AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84717

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84717.t1 MTR_8g024770 92.457 464 25 1 1 464 1 454 0.0 839
MS.gene84717.t1 MTR_8g024790 82.057 457 67 8 13 464 16 462 0.0 744
MS.gene84717.t1 MTR_5g030430 51.485 202 89 4 270 464 474 673 1.43e-53 191
MS.gene84717.t1 MTR_5g030430 33.514 185 90 3 22 177 44 224 3.14e-29 121
MS.gene84717.t1 MTR_8g067280 48.187 193 92 3 271 456 444 635 2.45e-49 179
MS.gene84717.t1 MTR_8g067280 33.005 203 102 7 22 195 53 250 3.96e-26 112
MS.gene84717.t1 MTR_7g096350 27.966 472 238 12 22 436 49 475 4.65e-38 145
MS.gene84717.t1 MTR_5g030420 34.857 175 81 4 22 167 27 197 8.96e-30 116
MS.gene84717.t1 MTR_5g030420 34.857 175 81 4 22 167 27 197 1.06e-29 117
MS.gene84717.t1 MTR_8g027495 38.596 171 91 5 287 456 456 613 1.29e-24 107
MS.gene84717.t1 MTR_7g117670 35.465 172 95 3 287 456 400 557 3.27e-22 100
MS.gene84717.t1 MTR_3g104100 32.927 164 102 3 277 433 183 345 1.33e-17 84.7
MS.gene84717.t1 MTR_1g072320 31.429 210 116 6 253 445 431 629 2.97e-17 85.1
MS.gene84717.t1 MTR_4g009110 25.989 177 120 3 275 448 164 332 7.49e-16 79.0
MS.gene84717.t1 MTR_2g081040 33.548 155 95 3 286 433 174 327 8.21e-16 79.0
MS.gene84717.t1 MTR_4g009540 27.624 181 109 5 275 445 142 310 3.77e-15 76.6
MS.gene84717.t1 MTR_3g030700 35.795 176 98 5 266 433 173 341 6.80e-15 76.6
MS.gene84717.t1 MTR_0250s0040 29.730 148 80 4 260 402 69 197 7.06e-15 75.1
MS.gene84717.t1 MTR_4g097940 29.193 161 99 4 275 429 138 289 8.10e-15 75.9
MS.gene84717.t1 MTR_4g009540 29.091 165 95 5 275 429 142 294 1.13e-14 75.5
MS.gene84717.t1 MTR_7g083900 60.000 55 22 0 287 341 284 338 1.89e-13 72.8
MS.gene84717.t1 MTR_7g083900 60.000 55 22 0 287 341 284 338 2.01e-13 72.4
MS.gene84717.t1 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.23e-13 72.4
MS.gene84717.t1 MTR_3g498695 58.182 55 23 0 287 341 296 350 2.27e-13 72.4
MS.gene84717.t1 MTR_5g014640 31.944 144 83 3 290 429 155 287 3.64e-13 70.9
MS.gene84717.t1 MTR_4g067010 28.788 132 74 4 276 402 137 253 1.70e-12 68.9
MS.gene84717.t1 MTR_4g066460 30.263 152 72 5 256 402 139 261 1.76e-12 68.6
MS.gene84717.t1 MTR_6g047570 29.323 133 80 3 275 402 145 268 2.29e-12 68.6
MS.gene84717.t1 MTR_2g022280 27.381 168 105 5 288 442 1 164 2.73e-12 65.9
MS.gene84717.t1 MTR_4g097950 33.835 133 82 4 274 401 54 185 3.54e-12 66.6
MS.gene84717.t1 MTR_4g092700 26.601 203 123 6 272 460 143 333 6.32e-12 67.0
MS.gene84717.t1 MTR_4g097920 29.167 168 98 7 268 431 121 271 8.11e-12 66.6
MS.gene84717.t1 MTR_0246s0020 28.814 118 75 2 289 401 198 311 8.12e-12 67.0
MS.gene84717.t1 MTR_4g097920 29.655 145 87 5 289 431 155 286 8.38e-12 66.6
MS.gene84717.t1 MTR_0246s0020 28.814 118 75 2 289 401 198 311 8.49e-12 67.0
