Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84434.t1 | AES79083.2 | 87.6 | 732 | 87 | 2 | 1 | 728 | 1 | 732 | 0.00E+00 | 1213.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84434.t1 | Q9ZSM8 | 38.6 | 834 | 369 | 18 | 27 | 728 | 32 | 854 | 8.0e-145 | 515.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84434.t1 | G7L054 | 87.6 | 732 | 87 | 2 | 1 | 728 | 1 | 732 | 0.0e+00 | 1213.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84434.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84434.t1 | MTR_7g055660 | 91.803 | 732 | 56 | 2 | 1 | 728 | 1 | 732 | 0.0 | 1389 |
| MS.gene84434.t1 | MTR_7g109560 | 50.685 | 730 | 315 | 15 | 12 | 726 | 61 | 760 | 0.0 | 664 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 222 | 629 | 2.46e-152 | 457 |
| MS.gene84434.t1 | MTR_1g086980 | 48.734 | 158 | 75 | 2 | 191 | 342 | 1 | 158 | 2.62e-40 | 157 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 371 | 778 | 5.15e-151 | 459 |
| MS.gene84434.t1 | MTR_1g086980 | 44.156 | 308 | 160 | 6 | 45 | 342 | 2 | 307 | 1.33e-72 | 251 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 350 | 757 | 5.60e-151 | 458 |
| MS.gene84434.t1 | MTR_1g086980 | 43.403 | 288 | 151 | 6 | 65 | 342 | 1 | 286 | 6.07e-65 | 230 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 422 | 829 | 8.11e-151 | 459 |
| MS.gene84434.t1 | MTR_1g086980 | 43.582 | 335 | 177 | 6 | 18 | 342 | 26 | 358 | 6.89e-79 | 270 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 402 | 809 | 1.06e-150 | 459 |
| MS.gene84434.t1 | MTR_1g086980 | 43.582 | 335 | 177 | 6 | 18 | 342 | 6 | 338 | 6.02e-79 | 270 |
| MS.gene84434.t1 | MTR_1g086980 | 56.039 | 414 | 166 | 7 | 325 | 728 | 412 | 819 | 1.56e-150 | 459 |
| MS.gene84434.t1 | MTR_1g086980 | 43.529 | 340 | 180 | 6 | 13 | 342 | 11 | 348 | 3.47e-79 | 270 |
| MS.gene84434.t1 | MTR_5g016870 | 50.230 | 434 | 198 | 10 | 301 | 727 | 440 | 862 | 3.26e-129 | 404 |
| MS.gene84434.t1 | MTR_5g016870 | 30.696 | 316 | 194 | 6 | 12 | 302 | 23 | 338 | 1.27e-38 | 154 |
| MS.gene84434.t1 | MTR_1g086980 | 56.897 | 348 | 137 | 5 | 325 | 662 | 412 | 756 | 2.23e-128 | 399 |
| MS.gene84434.t1 | MTR_1g086980 | 43.529 | 340 | 180 | 6 | 13 | 342 | 11 | 348 | 1.15e-79 | 270 |
| MS.gene84434.t1 | MTR_1g086980 | 51.579 | 285 | 125 | 5 | 325 | 599 | 350 | 631 | 9.21e-87 | 286 |
| MS.gene84434.t1 | MTR_1g086980 | 43.403 | 288 | 151 | 6 | 65 | 342 | 1 | 286 | 4.80e-66 | 231 |
| MS.gene84434.t1 | MTR_1g086980 | 51.579 | 285 | 125 | 5 | 325 | 599 | 412 | 693 | 2.10e-86 | 287 |
| MS.gene84434.t1 | MTR_1g086980 | 43.529 | 340 | 180 | 6 | 13 | 342 | 11 | 348 | 2.72e-80 | 271 |
| MS.gene84434.t1 | MTR_1g086980 | 43.529 | 340 | 180 | 6 | 13 | 342 | 11 | 348 | 1.14e-80 | 270 |
| MS.gene84434.t1 | MTR_1g086980 | 52.968 | 219 | 91 | 4 | 341 | 549 | 428 | 644 | 6.64e-65 | 228 |
