Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84505.t1 | XP_024634637.1 | 83 | 264 | 44 | 1 | 1 | 263 | 1 | 264 | 3.80E-126 | 461.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84505.t1 | Q8L3W1 | 26.2 | 336 | 179 | 10 | 12 | 283 | 6 | 336 | 1.2e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84505.t1 | G8A2Z5 | 76.6 | 282 | 56 | 3 | 1 | 281 | 1 | 273 | 1.5e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84505.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84505.t1 | MTR_3g061310 | 74.386 | 285 | 70 | 2 | 1 | 282 | 1 | 285 | 3.39e-151 | 424 |
| MS.gene84505.t1 | MTR_3g061350 | 73.592 | 284 | 73 | 2 | 1 | 282 | 1 | 284 | 7.53e-151 | 423 |
| MS.gene84505.t1 | MTR_3g061340 | 76.596 | 282 | 56 | 3 | 1 | 281 | 1 | 273 | 2.82e-150 | 421 |
| MS.gene84505.t1 | MTR_3g061370 | 73.592 | 284 | 70 | 3 | 1 | 282 | 1 | 281 | 4.33e-148 | 416 |
| MS.gene84505.t1 | MTR_3g061320 | 73.498 | 283 | 70 | 3 | 1 | 282 | 1 | 279 | 3.03e-147 | 414 |
| MS.gene84505.t1 | MTR_3g061330 | 72.908 | 251 | 66 | 2 | 1 | 249 | 1 | 251 | 1.67e-131 | 373 |
| MS.gene84505.t1 | MTR_3g061290 | 80.247 | 162 | 31 | 1 | 1 | 161 | 1 | 162 | 1.90e-92 | 272 |
| MS.gene84505.t1 | MTR_3g061300 | 88.889 | 126 | 14 | 0 | 161 | 286 | 2 | 127 | 1.71e-76 | 229 |
| MS.gene84505.t1 | MTR_3g061220 | 82.308 | 130 | 10 | 1 | 1 | 130 | 1 | 117 | 1.80e-70 | 213 |
| MS.gene84505.t1 | MTR_1g035460 | 36.177 | 293 | 145 | 9 | 26 | 283 | 2 | 287 | 2.99e-51 | 173 |
| MS.gene84505.t1 | MTR_8g103940 | 33.861 | 316 | 158 | 9 | 4 | 283 | 31 | 331 | 5.67e-48 | 167 |
| MS.gene84505.t1 | MTR_8g103940 | 36.752 | 117 | 64 | 4 | 173 | 283 | 383 | 495 | 4.90e-15 | 75.1 |
| MS.gene84505.t1 | MTR_1g108780 | 33.667 | 300 | 147 | 10 | 21 | 285 | 10 | 292 | 3.67e-44 | 156 |
| MS.gene84505.t1 | MTR_1g108780 | 34.711 | 121 | 68 | 4 | 173 | 286 | 345 | 461 | 2.24e-11 | 64.3 |
| MS.gene84505.t1 | MTR_7g050710 | 33.779 | 299 | 173 | 9 | 9 | 283 | 10 | 307 | 7.24e-44 | 152 |
| MS.gene84505.t1 | MTR_7g050560 | 35.315 | 286 | 169 | 7 | 9 | 283 | 10 | 290 | 1.18e-39 | 140 |
| MS.gene84505.t1 | MTR_5g044670 | 29.470 | 302 | 173 | 12 | 12 | 285 | 16 | 305 | 3.11e-37 | 135 |
| MS.gene84505.t1 | MTR_3g098790 | 31.615 | 291 | 182 | 9 | 9 | 283 | 10 | 299 | 1.96e-33 | 124 |
| MS.gene84505.t1 | MTR_1g035640 | 30.142 | 282 | 179 | 6 | 12 | 284 | 9 | 281 | 2.06e-33 | 127 |
| MS.gene84505.t1 | MTR_7g050580 | 31.469 | 286 | 180 | 7 | 9 | 283 | 10 | 290 | 3.29e-32 | 121 |
| MS.gene84505.t1 | MTR_7g050720 | 30.351 | 313 | 176 | 10 | 9 | 283 | 7 | 315 | 6.18e-32 | 120 |
| MS.gene84505.t1 | MTR_4g119990 | 30.293 | 307 | 172 | 11 | 10 | 282 | 13 | 311 | 1.62e-29 | 115 |
| MS.gene84505.t1 | MTR_7g050590 | 30.769 | 286 | 163 | 10 | 26 | 283 | 2 | 280 | 1.79e-28 | 110 |
