AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84539


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84539.t1 MTR_3g061510 98.198 333 6 0 1 333 17 349 0.0 667
MS.gene84539.t1 MTR_3g061510 98.176 329 6 0 5 333 1 329 0.0 660
MS.gene84539.t1 MTR_8g037270 46.262 214 83 6 24 230 21 209 2.07e-46 159
MS.gene84539.t1 MTR_2g041090 60.577 104 36 3 132 230 30 133 1.52e-35 129
MS.gene84539.t1 MTR_2g030170 56.731 104 40 1 148 246 81 184 2.26e-32 120
MS.gene84539.t1 MTR_8g019540 54.717 106 44 2 128 230 116 220 3.79e-32 122
MS.gene84539.t1 MTR_2g099490 54.545 121 50 3 116 233 114 232 2.09e-31 120
MS.gene84539.t1 MTR_2g030170 59.551 89 36 0 158 246 129 217 1.28e-30 116
MS.gene84539.t1 MTR_7g106450 41.579 190 88 8 108 289 106 280 2.63e-30 117
MS.gene84539.t1 MTR_2g099490 45.775 142 62 2 116 242 114 255 3.91e-29 115
MS.gene84539.t1 MTR_1g056530 50.427 117 44 4 128 241 126 231 1.78e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84539.t1 AT5G12840 55.859 256 105 6 20 272 17 267 8.07e-86 259
MS.gene84539.t1 AT5G12840 55.859 256 105 6 20 272 17 267 8.07e-86 259
MS.gene84539.t1 AT5G12840 55.212 259 103 7 20 272 17 268 2.12e-84 256
MS.gene84539.t1 AT5G12840 55.212 259 103 7 20 272 17 268 2.12e-84 256
MS.gene84539.t1 AT5G12840 55.212 259 103 7 20 272 17 268 2.12e-84 256
MS.gene84539.t1 AT3G20910 59.361 219 59 7 120 333 110 303 6.13e-74 231
MS.gene84539.t1 AT1G30500 59.091 110 40 3 128 235 52 158 3.73e-33 121
MS.gene84539.t1 AT1G30500 56.757 111 45 2 128 235 52 162 4.01e-32 119
MS.gene84539.t1 AT1G72830 57.143 98 39 2 136 230 137 234 3.74e-31 120
MS.gene84539.t1 AT2G34720 45.714 140 70 2 129 262 48 187 5.40e-31 116
MS.gene84539.t1 AT2G34720 47.015 134 65 2 135 262 19 152 5.38e-30 112
MS.gene84539.t1 AT2G34720 47.015 134 65 2 135 262 19 152 5.38e-30 112
MS.gene84539.t1 AT1G17590 57.732 97 35 3 136 230 135 227 7.17e-30 116
MS.gene84539.t1 AT1G17590 57.732 97 35 3 136 230 135 227 7.17e-30 116
MS.gene84539.t1 AT1G17590 57.732 97 35 3 136 230 135 227 7.17e-30 116
MS.gene84539.t1 AT1G17590 57.732 97 35 3 136 230 135 227 7.17e-30 116
MS.gene84539.t1 AT1G72830 56.566 99 39 3 136 230 137 235 2.03e-29 115
MS.gene84539.t1 AT1G54160 43.609 133 65 3 103 230 106 233 9.20e-29 113
MS.gene84539.t1 AT3G14020 54.167 96 39 3 139 230 132 226 5.97e-27 108
MS.gene84539.t1 AT3G14020 54.167 96 39 3 139 230 132 226 5.97e-27 108
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 5 100 1.17e-21 90.9
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 5 100 1.17e-21 90.9
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 51 146 5.22e-21 90.1
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 100 195 5.54e-21 91.3
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 100 195 5.54e-21 91.3
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 100 195 5.54e-21 91.3
MS.gene84539.t1 AT5G06510 45.872 109 43 4 134 239 100 195 5.54e-21 91.3
MS.gene84539.t1 AT3G05690 44.928 138 55 6 118 246 88 213 8.00e-21 91.3
MS.gene84539.t1 AT3G05690 44.928 138 55 6 118 246 125 250 1.42e-20 91.3
MS.gene84539.t1 AT1G72830 48.421 95 27 2 136 230 137 209 6.76e-19 86.3

Find 108 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATCAGGATCCATATTA+TGG 0.185298 3.1:-46161232 MS.gene84539:CDS
CCTCGGTTGATTTGCAGTTT+CGG 0.272870 3.1:+46161996 None:intergenic
TTCCTCATTCATCTCACTAT+TGG 0.285307 3.1:+46161813 None:intergenic
TTGATTTGCAGTTTCGGACT+TGG 0.313960 3.1:+46162002 None:intergenic
CTCAAGGGGCAAAGGCATTC+TGG 0.314340 3.1:+46161021 None:intergenic
