Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84515.t1 | AES70700.1 | 75.2 | 266 | 45 | 2 | 1 | 245 | 1 | 266 | 1.90E-105 | 392.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84515.t1 | Q8L3W1 | 31.2 | 154 | 98 | 2 | 12 | 157 | 6 | 159 | 2.9e-14 | 80.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84515.t1 | G7IY86 | 75.2 | 266 | 45 | 2 | 1 | 245 | 1 | 266 | 1.3e-105 | 392.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84515.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84515.t1 | MTR_3g061310 | 75.188 | 266 | 45 | 2 | 1 | 245 | 1 | 266 | 6.50e-142 | 399 |
| MS.gene84515.t1 | MTR_3g061320 | 67.568 | 259 | 65 | 2 | 1 | 242 | 1 | 257 | 1.71e-119 | 342 |
| MS.gene84515.t1 | MTR_3g061350 | 64.045 | 267 | 72 | 4 | 1 | 245 | 1 | 265 | 4.76e-115 | 331 |
| MS.gene84515.t1 | MTR_3g061340 | 65.789 | 266 | 59 | 5 | 1 | 245 | 1 | 255 | 2.49e-111 | 321 |
| MS.gene84515.t1 | MTR_3g061370 | 63.670 | 267 | 70 | 5 | 1 | 245 | 1 | 262 | 5.96e-108 | 313 |
| MS.gene84515.t1 | MTR_3g061330 | 65.217 | 253 | 64 | 5 | 1 | 231 | 1 | 251 | 2.30e-103 | 300 |
| MS.gene84515.t1 | MTR_3g061290 | 72.393 | 163 | 45 | 0 | 1 | 163 | 1 | 163 | 9.82e-82 | 243 |
| MS.gene84515.t1 | MTR_3g061220 | 67.939 | 131 | 28 | 2 | 1 | 131 | 1 | 117 | 3.96e-56 | 175 |
| MS.gene84515.t1 | MTR_7g050560 | 33.829 | 269 | 138 | 9 | 9 | 245 | 10 | 270 | 1.21e-38 | 137 |
| MS.gene84515.t1 | MTR_3g061300 | 66.000 | 100 | 32 | 1 | 146 | 245 | 7 | 104 | 1.58e-35 | 123 |
| MS.gene84515.t1 | MTR_8g103940 | 30.104 | 289 | 147 | 8 | 4 | 245 | 31 | 311 | 4.82e-34 | 128 |
| MS.gene84515.t1 | MTR_7g050710 | 30.851 | 282 | 146 | 9 | 9 | 245 | 10 | 287 | 1.01e-31 | 119 |
| MS.gene84515.t1 | MTR_3g098790 | 30.515 | 272 | 152 | 9 | 9 | 245 | 10 | 279 | 1.22e-30 | 116 |
| MS.gene84515.t1 | MTR_1g035640 | 30.116 | 259 | 149 | 5 | 12 | 245 | 9 | 260 | 2.38e-29 | 114 |
| MS.gene84515.t1 | MTR_7g050720 | 29.167 | 288 | 153 | 7 | 9 | 245 | 7 | 294 | 1.97e-27 | 107 |
| MS.gene84515.t1 | MTR_1g108780 | 28.782 | 271 | 137 | 8 | 21 | 245 | 10 | 270 | 2.13e-27 | 109 |
| MS.gene84515.t1 | MTR_7g050580 | 29.304 | 273 | 145 | 10 | 9 | 245 | 10 | 270 | 3.40e-27 | 106 |
| MS.gene84515.t1 | MTR_1g035460 | 26.374 | 273 | 141 | 5 | 26 | 245 | 2 | 267 | 5.06e-26 | 105 |
| MS.gene84515.t1 | MTR_7g050590 | 27.925 | 265 | 140 | 9 | 26 | 245 | 2 | 260 | 1.48e-25 | 102 |
| MS.gene84515.t1 | MTR_5g044670 | 25.735 | 272 | 160 | 7 | 12 | 245 | 16 | 283 | 7.85e-25 | 100 |
| MS.gene84515.t1 | MTR_5g070440 | 27.984 | 243 | 153 | 6 | 11 | 245 | 20 | 248 | 3.14e-24 | 98.2 |