| MS.gene84505.t1 | MTR_1g035570 | 27.458 | 295 | 177 | 9 | 12 | 284 | 9 | 288 | 2.77e-26 | 107 |
| MS.gene84505.t1 | MTR_3g005480 | 29.749 | 279 | 152 | 9 | 11 | 283 | 20 | 260 | 1.23e-25 | 102 |
| MS.gene84505.t1 | MTR_6g043890 | 26.950 | 282 | 181 | 8 | 10 | 269 | 13 | 291 | 1.03e-24 | 101 |
| MS.gene84505.t1 | MTR_3g005490 | 28.169 | 284 | 149 | 8 | 12 | 284 | 21 | 260 | 3.80e-24 | 98.6 |
| MS.gene84505.t1 | MTR_3g005420 | 27.458 | 295 | 168 | 7 | 1 | 284 | 278 | 537 | 1.35e-23 | 100 |
| MS.gene84505.t1 | MTR_3g005420 | 26.259 | 278 | 134 | 9 | 12 | 276 | 40 | 259 | 2.88e-16 | 79.0 |
| MS.gene84505.t1 | MTR_5g070440 | 27.240 | 279 | 167 | 6 | 12 | 284 | 21 | 269 | 1.84e-23 | 97.1 |
| MS.gene84505.t1 | MTR_1g035510 | 30.804 | 224 | 137 | 7 | 26 | 234 | 2 | 222 | 3.31e-21 | 89.7 |
| MS.gene84505.t1 | MTR_6g061070 | 27.419 | 310 | 180 | 11 | 8 | 281 | 20 | 320 | 5.84e-21 | 92.4 |
| MS.gene84505.t1 | MTR_3g005495 | 30.035 | 283 | 134 | 9 | 4 | 272 | 231 | 463 | 6.21e-21 | 92.4 |
| MS.gene84505.t1 | MTR_3g005495 | 41.667 | 84 | 49 | 0 | 25 | 108 | 28 | 111 | 6.26e-16 | 77.8 |
| MS.gene84505.t1 | MTR_3g005460 | 25.763 | 295 | 177 | 7 | 1 | 282 | 251 | 516 | 2.14e-20 | 91.3 |
| MS.gene84505.t1 | MTR_3g005460 | 40.404 | 99 | 57 | 1 | 12 | 108 | 25 | 123 | 6.60e-17 | 80.9 |
| MS.gene84505.t1 | MTR_1g035440 | 45.192 | 104 | 54 | 2 | 8 | 108 | 11 | 114 | 2.65e-20 | 87.8 |
| MS.gene84505.t1 | MTR_1g050845 | 25.952 | 289 | 175 | 9 | 9 | 284 | 6 | 268 | 6.37e-20 | 90.1 |
| MS.gene84505.t1 | MTR_4g068320 | 32.847 | 137 | 81 | 2 | 12 | 137 | 6 | 142 | 7.38e-20 | 89.0 |
| MS.gene84505.t1 | MTR_1g035650 | 41.346 | 104 | 57 | 2 | 9 | 110 | 6 | 107 | 9.31e-20 | 85.5 |
| MS.gene84505.t1 | MTR_1g035620 | 25.172 | 290 | 188 | 7 | 9 | 284 | 6 | 280 | 1.70e-19 | 87.8 |
| MS.gene84505.t1 | MTR_1g034240 | 34.307 | 137 | 77 | 3 | 12 | 136 | 7 | 142 | 2.71e-19 | 87.4 |
| MS.gene84505.t1 | MTR_7g050640 | 41.667 | 96 | 54 | 1 | 10 | 103 | 11 | 106 | 2.06e-17 | 76.6 |
| MS.gene84505.t1 | MTR_3g005420 | 26.182 | 275 | 138 | 8 | 12 | 276 | 21 | 240 | 2.05e-16 | 79.3 |
| MS.gene84505.t1 | MTR_3g005440 | 37.500 | 96 | 60 | 0 | 13 | 108 | 23 | 118 | 2.68e-16 | 79.0 |
| MS.gene84505.t1 | MTR_3g005440 | 39.080 | 87 | 53 | 0 | 22 | 108 | 254 | 340 | 5.10e-14 | 72.0 |
| MS.gene84505.t1 | MTR_1g035520 | 26.727 | 333 | 172 | 13 | 4 | 281 | 67 | 382 | 6.52e-16 | 77.4 |
| MS.gene84505.t1 | MTR_1g033740 | 32.143 | 140 | 88 | 4 | 10 | 145 | 20 | 156 | 1.29e-15 | 73.9 |
| MS.gene84505.t1 | MTR_1g021360 | 24.662 | 296 | 201 | 9 | 10 | 286 | 182 | 474 | 2.32e-15 | 76.3 |
| MS.gene84505.t1 | MTR_1g035480 | 31.915 | 141 | 84 | 5 | 2 | 133 | 7 | 144 | 2.88e-15 | 72.8 |