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3.1:-46159796 MS.gene84539:CDS
GCATGAGGCACTCCTATAAA+AGG 0.333358 3.1:+46161043 None:intergenic
TATGCAATCTTCAAGGTATC+AGG 0.338770 3.1:-46159827 MS.gene84539:CDS
TTCTAAAGCACCTGATTGAT+TGG 0.345684 3.1:+46161753 None:intergenic
TGTTTAGCGTTCACATAAAC+AGG 0.347626 3.1:+46160986 None:intergenic
GCAAGAGGATCAAACGAAAA+TGG 0.354776 3.1:-46159880 MS.gene84539:CDS
CAAAGACTGGCCTTCCTCAT+TGG 0.355087 3.1:+46161837 None:intergenic
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3.1:+46159909 None:intergenic
CCAGACATTGCTTGCGCTAC+AGG 0.362694 3.1:+46161904 None:intergenic
TTCTTCTTGATAGGAAATTA+CGG 0.368800 3.1:-46161596 MS.gene84539:intron
GCATACCATTGTTGTTGTTA+TGG 0.371144 3.1:+46159845 None:intergenic
ATGTGCTACAAATCCTTATC+AGG 0.378434 3.1:-46161245 MS.gene84539:CDS
CTTGCATCTTGTCGCATGTT+GGG 0.394811 3.1:+46159898 None:intergenic
CTTATCAGGATCCATATTAT+GGG 0.407754 3.1:-46161231 MS.gene84539:CDS
TCGCAATCAATTAGTTCATC+TGG 0.408092 3.1:-46159964 MS.gene84539:CDS
GAAAACTGATGGTGAGGCCT+CGG 0.419006 3.1:-46160019 MS.gene84539:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.429841 3.1:-46160006 MS.gene84539:CDS
ACAATCAAGAGAGGATGAAT+TGG 0.445592 3.1:+46161879 None:intergenic
TCCTCTCTTGATTGTCCCAA+TGG 0.445841 3.1:-46161871 MS.gene84539:CDS
CCATAATATGGATCCTGATA+AGG 0.451848 3.1:+46161232 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3.1:-46159927 MS.gene84539:CDS
TCTAAAGCACCTGATTGATT+GGG 0.457401 3.1:+46161754 None:intergenic
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3.1:+46159753 None:intergenic
TCTTGCATCTTGTCGCATGT+TGG 0.462937 3.1:+46159897 None:intergenic
TGATTTGCAGTTTCGGACTT+GGG 0.466356 3.1:+46162003 None:intergenic
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3.1:-46159795 MS.gene84539:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3.1:-46160057 MS.gene84539:CDS
CCTGTAGCGCAAGCAATGTC+TGG 0.468318 3.1:-46161904 MS.gene84539:CDS
CCTGCTGCTCCCAATCAATC+AGG 0.469165 3.1:-46161763 MS.gene84539:intron
CCTGATTGATTGGGAGCAGC+AGG 0.471231 3.1:+46161763 None:intergenic
AATGCCTTTGCCCCTTGAGA+TGG 0.476507 3.1:-46161017 MS.gene84539:CDS
GTCTTCGCCTCAGAATTCCT+TGG 0.480874 3.1:+46160960 None:intergenic
ATTGATTGCGACGACAAGAC+TGG 0.480972 3.1:+46159976 None:intergenic
ACTCCTCAGCTGGAACTTGT+TGG 0.498120 3.1:-46161509 MS.gene84539:CDS
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3.1:-46160000 MS.gene84539:CDS
ATTGGATTCTGAATCACCAT+TGG 0.502864 3.1:+46161855 None:intergenic
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3.1:-46159808 MS.gene84539:CDS
TTGGATTCTGAATCACCATT+GGG 0.505994 3.1:+46161856 None:intergenic
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3.1:+46160038 None:intergenic
AAAACTGATGGTGAGGCCTC+GGG 0.514204 3.1:-46160018 MS.gene84539:CDS
GAACCTTGGTGGCGTGGTGT+TGG 0.516801 3.1:-46161934 MS.gene84539:CDS
CCTCACACAGACTCCTCAGC+TGG 0.517659 3.1:-46161519 MS.gene84539:CDS
GAAGCTCATAAAATCTAGAA+AGG 0.519482 3.1:-46160909 MS.gene84539:intron
GTGCTAAAGCAGAGCTTGAA+AGG 0.520912 3.1:-46160931 MS.gene84539:CDS
ACCATTGTTGTTGTTATGGT+AGG 0.521132 3.1:+46159849 None:intergenic
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3.1:-46159807 MS.gene84539:CDS
ACAATGGTATGCAATCTTCA+AGG 0.528717 3.1:-46159834 MS.gene84539:CDS
TGATGGTGAGGCCTCGGGAA+AGG 0.531610 3.1:-46160013 MS.gene84539:CDS
GTGGTGTTTATTCTGAACCT+TGG 0.535143 3.1:-46161948 MS.gene84539:CDS
CAGGTTCTTGAGCCATCTCA+AGG 0.541180 3.1:+46161005 None:intergenic
AGCTTATCCTCACCAGCCGT+TGG 0.544838 3.1:-46161197 MS.gene84539:intron