| MS.gene84515.t1 | MTR_3g005480 | 31.414 | 191 | 109 | 3 | 11 | 193 | 20 | 196 | 1.07e-23 | 96.3 |
| MS.gene84515.t1 | MTR_1g035570 | 26.316 | 266 | 157 | 7 | 12 | 245 | 9 | 267 | 3.77e-23 | 97.1 |
| MS.gene84515.t1 | MTR_3g005490 | 27.459 | 244 | 144 | 5 | 11 | 245 | 20 | 239 | 1.06e-22 | 93.6 |
| MS.gene84515.t1 | MTR_3g005420 | 28.270 | 237 | 160 | 3 | 11 | 245 | 288 | 516 | 1.20e-22 | 96.7 |
| MS.gene84515.t1 | MTR_3g005420 | 27.426 | 237 | 133 | 9 | 11 | 241 | 39 | 242 | 2.41e-17 | 81.3 |
| MS.gene84515.t1 | MTR_4g068320 | 38.732 | 142 | 83 | 2 | 12 | 149 | 6 | 147 | 1.32e-22 | 95.9 |
| MS.gene84515.t1 | MTR_6g043890 | 28.881 | 277 | 152 | 10 | 10 | 245 | 13 | 285 | 2.57e-22 | 94.0 |
| MS.gene84515.t1 | MTR_4g119990 | 33.987 | 153 | 96 | 3 | 10 | 159 | 13 | 163 | 5.46e-22 | 93.6 |
| MS.gene84515.t1 | MTR_1g035620 | 26.378 | 254 | 166 | 8 | 9 | 243 | 6 | 257 | 1.01e-20 | 90.5 |
| MS.gene84515.t1 | MTR_1g035440 | 43.137 | 102 | 55 | 2 | 10 | 108 | 13 | 114 | 4.86e-20 | 86.3 |
| MS.gene84515.t1 | MTR_1g034240 | 40.741 | 108 | 62 | 1 | 12 | 117 | 7 | 114 | 9.57e-20 | 87.8 |
| MS.gene84515.t1 | MTR_3g005460 | 38.462 | 104 | 62 | 1 | 11 | 112 | 24 | 127 | 3.63e-19 | 86.3 |
| MS.gene84515.t1 | MTR_3g005460 | 27.027 | 259 | 163 | 7 | 1 | 245 | 251 | 497 | 3.85e-19 | 86.3 |
| MS.gene84515.t1 | MTR_1g035650 | 42.157 | 102 | 55 | 2 | 9 | 108 | 6 | 105 | 3.67e-19 | 82.8 |
| MS.gene84515.t1 | MTR_1g050845 | 26.070 | 257 | 155 | 8 | 9 | 245 | 6 | 247 | 3.73e-19 | 86.7 |
| MS.gene84515.t1 | MTR_7g050640 | 44.792 | 96 | 51 | 2 | 10 | 103 | 11 | 106 | 4.53e-19 | 80.5 |
| MS.gene84515.t1 | MTR_1g035510 | 28.571 | 224 | 124 | 7 | 26 | 216 | 2 | 222 | 1.09e-18 | 82.0 |
| MS.gene84515.t1 | MTR_3g005495 | 30.081 | 246 | 128 | 10 | 11 | 245 | 242 | 454 | 3.17e-18 | 83.6 |
| MS.gene84515.t1 | MTR_3g005495 | 39.773 | 88 | 53 | 0 | 25 | 112 | 28 | 115 | 2.47e-17 | 80.9 |
| MS.gene84515.t1 | MTR_1g033740 | 30.682 | 176 | 107 | 5 | 10 | 175 | 20 | 190 | 9.02e-18 | 79.0 |
| MS.gene84515.t1 | MTR_6g061070 | 36.364 | 143 | 86 | 3 | 10 | 150 | 16 | 155 | 9.59e-18 | 82.0 |
| MS.gene84515.t1 | MTR_1g035480 | 31.034 | 174 | 103 | 6 | 2 | 165 | 7 | 173 | 1.71e-17 | 77.8 |
| MS.gene84515.t1 | MTR_3g005420 | 27.426 | 237 | 133 | 9 | 11 | 241 | 20 | 223 | 2.66e-17 | 80.9 |
| MS.gene84515.t1 | MTR_3g005440 | 35.577 | 104 | 67 | 0 | 13 | 116 | 23 | 126 | 3.01e-17 | 80.5 |
| MS.gene84515.t1 | MTR_3g005440 | 32.317 | 164 | 103 | 4 | 11 | 171 | 241 | 399 | 1.22e-15 | 75.9 |
| MS.gene84515.t1 | MTR_1g035500 | 30.058 | 173 | 109 | 6 | 2 | 165 | 15 | 184 | 9.67e-15 | 70.5 |