| MS.gene84505.t1 | MTR_1g034210 | 37.624 | 101 | 59 | 2 | 12 | 110 | 7 | 105 | 7.97e-15 | 73.9 |
| MS.gene84505.t1 | MTR_1g035470 | 33.333 | 138 | 83 | 3 | 26 | 157 | 2 | 136 | 8.01e-15 | 70.5 |
| MS.gene84505.t1 | MTR_1g034210 | 33.088 | 136 | 78 | 4 | 12 | 136 | 7 | 140 | 1.01e-14 | 73.9 |
| MS.gene84505.t1 | MTR_1g034210 | 30.357 | 112 | 71 | 4 | 176 | 283 | 250 | 358 | 7.89e-11 | 62.4 |
| MS.gene84505.t1 | MTR_1g035500 | 31.915 | 141 | 84 | 5 | 2 | 133 | 15 | 152 | 1.38e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84505.t1 | AT4G01580 | 34.559 | 136 | 81 | 4 | 11 | 143 | 29 | 159 | 3.51e-19 | 83.6 |
| MS.gene84505.t1 | AT1G49475 | 36.667 | 120 | 73 | 2 | 11 | 128 | 33 | 151 | 1.57e-18 | 82.0 |
| MS.gene84505.t1 | AT3G18990 | 36.364 | 110 | 68 | 1 | 12 | 119 | 6 | 115 | 1.99e-17 | 81.6 |
| MS.gene84505.t1 | AT3G18990 | 36.364 | 110 | 68 | 1 | 12 | 119 | 6 | 115 | 3.62e-17 | 80.9 |
| MS.gene84505.t1 | AT3G18960 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 1.13e-16 | 77.0 |
| MS.gene84505.t1 | AT3G18960 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 1.16e-16 | 77.0 |
| MS.gene84505.t1 | AT3G18960 | 40.476 | 84 | 50 | 0 | 25 | 108 | 8 | 91 | 3.56e-14 | 69.3 |
Find 72 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAATCACTTGAGATTT+TGG | 0.170003 | 3.1:+45433839 | MS.gene84505:CDS |
| ACTTATAAACAAGAAATATT+TGG | 0.218654 | 3.1:+45434552 | MS.gene84505:CDS |
| TGTCTCCTAGTAAACTTATT+TGG | 0.219584 | 3.1:-45433546 | None:intergenic |
| GCACTAAATGGAAAGTTTAT+TGG | 0.240506 | 3.1:+45433613 | MS.gene84505:CDS |
| CAGTATGTACCAGCTTTAAA+TGG | 0.241111 | 3.1:+45434361 | MS.gene84505:intron |
| CGACCACATAAGAAAGTTAA+AGG | 0.255678 | 3.1:+45433915 | MS.gene84505:CDS |
| AGACTCCTGATGGCACTAAA+TGG | 0.296213 | 3.1:+45433601 | MS.gene84505:CDS |
| AGAAAATCAATGGTGAGATT+TGG | 0.311173 | 3.1:+45433637 | MS.gene84505:CDS |
| AATCTATTTCTAGTGCATTC+TGG | 0.311928 | 3.1:-45433767 | None:intergenic |
| AAGTATGTCATGTTGCAAAT+TGG | 0.313229 | 3.1:+45434403 | MS.gene84505:CDS |
| TTTCTAGTACTCTTCTGATT+TGG | 0.316148 | 3.1:-45433870 | None:intergenic |
| CTACTCATCTAGTAGAAAAT+CGG | 0.337210 | 3.1:+45434230 | MS.gene84505:CDS |
| CTCTCTAGGACATGGGTGTT+TGG | 0.346409 | 3.1:+45433695 | MS.gene84505:CDS |
| ACATTTCCTTTATCATCATA+AGG | 0.349782 | 3.1:-45433804 | None:intergenic |
| ATCAGAAGAGTACTAGAAAA+AGG | 0.373090 | 3.1:+45433874 | MS.gene84505:CDS |
| AGTATGTCATGTTGCAAATT+GGG | 0.381410 | 3.1:+45434404 | MS.gene84505:CDS |
| TGTGACCCTTATGATGATAA+AGG | 0.386477 | 3.1:+45433798 | MS.gene84505:CDS |
| CATTTCCTTTATCATCATAA+GGG | 0.402070 | 3.1:-45433803 | None:intergenic |
| TTGGTAATGTTCAAATATAA+AGG | 0.407584 | 3.1:+45433714 | MS.gene84505:CDS |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3.1:-45434154 | None:intergenic |