TCTCACTATTGGACAAAGAC+TGG 0.550556 3.1:+46161824 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3.1:-46160071 MS.gene84539:CDS
TGAGCCATCTCAAGGGGCAA+AGG 0.560137 3.1:+46161013 None:intergenic
TGTCTAGATTCATGAAGGTA+TGG 0.563561 3.1:+46160090 None:intergenic
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3.1:+46159928 None:intergenic
GATCCTCATTCCTTTCAGCC+CGG 0.568473 3.1:-46161970 MS.gene84539:CDS
ATAAACACCACCGGGCTGAA+AGG 0.570819 3.1:+46161960 None:intergenic
TCACATACCAACGGCTGGTG+AGG 0.579630 3.1:+46161190 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3.1:-46159815 MS.gene84539:CDS
GTGTTTATTCTGAACCTTGG+TGG 0.581264 3.1:-46161945 MS.gene84539:CDS
AGGTTCAGAATAAACACCAC+CGG 0.582494 3.1:+46161951 None:intergenic
GGAAGATGATGATGCTGCTA+AGG 0.583652 3.1:-46161794 MS.gene84539:CDS
TAATGTCACATACCAACGGC+TGG 0.588332 3.1:+46161185 None:intergenic
TATTCTGAACCTTGGTGGCG+TGG 0.589853 3.1:-46161940 MS.gene84539:CDS
TGCAAAGAAAACTGATGGTG+AGG 0.591393 3.1:-46160025 MS.gene84539:CDS
ATGCAATCTTCAAGGTATCA+GGG 0.599536 3.1:-46159826 MS.gene84539:CDS
TTATCAGGATCCATATTATG+GGG 0.600718 3.1:-46161230 MS.gene84539:CDS
GGATCAAACGAAAATGGCGG+TGG 0.600744 3.1:-46159874 MS.gene84539:CDS
AGGTTCTTGAGCCATCTCAA+GGG 0.605218 3.1:+46161006 None:intergenic
CCTCATTCCTTTCAGCCCGG+TGG 0.605967 3.1:-46161967 MS.gene84539:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3.1:-46160063 MS.gene84539:CDS
GGAAATTACGGACAAGGACA+AGG 0.608890 3.1:-46161584 MS.gene84539:CDS
GGTTCTTGAGCCATCTCAAG+GGG 0.609159 3.1:+46161007 None:intergenic
GTCCAATAGTGAGATGAATG+AGG 0.611764 3.1:-46161815 MS.gene84539:CDS
GATTCAGAATCCAATGAGGA+AGG 0.616324 3.1:-46161847 MS.gene84539:CDS
GCTGATGTCTAGATTCATGA+AGG 0.617283 3.1:+46160085 None:intergenic
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3.1:-46160070 MS.gene84539:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3.1:-46159784 MS.gene84539:CDS
TCCTACCATAACAACAACAA+TGG 0.624469 3.1:-46159850 MS.gene84539:CDS
CGATTTGCAAAGAAAACTGA+TGG 0.624607 3.1:-46160030 MS.gene84539:CDS
CCACCGGGCTGAAAGGAATG+AGG 0.626610 3.1:+46161967 None:intergenic
GGCAAAGGCATTCTGGCATG+AGG 0.634023 3.1:+46161028 None:intergenic
TTGATAGGAAATTACGGACA+AGG 0.634677 3.1:-46161590 MS.gene84539:intron
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3.1:-46160054 MS.gene84539:CDS
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3.1:-46159806 MS.gene84539:CDS
CCAGCTGAGGAGTCTGTGTG+AGG 0.649225 3.1:+46161519 None:intergenic
GGTTCAGAATAAACACCACC+GGG 0.650774 3.1:+46161952 None:intergenic
AACAATACCAAGGAATTCTG+AGG 0.651910 3.1:-46160967 MS.gene84539:CDS
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3.1:+46160002 None:intergenic
ACCATTGGGACAATCAAGAG+AGG 0.663692 3.1:+46161870 None:intergenic
TGAGGCACTCCTATAAAAGG+AGG 0.667807 3.1:+46161046 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3.1:-46159764 MS.gene84539:CDS
AAGGAATGAGGATCTGACCT+CGG 0.671701 3.1:+46161979 None:intergenic
TGACCAACAAGTTCCAGCTG+AGG 0.675734 3.1:+46161506 None:intergenic
TATCAGGATCCATATTATGG+GGG 0.690554 3.1:-46161229 MS.gene84539:CDS
GTGAACGCTAAACAATACCA+AGG 0.697540 3.1:-46160977 MS.gene84539:CDS
AACATGCGACAAGATGCAAG+AGG 0.706089 3.1:-46159895 MS.gene84539:CDS
TATCCAACACCACGCCACCA+AGG 0.707510 3.1:+46161931 None:intergenic
TGGTGATTCAGAATCCAATG+AGG 0.715370 3.1:-46161851 MS.gene84539:CDS
AGAGGATCAAACGAAAATGG+CGG 0.717637 3.1:-46159877 MS.gene84539:CDS
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3.1:-46159753 MS.gene84539:CDS