| MS.gene84515.t1 | MTR_1g034210 | 37.037 | 108 | 64 | 2 | 12 | 117 | 7 | 112 | 2.43e-14 | 71.6 |
| MS.gene84515.t1 | MTR_1g034210 | 37.037 | 108 | 64 | 2 | 12 | 117 | 7 | 112 | 3.82e-14 | 71.2 |
| MS.gene84515.t1 | MTR_1g035520 | 30.366 | 191 | 108 | 6 | 4 | 193 | 67 | 233 | 6.72e-14 | 70.9 |
| MS.gene84515.t1 | MTR_1g035470 | 34.211 | 114 | 67 | 3 | 26 | 134 | 2 | 112 | 3.78e-13 | 65.1 |
| MS.gene84515.t1 | MTR_1g021360 | 21.933 | 269 | 177 | 5 | 10 | 245 | 182 | 450 | 1.38e-12 | 67.0 |
| MS.gene84515.t1 | MTR_1g021270 | 28.302 | 106 | 75 | 1 | 11 | 115 | 15 | 120 | 3.49e-12 | 65.9 |
| MS.gene84515.t1 | MTR_1g021380 | 22.297 | 296 | 167 | 8 | 10 | 245 | 20 | 312 | 3.13e-11 | 62.8 |
| MS.gene84515.t1 | MTR_1g021320 | 32.353 | 102 | 68 | 1 | 10 | 110 | 182 | 283 | 5.87e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84515.t1 | AT3G18990 | 31.169 | 154 | 98 | 2 | 12 | 157 | 6 | 159 | 8.27e-20 | 87.0 |
| MS.gene84515.t1 | AT3G18990 | 31.169 | 154 | 98 | 2 | 12 | 157 | 6 | 159 | 1.53e-19 | 86.7 |
| MS.gene84515.t1 | AT1G49475 | 37.500 | 120 | 71 | 3 | 12 | 129 | 34 | 151 | 4.59e-19 | 82.4 |
| MS.gene84515.t1 | AT4G01580 | 33.607 | 122 | 73 | 2 | 12 | 131 | 30 | 145 | 4.83e-19 | 82.4 |
| MS.gene84515.t1 | AT3G18960 | 37.374 | 99 | 60 | 1 | 12 | 108 | 30 | 128 | 2.28e-17 | 78.2 |
| MS.gene84515.t1 | AT3G18960 | 37.374 | 99 | 60 | 1 | 12 | 108 | 30 | 128 | 2.44e-17 | 77.8 |
| MS.gene84515.t1 | AT3G18960 | 38.095 | 84 | 52 | 0 | 25 | 108 | 8 | 91 | 2.38e-14 | 69.3 |
| MS.gene84515.t1 | AT4G33280 | 22.222 | 279 | 170 | 8 | 10 | 245 | 23 | 297 | 1.58e-11 | 63.5 |
Find 48 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCCTTGTAAACTTATT+TGG | 0.115340 | 3.1:-45683908 | None:intergenic |
| GTACCAAATATACATTTAAA+AGG | 0.208112 | 3.1:+45684646 | MS.gene84515:CDS |
| TGAGAACAAGGAGAAGAATT+TGG | 0.273366 | 3.1:+45684675 | MS.gene84515:CDS |
| AGGCTCCTGATGGCACTAAA+TGG | 0.303104 | 3.1:+45683963 | MS.gene84515:CDS |
| GCACTAAATGGAAAGTTTAC+TGG | 0.322375 | 3.1:+45683975 | MS.gene84515:CDS |
| CTCTTTAGAACATGGGTGTT+TGG | 0.338963 | 3.1:+45684057 | MS.gene84515:CDS |
| CGACTTGCTACCAGATGATT+AGG | 0.348755 | 3.1:-45684536 | None:intergenic |
| CCAGCCTTTGAAGATTAGAT+TGG | 0.362716 | 3.1:-45683670 | None:intergenic |
| AAGAATTTGGTACTTCAGAT+TGG | 0.383646 | 3.1:+45684688 | MS.gene84515:CDS |
| TACCAAATATACATTTAAAA+GGG | 0.385566 | 3.1:+45684647 | MS.gene84515:CDS |
| AATAAGTTTACAAGGAGATA+TGG | 0.388747 | 3.1:+45683911 | MS.gene84515:CDS |
| CCCTTGTTACGAGCATGATA+AGG | 0.433122 | 3.1:+45684738 | MS.gene84515:CDS |
