AlfalfaGEDB | MS.gene84508

M. sativa cultivar XinJiangDaYe / MS.gene84508

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84508.t1	AES70699.1	96.1	127	5	0	1	127	1	127	9.80E-66	259.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84508.t1	Q851V5	46.3	67	30	2	58	122	963	1025	4.2e-09	62.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84508.t1	G8A2Z9	96.1	127	5	0	1	127	1	127	7.1e-66	259.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene84508.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84508.t1	MTR_3g061300	96.063	127	5	0	1	127	1	127	2.27e-90	257
MS.gene84508.t1	MTR_3g061340	76.860	121	28	0	2	122	153	273	4.11e-64	196
MS.gene84508.t1	MTR_3g061370	69.421	121	37	0	2	122	160	280	3.43e-54	171
MS.gene84508.t1	MTR_3g061350	68.595	121	38	0	2	122	163	283	7.93e-53	167
MS.gene84508.t1	MTR_3g061320	71.429	112	32	0	11	122	167	278	1.88e-50	161
MS.gene84508.t1	MTR_3g061310	60.976	123	46	1	2	122	162	284	1.45e-42	141
MS.gene84508.t1	MTR_3g061330	66.667	90	29	1	2	90	162	251	8.69e-35	120
MS.gene84508.t1	MTR_8g103940	37.391	115	62	4	14	122	383	493	2.68e-16	73.9
MS.gene84508.t1	MTR_1g108780	37.168	113	66	3	14	122	345	456	1.31e-14	69.3
MS.gene84508.t1	MTR_1g108780	32.727	110	60	5	22	126	192	292	1.07e-11	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84508.t1	AT1G49480	32.110	109	64	4	17	120	114	217	1.13e-11	60.1
MS.gene84508.t1	AT1G49480	32.110	109	64	4	17	120	114	217	1.13e-11	60.1
MS.gene84508.t1	AT1G49480	32.110	109	64	4	17	120	114	217	1.13e-11	60.1

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Find 28 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTACATCATGGAAT+TGG	0.417108	3.1:+45447954	MS.gene84508:CDS
AAGTATGTGATGCTGCAGAT+TGG	0.577298	3.1:+45448228	MS.gene84508:CDS
AATGTTCGCCGCCTCTCGGC+CGG	0.489655	3.1:+45448297	MS.gene84508:CDS
ACAAGGACCAACCGGCCGAG+AGG	0.636650	3.1:-45448308	None:intergenic
ACATCATGGAATTGGCCAAA+GGG	0.541191	3.1:+45447962	MS.gene84508:CDS
ACATTTCTAGCCTCACAATA+AGG	0.400255	3.1:-45448279	None:intergenic
ACCACTTTCTCTTGCAAACA+AGG	0.504540	3.1:-45448325	None:intergenic
AGAGAAAGTGGTCTACAAGT+AGG	0.556643	3.1:+45448336	MS.gene84508:CDS
AGGACCAACCGGCCGAGAGG+CGG	0.587468	3.1:-45448305	None:intergenic
AGTATGTGATGCTGCAGATT+GGG	0.492313	3.1:+45448229	MS.gene84508:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACTACATCATGGAAT+TGG	+	chr3.1:45447954-45447973	MS.gene84508:CDS	30.0%
AGTGTGTTCCAACTTTAAAT+GGG	+	chr3.1:45448187-45448206	MS.gene84508:intron	30.0%
CAGTGTGTTCCAACTTTAAA+TGG	+	chr3.1:45448186-45448205	MS.gene84508:intron	35.0%
CTAGTGAAAGAACTACATCA+TGG	+	chr3.1:45447948-45447967	MS.gene84508:CDS	35.0%
GTGTGTTCCAACTTTAAATG+GGG	+	chr3.1:45448188-45448207	MS.gene84508:intron	35.0%
AAGTATGTGATGCTGCAGAT+TGG	+	chr3.1:45448228-45448247	MS.gene84508:CDS	40.0%
ACATCATGGAATTGGCCAAA+GGG	+	chr3.1:45447962-45447981	MS.gene84508:CDS	40.0%
ACCACTTTCTCTTGCAAACA+AGG	-	chr3.1:45448328-45448347	None:intergenic	40.0%
AGAGAAAGTGGTCTACAAGT+AGG	+	chr3.1:45448336-45448355	MS.gene84508:CDS	40.0%
AGTATGTGATGCTGCAGATT+GGG	+	chr3.1:45448229-45448248	MS.gene84508:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	45447941	45448434	45447941	ID=MS.gene84508
chr3.1	mRNA	45447941	45448434	45447941	ID=MS.gene84508.t1;Parent=MS.gene84508
chr3.1	exon	45447941	45448078	45447941	ID=MS.gene84508.t1.exon1;Parent=MS.gene84508.t1
chr3.1	CDS	45447941	45448078	45447941	ID=cds.MS.gene84508.t1;Parent=MS.gene84508.t1
chr3.1	exon	45448189	45448434	45448189	ID=MS.gene84508.t1.exon2;Parent=MS.gene84508.t1
chr3.1	CDS	45448189	45448434	45448189	ID=cds.MS.gene84508.t1;Parent=MS.gene84508.t1

Gene Sequence

>MS.gene84508

ATGAAGACTAGTGAAAGAACTACATCATGGAATTGGCCAAAGGGAGCTAGAGCTCAGGAAGTAGCTTTAAAATTTATCTCAAACAATCCTTTTTTCACAATTCTCATAAACCCTACTCATCTTGCAGAAAATCGAGTGGTAAGGTTAAACACAAAACATTTACATTAATGCATGCAATGCTATATGTATAACATTTATTGTATAATATGTTGTGATTATTATAATGATGATAACATTGTACTATGCAGTGTGTTCCAACTTTAAATGGGGTTATTGAGAACAAAGAAAAGTATGTGATGCTGCAGATTGGGAAAAGATCATGGAATCTGAAACTGCTTCCTTATTGTGAGGCTAGAAATGTTCGCCGCCTCTCGGCCGGTTGGTCCTTGTTTGCAAGAGAAAGTGGTCTACAAGTAGGAGATGTTTGTGTCTTTGAACTAATAAACAAGAAAGATTTGATTTTTAATGTTCATATTACCAAAAGGGACAGTTAA

Protein sequence

>MS.gene84508.t1

MKTSERTTSWNWPKGARAQEVALKFISNNPFFTILINPTHLAENRVCVPTLNGVIENKEKYVMLQIGKRSWNLKLLPYCEARNVRRLSAGWSLFARESGLQVGDVCVFELINKKDLIFNVHITKRDS