CCGAAACTGCAAATCAACCG+AGG 0.722272 3.1:-46161996 MS.gene84539:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTACTAACAATTAAATA+GGG - chr3.1:46160037-46160056 MS.gene84539:CDS 10.0%
!! TTATTTACTAACAATTAAAT+AGG - chr3.1:46160036-46160055 MS.gene84539:CDS 10.0%
!!! TTTTACATTTTTTTTTTTGA+AGG + chr3.1:46161243-46161262 None:intergenic 10.0%
!! ATTTACTAACAATTAAATAG+GGG - chr3.1:46160038-46160057 MS.gene84539:CDS 15.0%
!! GTTTCTAAATTCTAATATAT+AGG - chr3.1:46161094-46161113 MS.gene84539:intron 15.0%
!! TAAAAAATAACAAAAAGCTT+AGG + chr3.1:46160294-46160313 None:intergenic 15.0%
!!! ATTTTTTTTTTCTTCTTGAT+AGG - chr3.1:46160151-46160170 MS.gene84539:intron 15.0%
!! ACTGCTTAAAAAAAAATCAA+AGG + chr3.1:46161134-46161153 None:intergenic 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG + chr3.1:46160623-46160642 None:intergenic 20.0%
!! CATCTAATTTAATGTTTAGA+TGG - chr3.1:46161306-46161325 MS.gene84539:intron 20.0%
!! TCTTGATTAATGGTAATATT+TGG - chr3.1:46160636-46160655 MS.gene84539:intron 20.0%
!!! ACCAAATACTATTGATTTAA+AGG - chr3.1:46160114-46160133 MS.gene84539:intron 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG - chr3.1:46160920-46160939 MS.gene84539:CDS 20.0%
!!! TCAAATCAGTAATTTTATTC+TGG - chr3.1:46160363-46160382 MS.gene84539:intron 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG - chr3.1:46160626-46160645 MS.gene84539:intron 20.0%
!!! TTACTACATAAACTTTTTGT+GGG - chr3.1:46161487-46161506 MS.gene84539:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG - chr3.1:46161486-46161505 MS.gene84539:intron 20.0%
! AAAAAAAATCAAAGGCTCTA+TGG + chr3.1:46161126-46161145 None:intergenic 25.0%
! AAAAAAGACAAATATCCCAA+AGG + chr3.1:46160917-46160936 None:intergenic 25.0%
! AAAAGAATTGGAAGAATACT+AGG + chr3.1:46160482-46160501 None:intergenic 25.0%
! ATTCGTGCATATAATTTCAA+TGG - chr3.1:46160403-46160422 MS.gene84539:intron 25.0%
! GCCTTTAAATCAATAGTATT+TGG + chr3.1:46160118-46160137 None:intergenic 25.0%
! TTCTTCTTGATAGGAAATTA+CGG - chr3.1:46160160-46160179 MS.gene84539:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG - chr3.1:46160899-46160918 MS.gene84539:intron 25.0%
!! TATGATATTTTCCTTTCCTT+TGG - chr3.1:46160898-46160917 MS.gene84539:intron 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG - chr3.1:46160927-46160946 MS.gene84539:CDS 25.0%
AGATTAATGTCACATACCAA+CGG + chr3.1:46160578-46160597 None:intergenic 30.0%
ATAACAAAAAGCTTAGGCAA+AGG + chr3.1:46160288-46160307 None:intergenic 30.0%
CCATTATTATGCTGTATTGA+CGG - chr3.1:46161168-46161187 MS.gene84539:intron 30.0%
CTTAACAACTTGAAAGCAAT+TGG + chr3.1:46160323-46160342 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG - chr3.1:46160525-46160544 MS.gene84539:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG - chr3.1:46160847-46160866 MS.gene84539:intron 30.0%
GTCGTATGAAATTGTGTAAA+AGG + chr3.1:46160963-46160982 None:intergenic 30.0%
TAGGGGAAAAATAAACAGAT+TGG - chr3.1:46160055-46160074 MS.gene84539:CDS 30.0%
TCCATATAAAGACTAAGCAA+CGG + chr3.1:46160985-46161004 None:intergenic 30.0%
TGCACAAATGTCAAGAAAAA+TGG - chr3.1:46161436-46161455 MS.gene84539:intron 30.0%
TTATCAGGATCCATATTATG+GGG - chr3.1:46160526-46160545 MS.gene84539:intron 30.0%
! TTAATCTGTTACTTGCTTCA+AGG - chr3.1:46160591-46160610 MS.gene84539:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG + chr3.1:46161286-46161305 None:intergenic 30.0%
AACAATACCAAGGAATTCTG+AGG - chr3.1:46160789-46160808 MS.gene84539:intron 35.0%
ACAATCAAGAGAGGATGAAT+TGG + chr3.1:46159880-46159899 None:intergenic 35.0%
