 210 20 207 7.52e-20 89.7
MS.gene84330.t1 AT1G49720 52.273 88 39 1 238 325 308 392 1.08e-15 77.8
MS.gene84330.t1 AT1G49720 33.831 201 109 8 21 210 20 207 7.52e-20 89.7
MS.gene84330.t1 AT1G49720 52.273 88 39 1 238 325 308 392 1.08e-15 77.8
MS.gene84330.t1 AT1G49720 39.568 139 69 5 21 149 20 153 8.32e-20 89.7
MS.gene84330.t1 AT1G49720 62.903 62 23 0 238 299 308 369 9.26e-15 74.7
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.17e-19 89.4
MS.gene84330.t1 AT1G45249 51.456 103 41 4 224 325 337 431 9.93e-16 77.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 37 189 1.17e-19 89.4
MS.gene84330.t1 AT1G45249 51.456 103 41 4 224 325 337 431 9.93e-16 77.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 1.32e-19 89.4
MS.gene84330.t1 AT1G45249 51.456 103 41 4 224 325 322 416 8.40e-16 78.2
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.02e-19 88.6
MS.gene84330.t1 AT1G45249 46.491 114 41 5 224 325 322 427 5.87e-13 69.7
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.94e-19 87.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 2.94e-19 87.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.66e-19 87.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.66e-19 87.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.66e-19 87.8
MS.gene84330.t1 AT1G45249 35.294 153 88 2 24 165 22 174 3.66e-19 87.8
MS.gene84330.t1 AT4G34000 31.532 222 96 6 24 201 28 237 7.97e-18 84.3
MS.gene84330.t1 AT4G34000 70.833 48 14 0 238 285 369 416 4.64e-14 73.2
MS.gene84330.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.17e-18 84.0
MS.gene84330.t1 AT4G34000 48.864 88 43 1 238 325 369 454 8.53e-16 78.2
MS.gene84330.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.17e-18 84.0
MS.gene84330.t1 AT4G34000 48.864 88 43 1 238 325 369 454 8.53e-16 78.2
MS.gene84330.t1 AT4G34000 31.532 222 96 6 24 201 28 237 9.17e-18 84.0
MS.gene84330.t1 AT4G34000 48.864 88 43 1 238 325 369 454 8.53e-16 78.2
MS.gene84330.t1 AT3G19290 48.598 107 51 2 219 325 329 431 1.09e-17 83.6
MS.gene84330.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.48e-16 80.5
MS.gene84330.t1 AT3G19290 48.598 107 51 2 219 325 329 431 1.09e-17 83.6
MS.gene84330.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.48e-16 80.5
MS.gene84330.t1 AT3G19290 42.754 138 64 4 194 325 304 432 1.87e-17 83.2
MS.gene84330.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.59e-16 80.1
MS.gene84330.t1 AT5G44080 30.000 230 125 6 98 325 120 315 7.01e-17 80.5
MS.gene84330.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.28e-16 80.5
MS.gene84330.t1 AT3G19290 55.556 81 36 0 219 299 329 409 2.03e-16 79.7
MS.gene84330.t1 AT3G19290 37.063 143 77 4 24 153 35 177 1.60e-16 80.1
MS.gene84330.t1 AT2G17770 31.579 209 116 8 100 301 1 189 4.84e-14 70.1
MS.gene84330.t1 AT5G42910 38.095 126 55 5 24 146 21 126 1.30e-12 68.2
MS.gene84330.t1 AT1G03970 26.190 210 100 4 98 300 85 246 4.28e-12 65.9

Find 63 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2.2:+12177058 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2.2:-12178097 MS.gene84330:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2.2:-12178300 MS.gene84330:CDS
TTGAATATTACAAGTTGTTA+TGG 0.323588 2.2:-12178061 MS.gene84330:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2.2:-12177901 MS.gene84330:CDS
TCAAAAGCTAAAACAAGTTC+TGG 0.355048 2.2:-12177406 MS.gene84330:intron
TGTTATCGTGTGACAACATT+TGG 0.357080 2.2:+12177972 None:intergenic
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2.2:+12177045 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2.2:-12178176 MS.gene84330:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2.2:-12177110 MS.gene84330:CDS
CTTCGCTCCACTACAACTTC+AGG 0.394469 2.2:+12177857 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2.2:+12177248 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2.2:+12178320 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.419253 2.2:-12178007 MS.gene84330:CDS
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2.2:+12178455 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2.2:-12178154 MS.gene84330:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2.2:-12178451 MS.gene84330:CDS
TTACAAGTTGTTATGGTTTG+AGG 0.426385 2.2:-12178054 MS.gene84330:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2.2:-12178414 MS.gene84330:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2.2:+12178321 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2.2:+12178467 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2.2:-12178109 MS.gene84330:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2.2:+12178106 None:intergenic