| MS.gene84434.t1 | MTR_2g036060 | 36.364 | 132 | 81 | 2 | 573 | 701 | 1027 | 1158 | 2.46e-20 | 97.1 |
| MS.gene84434.t1 | MTR_2g036060 | 36.364 | 132 | 81 | 2 | 573 | 701 | 1052 | 1183 | 2.55e-20 | 97.1 |
| MS.gene84434.t1 | MTR_1g098370 | 35.625 | 160 | 83 | 4 | 537 | 694 | 75 | 216 | 3.25e-19 | 92.0 |
| MS.gene84434.t1 | MTR_1g098000 | 35.625 | 160 | 83 | 4 | 537 | 694 | 72 | 213 | 5.31e-19 | 91.3 |
| MS.gene84434.t1 | MTR_1g008230 | 33.582 | 134 | 87 | 2 | 567 | 698 | 603 | 736 | 2.36e-17 | 87.0 |
| MS.gene84434.t1 | MTR_1g008230 | 33.582 | 134 | 87 | 2 | 567 | 698 | 881 | 1014 | 4.98e-17 | 86.3 |
| MS.gene84434.t1 | MTR_0071s0100 | 32.800 | 125 | 80 | 2 | 575 | 696 | 207 | 330 | 3.47e-16 | 81.6 |
| MS.gene84434.t1 | MTR_3g091310 | 34.426 | 122 | 78 | 2 | 579 | 698 | 922 | 1043 | 4.70e-16 | 83.2 |
| MS.gene84434.t1 | MTR_3g091310 | 34.426 | 122 | 78 | 2 | 579 | 698 | 828 | 949 | 4.98e-16 | 82.8 |
| MS.gene84434.t1 | MTR_8g064240 | 46.053 | 76 | 40 | 1 | 641 | 716 | 1 | 75 | 9.56e-16 | 73.6 |
| MS.gene84434.t1 | MTR_7g117355 | 34.146 | 123 | 79 | 2 | 579 | 699 | 823 | 945 | 1.80e-15 | 81.3 |
| MS.gene84434.t1 | MTR_7g021365 | 34.711 | 121 | 76 | 1 | 577 | 694 | 904 | 1024 | 1.84e-15 | 81.3 |
| MS.gene84434.t1 | MTR_1g012910 | 32.540 | 126 | 79 | 1 | 575 | 694 | 360 | 485 | 2.52e-15 | 79.7 |
| MS.gene84434.t1 | MTR_1g012910 | 32.540 | 126 | 79 | 1 | 575 | 694 | 523 | 648 | 2.82e-15 | 80.1 |
| MS.gene84434.t1 | MTR_1g012890 | 30.952 | 126 | 81 | 1 | 575 | 694 | 220 | 345 | 1.36e-14 | 76.6 |
| MS.gene84434.t1 | MTR_8g027725 | 31.967 | 122 | 81 | 2 | 579 | 698 | 808 | 929 | 2.34e-14 | 77.4 |
| MS.gene84434.t1 | MTR_8g027725 | 31.967 | 122 | 81 | 2 | 579 | 698 | 793 | 914 | 2.38e-14 | 77.4 |
| MS.gene84434.t1 | MTR_8g064250 | 58.065 | 62 | 24 | 2 | 666 | 726 | 8 | 68 | 6.60e-14 | 68.9 |
| MS.gene84434.t1 | MTR_6g059310 | 32.231 | 121 | 80 | 2 | 578 | 696 | 112 | 232 | 1.06e-12 | 70.5 |
| MS.gene84434.t1 | MTR_6g059310 | 32.231 | 121 | 80 | 2 | 578 | 696 | 112 | 232 | 1.17e-12 | 70.5 |
| MS.gene84434.t1 | MTR_8g064320 | 54.839 | 62 | 26 | 2 | 666 | 726 | 10 | 70 | 1.20e-12 | 65.1 |
| MS.gene84434.t1 | MTR_5g013420 | 33.533 | 167 | 70 | 6 | 566 | 698 | 905 | 1064 | 1.16e-11 | 68.9 |
| MS.gene84434.t1 | MTR_4g010830 | 30.814 | 172 | 80 | 5 | 557 | 695 | 787 | 952 | 1.16e-11 | 68.9 |
| MS.gene84434.t1 | MTR_5g013420 | 33.533 | 167 | 70 | 6 | 566 | 698 | 905 | 1064 | 1.22e-11 | 68.9 |
| MS.gene84434.t1 | MTR_8g064310 | 52.830 | 53 | 24 | 1 | 664 | 716 | 6 | 57 | 3.37e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84434.t1 | AT4G02020 | 58.760 | 371 | 137 | 7 | 367 | 728 | 491 | 854 | 2.67e-142 | 438 |
| MS.gene84434.t1 | AT4G02020 | 40.636 | 283 | 163 | 5 | 29 | 308 | 34 | 314 | 5.33e-57 | 209 |