ACAATGGTATGCAATCTTCA+AGG - chr3.1:46161922-46161941 MS.gene84539:CDS 35.0%
ACTACATACACTGGCAAAAT+TGG + chr3.1:46161520-46161539 None:intergenic 35.0%
AGACAAATATCCCAAAGGAA+AGG + chr3.1:46160912-46160931 None:intergenic 35.0%
ATGAATGTGACTACATACAC+TGG + chr3.1:46161529-46161548 None:intergenic 35.0%
ATGTGCTACAAATCCTTATC+AGG - chr3.1:46160511-46160530 MS.gene84539:intron 35.0%
ATTGGATTCTGAATCACCAT+TGG + chr3.1:46159904-46159923 None:intergenic 35.0%
CCATAATATGGATCCTGATA+AGG + chr3.1:46160527-46160546 None:intergenic 35.0%
CCGTCAATACAGCATAATAA+TGG + chr3.1:46161171-46161190 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG - chr3.1:46160524-46160543 MS.gene84539:intron 35.0%
CGATTTGCAAAGAAAACTGA+TGG - chr3.1:46161726-46161745 MS.gene84539:intron 35.0%
GGACTCATGCAAGTAAAAAA+TGG + chr3.1:46161594-46161613 None:intergenic 35.0%
GTCTCACTTGAAACATATTC+TGG + chr3.1:46161615-46161634 None:intergenic 35.0%
TATCAGGATCCATATTATGG+GGG - chr3.1:46160527-46160546 MS.gene84539:intron 35.0%
TATCCTTGTCTGCAAGAATT+AGG - chr3.1:46161365-46161384 MS.gene84539:intron 35.0%
TCCTACCATAACAACAACAA+TGG - chr3.1:46161906-46161925 MS.gene84539:CDS 35.0%
TCGCAATCAATTAGTTCATC+TGG - chr3.1:46161792-46161811 MS.gene84539:CDS 35.0%
TGTCTAGATTCATGAAGGTA+TGG + chr3.1:46161669-46161688 None:intergenic 35.0%
TGTTTAGCGTTCACATAAAC+AGG + chr3.1:46160773-46160792 None:intergenic 35.0%
TTCCTCATTCATCTCACTAT+TGG + chr3.1:46159946-46159965 None:intergenic 35.0%
TTGATAGGAAATTACGGACA+AGG - chr3.1:46160166-46160185 MS.gene84539:intron 35.0%
TTGGATTCTGAATCACCATT+GGG + chr3.1:46159903-46159922 None:intergenic 35.0%
! ACCATTGTTGTTGTTATGGT+AGG + chr3.1:46161910-46161929 None:intergenic 35.0%
! ACCGTTGCTTAGTCTTTATA+TGG - chr3.1:46160981-46161000 MS.gene84539:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG - chr3.1:46161930-46161949 MS.gene84539:CDS 35.0%
! GCATACCATTGTTGTTGTTA+TGG + chr3.1:46161914-46161933 None:intergenic 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG + chr3.1:46161287-46161306 None:intergenic 35.0%
! TAGGGATATCCTCCTTTTAT+AGG - chr3.1:46160701-46160720 MS.gene84539:intron 35.0%
! TATGCAATCTTCAAGGTATC+AGG - chr3.1:46161929-46161948 MS.gene84539:CDS 35.0%
! TCTAAAGCACCTGATTGATT+GGG + chr3.1:46160005-46160024 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG - chr3.1:46160487-46160506 MS.gene84539:intron 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG + chr3.1:46160006-46160025 None:intergenic 35.0%
AGAGGATCAAACGAAAATGG+CGG - chr3.1:46161879-46161898 MS.gene84539:CDS 40.0%
AGCTTGTAGTTGCATGCATT+TGG - chr3.1:46160443-46160462 MS.gene84539:intron 40.0%
AGGTTCAGAATAAACACCAC+CGG + chr3.1:46159808-46159827 None:intergenic 40.0%
ATACACTGGCAAAATTGGAG+TGG + chr3.1:46161515-46161534 None:intergenic 40.0%
CATGCCTGCATCAAAAGAAT+TGG + chr3.1:46160494-46160513 None:intergenic 40.0%
GATTCAGAATCCAATGAGGA+AGG - chr3.1:46159909-46159928 MS.gene84539:CDS 40.0%
GCAAGAGGATCAAACGAAAA+TGG - chr3.1:46161876-46161895 MS.gene84539:CDS 40.0%
GCTGATGTCTAGATTCATGA+AGG + chr3.1:46161674-46161693 None:intergenic 40.0%
GTCCAATAGTGAGATGAATG+AGG - chr3.1:46159941-46159960 MS.gene84539:CDS 40.0%
GTGAACGCTAAACAATACCA+AGG - chr3.1:46160779-46160798 MS.gene84539:intron 40.0%
GTGGTGTTTATTCTGAACCT+TGG - chr3.1:46159808-46159827 MS.gene84539:CDS 40.0%
GTGTTTATTCTGAACCTTGG+TGG - chr3.1:46159811-46159830 MS.gene84539:CDS 40.0%
TATATGCGCTGTTGTCTGTA+AGG - chr3.1:46161058-46161077 MS.gene84539:intron 40.0%