| TGGTGAGATTTGGTTCGAAA+AGG | 0.433657 | 3.1:+45684009 | MS.gene84515:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3.1:-45683968 | None:intergenic |
| TCTTATACAACCTAATCATC+TGG | 0.452163 | 3.1:+45684526 | MS.gene84515:CDS |
| GTCAAATAAATCTAGAGCTC+AGG | 0.454366 | 3.1:+45684460 | MS.gene84515:CDS |
| AAGTTTGATGTACTAATACT+TGG | 0.456775 | 3.1:+45684106 | MS.gene84515:CDS |
| GCCTTTGAAGATTAGATTGG+AGG | 0.462449 | 3.1:-45683667 | None:intergenic |
| AGATTTGGTTCGAAAAGGGT+TGG | 0.480950 | 3.1:+45684014 | MS.gene84515:CDS |
| TCCACTTTCACTTGCAAACA+AGG | 0.482886 | 3.1:-45684785 | None:intergenic |
| CCAATCTAATCTTCAAAGGC+TGG | 0.485025 | 3.1:+45683670 | MS.gene84515:CDS |
| CCTTGTTACGAGCATGATAA+GGG | 0.487290 | 3.1:+45684739 | MS.gene84515:CDS |
| AAAAGGGGTTATTGAGAACA+AGG | 0.491715 | 3.1:+45684663 | MS.gene84515:CDS |
| GGTGAGATTTGGTTCGAAAA+GGG | 0.492301 | 3.1:+45684010 | MS.gene84515:CDS |
| AAGGGTCGTCGCCTTTCAGC+AGG | 0.493590 | 3.1:+45684757 | MS.gene84515:CDS |
| CCCTTATCATGCTCGTAACA+AGG | 0.501781 | 3.1:-45684739 | None:intergenic |
| TTCAGATTGGAGAAAGATCA+TGG | 0.505617 | 3.1:+45684701 | MS.gene84515:CDS |
| TTGGTGGTGTTTAAATATAG+AGG | 0.515843 | 3.1:+45684076 | MS.gene84515:CDS |
| AGACTACTAAAAGCTTGAAT+CGG | 0.527048 | 3.1:+45684438 | MS.gene84515:CDS |
| ATCAAATCCAGTGTTGATCA+AGG | 0.531326 | 3.1:+45683943 | MS.gene84515:CDS |
| TTTAGAACATGGGTGTTTGG+TGG | 0.534305 | 3.1:+45684060 | MS.gene84515:CDS |
| TCCTTGTTTGCAAGTGAAAG+TGG | 0.537639 | 3.1:+45684784 | MS.gene84515:CDS |
| GAAAATTACTCTTTAGAACA+TGG | 0.539820 | 3.1:+45684049 | MS.gene84515:CDS |
| AAGTATTAGTACATCAAACT+TGG | 0.551612 | 3.1:-45684104 | None:intergenic |
| TCCTCCAATCTAATCTTCAA+AGG | 0.560793 | 3.1:+45683666 | MS.gene84515:CDS |
| GTCGTCGCCTTTCAGCAGGT+TGG | 0.560837 | 3.1:+45684761 | MS.gene84515:CDS |
| ATACGCCATCATCCATGGCT+AGG | 0.570539 | 3.1:+45683606 | None:intergenic |
| TCAGGAGCCTTGATCAACAC+TGG | 0.571427 | 3.1:-45683950 | None:intergenic |
| AAATACCAAATAAGTTTACA+AGG | 0.573284 | 3.1:+45683903 | MS.gene84515:CDS |
| TGTAGCATTTCTCCTAGCCA+TGG | 0.575761 | 3.1:-45683618 | None:intergenic |
| ACCAAATATACATTTAAAAG+GGG | 0.584617 | 3.1:+45684648 | MS.gene84515:CDS |
| AAAATTACTCTTTAGAACAT+GGG | 0.587929 | 3.1:+45684050 | MS.gene84515:CDS |
| ACAAGGACCAACCTGCTGAA+AGG | 0.609803 | 3.1:-45684768 | None:intergenic |
| GTGTTGATCAAGGCTCCTGA+TGG | 0.612633 | 3.1:+45683953 | MS.gene84515:CDS |
| TTTACAAGGAGATATGGAGT+TGG | 0.615306 | 3.1:+45683917 | MS.gene84515:CDS |
| TCATCTGGTAGCAAGTCGGC+CGG | 0.615452 | 3.1:+45684541 | MS.gene84515:CDS |