| MS.gene84434.t1 | AT2G23380 | 53.207 | 421 | 162 | 12 | 326 | 727 | 270 | 674 | 2.56e-130 | 402 |
| MS.gene84434.t1 | AT2G23380 | 47.253 | 91 | 43 | 4 | 217 | 305 | 7 | 94 | 3.98e-14 | 76.6 |
| MS.gene84434.t1 | AT2G23380 | 53.207 | 421 | 162 | 12 | 326 | 727 | 497 | 901 | 8.11e-129 | 404 |
| MS.gene84434.t1 | AT2G23380 | 35.390 | 308 | 178 | 9 | 12 | 305 | 21 | 321 | 4.63e-40 | 159 |
| MS.gene84434.t1 | AT1G02580 | 35.198 | 733 | 377 | 22 | 22 | 715 | 8 | 681 | 4.47e-122 | 380 |
| MS.gene84434.t1 | AT4G02020 | 58.730 | 315 | 117 | 5 | 367 | 672 | 491 | 801 | 5.56e-120 | 379 |
| MS.gene84434.t1 | AT4G02020 | 40.636 | 283 | 163 | 5 | 29 | 308 | 34 | 314 | 3.28e-57 | 209 |
| MS.gene84434.t1 | AT4G02020 | 58.719 | 281 | 103 | 5 | 367 | 638 | 491 | 767 | 7.02e-104 | 336 |
| MS.gene84434.t1 | AT4G02020 | 40.636 | 283 | 163 | 5 | 29 | 308 | 34 | 314 | 3.10e-57 | 209 |
| MS.gene84434.t1 | AT4G02020 | 58.719 | 281 | 103 | 5 | 367 | 638 | 491 | 767 | 7.02e-104 | 336 |
| MS.gene84434.t1 | AT4G02020 | 40.636 | 283 | 163 | 5 | 29 | 308 | 34 | 314 | 3.10e-57 | 209 |
| MS.gene84434.t1 | AT1G02580 | 32.310 | 619 | 319 | 22 | 22 | 599 | 8 | 567 | 8.19e-79 | 264 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT5G42400 | 35.606 | 132 | 82 | 2 | 573 | 701 | 1244 | 1375 | 3.30e-19 | 93.6 |
| MS.gene84434.t1 | AT1G76710 | 34.286 | 175 | 94 | 5 | 522 | 694 | 52 | 207 | 2.74e-18 | 89.4 |
| MS.gene84434.t1 | AT1G76710 | 34.286 | 175 | 94 | 5 | 522 | 694 | 52 | 207 | 2.76e-18 | 89.4 |
| MS.gene84434.t1 | AT1G76710 | 34.286 | 175 | 94 | 5 | 522 | 694 | 52 | 207 | 3.12e-18 | 89.0 |
| MS.gene84434.t1 | AT1G76710 | 34.286 | 175 | 94 | 5 | 522 | 694 | 52 | 207 | 3.12e-18 | 89.0 |
| MS.gene84434.t1 | AT4G30860 | 34.127 | 126 | 77 | 2 | 575 | 696 | 323 | 446 | 6.28e-18 | 88.2 |
| MS.gene84434.t1 | AT2G31650 | 37.190 | 121 | 73 | 1 | 577 | 694 | 897 | 1017 | 8.26e-17 | 85.5 |
| MS.gene84434.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 577 | 694 | 918 | 1038 | 4.68e-16 | 83.2 |
| MS.gene84434.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 577 | 694 | 918 | 1038 | 4.68e-16 | 83.2 |
| MS.gene84434.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 577 | 694 | 918 | 1038 | 4.68e-16 | 83.2 |
| MS.gene84434.t1 | AT1G05830 | 36.364 | 121 | 74 | 1 | 577 | 694 | 918 | 1038 | 4.68e-16 | 83.2 |
| MS.gene84434.t1 | AT5G53430 | 32.836 | 134 | 88 | 2 | 567 | 698 | 890 | 1023 | 5.05e-16 | 83.2 |
| MS.gene84434.t1 | AT4G27910 | 32.090 | 134 | 89 | 2 | 567 | 698 | 874 | 1007 | 1.44e-15 | 81.6 |
| MS.gene84434.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 578 | 696 | 111 | 231 | 1.03e-14 | 75.9 |
| MS.gene84434.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 578 | 696 | 111 | 231 | 1.03e-14 | 75.9 |
| MS.gene84434.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 578 | 696 | 111 | 231 | 1.03e-14 | 75.9 |
