Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84539.t1 | AES70718.2 | 96.7 | 333 | 11 | 0 | 1 | 333 | 17 | 349 | 4.90E-165 | 590.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84539.t1 | Q9LXV5 | 53.3 | 272 | 119 | 6 | 5 | 272 | 1 | 268 | 6.2e-60 | 232.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84539.t1 | G7IYA4 | 96.7 | 333 | 11 | 0 | 1 | 333 | 17 | 349 | 3.5e-165 | 590.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene84539.t1 | TF | NF-YA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84539.t1 | MTR_3g061510 | 98.198 | 333 | 6 | 0 | 1 | 333 | 17 | 349 | 0.0 | 667 |
MS.gene84539.t1 | MTR_3g061510 | 98.176 | 329 | 6 | 0 | 5 | 333 | 1 | 329 | 0.0 | 660 |
MS.gene84539.t1 | MTR_8g037270 | 46.262 | 214 | 83 | 6 | 24 | 230 | 21 | 209 | 2.07e-46 | 159 |
MS.gene84539.t1 | MTR_2g041090 | 60.577 | 104 | 36 | 3 | 132 | 230 | 30 | 133 | 1.52e-35 | 129 |
MS.gene84539.t1 | MTR_2g030170 | 56.731 | 104 | 40 | 1 | 148 | 246 | 81 | 184 | 2.26e-32 | 120 |
MS.gene84539.t1 | MTR_8g019540 | 54.717 | 106 | 44 | 2 | 128 | 230 | 116 | 220 | 3.79e-32 | 122 |
MS.gene84539.t1 | MTR_2g099490 | 54.545 | 121 | 50 | 3 | 116 | 233 | 114 | 232 | 2.09e-31 | 120 |
MS.gene84539.t1 | MTR_2g030170 | 59.551 | 89 | 36 | 0 | 158 | 246 | 129 | 217 | 1.28e-30 | 116 |
MS.gene84539.t1 | MTR_7g106450 | 41.579 | 190 | 88 | 8 | 108 | 289 | 106 | 280 | 2.63e-30 | 117 |
MS.gene84539.t1 | MTR_2g099490 | 45.775 | 142 | 62 | 2 | 116 | 242 | 114 | 255 | 3.91e-29 | 115 |
MS.gene84539.t1 | MTR_1g056530 | 50.427 | 117 | 44 | 4 | 128 | 241 | 126 | 231 | 1.78e-27 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene84539.t1 | AT5G12840 | 55.859 | 256 | 105 | 6 | 20 | 272 | 17 | 267 | 8.07e-86 | 259 |
MS.gene84539.t1 | AT5G12840 | 55.859 | 256 | 105 | 6 | 20 | 272 | 17 | 267 | 8.07e-86 | 259 |
MS.gene84539.t1 | AT5G12840 | 55.212 | 259 | 103 | 7 | 20 | 272 | 17 | 268 | 2.12e-84 | 256 |
MS.gene84539.t1 | AT5G12840 | 55.212 | 259 | 103 | 7 | 20 | 272 | 17 | 268 | 2.12e-84 | 256 |
MS.gene84539.t1 | AT5G12840 | 55.212 | 259 | 103 | 7 | 20 | 272 | 17 | 268 | 2.12e-84 | 256 |
MS.gene84539.t1 | AT3G20910 | 59.361 | 219 | 59 | 7 | 120 | 333 | 110 | 303 | 6.13e-74 | 231 |
MS.gene84539.t1 | AT1G30500 | 59.091 | 110 | 40 | 3 | 128 | 235 | 52 | 158 | 3.73e-33 | 121 |
MS.gene84539.t1 | AT1G30500 | 56.757 | 111 | 45 | 2 | 128 | 235 | 52 | 162 | 4.01e-32 | 119 |
MS.gene84539.t1 | AT1G72830 | 57.143 | 98 | 39 | 2 | 136 | 230 | 137 | 234 | 3.74e-31 | 120 |
MS.gene84539.t1 | AT2G34720 | 45.714 | 140 | 70 | 2 | 129 | 262 | 48 | 187 | 5.40e-31 | 116 |
MS.gene84539.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 135 | 262 | 19 | 152 | 5.38e-30 | 112 |
MS.gene84539.t1 | AT2G34720 | 47.015 | 134 | 65 | 2 | 135 | 262 | 19 | 152 | 5.38e-30 | 112 |
MS.gene84539.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 136 | 230 | 135 | 227 | 7.17e-30 | 116 |
MS.gene84539.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 136 | 230 | 135 | 227 | 7.17e-30 | 116 |
MS.gene84539.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 136 | 230 | 135 | 227 | 7.17e-30 | 116 |
MS.gene84539.t1 | AT1G17590 | 57.732 | 97 | 35 | 3 | 136 | 230 | 135 | 227 | 7.17e-30 | 116 |
MS.gene84539.t1 | AT1G72830 | 56.566 | 99 | 39 | 3 | 136 | 230 | 137 | 235 | 2.03e-29 | 115 |
MS.gene84539.t1 | AT1G54160 | 43.609 | 133 | 65 | 3 | 103 | 230 | 106 | 233 | 9.20e-29 | 113 |
MS.gene84539.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 139 | 230 | 132 | 226 | 5.97e-27 | 108 |