| CCTTATCATGCTCGTAACAA+GGG | 0.618636 | 3.1:-45684738 | None:intergenic |
| CTAATCATCTGGTAGCAAGT+CGG | 0.666266 | 3.1:+45684537 | MS.gene84515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGATTTATTATATTT+GGG | + | chr3.1:45684325-45684344 | MS.gene84515:intron | 10.0% |
| !! | TACCAAATATACATTTAAAA+GGG | + | chr3.1:45684647-45684666 | MS.gene84515:CDS | 15.0% |
| !!! | AAAAAAAAAAAAAACCCTTT+TGG | - | chr3.1:45683872-45683891 | None:intergenic | 15.0% |
| !!! | GTTTGTTGATTTATTATATT+TGG | + | chr3.1:45684324-45684343 | MS.gene84515:intron | 15.0% |
| !! | AAATACCAAATAAGTTTACA+AGG | + | chr3.1:45683903-45683922 | MS.gene84515:CDS | 20.0% |
| !! | ACCAAATATACATTTAAAAG+GGG | + | chr3.1:45684648-45684667 | MS.gene84515:CDS | 20.0% |
| !! | GTACCAAATATACATTTAAA+AGG | + | chr3.1:45684646-45684665 | MS.gene84515:CDS | 20.0% |
| !! | TGTATAAGAATTGTGAAAAA+AGG | - | chr3.1:45684515-45684534 | None:intergenic | 20.0% |
| !!! | AAAATTACTCTTTAGAACAT+GGG | + | chr3.1:45684050-45684069 | MS.gene84515:CDS | 20.0% |
| ! | AAGTATTAGTACATCAAACT+TGG | - | chr3.1:45684107-45684126 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTACTAATACT+TGG | + | chr3.1:45684106-45684125 | MS.gene84515:CDS | 25.0% |
| ! | AATAAGTTTACAAGGAGATA+TGG | + | chr3.1:45683911-45683930 | MS.gene84515:CDS | 25.0% |
| ! | ATGATCTTGAAAAAATGGAT+GGG | - | chr3.1:45683647-45683666 | None:intergenic | 25.0% |
| ! | TAGCACTAGAAATTTGATTA+CGG | + | chr3.1:45683764-45683783 | MS.gene84515:intron | 25.0% |
| ! | TATCTCCTTGTAAACTTATT+TGG | - | chr3.1:45683911-45683930 | None:intergenic | 25.0% |
| !! | ACCCCTTTTAAATGTATATT+TGG | - | chr3.1:45684652-45684671 | None:intergenic | 25.0% |
| !!! | GAAAATTACTCTTTAGAACA+TGG | + | chr3.1:45684049-45684068 | MS.gene84515:CDS | 25.0% |
| !!! | TGACATGTTTTATTCTTAGA+AGG | + | chr3.1:45683813-45683832 | MS.gene84515:intron | 25.0% |
| AAAAAGTCAATGGTGAGATT+TGG | + | chr3.1:45683999-45684018 | MS.gene84515:CDS | 30.0% | |
| AAGAATTTGGTACTTCAGAT+TGG | + | chr3.1:45684688-45684707 | MS.gene84515:CDS | 30.0% | |
| AGACTACTAAAAGCTTGAAT+CGG | + | chr3.1:45684438-45684457 | MS.gene84515:CDS | 30.0% | |
| GATGATCTTGAAAAAATGGA+TGG | - | chr3.1:45683648-45683667 | None:intergenic | 30.0% | |
| GTTTACTGGAAAAAAGTCAA+TGG | + | chr3.1:45683989-45684008 | MS.gene84515:CDS | 30.0% | |
| TATATTCCACTCATATATGC+AGG | + | chr3.1:45684404-45684423 | MS.gene84515:intron | 30.0% | |
| TCTTATACAACCTAATCATC+TGG | + | chr3.1:45684526-45684545 | MS.gene84515:CDS | 30.0% | |
| TTGTTTGATGTTGACCAAAA+GGG | + | chr3.1:45683855-45683874 | MS.gene84515:intron | 30.0% | |