| MS.gene84434.t1 | AT3G59960 | 33.884 | 121 | 78 | 2 | 578 | 696 | 111 | 231 | 1.48e-14 | 75.9 |
| MS.gene84434.t1 | AT3G61740 | 33.613 | 119 | 76 | 2 | 579 | 694 | 840 | 958 | 9.02e-14 | 75.9 |
| MS.gene84434.t1 | AT3G61740 | 33.613 | 119 | 76 | 2 | 579 | 694 | 876 | 994 | 1.13e-13 | 75.5 |
| MS.gene84434.t1 | AT2G44150 | 32.258 | 124 | 82 | 2 | 575 | 696 | 113 | 236 | 7.46e-13 | 71.2 |
| MS.gene84434.t1 | AT1G77300 | 32.877 | 146 | 88 | 5 | 555 | 695 | 1005 | 1145 | 1.80e-12 | 71.6 |
| MS.gene84434.t1 | AT1G77300 | 36.364 | 110 | 66 | 2 | 589 | 695 | 1037 | 1145 | 2.21e-12 | 71.6 |
Find 129 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTTCTGGTTGCCAAAT+TGG | 0.150159 | 7.4:-49115493 | None:intergenic |
| GAATGTTCTTGTCTTCTTAA+AGG | 0.159465 | 7.4:+49118561 | MS.gene84434:CDS |
| CTCCTTACAGAATATATTAA+TGG | 0.172721 | 7.4:-49114480 | None:intergenic |
| TGAAAATATGAATCTTCTTT+TGG | 0.177238 | 7.4:+49119666 | MS.gene84434:CDS |
| GGAGAAAGATATATGTTTAA+AGG | 0.212479 | 7.4:+49116380 | MS.gene84434:CDS |
| AATGCGTTCCTTAGCAAATA+TGG | 0.253069 | 7.4:-49121259 | None:intergenic |
| GTATTATTTAAGCATACTTC+TGG | 0.256881 | 7.4:+49111143 | MS.gene84434:CDS |
| CTGTTTCCATCCGCTCCTTT+TGG | 0.259909 | 7.4:-49110489 | None:intergenic |
| TTTCTATGATTACAATTATA+CGG | 0.269536 | 7.4:+49121299 | MS.gene84434:CDS |
| CATACTTCCCTCTCACCTTC+TGG | 0.281824 | 7.4:-49115505 | None:intergenic |
| AGGATGACATTTGAAGAATA+TGG | 0.282881 | 7.4:+49111721 | MS.gene84434:intron |
| AATGGATCTATAGATGAAAA+TGG | 0.289635 | 7.4:+49117713 | MS.gene84434:CDS |
| AGAGAAAATGCATCTAATTC+TGG | 0.297548 | 7.4:+49112278 | MS.gene84434:CDS |
| CAAAGGTTTCCCACAAGGTT+TGG | 0.300398 | 7.4:+49111091 | MS.gene84434:CDS |
| TGGATGGGGAGCCTTCTTAA+AGG | 0.310146 | 7.4:+49119819 | MS.gene84434:CDS |
| TCATCAGAAGGTTCAACTTC+AGG | 0.314585 | 7.4:+49116195 | MS.gene84434:CDS |
| CATCATGGATACACTTGTTT+AGG | 0.321050 | 7.4:+49111198 | MS.gene84434:CDS |
| AGGTGTATAGTGAGGCTTAT+AGG | 0.324414 | 7.4:-49118508 | None:intergenic |
| CCTTATCATCCACGTCAAAA+AGG | 0.325525 | 7.4:-49120098 | None:intergenic |
| AACTACCTGTGGATAACAAT+TGG | 0.328568 | 7.4:-49120693 | None:intergenic |
| ATGGTGAAGACGAACTTCTT+TGG | 0.333553 | 7.4:+49111455 | MS.gene84434:CDS |
| AGTGATTTCCTTTGAATTAG+AGG | 0.339236 | 7.4:-49116274 | None:intergenic |
| CTACCTCTCTTGGAGCTTGA+TGG | 0.343291 | 7.4:-49118393 | None:intergenic |
| GAGAAAGATATATGTTTAAA+GGG | 0.348869 | 7.4:+49116381 | MS.gene84434:CDS |
| AGAGGGAAAAGCAACCAATT+TGG | 0.356361 | 7.4:+49115479 | MS.gene84434:intron |
| AAAGGTTTCCCACAAGGTTT+GGG | 0.358435 | 7.4:+49111092 | MS.gene84434:CDS |
| AATATTGTTCGAAGCTATAT+TGG | 0.363346 | 7.4:+49111763 | MS.gene84434:CDS |
| AGATATAACTCATCAACAAC+TGG | 0.365862 | 7.4:+49111014 | MS.gene84434:CDS |