MS.gene84539.t1 | AT3G14020 | 54.167 | 96 | 39 | 3 | 139 | 230 | 132 | 226 | 5.97e-27 | 108 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 5 | 100 | 1.17e-21 | 90.9 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 5 | 100 | 1.17e-21 | 90.9 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 51 | 146 | 5.22e-21 | 90.1 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 100 | 195 | 5.54e-21 | 91.3 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 100 | 195 | 5.54e-21 | 91.3 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 100 | 195 | 5.54e-21 | 91.3 |
MS.gene84539.t1 | AT5G06510 | 45.872 | 109 | 43 | 4 | 134 | 239 | 100 | 195 | 5.54e-21 | 91.3 |
MS.gene84539.t1 | AT3G05690 | 44.928 | 138 | 55 | 6 | 118 | 246 | 88 | 213 | 8.00e-21 | 91.3 |
MS.gene84539.t1 | AT3G05690 | 44.928 | 138 | 55 | 6 | 118 | 246 | 125 | 250 | 1.42e-20 | 91.3 |
MS.gene84539.t1 | AT1G72830 | 48.421 | 95 | 27 | 2 | 136 | 230 | 137 | 209 | 6.76e-19 | 86.3 |
Find 108 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTATCAGGATCCATATTA+TGG | 0.185298 | 3.1:-46161232 | MS.gene84539:CDS |
CCTCGGTTGATTTGCAGTTT+CGG | 0.272870 | 3.1:+46161996 | None:intergenic |
TTCCTCATTCATCTCACTAT+TGG | 0.285307 | 3.1:+46161813 | None:intergenic |
TTGATTTGCAGTTTCGGACT+TGG | 0.313960 | 3.1:+46162002 | None:intergenic |
CTCAAGGGGCAAAGGCATTC+TGG | 0.314340 | 3.1:+46161021 | None:intergenic |
GTGGAAGAAGGGGACTGTTC+AGG | 0.315135 | 3.1:-46159796 | MS.gene84539:CDS |
GCATGAGGCACTCCTATAAA+AGG | 0.333358 | 3.1:+46161043 | None:intergenic |
TATGCAATCTTCAAGGTATC+AGG | 0.338770 | 3.1:-46159827 | MS.gene84539:CDS |
TTCTAAAGCACCTGATTGAT+TGG | 0.345684 | 3.1:+46161753 | None:intergenic |
TGTTTAGCGTTCACATAAAC+AGG | 0.347626 | 3.1:+46160986 | None:intergenic |
GCAAGAGGATCAAACGAAAA+TGG | 0.354776 | 3.1:-46159880 | MS.gene84539:CDS |
CAAAGACTGGCCTTCCTCAT+TGG | 0.355087 | 3.1:+46161837 | None:intergenic |
TCGCATGTTGGGAGAATTCC+AGG | 0.360834 | 3.1:+46159909 | None:intergenic |
CCAGACATTGCTTGCGCTAC+AGG | 0.362694 | 3.1:+46161904 | None:intergenic |
TTCTTCTTGATAGGAAATTA+CGG | 0.368800 | 3.1:-46161596 | MS.gene84539:intron |
GCATACCATTGTTGTTGTTA+TGG | 0.371144 | 3.1:+46159845 | None:intergenic |
ATGTGCTACAAATCCTTATC+AGG | 0.378434 | 3.1:-46161245 | MS.gene84539:CDS |
CTTGCATCTTGTCGCATGTT+GGG | 0.394811 | 3.1:+46159898 | None:intergenic |
CTTATCAGGATCCATATTAT+GGG | 0.407754 | 3.1:-46161231 | MS.gene84539:CDS |
TCGCAATCAATTAGTTCATC+TGG | 0.408092 | 3.1:-46159964 | MS.gene84539:CDS |
GAAAACTGATGGTGAGGCCT+CGG | 0.419006 | 3.1:-46160019 | MS.gene84539:CDS |
GAGGCCTCGGGAAAGGATAA+TGG | 0.429841 | 3.1:-46160006 | MS.gene84539:CDS |
ACAATCAAGAGAGGATGAAT+TGG | 0.445592 | 3.1:+46161879 | None:intergenic |
TCCTCTCTTGATTGTCCCAA+TGG | 0.445841 | 3.1:-46161871 | MS.gene84539:CDS |
CCATAATATGGATCCTGATA+AGG | 0.451848 | 3.1:+46161232 | None:intergenic |
CTTCAGACTCTGCGGAAACC+TGG | 0.454407 | 3.1:-46159927 | MS.gene84539:CDS |
TCTAAAGCACCTGATTGATT+GGG | 0.457401 | 3.1:+46161754 | None:intergenic |
CCTCTGCGATGCCTCGTTCG+AGG | 0.460703 | 3.1:+46159753 | None:intergenic |
TCTTGCATCTTGTCGCATGT+TGG | 0.462937 | 3.1:+46159897 | None:intergenic |
TGATTTGCAGTTTCGGACTT+GGG | 0.466356 | 3.1:+46162003 | None:intergenic |
TGGAAGAAGGGGACTGTTCA+GGG | 0.467131 | 3.1:-46159795 | MS.gene84539:CDS |
TTGAGAAGGGCAAGAGGCAC+CGG | 0.467176 | 3.1:-46160057 | MS.gene84539:CDS |
CCTGTAGCGCAAGCAATGTC+TGG | 0.468318 | 3.1:-46161904 | MS.gene84539:CDS |
CCTGCTGCTCCCAATCAATC+AGG | 0.469165 | 3.1:-46161763 | MS.gene84539:intron |
CCTGATTGATTGGGAGCAGC+AGG | 0.471231 | 3.1:+46161763 | None:intergenic |
AATGCCTTTGCCCCTTGAGA+TGG | 0.476507 | 3.1:-46161017 | MS.gene84539:CDS |
GTCTTCGCCTCAGAATTCCT+TGG | 0.480874 | 3.1:+46160960 | None:intergenic |
ATTGATTGCGACGACAAGAC+TGG | 0.480972 | 3.1:+46159976 | None:intergenic |