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2.2:-12178044 MS.gene84330:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2.2:+12178031 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2.2:-12178276 MS.gene84330:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2.2:-12178037 MS.gene84330:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2.2:-12178190 MS.gene84330:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2.2:+12178232 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.481051 2.2:-12178331 MS.gene84330:CDS
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2.2:+12178535 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2.2:-12178038 MS.gene84330:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2.2:+12178327 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2.2:+12178236 None:intergenic
AATAGGAAGAGGATAATTGA+TGG 0.515045 2.2:-12177884 MS.gene84330:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2.2:+12178402 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2.2:-12177895 MS.gene84330:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2.2:-12178173 MS.gene84330:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2.2:+12178426 None:intergenic
TAACAACTTGTAATATTCAA+TGG 0.527054 2.2:+12178064 None:intergenic
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2.2:+12178567 None:intergenic
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2.2:-12178043 MS.gene84330:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2.2:-12177798 MS.gene84330:intron
TTGTCACACGATAACAACTT+AGG 0.557886 2.2:-12177965 MS.gene84330:CDS
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2.2:-12178437 MS.gene84330:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2.2:-12177109 MS.gene84330:CDS
GGCATATACATTAGAGCTAG+AGG 0.565644 2.2:-12177457 MS.gene84330:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2.2:+12178425 None:intergenic
TAGAACTCCATATGCTGGCA+AGG 0.571014 2.2:+12178407 None:intergenic
CGATAACAACTTAGGAGTGA+AGG 0.579367 2.2:-12177957 MS.gene84330:CDS
TGGTCCTCCTGAAGTTGTAG+TGG 0.592007 2.2:-12177864 MS.gene84330:CDS
TCTACAACAATTAGATCAAG+AGG 0.593387 2.2:-12178560 MS.gene84330:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2.2:-12178287 MS.gene84330:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2.2:-12177119 MS.gene84330:CDS
CTGAAGTTGTAGTGGAGCGA+AGG 0.600061 2.2:-12177856 MS.gene84330:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2.2:-12178463 MS.gene84330:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2.2:+12178468 None:intergenic
CGCTCCACTACAACTTCAGG+AGG 0.642123 2.2:+12177860 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2.2:-12177263 MS.gene84330:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2.2:-12177253 MS.gene84330:intron
GAAGGCCTATAAGCACAACC+TGG 0.668432 2.2:-12177063 MS.gene84330:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2.2:-12177914 MS.gene84330:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2.2:-12177913 MS.gene84330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATTTAAATATGAAAT+AGG - chr2.2:12178342-12178361 MS.gene84330:CDS 10.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2.2:12178423-12178442 MS.gene84330:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2.2:12178424-12178443 MS.gene84330:CDS 15.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2.2:12178145-12178164 None:intergenic 15.0%
!! TAACAACTTGTAATATTCAA+TGG + chr2.2:12177564-12177583 None:intergenic 20.0%
!! TTGAATATTACAAGTTGTTA+TGG - chr2.2:12177564-12177583 MS.gene84330:intron 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2.2:12177999-12178018 None:intergenic 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2.2:12177396-12177415 None:intergenic 20.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2.2:12178147-12178166 MS.gene84330:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2.2:12178544-12178563 MS.gene84330:CDS 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2.2:12177800-12177819 MS.gene84330:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2.2:12177935-12177954 MS.gene84330:CDS 25.0%
!! CTTTGTTATAGTTCTATGTT+AGG - chr2.2:12177874-12177893 MS.gene84330:CDS 25.0%
!!! TTCTTGTTTTTGTTTCTTCA+TGG - chr2.2:12178292-12178311 MS.gene84330:CDS 25.0%