| CAACAATCTTTACACACATC+TGG | 0.368941 | 7.4:-49118834 | None:intergenic |
| TTAAAGGGAATAGAGATGTT+TGG | 0.368970 | 7.4:+49116396 | MS.gene84434:CDS |
| GGAGAATGTAGAAGAGATAT+TGG | 0.383859 | 7.4:+49116248 | MS.gene84434:CDS |
| TGGAGATCATTGTTACCTTA+AGG | 0.384564 | 7.4:+49115528 | MS.gene84434:CDS |
| ATATGTCGGAACTTACTTGC+TGG | 0.385879 | 7.4:+49117641 | MS.gene84434:CDS |
| GTATAGGGTATGTTTGTTGC+TGG | 0.388339 | 7.4:+49121222 | MS.gene84434:intron |
| ATTGTTTGAATTTCATTATC+CGG | 0.389689 | 7.4:-49116225 | None:intergenic |
| AAACCTTTGTATGTCTCTAA+TGG | 0.393901 | 7.4:-49111077 | None:intergenic |
| TTCAAGACGTGCATGGAAAT+AGG | 0.396142 | 7.4:+49117665 | MS.gene84434:CDS |
| TTAGCAAGGTCTGATGTTGC+TGG | 0.397541 | 7.4:+49119799 | MS.gene84434:CDS |
| ATCTAATTCTGGCCTATGTT+TGG | 0.405339 | 7.4:+49112289 | MS.gene84434:CDS |
| TCCAAGAGAGGTAGGAGAAA+AGG | 0.416552 | 7.4:+49118402 | MS.gene84434:CDS |
| ATTTCATGGACAGGAACAAC+AGG | 0.425535 | 7.4:+49110402 | MS.gene84434:intron |
| ATCTTGTTCATCAAGATTTG+AGG | 0.430475 | 7.4:-49110445 | None:intergenic |
| GGTGTATAGTGAGGCTTATA+GGG | 0.433959 | 7.4:-49118507 | None:intergenic |
| CATCAGAAGGTTCAACTTCA+GGG | 0.434183 | 7.4:+49116196 | MS.gene84434:CDS |
| TGACCATCTCCACGAGGAAC+TGG | 0.434927 | 7.4:-49119640 | None:intergenic |
| AGTCTCGAGGCATCCGATCT+TGG | 0.440108 | 7.4:+49118454 | MS.gene84434:CDS |
| TTCTTTGTTCTCTTCTTCAT+CGG | 0.444133 | 7.4:-49111413 | None:intergenic |
| TATCACAGAATGGAAACCTT+TGG | 0.447819 | 7.4:+49116359 | MS.gene84434:CDS |
| ATCTTGCCCTTCCATTGAGT+TGG | 0.448245 | 7.4:-49116322 | None:intergenic |
| AACAATATTCAACACTTCAT+CGG | 0.465426 | 7.4:-49111749 | None:intergenic |
| CAGATGTGTGTAAAGATTGT+TGG | 0.468719 | 7.4:+49118835 | MS.gene84434:CDS |
| ACTACCTGTGGATAACAATT+GGG | 0.469710 | 7.4:-49120692 | None:intergenic |
| CCAAGAGAGGTAGGAGAAAA+GGG | 0.469723 | 7.4:+49118403 | MS.gene84434:CDS |
| GATGCGTTTATCCAACTCAA+TGG | 0.488340 | 7.4:+49116311 | MS.gene84434:CDS |
| ATTTATTTCCCAAACCTTGT+GGG | 0.492257 | 7.4:-49111100 | None:intergenic |
| CATTTATTTCCCAAACCTTG+TGG | 0.501091 | 7.4:-49111101 | None:intergenic |
| GCTAAGGAACGCATTGAAGC+TGG | 0.501599 | 7.4:+49121267 | MS.gene84434:CDS |
| AAACATCTTAACCTTTAAGA+AGG | 0.506218 | 7.4:-49119830 | None:intergenic |
| GTGATTTCCTTTGAATTAGA+GGG | 0.513594 | 7.4:-49116273 | None:intergenic |
| AAACATATATCTTTCTCCAA+AGG | 0.515068 | 7.4:-49116375 | None:intergenic |
| TGGAGCTTGATGGCACCTCA+TGG | 0.515829 | 7.4:-49118383 | None:intergenic |
| AGATACCTCATTATACATCA+TGG | 0.526029 | 7.4:+49111183 | MS.gene84434:CDS |
| GGGCCAGTTCCTCGTGGAGA+TGG | 0.526534 | 7.4:+49119637 | MS.gene84434:CDS |
| AAGGTCTGATGTTGCTGGAT+GGG | 0.527692 | 7.4:+49119804 | MS.gene84434:CDS |
| ATGCATGAAGAGATGCCAAA+TGG | 0.528944 | 7.4:+49117695 | MS.gene84434:CDS |