ACTCCTCAGCTGGAACTTGT+TGG | 0.498120 | 3.1:-46161509 | MS.gene84539:CDS |
TCGGGAAAGGATAATGGCTC+TGG | 0.498937 | 3.1:-46160000 | MS.gene84539:CDS |
ATTGGATTCTGAATCACCAT+TGG | 0.502864 | 3.1:+46161855 | None:intergenic |
CAGGGTGAAAGAGTGGAAGA+AGG | 0.503255 | 3.1:-46159808 | MS.gene84539:CDS |
TTGGATTCTGAATCACCATT+GGG | 0.505994 | 3.1:+46161856 | None:intergenic |
TTTCTTTGCAAATCGTCCTC+CGG | 0.509061 | 3.1:+46160038 | None:intergenic |
AAAACTGATGGTGAGGCCTC+GGG | 0.514204 | 3.1:-46160018 | MS.gene84539:CDS |
GAACCTTGGTGGCGTGGTGT+TGG | 0.516801 | 3.1:-46161934 | MS.gene84539:CDS |
CCTCACACAGACTCCTCAGC+TGG | 0.517659 | 3.1:-46161519 | MS.gene84539:CDS |
GAAGCTCATAAAATCTAGAA+AGG | 0.519482 | 3.1:-46160909 | MS.gene84539:intron |
GTGCTAAAGCAGAGCTTGAA+AGG | 0.520912 | 3.1:-46160931 | MS.gene84539:CDS |
ACCATTGTTGTTGTTATGGT+AGG | 0.521132 | 3.1:+46159849 | None:intergenic |
AGGGTGAAAGAGTGGAAGAA+GGG | 0.525419 | 3.1:-46159807 | MS.gene84539:CDS |
ACAATGGTATGCAATCTTCA+AGG | 0.528717 | 3.1:-46159834 | MS.gene84539:CDS |
TGATGGTGAGGCCTCGGGAA+AGG | 0.531610 | 3.1:-46160013 | MS.gene84539:CDS |
GTGGTGTTTATTCTGAACCT+TGG | 0.535143 | 3.1:-46161948 | MS.gene84539:CDS |
CAGGTTCTTGAGCCATCTCA+AGG | 0.541180 | 3.1:+46161005 | None:intergenic |
AGCTTATCCTCACCAGCCGT+TGG | 0.544838 | 3.1:-46161197 | MS.gene84539:intron |
TCTCACTATTGGACAAAGAC+TGG | 0.550556 | 3.1:+46161824 | None:intergenic |
GACATCAGCATGCTTTGAGA+AGG | 0.559068 | 3.1:-46160071 | MS.gene84539:CDS |
TGAGCCATCTCAAGGGGCAA+AGG | 0.560137 | 3.1:+46161013 | None:intergenic |
TGTCTAGATTCATGAAGGTA+TGG | 0.563561 | 3.1:+46160090 | None:intergenic |
CAGGTTTCCGCAGAGTCTGA+AGG | 0.567519 | 3.1:+46159928 | None:intergenic |
GATCCTCATTCCTTTCAGCC+CGG | 0.568473 | 3.1:-46161970 | MS.gene84539:CDS |
ATAAACACCACCGGGCTGAA+AGG | 0.570819 | 3.1:+46161960 | None:intergenic |
TCACATACCAACGGCTGGTG+AGG | 0.579630 | 3.1:+46161190 | None:intergenic |
AAGGTATCAGGGTGAAAGAG+TGG | 0.579884 | 3.1:-46159815 | MS.gene84539:CDS |
GTGTTTATTCTGAACCTTGG+TGG | 0.581264 | 3.1:-46161945 | MS.gene84539:CDS |
AGGTTCAGAATAAACACCAC+CGG | 0.582494 | 3.1:+46161951 | None:intergenic |
GGAAGATGATGATGCTGCTA+AGG | 0.583652 | 3.1:-46161794 | MS.gene84539:CDS |
TAATGTCACATACCAACGGC+TGG | 0.588332 | 3.1:+46161185 | None:intergenic |
TATTCTGAACCTTGGTGGCG+TGG | 0.589853 | 3.1:-46161940 | MS.gene84539:CDS |
TGCAAAGAAAACTGATGGTG+AGG | 0.591393 | 3.1:-46160025 | MS.gene84539:CDS |
ATGCAATCTTCAAGGTATCA+GGG | 0.599536 | 3.1:-46159826 | MS.gene84539:CDS |
TTATCAGGATCCATATTATG+GGG | 0.600718 | 3.1:-46161230 | MS.gene84539:CDS |
GGATCAAACGAAAATGGCGG+TGG | 0.600744 | 3.1:-46159874 | MS.gene84539:CDS |
AGGTTCTTGAGCCATCTCAA+GGG | 0.605218 | 3.1:+46161006 | None:intergenic |
CCTCATTCCTTTCAGCCCGG+TGG | 0.605967 | 3.1:-46161967 | MS.gene84539:CDS |
CATGCTTTGAGAAGGGCAAG+AGG | 0.607747 | 3.1:-46160063 | MS.gene84539:CDS |
GGAAATTACGGACAAGGACA+AGG | 0.608890 | 3.1:-46161584 | MS.gene84539:CDS |
GGTTCTTGAGCCATCTCAAG+GGG | 0.609159 | 3.1:+46161007 | None:intergenic |
GTCCAATAGTGAGATGAATG+AGG | 0.611764 | 3.1:-46161815 | MS.gene84539:CDS |
GATTCAGAATCCAATGAGGA+AGG | 0.616324 | 3.1:-46161847 | MS.gene84539:CDS |
GCTGATGTCTAGATTCATGA+AGG | 0.617283 | 3.1:+46160085 | None:intergenic |
ACATCAGCATGCTTTGAGAA+GGG | 0.618856 | 3.1:-46160070 | MS.gene84539:CDS |
GACTGTTCAGGGCAGCTACG+TGG | 0.623934 | 3.1:-46159784 | MS.gene84539:CDS |
TCCTACCATAACAACAACAA+TGG | 0.624469 | 3.1:-46159850 | MS.gene84539:CDS |
CGATTTGCAAAGAAAACTGA+TGG | 0.624607 | 3.1:-46160030 | MS.gene84539:CDS |
CCACCGGGCTGAAAGGAATG+AGG | 0.626610 | 3.1:+46161967 | None:intergenic |
GGCAAAGGCATTCTGGCATG+AGG | 0.634023 | 3.1:+46161028 | None:intergenic |