| AGTATGTACCAGCTTTAAAT+GGG | 0.425891 | 3.1:+45434362 | MS.gene84505:intron |
| GAAGAACTACATCATGGAAT+TGG | 0.429478 | 3.1:+45434131 | MS.gene84505:CDS |
| TGTGGTCGAGGATAAAATAA+TGG | 0.434350 | 3.1:-45433900 | None:intergenic |
| AGATTTGGTTTGAAAGGGGT+TGG | 0.435761 | 3.1:+45433652 | MS.gene84505:CDS |
| TTTACTGAAAATTACTCTCT+AGG | 0.440048 | 3.1:+45433681 | MS.gene84505:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3.1:-45433606 | None:intergenic |
| AATGGTCGCCGCCTTTCGGC+CGG | 0.442339 | 3.1:+45434472 | MS.gene84505:CDS |
| ATACCTTTAACTTTCTTATG+TGG | 0.443654 | 3.1:-45433918 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+GGG | 0.445670 | 3.1:+45433647 | MS.gene84505:CDS |
| TCCACTTTCACTTGCAAACA+AGG | 0.450954 | 3.1:-45434500 | None:intergenic |
| AAGTTTGATGTACTCATACT+TGG | 0.452043 | 3.1:+45433744 | MS.gene84505:CDS |
| GAAGAATAATCTTGAAGAAA+CGG | 0.454080 | 3.1:-45433161 | None:intergenic |
| ATGGTGAGATTTGGTTTGAA+AGG | 0.464155 | 3.1:+45433646 | MS.gene84505:CDS |
| GTGAAAGTGGACTGCAACCA+GGG | 0.472693 | 3.1:+45434512 | MS.gene84505:CDS |
| TGCAAATTGGGAAAAGATCA+TGG | 0.479903 | 3.1:+45434416 | MS.gene84505:CDS |
| AAATACCAAATAAGTTTACT+AGG | 0.488511 | 3.1:+45433541 | MS.gene84505:CDS |
| TTCTTCAAACTAATCTTCAA+AGG | 0.500110 | 3.1:+45433178 | MS.gene84505:CDS |
| TTAACTTTCTTATGTGGTCG+AGG | 0.501785 | 3.1:-45433912 | None:intergenic |
| CCCTTGTTTGCAAGTGAAAG+TGG | 0.508691 | 3.1:+45434499 | MS.gene84505:CDS |
| AGTGAAAGTGGACTGCAACC+AGG | 0.512708 | 3.1:+45434511 | MS.gene84505:CDS |
| GTTTATTGGAAGAAAATCAA+TGG | 0.517633 | 3.1:+45433627 | MS.gene84505:CDS |
| TCAATAACCCCATTTAAAGC+TGG | 0.523790 | 3.1:-45434370 | None:intergenic |
| TACTCATCTAGTAGAAAATC+GGG | 0.527511 | 3.1:+45434231 | MS.gene84505:CDS |
| ACAAGGGCCACCCGGCCGAA+AGG | 0.528732 | 3.1:-45434483 | None:intergenic |
| AATAATCTTGAAGAAACGGA+TGG | 0.540502 | 3.1:-45433157 | None:intergenic |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3.1:+45434139 | MS.gene84505:CDS |
| ATGGTCGCCGCCTTTCGGCC+GGG | 0.543493 | 3.1:+45434473 | MS.gene84505:CDS |
| TCAGGAGTCTTTATCAACAC+TGG | 0.545485 | 3.1:-45433588 | None:intergenic |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3.1:+45434153 | MS.gene84505:CDS |
| ACTTGCAAACAAGGGCCACC+CGG | 0.568831 | 3.1:-45434491 | None:intergenic |
| ATAATCTTGAAGAAACGGAT+GGG | 0.575151 | 3.1:-45433156 | None:intergenic |
| AAACTACATCATCCATGGCT+AGG | 0.576343 | 3.1:+45433118 | None:intergenic |
| CTTGAAGAAACGGATGGGGA+GGG | 0.581283 | 3.1:-45433151 | None:intergenic |
| TCAAAGACACAAACATCCCC+TGG | 0.586035 | 3.1:-45434529 | None:intergenic |
| GAAAATTACTCTCTAGGACA+TGG | 0.586964 | 3.1:+45433687 | MS.gene84505:CDS |
| TCTTGAAGAAACGGATGGGG+AGG | 0.587791 | 3.1:-45433152 | None:intergenic |