| TGTGGTGATGATACGTTTGA+AGG | 0.529298 | 7.4:+49119616 | MS.gene84434:CDS |
| AACAATTGGGTTCTGATGAG+TGG | 0.532051 | 7.4:-49120679 | None:intergenic |
| AGATGTGTGTAAAGATTGTT+GGG | 0.536713 | 7.4:+49118836 | MS.gene84434:CDS |
| TTTGGATAAAAGTTTGAGTG+AGG | 0.537637 | 7.4:+49112307 | MS.gene84434:CDS |
| GAAGGTGAGAGGGAAGTATG+TGG | 0.544057 | 7.4:+49115508 | MS.gene84434:CDS |
| GTTAAAAGAAAAGATCCAAA+AGG | 0.545062 | 7.4:+49110474 | MS.gene84434:CDS |
| TGACACTGTTGTCATGACCT+TGG | 0.545294 | 7.4:-49110991 | None:intergenic |
| AGGTCTGATGTTGCTGGATG+GGG | 0.550995 | 7.4:+49119805 | MS.gene84434:CDS |
| TTGTATTGATGCTTATCGCA+AGG | 0.552057 | 7.4:+49120634 | MS.gene84434:CDS |
| AGGTACCACTGCAGAAATTG+AGG | 0.552212 | 7.4:+49111786 | MS.gene84434:CDS |
| AACAATCTTTACACACATCT+GGG | 0.552907 | 7.4:-49118833 | None:intergenic |
| ATCTTTGATTGTCCTCTGCA+CGG | 0.553369 | 7.4:+49114447 | MS.gene84434:CDS |
| CGTTTATCCAACTCAATGGA+AGG | 0.558111 | 7.4:+49116315 | MS.gene84434:CDS |
| CATCAAGCTCCAAGAGAGGT+AGG | 0.559332 | 7.4:+49118394 | MS.gene84434:CDS |
| AAAGAATCTACAAATTCTCA+TGG | 0.561243 | 7.4:+49121378 | MS.gene84434:CDS |
| TGCTGGCTTCAAGACGTGCA+TGG | 0.563883 | 7.4:+49117658 | MS.gene84434:CDS |
| CAAGGTCTGATGTTGCTGGA+TGG | 0.567604 | 7.4:+49119803 | MS.gene84434:CDS |
| GGATAATGAAATTCAAACAA+TGG | 0.569073 | 7.4:+49116227 | MS.gene84434:CDS |
| AAAGATCCAAAAGGAGCGGA+TGG | 0.569833 | 7.4:+49110483 | MS.gene84434:CDS |
| ATTGGCACCCTCTAATTCAA+AGG | 0.571932 | 7.4:+49116266 | MS.gene84434:CDS |
| TCTCCAATGTGAACTTTCCA+AGG | 0.573777 | 7.4:+49110974 | MS.gene84434:CDS |
| AGAACCCAATTGTTATCCAC+AGG | 0.576141 | 7.4:+49120688 | MS.gene84434:CDS |
| ATTGTTCGAAGCTATATTGG+AGG | 0.577334 | 7.4:+49111766 | MS.gene84434:CDS |
| TGTATCCATGATGTATAATG+AGG | 0.582754 | 7.4:-49111188 | None:intergenic |
| TCGTGTAGCCATATTTGCTA+AGG | 0.583432 | 7.4:+49121251 | MS.gene84434:CDS |
| TCTACAAATTCTCATGGCAA+AGG | 0.584690 | 7.4:+49121384 | MS.gene84434:CDS |
| TGTATTGATGCTTATCGCAA+GGG | 0.585357 | 7.4:+49120635 | MS.gene84434:CDS |
| TATGCAGTTGTCTTATATGT+CGG | 0.585978 | 7.4:+49117627 | MS.gene84434:intron |
| GATGTCAATATCTCATCAGA+AGG | 0.588941 | 7.4:+49116183 | MS.gene84434:CDS |
| AGATGCATAATATCACAGAA+TGG | 0.590726 | 7.4:+49116349 | MS.gene84434:CDS |
| CAATGCAGACATCGATTCAG+AGG | 0.599779 | 7.4:+49118741 | MS.gene84434:CDS |
| TGGACAGGAACAACAGGGAG+AGG | 0.603618 | 7.4:+49110408 | MS.gene84434:intron |
| ATATATTACGATCAACATGC+AGG | 0.606040 | 7.4:+49111367 | MS.gene84434:CDS |
| AAAATCAAAGAGCACCCTCA+TGG | 0.608079 | 7.4:+49121322 | MS.gene84434:CDS |
| TAACTCATCAACAACTGGGA+AGG | 0.608085 | 7.4:+49111019 | MS.gene84434:CDS |
| TGTGTAAAGATTGTTGGGCC+AGG | 0.608263 | 7.4:+49118841 | MS.gene84434:CDS |
| ACATACAAAGGTTTCCCACA+AGG | 0.608598 | 7.4:+49111086 | MS.gene84434:CDS |