| TTTGGTCAACATCAAACAAA+AGG | - | chr3.1:45683854-45683873 | None:intergenic | 30.0% | |
| TTTGTTTGATGTTGACCAAA+AGG | + | chr3.1:45683854-45683873 | MS.gene84515:intron | 30.0% | |
| !! | ATCACAAGAGTACTAGAAAA+AGG | + | chr3.1:45684239-45684258 | MS.gene84515:intron | 30.0% |
| !! | TTGGTGGTGTTTAAATATAG+AGG | + | chr3.1:45684076-45684095 | MS.gene84515:CDS | 30.0% |
| AAAAGGGGTTATTGAGAACA+AGG | + | chr3.1:45684663-45684682 | MS.gene84515:CDS | 35.0% | |
| AATGTTGTGTTTGATCCTAC+CGG | - | chr3.1:45684563-45684582 | None:intergenic | 35.0% | |
| ATACCGCTAACATTGTTATG+TGG | - | chr3.1:45684286-45684305 | None:intergenic | 35.0% | |
| GCACTAAATGGAAAGTTTAC+TGG | + | chr3.1:45683975-45683994 | MS.gene84515:CDS | 35.0% | |
| GGAGGATGATCTTGAAAAAA+TGG | - | chr3.1:45683652-45683671 | None:intergenic | 35.0% | |
| TAAGCATGCATAATGCATTC+TGG | + | chr3.1:45683693-45683712 | MS.gene84515:intron | 35.0% | |
| TCCTCCAATCTAATCTTCAA+AGG | + | chr3.1:45683666-45683685 | MS.gene84515:CDS | 35.0% | |
| TGAGAACAAGGAGAAGAATT+TGG | + | chr3.1:45684675-45684694 | MS.gene84515:CDS | 35.0% | |
| TGTGGTCGAGGATAAAATAA+TGG | - | chr3.1:45684268-45684287 | None:intergenic | 35.0% | |
| TTCAGATTGGAGAAAGATCA+TGG | + | chr3.1:45684701-45684720 | MS.gene84515:CDS | 35.0% | |
| TTTACAAGGAGATATGGAGT+TGG | + | chr3.1:45683917-45683936 | MS.gene84515:CDS | 35.0% | |
| ! | GTCAAATAAATCTAGAGCTC+AGG | + | chr3.1:45684460-45684479 | MS.gene84515:CDS | 35.0% |
| !! | ATCAAATCCAGTGTTGATCA+AGG | + | chr3.1:45683943-45683962 | MS.gene84515:CDS | 35.0% |
| ACATCACCTGCATATATGAG+TGG | - | chr3.1:45684413-45684432 | None:intergenic | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | - | chr3.1:45683971-45683990 | None:intergenic | 40.0% | |
| CCAATCTAATCTTCAAAGGC+TGG | + | chr3.1:45683670-45683689 | MS.gene84515:CDS | 40.0% | |
| CCTTATCATGCTCGTAACAA+GGG | - | chr3.1:45684741-45684760 | None:intergenic | 40.0% | |
| CCTTGTTACGAGCATGATAA+GGG | + | chr3.1:45684739-45684758 | MS.gene84515:CDS | 40.0% | |
| CGACCACATAACAATGTTAG+CGG | + | chr3.1:45684280-45684299 | MS.gene84515:intron | 40.0% | |
| CTAACATTGTTATGTGGTCG+AGG | - | chr3.1:45684280-45684299 | None:intergenic | 40.0% | |
| CTAATCATCTGGTAGCAAGT+CGG | + | chr3.1:45684537-45684556 | MS.gene84515:CDS | 40.0% | |
| TCCACTTTCACTTGCAAACA+AGG | - | chr3.1:45684788-45684807 | None:intergenic | 40.0% | |
| ! | AGATTTGGTTCGAAAAGGGT+TGG | + | chr3.1:45684014-45684033 | MS.gene84515:CDS | 40.0% |
| ! | CCAGCCTTTGAAGATTAGAT+TGG | - | chr3.1:45683673-45683692 | None:intergenic | 40.0% |