TTGATAGGAAATTACGGACA+AGG | 0.634677 | 3.1:-46161590 | MS.gene84539:intron |
AGAAGGGCAAGAGGCACCGG+AGG | 0.637214 | 3.1:-46160054 | MS.gene84539:CDS |
GGGTGAAAGAGTGGAAGAAG+GGG | 0.642943 | 3.1:-46159806 | MS.gene84539:CDS |
CCAGCTGAGGAGTCTGTGTG+AGG | 0.649225 | 3.1:+46161519 | None:intergenic |
GGTTCAGAATAAACACCACC+GGG | 0.650774 | 3.1:+46161952 | None:intergenic |
AACAATACCAAGGAATTCTG+AGG | 0.651910 | 3.1:-46160967 | MS.gene84539:CDS |
AGAGCCATTATCCTTTCCCG+AGG | 0.653284 | 3.1:+46160002 | None:intergenic |
ACCATTGGGACAATCAAGAG+AGG | 0.663692 | 3.1:+46161870 | None:intergenic |
TGAGGCACTCCTATAAAAGG+AGG | 0.667807 | 3.1:+46161046 | None:intergenic |
TGGAAGCATCTCCTCGAACG+AGG | 0.669556 | 3.1:-46159764 | MS.gene84539:CDS |
AAGGAATGAGGATCTGACCT+CGG | 0.671701 | 3.1:+46161979 | None:intergenic |
TGACCAACAAGTTCCAGCTG+AGG | 0.675734 | 3.1:+46161506 | None:intergenic |
TATCAGGATCCATATTATGG+GGG | 0.690554 | 3.1:-46161229 | MS.gene84539:CDS |
GTGAACGCTAAACAATACCA+AGG | 0.697540 | 3.1:-46160977 | MS.gene84539:CDS |
AACATGCGACAAGATGCAAG+AGG | 0.706089 | 3.1:-46159895 | MS.gene84539:CDS |
TATCCAACACCACGCCACCA+AGG | 0.707510 | 3.1:+46161931 | None:intergenic |
TGGTGATTCAGAATCCAATG+AGG | 0.715370 | 3.1:-46161851 | MS.gene84539:CDS |
AGAGGATCAAACGAAAATGG+CGG | 0.717637 | 3.1:-46159877 | MS.gene84539:CDS |
CCTCGAACGAGGCATCGCAG+AGG | 0.718093 | 3.1:-46159753 | MS.gene84539:CDS |
CCGAAACTGCAAATCAACCG+AGG | 0.722272 | 3.1:-46161996 | MS.gene84539:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTACTAACAATTAAATA+GGG | - | chr3.1:46160037-46160056 | MS.gene84539:CDS | 10.0% |
!! | TTATTTACTAACAATTAAAT+AGG | - | chr3.1:46160036-46160055 | MS.gene84539:CDS | 10.0% |
!!! | TTTTACATTTTTTTTTTTGA+AGG | + | chr3.1:46161243-46161262 | None:intergenic | 10.0% |
!! | ATTTACTAACAATTAAATAG+GGG | - | chr3.1:46160038-46160057 | MS.gene84539:CDS | 15.0% |
!! | GTTTCTAAATTCTAATATAT+AGG | - | chr3.1:46161094-46161113 | MS.gene84539:intron | 15.0% |
!! | TAAAAAATAACAAAAAGCTT+AGG | + | chr3.1:46160294-46160313 | None:intergenic | 15.0% |
!!! | ATTTTTTTTTTCTTCTTGAT+AGG | - | chr3.1:46160151-46160170 | MS.gene84539:intron | 15.0% |
!! | ACTGCTTAAAAAAAAATCAA+AGG | + | chr3.1:46161134-46161153 | None:intergenic | 20.0% |
!! | ATCAAGAAAATAGAACAAAA+TGG | + | chr3.1:46160623-46160642 | None:intergenic | 20.0% |
!! | CATCTAATTTAATGTTTAGA+TGG | - | chr3.1:46161306-46161325 | MS.gene84539:intron | 20.0% |
!! | TCTTGATTAATGGTAATATT+TGG | - | chr3.1:46160636-46160655 | MS.gene84539:intron | 20.0% |
!!! | ACCAAATACTATTGATTTAA+AGG | - | chr3.1:46160114-46160133 | MS.gene84539:intron | 20.0% |
!!! | GGATATTTGTCTTTTTTATA+TGG | - | chr3.1:46160920-46160939 | MS.gene84539:CDS | 20.0% |
!!! | TCAAATCAGTAATTTTATTC+TGG | - | chr3.1:46160363-46160382 | MS.gene84539:intron | 20.0% |
!!! | TGTTCTATTTTCTTGATTAA+TGG | - | chr3.1:46160626-46160645 | MS.gene84539:intron | 20.0% |
!!! | TTACTACATAAACTTTTTGT+GGG | - | chr3.1:46161487-46161506 | MS.gene84539:intron | 20.0% |
!!! | TTTACTACATAAACTTTTTG+TGG | - | chr3.1:46161486-46161505 | MS.gene84539:intron | 20.0% |
! | AAAAAAAATCAAAGGCTCTA+TGG | + | chr3.1:46161126-46161145 | None:intergenic | 25.0% |
! | AAAAAAGACAAATATCCCAA+AGG | + | chr3.1:46160917-46160936 | None:intergenic | 25.0% |
! | AAAAGAATTGGAAGAATACT+AGG | + | chr3.1:46160482-46160501 | None:intergenic | 25.0% |
! | ATTCGTGCATATAATTTCAA+TGG | - | chr3.1:46160403-46160422 | MS.gene84539:intron | 25.0% |
! | GCCTTTAAATCAATAGTATT+TGG | + | chr3.1:46160118-46160137 | None:intergenic | 25.0% |
! | TTCTTCTTGATAGGAAATTA+CGG | - | chr3.1:46160160-46160179 | MS.gene84539:intron | 25.0% |
!! | ATGATATTTTCCTTTCCTTT+GGG | - | chr3.1:46160899-46160918 | MS.gene84539:intron | 25.0% |