| TTTGGCAACCAGAAGGTGAG+AGG | 0.613167 | 7.4:+49115497 | MS.gene84434:CDS |
| CAACCAATTTGGCAACCAGA+AGG | 0.613641 | 7.4:+49115490 | MS.gene84434:CDS |
| ATACATTATGAACAACATGA+AGG | 0.615870 | 7.4:-49111124 | None:intergenic |
| CTTTGTATGTCTCTAATGGA+TGG | 0.618170 | 7.4:-49111073 | None:intergenic |
| AAAACAAACTCTAGGTCTAG+AGG | 0.620684 | 7.4:-49110158 | None:intergenic |
| CTTGTTGTGAGAAATACTGC+GGG | 0.625135 | 7.4:+49118586 | MS.gene84434:CDS |
| GGAACGCATTGAAGCTGGTG+AGG | 0.629930 | 7.4:+49121272 | MS.gene84434:CDS |
| CACATTCCTTGACACTCACA+AGG | 0.630215 | 7.4:-49118528 | None:intergenic |
| TTGGCAACCAGAAGGTGAGA+GGG | 0.633976 | 7.4:+49115498 | MS.gene84434:CDS |
| AAGAAAAGATCCAAAAGGAG+CGG | 0.641722 | 7.4:+49110479 | MS.gene84434:CDS |
| GTGCCATCAAGCTCCAAGAG+AGG | 0.643581 | 7.4:+49118390 | MS.gene84434:CDS |
| TGACCTTGGAAAGTTCACAT+TGG | 0.643642 | 7.4:-49110977 | None:intergenic |
| ATTGGCTTCAAGAAACCATG+AGG | 0.645862 | 7.4:-49121337 | None:intergenic |
| GGTTGAGAACATCCGTGCAG+AGG | 0.648329 | 7.4:-49114459 | None:intergenic |
| GTTTATCCAACTCAATGGAA+GGG | 0.649922 | 7.4:+49116316 | MS.gene84434:CDS |
| GTGGTGATGATACGTTTGAA+GGG | 0.651606 | 7.4:+49119617 | MS.gene84434:CDS |
| TATACACCTTGTGAGTGTCA+AGG | 0.655572 | 7.4:+49118522 | MS.gene84434:CDS |
| CACTCACAAGGTGTATAGTG+AGG | 0.661649 | 7.4:-49118516 | None:intergenic |
| CACAAAGAAGCAGAAAAGCG+TGG | 0.662495 | 7.4:+49120045 | MS.gene84434:CDS |
| CATCCATTAGAGACATACAA+AGG | 0.663649 | 7.4:+49111074 | MS.gene84434:CDS |
| TTGGCTTCAAGAAACCATGA+GGG | 0.673115 | 7.4:-49121336 | None:intergenic |
| TTTGAAGGGCCAGTTCCTCG+TGG | 0.677096 | 7.4:+49119631 | MS.gene84434:CDS |
| TTTCATGGACAGGAACAACA+GGG | 0.680957 | 7.4:+49110403 | MS.gene84434:intron |
| TCTTGTTGTGAGAAATACTG+CGG | 0.680957 | 7.4:+49118585 | MS.gene84434:CDS |
| GATATAACTCATCAACAACT+GGG | 0.682604 | 7.4:+49111015 | MS.gene84434:CDS |
| TCACATTGACCATCTCCACG+AGG | 0.735800 | 7.4:-49119646 | None:intergenic |
| GAGTATTTAGGAGAGTACAC+AGG | 0.736960 | 7.4:+49120009 | MS.gene84434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 49110133 | 49121422 | 49110133 | ID=MS.gene84434 |
| chr7.4 | mRNA | 49110133 | 49121422 | 49110133 | ID=MS.gene84434.t1;Parent=MS.gene84434 |
| chr7.4 | exon | 49110133 | 49110171 | 49110133 | ID=MS.gene84434.t1.exon1;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49110133 | 49110171 | 49110133 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49110415 | 49110516 | 49110415 | ID=MS.gene84434.t1.exon2;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49110415 | 49110516 | 49110415 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49110948 | 49111219 | 49110948 | ID=MS.gene84434.t1.exon3;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49110948 | 49111219 | 49110948 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49111321 | 49111476 | 49111321 | ID=MS.gene84434.t1.exon4;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49111321 | 49111476 | 49111321 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49111723 | 49111807 | 49111723 | ID=MS.gene84434.t1.exon5;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49111723 | 49111807 | 49111723 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49112230 | 49112370 | 49112230 | ID=MS.gene84434.t1.exon6;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49112230 | 49112370 | 49112230 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49114447 | 49114494 | 49114447 | ID=MS.gene84434.t1.exon7;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49114447 | 49114494 | 49114447 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49115481 | 49115549 | 49115481 | ID=MS.gene84434.t1.exon8;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49115481 | 49115549 | 49115481 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49116177 | 49116427 | 49116177 | ID=MS.gene84434.t1.exon9;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49116177 | 49116427 | 49116177 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49117634 | 49117757 | 49117634 | ID=MS.gene84434.t1.exon10;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49117634 | 49117757 | 49117634 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49118381 | 49118607 | 49118381 | ID=MS.gene84434.t1.exon11;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49118381 | 49118607 | 49118381 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49118731 | 49118862 | 49118731 | ID=MS.gene84434.t1.exon12;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49118731 | 49118862 | 49118731 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49119615 | 49119705 | 49119615 | ID=MS.gene84434.t1.exon13;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49119615 | 49119705 | 49119615 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49119793 | 49119840 | 49119793 | ID=MS.gene84434.t1.exon14;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49119793 | 49119840 | 49119793 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49119991 | 49120119 | 49119991 | ID=MS.gene84434.t1.exon15;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49119991 | 49120119 | 49119991 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49120632 | 49120709 | 49120632 | ID=MS.gene84434.t1.exon16;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49120632 | 49120709 | 49120632 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| chr7.4 | exon | 49121228 | 49121422 | 49121228 | ID=MS.gene84434.t1.exon17;Parent=MS.gene84434.t1 |
| chr7.4 | CDS | 49121228 | 49121422 | 49121228 | ID=cds.MS.gene84434.t1;Parent=MS.gene84434.t1 |
| Gene Sequence |
| Protein sequence |