MS.gene84717.t1 MTR_8g098275 56.364 55 24 0 288 342 243 297 1.02e-11 67.0
MS.gene84717.t1 MTR_7g110810 31.667 120 71 2 236 345 150 268 1.09e-11 66.6
MS.gene84717.t1 MTR_8g098275 56.364 55 24 0 288 342 307 361 1.14e-11 67.0
MS.gene84717.t1 MTR_8g098275 56.364 55 24 0 288 342 400 454 1.25e-11 67.4
MS.gene84717.t1 MTR_2g010450 25.904 166 102 3 289 445 177 330 1.40e-11 66.2
MS.gene84717.t1 MTR_2g084280 28.667 150 93 4 293 438 137 276 1.44e-11 65.9
MS.gene84717.t1 MTR_0011s0260 27.778 144 94 3 289 429 183 319 1.46e-11 66.2
MS.gene84717.t1 MTR_2g104490 26.630 184 114 8 272 443 116 290 1.83e-11 65.1
MS.gene84717.t1 MTR_0011s0210 27.083 144 95 3 289 429 183 319 2.20e-11 65.5
MS.gene84717.t1 MTR_4g094762 30.968 155 93 6 290 434 293 443 2.22e-11 66.2
MS.gene84717.t1 MTR_2g038040 50.000 62 24 1 290 344 53 114 2.33e-11 64.3
MS.gene84717.t1 MTR_2g104490 26.667 180 111 8 272 439 116 286 2.68e-11 65.1
MS.gene84717.t1 MTR_2g104550 23.267 202 135 7 249 439 98 290 3.45e-11 64.7
MS.gene84717.t1 MTR_1g112680 31.092 119 57 2 224 342 277 370 6.72e-11 64.7
MS.gene84717.t1 MTR_5g014600 35.366 82 50 1 269 347 126 207 7.56e-11 63.9
MS.gene84717.t1 MTR_4g057270 52.000 50 24 0 293 342 153 202 9.12e-11 63.5
MS.gene84717.t1 MTR_8g009020 23.980 196 141 3 252 439 106 301 9.71e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84717.t1 AT4G00870 34.967 449 218 11 17 455 29 413 2.53e-68 224
MS.gene84717.t1 AT5G46830 32.475 505 252 15 22 464 33 510 3.06e-61 208
MS.gene84717.t1 AT1G32640 49.528 212 89 6 259 464 423 622 7.10e-53 188
MS.gene84717.t1 AT1G32640 31.579 190 93 3 22 178 67 252 8.87e-31 125
MS.gene84717.t1 AT4G17880 48.691 191 83 5 270 455 397 577 6.64e-50 179
MS.gene84717.t1 AT4G17880 30.208 192 94 3 23 178 63 250 1.35e-28 119
MS.gene84717.t1 AT5G46760 47.980 198 95 5 270 464 396 588 2.78e-49 177
MS.gene84717.t1 AT5G46760 32.609 184 88 4 22 173 51 230 1.15e-26 113
MS.gene84717.t1 AT2G46510 27.701 509 251 15 22 442 47 526 1.59e-43 161
MS.gene84717.t1 AT4G16430 26.068 468 262 13 3 437 25 441 4.22e-36 139
MS.gene84717.t1 AT1G01260 38.182 165 76 3 273 437 417 555 7.99e-27 114
MS.gene84717.t1 AT1G01260 38.182 165 76 3 273 437 417 555 7.99e-27 114
MS.gene84717.t1 AT1G01260 38.182 165 76 3 273 437 417 555 7.99e-27 114
MS.gene84717.t1 AT4G00480 21.414 495 278 16 28 436 26 495 2.42e-18 88.2
MS.gene84717.t1 AT4G00480 21.414 495 278 16 28 436 26 495 3.74e-18 87.4
MS.gene84717.t1 AT4G00480 21.328 497 280 16 28 438 26 497 3.76e-18 87.4
MS.gene84717.t1 AT4G37850 29.954 217 120 7 235 429 84 290 3.21e-16 80.1
MS.gene84717.t1 AT4G37850 29.954 217 120 7 235 429 84 290 3.21e-16 80.1
MS.gene84717.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.49e-14 75.1