!! | TATGATATTTTCCTTTCCTT+TGG | - | chr3.1:46160898-46160917 | MS.gene84539:intron | 25.0% |
!!! | TGTCTTTTTTATATGGAGAA+AGG | - | chr3.1:46160927-46160946 | MS.gene84539:CDS | 25.0% |
AGATTAATGTCACATACCAA+CGG | + | chr3.1:46160578-46160597 | None:intergenic | 30.0% | |
ATAACAAAAAGCTTAGGCAA+AGG | + | chr3.1:46160288-46160307 | None:intergenic | 30.0% | |
CCATTATTATGCTGTATTGA+CGG | - | chr3.1:46161168-46161187 | MS.gene84539:intron | 30.0% | |
CTTAACAACTTGAAAGCAAT+TGG | + | chr3.1:46160323-46160342 | None:intergenic | 30.0% | |
CTTATCAGGATCCATATTAT+GGG | - | chr3.1:46160525-46160544 | MS.gene84539:intron | 30.0% | |
GAAGCTCATAAAATCTAGAA+AGG | - | chr3.1:46160847-46160866 | MS.gene84539:intron | 30.0% | |
GTCGTATGAAATTGTGTAAA+AGG | + | chr3.1:46160963-46160982 | None:intergenic | 30.0% | |
TAGGGGAAAAATAAACAGAT+TGG | - | chr3.1:46160055-46160074 | MS.gene84539:CDS | 30.0% | |
TCCATATAAAGACTAAGCAA+CGG | + | chr3.1:46160985-46161004 | None:intergenic | 30.0% | |
TGCACAAATGTCAAGAAAAA+TGG | - | chr3.1:46161436-46161455 | MS.gene84539:intron | 30.0% | |
TTATCAGGATCCATATTATG+GGG | - | chr3.1:46160526-46160545 | MS.gene84539:intron | 30.0% | |
! | TTAATCTGTTACTTGCTTCA+AGG | - | chr3.1:46160591-46160610 | MS.gene84539:intron | 30.0% |
! | TTGTTGCTTGTTTCAAAAGT+GGG | + | chr3.1:46161286-46161305 | None:intergenic | 30.0% |
AACAATACCAAGGAATTCTG+AGG | - | chr3.1:46160789-46160808 | MS.gene84539:intron | 35.0% | |
ACAATCAAGAGAGGATGAAT+TGG | + | chr3.1:46159880-46159899 | None:intergenic | 35.0% | |
ACAATGGTATGCAATCTTCA+AGG | - | chr3.1:46161922-46161941 | MS.gene84539:CDS | 35.0% | |
ACTACATACACTGGCAAAAT+TGG | + | chr3.1:46161520-46161539 | None:intergenic | 35.0% | |
AGACAAATATCCCAAAGGAA+AGG | + | chr3.1:46160912-46160931 | None:intergenic | 35.0% | |
ATGAATGTGACTACATACAC+TGG | + | chr3.1:46161529-46161548 | None:intergenic | 35.0% | |
ATGTGCTACAAATCCTTATC+AGG | - | chr3.1:46160511-46160530 | MS.gene84539:intron | 35.0% | |
ATTGGATTCTGAATCACCAT+TGG | + | chr3.1:46159904-46159923 | None:intergenic | 35.0% | |
CCATAATATGGATCCTGATA+AGG | + | chr3.1:46160527-46160546 | None:intergenic | 35.0% | |
CCGTCAATACAGCATAATAA+TGG | + | chr3.1:46161171-46161190 | None:intergenic | 35.0% | |
CCTTATCAGGATCCATATTA+TGG | - | chr3.1:46160524-46160543 | MS.gene84539:intron | 35.0% | |
CGATTTGCAAAGAAAACTGA+TGG | - | chr3.1:46161726-46161745 | MS.gene84539:intron | 35.0% | |
GGACTCATGCAAGTAAAAAA+TGG | + | chr3.1:46161594-46161613 | None:intergenic | 35.0% | |
GTCTCACTTGAAACATATTC+TGG | + | chr3.1:46161615-46161634 | None:intergenic | 35.0% | |
TATCAGGATCCATATTATGG+GGG | - | chr3.1:46160527-46160546 | MS.gene84539:intron | 35.0% | |
TATCCTTGTCTGCAAGAATT+AGG | - | chr3.1:46161365-46161384 | MS.gene84539:intron | 35.0% | |
TCCTACCATAACAACAACAA+TGG | - | chr3.1:46161906-46161925 | MS.gene84539:CDS | 35.0% | |
TCGCAATCAATTAGTTCATC+TGG | - | chr3.1:46161792-46161811 | MS.gene84539:CDS | 35.0% | |
TGTCTAGATTCATGAAGGTA+TGG | + | chr3.1:46161669-46161688 | None:intergenic | 35.0% | |
TGTTTAGCGTTCACATAAAC+AGG | + | chr3.1:46160773-46160792 | None:intergenic | 35.0% | |
TTCCTCATTCATCTCACTAT+TGG | + | chr3.1:46159946-46159965 | None:intergenic | 35.0% | |
TTGATAGGAAATTACGGACA+AGG | - | chr3.1:46160166-46160185 | MS.gene84539:intron | 35.0% | |
TTGGATTCTGAATCACCATT+GGG | + | chr3.1:46159903-46159922 | None:intergenic | 35.0% | |
! | ACCATTGTTGTTGTTATGGT+AGG | + | chr3.1:46161910-46161929 | None:intergenic | 35.0% |
! | ACCGTTGCTTAGTCTTTATA+TGG | - | chr3.1:46160981-46161000 | MS.gene84539:CDS | 35.0% |
! | ATGCAATCTTCAAGGTATCA+GGG | - | chr3.1:46161930-46161949 | MS.gene84539:CDS | 35.0% |