TCTCACTATTGGACAAAGAC+TGG + chr3.1:46159935-46159954 None:intergenic 40.0%
TGGTGATTCAGAATCCAATG+AGG - chr3.1:46159905-46159924 MS.gene84539:CDS 40.0%
TGTTTAGATGGATCTGCTGT+TGG - chr3.1:46161318-46161337 MS.gene84539:intron 40.0%
TTTCTTTGCAAATCGTCCTC+CGG + chr3.1:46161721-46161740 None:intergenic 40.0%
! TGATTTGCAGTTTCGGACTT+GGG + chr3.1:46159756-46159775 None:intergenic 40.0%
! TGCAAAGAAAACTGATGGTG+AGG - chr3.1:46161731-46161750 MS.gene84539:intron 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG - chr3.1:46161686-46161705 MS.gene84539:intron 40.0%
!! TTGATTTGCAGTTTCGGACT+TGG + chr3.1:46159757-46159776 None:intergenic 40.0%
AACATGCGACAAGATGCAAG+AGG - chr3.1:46161861-46161880 MS.gene84539:CDS 45.0%
AAGCTCTCAGATGCAGATAG+TGG - chr3.1:46161399-46161418 MS.gene84539:intron 45.0%
AAGGAATGAGGATCTGACCT+CGG + chr3.1:46159780-46159799 None:intergenic 45.0%
ACCATTGGGACAATCAAGAG+AGG + chr3.1:46159889-46159908 None:intergenic 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG - chr3.1:46161949-46161968 MS.gene84539:CDS 45.0%
AGGTTCTTGAGCCATCTCAA+GGG + chr3.1:46160753-46160772 None:intergenic 45.0%
ATTGATTGCGACGACAAGAC+TGG + chr3.1:46161783-46161802 None:intergenic 45.0%
CAGCCTAATTCTTGCAGACA+AGG + chr3.1:46161371-46161390 None:intergenic 45.0%
CTTGCATCTTGTCGCATGTT+GGG + chr3.1:46161861-46161880 None:intergenic 45.0%
GGAAATTACGGACAAGGACA+AGG - chr3.1:46160172-46160191 MS.gene84539:intron 45.0%
GGTTCAGAATAAACACCACC+GGG + chr3.1:46159807-46159826 None:intergenic 45.0%
GTAGTTGCATGCATTTGGAC+TGG - chr3.1:46160448-46160467 MS.gene84539:intron 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG - chr3.1:46160825-46160844 MS.gene84539:intron 45.0%
TAATGTCACATACCAACGGC+TGG + chr3.1:46160574-46160593 None:intergenic 45.0%
TCCTCTCTTGATTGTCCCAA+TGG - chr3.1:46159885-46159904 MS.gene84539:CDS 45.0%
TCTTGCATCTTGTCGCATGT+TGG + chr3.1:46161862-46161881 None:intergenic 45.0%
TTAGATGGATCTGCTGTTGG+AGG - chr3.1:46161321-46161340 MS.gene84539:intron 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG - chr3.1:46161941-46161960 MS.gene84539:CDS 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG - chr3.1:46161821-46161840 MS.gene84539:CDS 45.0%
! GCATGAGGCACTCCTATAAA+AGG + chr3.1:46160716-46160735 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG - chr3.1:46159962-46159981 MS.gene84539:CDS 45.0%
! TCCATATTATGGGGGCATGA+TGG - chr3.1:46160535-46160554 MS.gene84539:intron 45.0%
! TGAGGCACTCCTATAAAAGG+AGG + chr3.1:46160713-46160732 None:intergenic 45.0%
! TGCATGCATTTGGACTGGAT+GGG - chr3.1:46160453-46160472 MS.gene84539:intron 45.0%
! TTGCATGCATTTGGACTGGA+TGG - chr3.1:46160452-46160471 MS.gene84539:intron 45.0%
!! AGGCGTCTTGCTATTCAGTA+GGG - chr3.1:46162023-46162042 MS.gene84539:CDS 45.0%
!! CCTCGGTTGATTTGCAGTTT+CGG + chr3.1:46159763-46159782 None:intergenic 45.0%
!! GACATCAGCATGCTTTGAGA+AGG - chr3.1:46161685-46161704 MS.gene84539:intron 45.0%
!! ATAGTAAAAAAAAAAAAATA+TGG + chr3.1:46160681-46160700 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTACTATT+AGG - chr3.1:46160682-46160701 MS.gene84539:intron 5.0%
!!! TTTTTTTTTTTTTACTATTA+GGG - chr3.1:46160683-46160702 MS.gene84539:intron 5.0%
AATGCCTTTGCCCCTTGAGA+TGG - chr3.1:46160739-46160758 MS.gene84539:intron 50.0%
ACTCCTCAGCTGGAACTTGT+TGG - chr3.1:46160247-46160266 MS.gene84539:intron 50.0%
AGAGCCATTATCCTTTCCCG+AGG + chr3.1:46161757-46161776 None:intergenic 50.0%
ATAAACACCACCGGGCTGAA+AGG + chr3.1:46159799-46159818 None:intergenic 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG - chr3.1:46161948-46161967 MS.gene84539:CDS 50.0%