| GGTAGCATTTCTCCTAGCCA+TGG | 0.591389 | 3.1:-45433130 | None:intergenic |
| AAAATTACTCTCTAGGACAT+GGG | 0.591995 | 3.1:+45433688 | MS.gene84505:CDS |
| GAAATTGCTCCCTTGTTGCG+AGG | 0.598342 | 3.1:+45434444 | MS.gene84505:CDS |
| CTAGTGGAAGAACTACATCA+TGG | 0.603212 | 3.1:+45434125 | MS.gene84505:CDS |
| AGGGCCACCCGGCCGAAAGG+CGG | 0.606437 | 3.1:-45434480 | None:intergenic |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3.1:+45434138 | MS.gene84505:CDS |
| TAATCTTGAAGAAACGGATG+GGG | 0.621796 | 3.1:-45433155 | None:intergenic |
| TTTACTAGGAGACATGGAGT+TGG | 0.629451 | 3.1:+45433555 | MS.gene84505:CDS |
| GGTGAGATTTGGTTTGAAAG+GGG | 0.635152 | 3.1:+45433648 | MS.gene84505:CDS |
| AATAAGTTTACTAGGAGACA+TGG | 0.640204 | 3.1:+45433549 | MS.gene84505:CDS |
| GTGTTGATAAAGACTCCTGA+TGG | 0.643737 | 3.1:+45433591 | MS.gene84505:CDS |
| GTCGCCGCCTTTCGGCCGGG+TGG | 0.644521 | 3.1:+45434476 | MS.gene84505:CDS |
| CCACTTTCACTTGCAAACAA+GGG | 0.646969 | 3.1:-45434499 | None:intergenic |
| TGAAAGTGGACTGCAACCAG+GGG | 0.684134 | 3.1:+45434513 | MS.gene84505:CDS |
| GTATGTACCAGCTTTAAATG+GGG | 0.686003 | 3.1:+45434363 | MS.gene84505:intron |
| TCATCTAGTAGAAAATCGGG+TGG | 0.711417 | 3.1:+45434234 | MS.gene84505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATATAGCATGT+TGG | - | chr3.1:45433229-45433248 | None:intergenic | 15.0% |
| !! | ACTTATAAACAAGAAATATT+TGG | + | chr3.1:45434552-45434571 | MS.gene84505:CDS | 15.0% |
| !! | AAATACCAAATAAGTTTACT+AGG | + | chr3.1:45433541-45433560 | MS.gene84505:CDS | 20.0% |
| !! | GATTATTTGAAAATTCGTTA+TGG | + | chr3.1:45433371-45433390 | MS.gene84505:intron | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3.1:45434208-45434227 | None:intergenic | 20.0% |
| !!! | GTTTTCAGGTTATTTTTTTT+GGG | - | chr3.1:45434002-45434021 | None:intergenic | 20.0% |
| !!! | TGTTTTCAGGTTATTTTTTT+TGG | - | chr3.1:45434003-45434022 | None:intergenic | 20.0% |
| !!! | TTGGTAATGTTCAAATATAA+AGG | + | chr3.1:45433714-45433733 | MS.gene84505:CDS | 20.0% |
| ! | AAGCACTAGAAATTTGATTA+GGG | + | chr3.1:45433298-45433317 | MS.gene84505:intron | 25.0% |
| ! | AATTCTACACAAATATATGC+AGG | + | chr3.1:45434088-45434107 | MS.gene84505:intron | 25.0% |
| ! | ACATTTCCTTTATCATCATA+AGG | - | chr3.1:45433807-45433826 | None:intergenic | 25.0% |
| ! | CATTTCCTTTATCATCATAA+GGG | - | chr3.1:45433806-45433825 | None:intergenic | 25.0% |
| ! | GAAGAATAATCTTGAAGAAA+CGG | - | chr3.1:45433164-45433183 | None:intergenic | 25.0% |
| ! | GTTTATTGGAAGAAAATCAA+TGG | + | chr3.1:45433627-45433646 | MS.gene84505:CDS | 25.0% |
| ! | TTCTTCAAACTAATCTTCAA+AGG | + | chr3.1:45433178-45433197 | MS.gene84505:CDS | 25.0% |