! | GCATACCATTGTTGTTGTTA+TGG | + | chr3.1:46161914-46161933 | None:intergenic | 35.0% |
! | GTTGTTGCTTGTTTCAAAAG+TGG | + | chr3.1:46161287-46161306 | None:intergenic | 35.0% |
! | TAGGGATATCCTCCTTTTAT+AGG | - | chr3.1:46160701-46160720 | MS.gene84539:intron | 35.0% |
! | TATGCAATCTTCAAGGTATC+AGG | - | chr3.1:46161929-46161948 | MS.gene84539:CDS | 35.0% |
! | TCTAAAGCACCTGATTGATT+GGG | + | chr3.1:46160005-46160024 | None:intergenic | 35.0% |
! | TCTTCCAATTCTTTTGATGC+AGG | - | chr3.1:46160487-46160506 | MS.gene84539:intron | 35.0% |
!! | TTCTAAAGCACCTGATTGAT+TGG | + | chr3.1:46160006-46160025 | None:intergenic | 35.0% |
AGAGGATCAAACGAAAATGG+CGG | - | chr3.1:46161879-46161898 | MS.gene84539:CDS | 40.0% | |
AGCTTGTAGTTGCATGCATT+TGG | - | chr3.1:46160443-46160462 | MS.gene84539:intron | 40.0% | |
AGGTTCAGAATAAACACCAC+CGG | + | chr3.1:46159808-46159827 | None:intergenic | 40.0% | |
ATACACTGGCAAAATTGGAG+TGG | + | chr3.1:46161515-46161534 | None:intergenic | 40.0% | |
CATGCCTGCATCAAAAGAAT+TGG | + | chr3.1:46160494-46160513 | None:intergenic | 40.0% | |
GATTCAGAATCCAATGAGGA+AGG | - | chr3.1:46159909-46159928 | MS.gene84539:CDS | 40.0% | |
GCAAGAGGATCAAACGAAAA+TGG | - | chr3.1:46161876-46161895 | MS.gene84539:CDS | 40.0% | |
GCTGATGTCTAGATTCATGA+AGG | + | chr3.1:46161674-46161693 | None:intergenic | 40.0% | |
GTCCAATAGTGAGATGAATG+AGG | - | chr3.1:46159941-46159960 | MS.gene84539:CDS | 40.0% | |
GTGAACGCTAAACAATACCA+AGG | - | chr3.1:46160779-46160798 | MS.gene84539:intron | 40.0% | |
GTGGTGTTTATTCTGAACCT+TGG | - | chr3.1:46159808-46159827 | MS.gene84539:CDS | 40.0% | |
GTGTTTATTCTGAACCTTGG+TGG | - | chr3.1:46159811-46159830 | MS.gene84539:CDS | 40.0% | |
TATATGCGCTGTTGTCTGTA+AGG | - | chr3.1:46161058-46161077 | MS.gene84539:intron | 40.0% | |
TCTCACTATTGGACAAAGAC+TGG | + | chr3.1:46159935-46159954 | None:intergenic | 40.0% | |
TGGTGATTCAGAATCCAATG+AGG | - | chr3.1:46159905-46159924 | MS.gene84539:CDS | 40.0% | |
TGTTTAGATGGATCTGCTGT+TGG | - | chr3.1:46161318-46161337 | MS.gene84539:intron | 40.0% | |
TTTCTTTGCAAATCGTCCTC+CGG | + | chr3.1:46161721-46161740 | None:intergenic | 40.0% | |
! | TGATTTGCAGTTTCGGACTT+GGG | + | chr3.1:46159756-46159775 | None:intergenic | 40.0% |
! | TGCAAAGAAAACTGATGGTG+AGG | - | chr3.1:46161731-46161750 | MS.gene84539:intron | 40.0% |
!! | ACATCAGCATGCTTTGAGAA+GGG | - | chr3.1:46161686-46161705 | MS.gene84539:intron | 40.0% |
!! | TTGATTTGCAGTTTCGGACT+TGG | + | chr3.1:46159757-46159776 | None:intergenic | 40.0% |
AACATGCGACAAGATGCAAG+AGG | - | chr3.1:46161861-46161880 | MS.gene84539:CDS | 45.0% | |
AAGCTCTCAGATGCAGATAG+TGG | - | chr3.1:46161399-46161418 | MS.gene84539:intron | 45.0% | |
AAGGAATGAGGATCTGACCT+CGG | + | chr3.1:46159780-46159799 | None:intergenic | 45.0% | |
ACCATTGGGACAATCAAGAG+AGG | + | chr3.1:46159889-46159908 | None:intergenic | 45.0% | |
AGGGTGAAAGAGTGGAAGAA+GGG | - | chr3.1:46161949-46161968 | MS.gene84539:CDS | 45.0% | |
AGGTTCTTGAGCCATCTCAA+GGG | + | chr3.1:46160753-46160772 | None:intergenic | 45.0% | |
ATTGATTGCGACGACAAGAC+TGG | + | chr3.1:46161783-46161802 | None:intergenic | 45.0% | |
CAGCCTAATTCTTGCAGACA+AGG | + | chr3.1:46161371-46161390 | None:intergenic | 45.0% | |
CTTGCATCTTGTCGCATGTT+GGG | + | chr3.1:46161861-46161880 | None:intergenic | 45.0% | |
GGAAATTACGGACAAGGACA+AGG | - | chr3.1:46160172-46160191 | MS.gene84539:intron | 45.0% | |
GGTTCAGAATAAACACCACC+GGG | + | chr3.1:46159807-46159826 | None:intergenic | 45.0% | |
GTAGTTGCATGCATTTGGAC+TGG | - | chr3.1:46160448-46160467 | MS.gene84539:intron | 45.0% | |
GTGCTAAAGCAGAGCTTGAA+AGG | - | chr3.1:46160825-46160844 | MS.gene84539:intron | 45.0% | |
TAATGTCACATACCAACGGC+TGG | + | chr3.1:46160574-46160593 | None:intergenic | 45.0% | |