CAGGTTCTTGAGCCATCTCA+AGG + chr3.1:46160754-46160773 None:intergenic 50.0%
CCGAAACTGCAAATCAACCG+AGG - chr3.1:46159760-46159779 MS.gene84539:CDS 50.0%
GATCCTCATTCCTTTCAGCC+CGG - chr3.1:46159786-46159805 MS.gene84539:CDS 50.0%
GCCATCATGCCCCCATAATA+TGG + chr3.1:46160539-46160558 None:intergenic 50.0%
GGATCAAACGAAAATGGCGG+TGG - chr3.1:46161882-46161901 MS.gene84539:CDS 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG - chr3.1:46161950-46161969 MS.gene84539:CDS 50.0%
GGTTCTTGAGCCATCTCAAG+GGG + chr3.1:46160752-46160771 None:intergenic 50.0%
GTCTTCGCCTCAGAATTCCT+TGG + chr3.1:46160799-46160818 None:intergenic 50.0%
TCGCATGTTGGGAGAATTCC+AGG + chr3.1:46161850-46161869 None:intergenic 50.0%
TGACCAACAAGTTCCAGCTG+AGG + chr3.1:46160253-46160272 None:intergenic 50.0%
TGGAAGAAGGGGACTGTTCA+GGG - chr3.1:46161961-46161980 MS.gene84539:CDS 50.0%
TGGAGGCTCATGGAAGTTAG+AGG - chr3.1:46161338-46161357 MS.gene84539:intron 50.0%
! AAAACTGATGGTGAGGCCTC+GGG - chr3.1:46161738-46161757 MS.gene84539:intron 50.0%
! GAAAACTGATGGTGAGGCCT+CGG - chr3.1:46161737-46161756 MS.gene84539:intron 50.0%
! TCGGGAAAGGATAATGGCTC+TGG - chr3.1:46161756-46161775 MS.gene84539:intron 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG + chr3.1:46159922-46159941 None:intergenic 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG - chr3.1:46161693-46161712 MS.gene84539:intron 50.0%
!! GAGGCGTCTTGCTATTCAGT+AGG - chr3.1:46162022-46162041 MS.gene84539:CDS 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG - chr3.1:46159816-46159835 MS.gene84539:CDS 50.0%
AGCTTATCCTCACCAGCCGT+TGG - chr3.1:46160559-46160578 MS.gene84539:intron 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG + chr3.1:46161831-46161850 None:intergenic 55.0%
CCAGACATTGCTTGCGCTAC+AGG + chr3.1:46159855-46159874 None:intergenic 55.0%
CCTGATTGATTGGGAGCAGC+AGG + chr3.1:46159996-46160015 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG - chr3.1:46159993-46160012 MS.gene84539:CDS 55.0%
CCTGTAGCGCAAGCAATGTC+TGG - chr3.1:46159852-46159871 MS.gene84539:CDS 55.0%
CTTCAGACTCTGCGGAAACC+TGG - chr3.1:46161829-46161848 MS.gene84539:CDS 55.0%
GAGGCCTCGGGAAAGGATAA+TGG - chr3.1:46161750-46161769 MS.gene84539:intron 55.0%
GATCTGCTGTTGGAGGCTCA+TGG - chr3.1:46161328-46161347 MS.gene84539:intron 55.0%
GTGGAAGAAGGGGACTGTTC+AGG - chr3.1:46161960-46161979 MS.gene84539:CDS 55.0%
TATCCAACACCACGCCACCA+AGG + chr3.1:46159828-46159847 None:intergenic 55.0%
TCACATACCAACGGCTGGTG+AGG + chr3.1:46160569-46160588 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG + chr3.1:46160746-46160765 None:intergenic 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG - chr3.1:46161699-46161718 MS.gene84539:intron 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG + chr3.1:46160738-46160757 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG + chr3.1:46160731-46160750 None:intergenic 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG - chr3.1:46161992-46162011 MS.gene84539:CDS 55.0%
CCACCGGGCTGAAAGGAATG+AGG + chr3.1:46159792-46159811 None:intergenic 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG + chr3.1:46160240-46160259 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG - chr3.1:46160237-46160256 MS.gene84539:intron 60.0%
CCTCATTCCTTTCAGCCCGG+TGG - chr3.1:46159789-46159808 MS.gene84539:CDS 60.0%
GACTGTTCAGGGCAGCTACG+TGG - chr3.1:46161972-46161991 MS.gene84539:CDS 60.0%