| ! | TTGAATAATTTCTTCTGTGT+TGG | + | chr3.1:45434060-45434079 | MS.gene84505:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+AGG | + | chr3.1:45433681-45433700 | MS.gene84505:CDS | 25.0% |
| !! | AAAGCACTAGAAATTTGATT+AGG | + | chr3.1:45433297-45433316 | MS.gene84505:intron | 25.0% |
| !! | ATACCTTTAACTTTCTTATG+TGG | - | chr3.1:45433921-45433940 | None:intergenic | 25.0% |
| !!! | ATGAGTGTTGTATTTTTAGA+AGG | + | chr3.1:45433452-45433471 | MS.gene84505:intron | 25.0% |
| AAGTATGTCATGTTGCAAAT+TGG | + | chr3.1:45434403-45434422 | MS.gene84505:CDS | 30.0% | |
| AAGTGATCAGTTTAAACTTC+AGG | - | chr3.1:45433969-45433988 | None:intergenic | 30.0% | |
| AAGTTTGATGTACTCATACT+TGG | + | chr3.1:45433744-45433763 | MS.gene84505:CDS | 30.0% | |
| AATAAGTTTACTAGGAGACA+TGG | + | chr3.1:45433549-45433568 | MS.gene84505:CDS | 30.0% | |
| AATAATCTTGAAGAAACGGA+TGG | - | chr3.1:45433160-45433179 | None:intergenic | 30.0% | |
| AGAAAATCAATGGTGAGATT+TGG | + | chr3.1:45433637-45433656 | MS.gene84505:CDS | 30.0% | |
| AGCATGTTGGAAATCTAAAT+AGG | - | chr3.1:45433216-45433235 | None:intergenic | 30.0% | |
| AGTATGTCATGTTGCAAATT+GGG | + | chr3.1:45434404-45434423 | MS.gene84505:CDS | 30.0% | |
| AGTGATCAGTTTAAACTTCA+GGG | - | chr3.1:45433968-45433987 | None:intergenic | 30.0% | |
| ATAATCTTGAAGAAACGGAT+GGG | - | chr3.1:45433159-45433178 | None:intergenic | 30.0% | |
| CTACTCATCTAGTAGAAAAT+CGG | + | chr3.1:45434230-45434249 | MS.gene84505:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | + | chr3.1:45433613-45433632 | MS.gene84505:CDS | 30.0% | |
| TACTCATCTAGTAGAAAATC+GGG | + | chr3.1:45434231-45434250 | MS.gene84505:CDS | 30.0% | |
| TGTCTCCTAGTAAACTTATT+TGG | - | chr3.1:45433549-45433568 | None:intergenic | 30.0% | |
| ! | GATTTTCTACTAGATGAGTA+GGG | - | chr3.1:45434231-45434250 | None:intergenic | 30.0% |
| ! | TCATGATGCTTAATGTTTTC+AGG | - | chr3.1:45434016-45434035 | None:intergenic | 30.0% |
| ! | TGATGAATCACTTGAGATTT+TGG | + | chr3.1:45433839-45433858 | MS.gene84505:CDS | 30.0% |
| ! | TTTCTAGTACTCTTCTGATT+TGG | - | chr3.1:45433873-45433892 | None:intergenic | 30.0% |
| !! | AAAATTACTCTCTAGGACAT+GGG | + | chr3.1:45433688-45433707 | MS.gene84505:CDS | 30.0% |
| !! | AATCTATTTCTAGTGCATTC+TGG | - | chr3.1:45433770-45433789 | None:intergenic | 30.0% |
| !! | AGTATGTACCAGCTTTAAAT+GGG | + | chr3.1:45434362-45434381 | MS.gene84505:intron | 30.0% |
| !! | ATCAGAAGAGTACTAGAAAA+AGG | + | chr3.1:45433874-45433893 | MS.gene84505:CDS | 30.0% |
| !!! | AACTGTCACTTTTGTAGATA+TGG | - | chr3.1:45434588-45434607 | None:intergenic | 30.0% |
| CGACCACATAAGAAAGTTAA+AGG | + | chr3.1:45433915-45433934 | MS.gene84505:CDS | 35.0% | |
| GAAGAACTACATCATGGAAT+TGG | + | chr3.1:45434131-45434150 | MS.gene84505:CDS | 35.0% | |
| GGTGACATTAAAAAGACTAG+TGG | + | chr3.1:45434109-45434128 | MS.gene84505:intron | 35.0% | |