TCCTCTCTTGATTGTCCCAA+TGG | - | chr3.1:46159885-46159904 | MS.gene84539:CDS | 45.0% | |
TCTTGCATCTTGTCGCATGT+TGG | + | chr3.1:46161862-46161881 | None:intergenic | 45.0% | |
TTAGATGGATCTGCTGTTGG+AGG | - | chr3.1:46161321-46161340 | MS.gene84539:intron | 45.0% | |
! | AAGGTATCAGGGTGAAAGAG+TGG | - | chr3.1:46161941-46161960 | MS.gene84539:CDS | 45.0% |
! | ACTTTTGCCTTCAGACTCTG+CGG | - | chr3.1:46161821-46161840 | MS.gene84539:CDS | 45.0% |
! | GCATGAGGCACTCCTATAAA+AGG | + | chr3.1:46160716-46160735 | None:intergenic | 45.0% |
! | GGAAGATGATGATGCTGCTA+AGG | - | chr3.1:46159962-46159981 | MS.gene84539:CDS | 45.0% |
! | TCCATATTATGGGGGCATGA+TGG | - | chr3.1:46160535-46160554 | MS.gene84539:intron | 45.0% |
! | TGAGGCACTCCTATAAAAGG+AGG | + | chr3.1:46160713-46160732 | None:intergenic | 45.0% |
! | TGCATGCATTTGGACTGGAT+GGG | - | chr3.1:46160453-46160472 | MS.gene84539:intron | 45.0% |
! | TTGCATGCATTTGGACTGGA+TGG | - | chr3.1:46160452-46160471 | MS.gene84539:intron | 45.0% |
!! | AGGCGTCTTGCTATTCAGTA+GGG | - | chr3.1:46162023-46162042 | MS.gene84539:CDS | 45.0% |
!! | CCTCGGTTGATTTGCAGTTT+CGG | + | chr3.1:46159763-46159782 | None:intergenic | 45.0% |
!! | GACATCAGCATGCTTTGAGA+AGG | - | chr3.1:46161685-46161704 | MS.gene84539:intron | 45.0% |
!! | ATAGTAAAAAAAAAAAAATA+TGG | + | chr3.1:46160681-46160700 | None:intergenic | 5.0% |
!!! | ATTTTTTTTTTTTTACTATT+AGG | - | chr3.1:46160682-46160701 | MS.gene84539:intron | 5.0% |
!!! | TTTTTTTTTTTTTACTATTA+GGG | - | chr3.1:46160683-46160702 | MS.gene84539:intron | 5.0% |
AATGCCTTTGCCCCTTGAGA+TGG | - | chr3.1:46160739-46160758 | MS.gene84539:intron | 50.0% | |
ACTCCTCAGCTGGAACTTGT+TGG | - | chr3.1:46160247-46160266 | MS.gene84539:intron | 50.0% | |
AGAGCCATTATCCTTTCCCG+AGG | + | chr3.1:46161757-46161776 | None:intergenic | 50.0% | |
ATAAACACCACCGGGCTGAA+AGG | + | chr3.1:46159799-46159818 | None:intergenic | 50.0% | |
CAGGGTGAAAGAGTGGAAGA+AGG | - | chr3.1:46161948-46161967 | MS.gene84539:CDS | 50.0% | |
CAGGTTCTTGAGCCATCTCA+AGG | + | chr3.1:46160754-46160773 | None:intergenic | 50.0% | |
CCGAAACTGCAAATCAACCG+AGG | - | chr3.1:46159760-46159779 | MS.gene84539:CDS | 50.0% | |
GATCCTCATTCCTTTCAGCC+CGG | - | chr3.1:46159786-46159805 | MS.gene84539:CDS | 50.0% | |
GCCATCATGCCCCCATAATA+TGG | + | chr3.1:46160539-46160558 | None:intergenic | 50.0% | |
GGATCAAACGAAAATGGCGG+TGG | - | chr3.1:46161882-46161901 | MS.gene84539:CDS | 50.0% | |
GGGTGAAAGAGTGGAAGAAG+GGG | - | chr3.1:46161950-46161969 | MS.gene84539:CDS | 50.0% | |
GGTTCTTGAGCCATCTCAAG+GGG | + | chr3.1:46160752-46160771 | None:intergenic | 50.0% | |
GTCTTCGCCTCAGAATTCCT+TGG | + | chr3.1:46160799-46160818 | None:intergenic | 50.0% | |
TCGCATGTTGGGAGAATTCC+AGG | + | chr3.1:46161850-46161869 | None:intergenic | 50.0% | |
TGACCAACAAGTTCCAGCTG+AGG | + | chr3.1:46160253-46160272 | None:intergenic | 50.0% | |
TGGAAGAAGGGGACTGTTCA+GGG | - | chr3.1:46161961-46161980 | MS.gene84539:CDS | 50.0% | |
TGGAGGCTCATGGAAGTTAG+AGG | - | chr3.1:46161338-46161357 | MS.gene84539:intron | 50.0% | |
! | AAAACTGATGGTGAGGCCTC+GGG | - | chr3.1:46161738-46161757 | MS.gene84539:intron | 50.0% |
! | GAAAACTGATGGTGAGGCCT+CGG | - | chr3.1:46161737-46161756 | MS.gene84539:intron | 50.0% |
! | TCGGGAAAGGATAATGGCTC+TGG | - | chr3.1:46161756-46161775 | MS.gene84539:intron | 50.0% |
!! | CAAAGACTGGCCTTCCTCAT+TGG | + | chr3.1:46159922-46159941 | None:intergenic | 50.0% |
!! | CATGCTTTGAGAAGGGCAAG+AGG | - | chr3.1:46161693-46161712 | MS.gene84539:intron | 50.0% |
!! | GAGGCGTCTTGCTATTCAGT+AGG | - | chr3.1:46162022-46162041 | MS.gene84539:CDS | 50.0% |
!! | TATTCTGAACCTTGGTGGCG+TGG | - | chr3.1:46159816-46159835 | MS.gene84539:CDS | 50.0% |