AATAGGAAGAGGATAATTGA+TGG - chr2.2:12177741-12177760 MS.gene84330:intron 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2.2:12177528-12177547 MS.gene84330:intron 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2.2:12177308-12177327 None:intergenic 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2.2:12177872-12177891 None:intergenic 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2.2:12177307-12177326 None:intergenic 30.0%
TAATGTGAATCACAAAATGC+AGG + chr2.2:12178012-12178031 None:intergenic 30.0%
TCAAAAGCTAAAACAAGTTC+TGG - chr2.2:12178219-12178238 MS.gene84330:CDS 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2.2:12177065-12177084 MS.gene84330:CDS 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2.2:12177269-12177288 MS.gene84330:intron 30.0%
TTACAAGTTGTTATGGTTTG+AGG - chr2.2:12177571-12177590 MS.gene84330:intron 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2.2:12177522-12177541 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2.2:12177516-12177535 MS.gene84330:intron 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2.2:12177392-12177411 None:intergenic 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2.2:12177129-12177148 None:intergenic 30.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2.2:12177712-12177731 MS.gene84330:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2.2:12177449-12177468 MS.gene84330:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2.2:12177202-12177221 None:intergenic 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2.2:12177724-12177743 MS.gene84330:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2.2:12177618-12177637 MS.gene84330:intron 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2.2:12177349-12177368 MS.gene84330:intron 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2.2:12178119-12178138 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2.2:12177301-12177320 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2.2:12178516-12178535 MS.gene84330:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2.2:12177471-12177490 MS.gene84330:intron 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2.2:12177338-12177357 MS.gene84330:intron 35.0%
TGTGATTCACATTAAGCTCA+AGG - chr2.2:12178018-12178037 MS.gene84330:CDS 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2.2:12178064-12178083 None:intergenic 35.0%
TGTTATCGTGTGACAACATT+TGG + chr2.2:12177656-12177675 None:intergenic 35.0%
TTGTCACACGATAACAACTT+AGG - chr2.2:12177660-12177679 MS.gene84330:intron 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2.2:12177339-12177358 None:intergenic 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2.2:12177342-12177361 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2.2:12177335-12177354 None:intergenic 35.0%
AAATTATGGTCGAATGCGAC+AGG - chr2.2:12177949-12177968 MS.gene84330:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2.2:12177452-12177471 MS.gene84330:CDS 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2.2:12178099-12178118 MS.gene84330:CDS 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2.2:12177211-12177230 MS.gene84330:intron 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2.2:12177711-12177730 MS.gene84330:intron 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2.2:12177203-12177222 None:intergenic 40.0%
CGATAACAACTTAGGAGTGA+AGG - chr2.2:12177668-12177687 MS.gene84330:intron 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2.2:12177435-12177454 MS.gene84330:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2.2:12177160-12177179 None:intergenic 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2.2:12177597-12177616 None:intergenic 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2.2:12178515-12178534 MS.gene84330:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2.2:12178168-12178187 MS.gene84330:CDS 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2.2:12178098-12178117 None:intergenic 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2.2:12177226-12177245 None:intergenic 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2.2:12178050-12178069 MS.gene84330:CDS 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2.2:12177161-12177180 None:intergenic 40.0%