| TAATCTTGAAGAAACGGATG+GGG | - | chr3.1:45433158-45433177 | None:intergenic | 35.0% | |
| TAGGGATCTGTTAGAATTAG+TGG | + | chr3.1:45433316-45433335 | MS.gene84505:intron | 35.0% | |
| TGCAAATTGGGAAAAGATCA+TGG | + | chr3.1:45434416-45434435 | MS.gene84505:CDS | 35.0% | |
| TGTGACCCTTATGATGATAA+AGG | + | chr3.1:45433798-45433817 | MS.gene84505:CDS | 35.0% | |
| TGTGGTCGAGGATAAAATAA+TGG | - | chr3.1:45433903-45433922 | None:intergenic | 35.0% | |
| TTAACTTTCTTATGTGGTCG+AGG | - | chr3.1:45433915-45433934 | None:intergenic | 35.0% | |
| ! | CACTTGAGATTTTGGATGAA+TGG | + | chr3.1:45433847-45433866 | MS.gene84505:CDS | 35.0% |
| ! | CGATTTTCTACTAGATGAGT+AGG | - | chr3.1:45434232-45434251 | None:intergenic | 35.0% |
| ! | TCAATAACCCCATTTAAAGC+TGG | - | chr3.1:45434373-45434392 | None:intergenic | 35.0% |
| !! | ATGGTGAGATTTGGTTTGAA+AGG | + | chr3.1:45433646-45433665 | MS.gene84505:CDS | 35.0% |
| !! | CAGTATGTACCAGCTTTAAA+TGG | + | chr3.1:45434361-45434380 | MS.gene84505:intron | 35.0% |
| !! | GAAAATTACTCTCTAGGACA+TGG | + | chr3.1:45433687-45433706 | MS.gene84505:CDS | 35.0% |
| !! | GTATGTACCAGCTTTAAATG+GGG | + | chr3.1:45434363-45434382 | MS.gene84505:intron | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+GGG | + | chr3.1:45433647-45433666 | MS.gene84505:CDS | 35.0% |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3.1:45434139-45434158 | MS.gene84505:CDS | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3.1:45433609-45433628 | None:intergenic | 40.0% | |
| CCACTTTCACTTGCAAACAA+GGG | - | chr3.1:45434502-45434521 | None:intergenic | 40.0% | |
| CTAGTGGAAGAACTACATCA+TGG | + | chr3.1:45434125-45434144 | MS.gene84505:CDS | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3.1:45434138-45434157 | MS.gene84505:CDS | 40.0% | |
| TCAGGAGTCTTTATCAACAC+TGG | - | chr3.1:45433591-45433610 | None:intergenic | 40.0% | |
| TCATCTAGTAGAAAATCGGG+TGG | + | chr3.1:45434234-45434253 | MS.gene84505:CDS | 40.0% | |
| TCCACTTTCACTTGCAAACA+AGG | - | chr3.1:45434503-45434522 | None:intergenic | 40.0% | |
| TTTACTAGGAGACATGGAGT+TGG | + | chr3.1:45433555-45433574 | MS.gene84505:CDS | 40.0% | |
| ! | GTGTTGATAAAGACTCCTGA+TGG | + | chr3.1:45433591-45433610 | MS.gene84505:CDS | 40.0% |
| !! | AGATTTGGTTTGAAAGGGGT+TGG | + | chr3.1:45433652-45433671 | MS.gene84505:CDS | 40.0% |
| !! | GGTGAGATTTGGTTTGAAAG+GGG | + | chr3.1:45433648-45433667 | MS.gene84505:CDS | 40.0% |
| !!! | CATTTTTAGCCTCGCAACAA+GGG | - | chr3.1:45434456-45434475 | None:intergenic | 40.0% |
| AGACTCCTGATGGCACTAAA+TGG | + | chr3.1:45433601-45433620 | MS.gene84505:CDS | 45.0% | |
| CCTTGTTGCGAGGCTAAAAA+TGG | + | chr3.1:45434454-45434473 | MS.gene84505:CDS | 45.0% | |