| ! | GCCTTTGAAGATTAGATTGG+AGG | - | chr3.1:45683670-45683689 | None:intergenic | 40.0% |
| ! | GGTGAGATTTGGTTCGAAAA+GGG | + | chr3.1:45684010-45684029 | MS.gene84515:CDS | 40.0% |
| ! | TCCTTGTTTGCAAGTGAAAG+TGG | + | chr3.1:45684784-45684803 | MS.gene84515:CDS | 40.0% |
| ! | TGGTGAGATTTGGTTCGAAA+AGG | + | chr3.1:45684009-45684028 | MS.gene84515:CDS | 40.0% |
| ! | TTTAGAACATGGGTGTTTGG+TGG | + | chr3.1:45684060-45684079 | MS.gene84515:CDS | 40.0% |
| !! | CTCTTTAGAACATGGGTGTT+TGG | + | chr3.1:45684057-45684076 | MS.gene84515:CDS | 40.0% |
| CCCTTATCATGCTCGTAACA+AGG | - | chr3.1:45684742-45684761 | None:intergenic | 45.0% | |
| CCCTTGTTACGAGCATGATA+AGG | + | chr3.1:45684738-45684757 | MS.gene84515:CDS | 45.0% | |
| !! | CGACTTGCTACCAGATGATT+AGG | - | chr3.1:45684539-45684558 | None:intergenic | 45.0% |
| ACAAGGACCAACCTGCTGAA+AGG | - | chr3.1:45684771-45684790 | None:intergenic | 50.0% | |
| AGGCTCCTGATGGCACTAAA+TGG | + | chr3.1:45683963-45683982 | MS.gene84515:CDS | 50.0% | |
| TCAGGAGCCTTGATCAACAC+TGG | - | chr3.1:45683953-45683972 | None:intergenic | 50.0% | |
| ! | GTGTTGATCAAGGCTCCTGA+TGG | + | chr3.1:45683953-45683972 | MS.gene84515:CDS | 50.0% |
| TCATCTGGTAGCAAGTCGGC+CGG | + | chr3.1:45684541-45684560 | MS.gene84515:CDS | 55.0% | |
| AAGGGTCGTCGCCTTTCAGC+AGG | + | chr3.1:45684757-45684776 | MS.gene84515:CDS | 60.0% | |
| GTCGTCGCCTTTCAGCAGGT+TGG | + | chr3.1:45684761-45684780 | MS.gene84515:CDS | 60.0% | |
| CTGGTAGCAAGTCGGCCGGT+AGG | + | chr3.1:45684545-45684564 | MS.gene84515:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45683620 | 45684822 | 45683620 | ID=MS.gene84515 |
| chr3.1 | mRNA | 45683620 | 45684822 | 45683620 | ID=MS.gene84515.t1;Parent=MS.gene84515 |
| chr3.1 | exon | 45683620 | 45683691 | 45683620 | ID=MS.gene84515.t1.exon1;Parent=MS.gene84515.t1 |
| chr3.1 | CDS | 45683620 | 45683691 | 45683620 | ID=cds.MS.gene84515.t1;Parent=MS.gene84515.t1 |
| chr3.1 | exon | 45683902 | 45684247 | 45683902 | ID=MS.gene84515.t1.exon2;Parent=MS.gene84515.t1 |
| chr3.1 | CDS | 45683902 | 45684247 | 45683902 | ID=cds.MS.gene84515.t1;Parent=MS.gene84515.t1 |
| chr3.1 | exon | 45684426 | 45684562 | 45684426 | ID=MS.gene84515.t1.exon3;Parent=MS.gene84515.t1 |
| chr3.1 | CDS | 45684426 | 45684562 | 45684426 | ID=cds.MS.gene84515.t1;Parent=MS.gene84515.t1 |
| chr3.1 | exon | 45684643 | 45684822 | 45684643 | ID=MS.gene84515.t1.exon4;Parent=MS.gene84515.t1 |
| chr3.1 | CDS | 45684643 | 45684822 | 45684643 | ID=cds.MS.gene84515.t1;Parent=MS.gene84515.t1 |
| Gene Sequence |
| Protein sequence |