TTGTACCAGACATGATATGG+CGG + chr2.2:12178095-12178114 None:intergenic 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2.2:12178380-12178399 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2.2:12177336-12177355 None:intergenic 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2.2:12177582-12177601 MS.gene84330:intron 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2.2:12177419-12177438 None:intergenic 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2.2:12177581-12177600 MS.gene84330:intron 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2.2:12178506-12178525 MS.gene84330:CDS 40.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2.2:12177173-12177192 None:intergenic 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2.2:12178079-12178098 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2.2:12177162-12177181 MS.gene84330:intron 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2.2:12177093-12177112 None:intergenic 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2.2:12177730-12177749 MS.gene84330:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2.2:12177221-12177240 None:intergenic 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2.2:12178372-12178391 MS.gene84330:CDS 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2.2:12177174-12177193 MS.gene84330:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2.2:12177588-12177607 MS.gene84330:intron 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2.2:12178087-12178106 MS.gene84330:CDS 45.0%
! AGGAGTGAAGGATTTTGCTG+TGG - chr2.2:12177680-12177699 MS.gene84330:intron 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2.2:12177587-12177606 MS.gene84330:intron 45.0%
CACACCGTTTCCCAACAACT+TGG - chr2.2:12177294-12177313 MS.gene84330:intron 50.0%
CTTCGCTCCACTACAACTTC+AGG + chr2.2:12177771-12177790 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2.2:12178562-12178581 MS.gene84330:CDS 50.0%
GAATTGTGAAGCGACAGCGA+AGG + chr2.2:12177916-12177935 None:intergenic 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2.2:12177827-12177846 MS.gene84330:CDS 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2.2:12177325-12177344 MS.gene84330:intron 50.0%
TGGTCCTCCTGAAGTTGTAG+TGG - chr2.2:12177761-12177780 MS.gene84330:intron 50.0%
! CTGAAGTTGTAGTGGAGCGA+AGG - chr2.2:12177769-12177788 MS.gene84330:intron 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2.2:12177188-12177207 MS.gene84330:intron 50.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2.2:12177980-12177999 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2.2:12178362-12178381 MS.gene84330:CDS 55.0%
CGCTCCACTACAACTTCAGG+AGG + chr2.2:12177768-12177787 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2.2:12177966-12177985 MS.gene84330:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 12177060 12178587 12177060 ID=MS.gene84330
chr2.2 mRNA 12177060 12178587 12177060 ID=MS.gene84330.t1;Parent=MS.gene84330
chr2.2 exon 12177799 12178587 12177799 ID=MS.gene84330.t1.exon1;Parent=MS.gene84330.t1
chr2.2 CDS 12177799 12178587 12177799 ID=cds.MS.gene84330.t1;Parent=MS.gene84330.t1
chr2.2 exon 12177407 12177478 12177407 ID=MS.gene84330.t1.exon2;Parent=MS.gene84330.t1
chr2.2 CDS 12177407 12177478 12177407 ID=cds.MS.gene84330.t1;Parent=MS.gene84330.t1
chr2.2 exon 12177254 12177283 12177254 ID=MS.gene84330.t1.exon3;Parent=MS.gene84330.t1
chr2.2 CDS 12177254 12177283 12177254 ID=cds.MS.gene84330.t1;Parent=MS.gene84330.t1
chr2.2 exon 12177060 12177146 12177060 ID=MS.gene84330.t1.exon4;Parent=MS.gene84330.t1
chr2.2 CDS 12177060 12177146 12177060 ID=cds.MS.gene84330.t1;Parent=MS.gene84330.t1
Gene Sequence

>MS.gene84330

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTACAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTTTTGCAACATACCAAATGTTGTCACACGATAACAACTTAGGAGTGAAGGATTTTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGTTTTTGTGTTCATCATACTCCACTCTTTGTTATAGTTCTATGTTAGGTTTAAAGTTGCAGTTACCTTCGCTGTCGCTTCACAATTCTTGATTTCGCAATAAATTATGGTCGAATGCGACAGGTTCAGCCTCGATCACGGTCACAGACCTTTTTTTAAAACCTGCATTTTGTGATTCACATTAAGCTCAAGGTTTTAAATATACGTCTGTGACCACAATTTAGGTTGCCTTAACAGCATTTGACCGCCATATCATGTCTGGTACAAACCTTGGTAACTAGTTGCTAACATTTGCCTATAAAAAAATATCTTGCAATGCAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATCAAAAGCTAAAACAAGTTCTGGTAAACAATACTGAAATTCAATATTCTGTTCTTTTTTTCTTTCTTTCTTATTTCTTGTTTTTGTTTCTTCATGGTATATGTCTTCTGATGCTTAACATATATTTCTATTTAAATATGAAATAGGCTGAAGCTGAGACCAAGAGGAAACAAGAGGTAAGTGATTGATTATATGTATCAAATATAAGTTGATATTTATATAACAAGGGCTAATATTACTAACATCATTGTGAATGTTTGTTTATTATTATATATTGCTACAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCTCAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA
Protein sequence

>MS.gene84330.t1

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNITSCYGLRPSMGMGFSTQCVSRNGFATYQMLSHDNNLGVKDFAVEKCQSLTESSGCSNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENQKLKQVLAEAETKRKQELLQRKHSTKAQKGAQKLRAMRRPISTTW