! TGATGGTGAGGCCTCGGGAA+AGG - chr3.1:46161743-46161762 MS.gene84539:intron 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG - chr3.1:46159822-46159841 MS.gene84539:CDS 60.0%
CCTCTGCGATGCCTCGTTCG+AGG + chr3.1:46162006-46162025 None:intergenic 65.0%
!! AGAAGGGCAAGAGGCACCGG+AGG - chr3.1:46161702-46161721 MS.gene84539:intron 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG - chr3.1:46162003-46162022 MS.gene84539:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 46159735 46162043 46159735 ID=MS.gene84539
chr3.1 mRNA 46159735 46162043 46159735 ID=MS.gene84539.t1;Parent=MS.gene84539
chr3.1 exon 46161764 46162043 46161764 ID=MS.gene84539.t1.exon1;Parent=MS.gene84539.t1
chr3.1 CDS 46161764 46162043 46161764 ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1
chr3.1 exon 46161499 46161605 46161499 ID=MS.gene84539.t1.exon2;Parent=MS.gene84539.t1
chr3.1 CDS 46161499 46161605 46161499 ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1
chr3.1 exon 46161198 46161269 46161198 ID=MS.gene84539.t1.exon3;Parent=MS.gene84539.t1
chr3.1 CDS 46161198 46161269 46161198 ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1
chr3.1 exon 46160910 46161074 46160910 ID=MS.gene84539.t1.exon4;Parent=MS.gene84539.t1
chr3.1 CDS 46160910 46161074 46160910 ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1
chr3.1 exon 46159735 46160112 46159735 ID=MS.gene84539.t1.exon5;Parent=MS.gene84539.t1
chr3.1 CDS 46159735 46160112 46159735 ID=cds.MS.gene84539.t1;Parent=MS.gene84539.t1
Gene Sequence

>MS.gene84539

GGATCTGAGGATATGCAACCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAGCAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGTGCTTTAGAATATCGTGTAATTATTTACTAACAATTAAATAGGGGAAAAATAAACAGATTGGCACTTTAAACTACATTTGATGAAATTTTTTCATTCGACCAAATACTATTGATTTAAAGGCACTAAAATACAGTATTTTTTTTTTCTTCTTGATAGGAAATTACGGACAAGGACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGTAAGCCTTTGCCTAAGCTTTTTGTTATTTTTTATTTTTACCAATTGCTTTCAAGTTGTTAAGATAAACATTTTTTGCAAACATCAAATCAGTAATTTTATTCTGGAACACAAATCTTTGCTGATTCGTGCATATAATTTCAATGGAAAATATGTTATTATAGAGCTTGTAGTTGCATGCATTTGGACTGGATGGGACTCCTAGTATTCTTCCAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGTATGTGACATTAATCTGTTACTTGCTTCAAGGTTATTGCCATTTTGTTCTATTTTCTTGATTAATGGTAATATTTGGATAACATTGTGATATTTAACCATATTTTTTTTTTTTTACTATTAGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGGTACGAATTCGTAAAAGCTAATGCTTCTTTATGATATTTTCCTTTCCTTTGGGATATTTGTCTTTTTTATATGGAGAAAGGCTTCTGTCTACCTTTTACACAATTTCATACGACCGTTGCTTAGTCTTTATATGGAATATTTTAAAAATATATATCAGCGTGCATGTAGTAGCAAGTCTTTGTGTATGTTATATGCGCTGTTGTCTGTAAGGAGAAACTATAAATGTTTCTAAATTCTAATATATAGGACTCAACCATAGAGCCTTTGATTTTTTTTTAAGCAGTAATGTTTGTTGTATCCATTATTATGCTGTATTGACGGCGACAAAAGTCAGTTCTTGTTTACTTAATTAGAATTATGTAAAAACATTCCTTCAAAAAAAAAAATGTAAAAACATTTGTGAACAACAATCACCCACTTTTGAAACAAGCAACAACATCTAATTTAATGTTTAGATGGATCTGCTGTTGGAGGCTCATGGAAGTTAGAGGATTGTATCCTTGTCTGCAAGAATTAGGCTGTAAAATATAAGCTCTCAGATGCAGATAGTGGTAATTATATATTATTGCACAAATGTCAAGAAAAATGGTATTTGAAATTAGATTTCTAAAATGATTTTACTACATAAACTTTTTGTGGGTTCCACTCCAATTTTGCCAGTGTATGTAGTCACATTCATGTAAAATGAGAAAAGCAAATAGAGCTAAGTTGCTGATTTTCACCATTTTTTACTTGCATGAGTCCAGAATATGTTTCAAGTGAGACAGAACTTGATGCTAACATCTATTATTTTCAGCCATACCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGCGGTGGCTCCTACCATAACAACAACAATGGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG

Protein sequence

>MS.gene84539.t1

GSEDMQPKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQAMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQGQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNGMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