AGCTTATCCTCACCAGCCGT+TGG | - | chr3.1:46160559-46160578 | MS.gene84539:intron | 55.0% | |
CAGGTTTCCGCAGAGTCTGA+AGG | + | chr3.1:46161831-46161850 | None:intergenic | 55.0% | |
CCAGACATTGCTTGCGCTAC+AGG | + | chr3.1:46159855-46159874 | None:intergenic | 55.0% | |
CCTGATTGATTGGGAGCAGC+AGG | + | chr3.1:46159996-46160015 | None:intergenic | 55.0% | |
CCTGCTGCTCCCAATCAATC+AGG | - | chr3.1:46159993-46160012 | MS.gene84539:CDS | 55.0% | |
CCTGTAGCGCAAGCAATGTC+TGG | - | chr3.1:46159852-46159871 | MS.gene84539:CDS | 55.0% | |
CTTCAGACTCTGCGGAAACC+TGG | - | chr3.1:46161829-46161848 | MS.gene84539:CDS | 55.0% | |
GAGGCCTCGGGAAAGGATAA+TGG | - | chr3.1:46161750-46161769 | MS.gene84539:intron | 55.0% | |
GATCTGCTGTTGGAGGCTCA+TGG | - | chr3.1:46161328-46161347 | MS.gene84539:intron | 55.0% | |
GTGGAAGAAGGGGACTGTTC+AGG | - | chr3.1:46161960-46161979 | MS.gene84539:CDS | 55.0% | |
TATCCAACACCACGCCACCA+AGG | + | chr3.1:46159828-46159847 | None:intergenic | 55.0% | |
TCACATACCAACGGCTGGTG+AGG | + | chr3.1:46160569-46160588 | None:intergenic | 55.0% | |
TGAGCCATCTCAAGGGGCAA+AGG | + | chr3.1:46160746-46160765 | None:intergenic | 55.0% | |
! | TTGAGAAGGGCAAGAGGCAC+CGG | - | chr3.1:46161699-46161718 | MS.gene84539:intron | 55.0% |
!! | CTCAAGGGGCAAAGGCATTC+TGG | + | chr3.1:46160738-46160757 | None:intergenic | 55.0% |
!! | GGCAAAGGCATTCTGGCATG+AGG | + | chr3.1:46160731-46160750 | None:intergenic | 55.0% |
!! | TGGAAGCATCTCCTCGAACG+AGG | - | chr3.1:46161992-46162011 | MS.gene84539:CDS | 55.0% |
CCACCGGGCTGAAAGGAATG+AGG | + | chr3.1:46159792-46159811 | None:intergenic | 60.0% | |
CCAGCTGAGGAGTCTGTGTG+AGG | + | chr3.1:46160240-46160259 | None:intergenic | 60.0% | |
CCTCACACAGACTCCTCAGC+TGG | - | chr3.1:46160237-46160256 | MS.gene84539:intron | 60.0% | |
CCTCATTCCTTTCAGCCCGG+TGG | - | chr3.1:46159789-46159808 | MS.gene84539:CDS | 60.0% | |
GACTGTTCAGGGCAGCTACG+TGG | - | chr3.1:46161972-46161991 | MS.gene84539:CDS | 60.0% | |
! | TGATGGTGAGGCCTCGGGAA+AGG | - | chr3.1:46161743-46161762 | MS.gene84539:intron | 60.0% |
!! | GAACCTTGGTGGCGTGGTGT+TGG | - | chr3.1:46159822-46159841 | MS.gene84539:CDS | 60.0% |
CCTCTGCGATGCCTCGTTCG+AGG | + | chr3.1:46162006-46162025 | None:intergenic | 65.0% | |
!! | AGAAGGGCAAGAGGCACCGG+AGG | - | chr3.1:46161702-46161721 | MS.gene84539:intron | 65.0% |
!! | CCTCGAACGAGGCATCGCAG+AGG | - | chr3.1:46162003-46162022 | MS.gene84539:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 46159735 | 46162043 | 46159735 | ID=MS.gene84539 |
chr3.1 | mRNA | 46159735 | 46162043 | 46159735 | ID=MS.gene84539.t1;Parent=MS.gene84539 |
chr3.1 | exon | 46161764 | 46162043 | 46161764 | ID=MS.gene84539.t1.exon1;Parent=MS.gene84539.t1 |
chr3.1 | CDS | 46161764 | 46162043 | 46161764 | ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1 |
chr3.1 | exon | 46161499 | 46161605 | 46161499 | ID=MS.gene84539.t1.exon2;Parent=MS.gene84539.t1 |
chr3.1 | CDS | 46161499 | 46161605 | 46161499 | ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1 |
chr3.1 | exon | 46161198 | 46161269 | 46161198 | ID=MS.gene84539.t1.exon3;Parent=MS.gene84539.t1 |
chr3.1 | CDS | 46161198 | 46161269 | 46161198 | ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1 |
chr3.1 | exon | 46160910 | 46161074 | 46160910 | ID=MS.gene84539.t1.exon4;Parent=MS.gene84539.t1 |
chr3.1 | CDS | 46160910 | 46161074 | 46160910 | ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1 |
chr3.1 | exon | 46159735 | 46160112 | 46159735 | ID=MS.gene84539.t1.exon5;Parent=MS.gene84539.t1 |
chr3.1 | CDS | 46159735 | 46160112 | 46159735 | ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1 |
Gene Sequence |
Protein sequence |