| TAAAAATGGTCGCCGCCTTT+CGG | + | chr3.1:45434468-45434487 | MS.gene84505:CDS | 45.0% | |
| TCAAAGACACAAACATCCCC+TGG | - | chr3.1:45434532-45434551 | None:intergenic | 45.0% | |
| ! | CCCTTGTTTGCAAGTGAAAG+TGG | + | chr3.1:45434499-45434518 | MS.gene84505:CDS | 45.0% |
| !!! | CCATTTTTAGCCTCGCAACA+AGG | - | chr3.1:45434457-45434476 | None:intergenic | 45.0% |
| CTTGAAGAAACGGATGGGGA+GGG | - | chr3.1:45433154-45433173 | None:intergenic | 50.0% | |
| GAAATTGCTCCCTTGTTGCG+AGG | + | chr3.1:45434444-45434463 | MS.gene84505:CDS | 50.0% | |
| TCTTGAAGAAACGGATGGGG+AGG | - | chr3.1:45433155-45433174 | None:intergenic | 50.0% | |
| !! | AGTGAAAGTGGACTGCAACC+AGG | + | chr3.1:45434511-45434530 | MS.gene84505:CDS | 50.0% |
| !! | CTCTCTAGGACATGGGTGTT+TGG | + | chr3.1:45433695-45433714 | MS.gene84505:CDS | 50.0% |
| !! | GTGAAAGTGGACTGCAACCA+GGG | + | chr3.1:45434512-45434531 | MS.gene84505:CDS | 50.0% |
| !! | TGAAAGTGGACTGCAACCAG+GGG | + | chr3.1:45434513-45434532 | MS.gene84505:CDS | 50.0% |
| ACTTGCAAACAAGGGCCACC+CGG | - | chr3.1:45434494-45434513 | None:intergenic | 55.0% | |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3.1:45434157-45434176 | None:intergenic | 55.0% |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3.1:45434153-45434172 | MS.gene84505:CDS | 60.0% | |
| AATGGTCGCCGCCTTTCGGC+CGG | + | chr3.1:45434472-45434491 | MS.gene84505:CDS | 65.0% | |
| ACAAGGGCCACCCGGCCGAA+AGG | - | chr3.1:45434486-45434505 | None:intergenic | 70.0% | |
| ATGGTCGCCGCCTTTCGGCC+GGG | + | chr3.1:45434473-45434492 | MS.gene84505:CDS | 70.0% | |
| AGGGCCACCCGGCCGAAAGG+CGG | - | chr3.1:45434483-45434502 | None:intergenic | 75.0% | |
| ! | GTCGCCGCCTTTCGGCCGGG+TGG | + | chr3.1:45434476-45434495 | MS.gene84505:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45433132 | 45434609 | 45433132 | ID=MS.gene84505 |
| chr3.1 | mRNA | 45433132 | 45434609 | 45433132 | ID=MS.gene84505.t1;Parent=MS.gene84505 |
| chr3.1 | exon | 45433132 | 45433203 | 45433132 | ID=MS.gene84505.t1.exon1;Parent=MS.gene84505.t1 |
| chr3.1 | CDS | 45433132 | 45433203 | 45433132 | ID=cds.MS.gene84505.t1;Parent=MS.gene84505.t1 |
| chr3.1 | exon | 45433540 | 45433936 | 45433540 | ID=MS.gene84505.t1.exon2;Parent=MS.gene84505.t1 |
| chr3.1 | CDS | 45433540 | 45433936 | 45433540 | ID=cds.MS.gene84505.t1;Parent=MS.gene84505.t1 |
| chr3.1 | exon | 45434110 | 45434255 | 45434110 | ID=MS.gene84505.t1.exon3;Parent=MS.gene84505.t1 |
| chr3.1 | CDS | 45434110 | 45434255 | 45434110 | ID=cds.MS.gene84505.t1;Parent=MS.gene84505.t1 |
| chr3.1 | exon | 45434364 | 45434609 | 45434364 | ID=MS.gene84505.t1.exon4;Parent=MS.gene84505.t1 |
| chr3.1 | CDS | 45434364 | 45434609 | 45434364 | ID=cds.MS.gene84505.t1;Parent=MS.gene84505.t1 |
| Gene Sequence |
| Protein sequence |