MS.gene84717.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.51e-14 75.1
MS.gene84717.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.51e-14 75.1
MS.gene84717.t1 AT3G26744 60.000 55 22 0 287 341 305 359 3.51e-14 75.1
MS.gene84717.t1 AT1G12860 60.000 55 22 0 287 341 265 319 5.00e-14 74.3
MS.gene84717.t1 AT1G12860 60.000 55 22 0 287 341 265 319 5.60e-14 74.3
MS.gene84717.t1 AT1G63650 26.061 165 106 4 289 438 405 568 7.32e-13 71.2
MS.gene84717.t1 AT1G63650 26.061 165 106 4 289 438 405 568 7.32e-13 71.2
MS.gene84717.t1 AT1G63650 26.061 165 106 4 289 438 405 568 7.32e-13 71.2
MS.gene84717.t1 AT5G57150 27.368 190 99 6 267 437 38 207 1.27e-12 67.8
MS.gene84717.t1 AT5G57150 27.368 190 99 6 267 437 39 208 1.99e-12 67.0
MS.gene84717.t1 AT5G57150 27.368 190 99 6 267 437 39 208 2.09e-12 67.0
MS.gene84717.t1 AT5G57150 27.368 190 99 6 267 437 38 207 2.11e-12 67.4
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.51e-12 67.0
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.60e-12 66.6
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 2.65e-12 66.6
MS.gene84717.t1 AT5G57150 31.288 163 107 4 290 447 56 218 3.28e-12 67.0
MS.gene84717.t1 AT4G09820 50.909 55 27 0 288 342 362 416 4.32e-12 68.6
MS.gene84717.t1 AT4G29930 63.636 44 16 0 291 334 56 99 4.96e-12 65.1
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.36e-12 66.6
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.36e-12 66.6
MS.gene84717.t1 AT4G29930 62.222 45 17 0 290 334 55 99 5.37e-12 66.2
MS.gene84717.t1 AT2G16910 29.843 191 107 7 293 461 318 503 7.05e-12 68.2
MS.gene84717.t1 AT2G22750 36.842 133 75 4 276 401 137 267 2.36e-11 65.5
MS.gene84717.t1 AT3G24140 24.537 216 138 5 269 460 175 389 2.62e-11 65.9
MS.gene84717.t1 AT2G22750 36.842 133 75 4 276 401 137 267 2.75e-11 65.1
MS.gene84717.t1 AT2G22750 36.842 133 75 4 276 401 133 263 2.75e-11 65.1
MS.gene84717.t1 AT2G22750 36.842 133 75 4 276 401 109 239 3.05e-11 64.7
MS.gene84717.t1 AT3G24140 24.537 216 138 5 269 460 175 389 3.14e-11 65.5
MS.gene84717.t1 AT2G22750 36.842 133 75 4 276 401 109 239 3.14e-11 64.7
MS.gene84717.t1 AT5G41315 25.140 179 112 6 280 438 441 617 5.87e-11 65.1
MS.gene84717.t1 AT5G41315 25.140 179 112 6 280 438 438 614 6.23e-11 65.1
MS.gene84717.t1 AT5G41315 25.140 179 112 6 280 438 433 609 6.25e-11 65.1

Find 68 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTGAAGATTTAAAATT+AGG 0.097958 8.3:-67709778 MS.gene84717:CDS
CTTGAAAGATTTGGAGTTTC+AGG 0.118528 8.3:-67709539 MS.gene84717:CDS
CTTCTCATGGGTGGCTTCTT+TGG 0.173047 8.3:+67710128 None:intergenic
GAGATTGATGTGAAGATTAT+AGG 0.182361 8.3:-67709628 MS.gene84717:CDS
TCCAAACCCAATCCGAAAAT+TGG 0.228757 8.3:-67710695 MS.gene84717:CDS
TGAGAATTGCAGACCTAATT+AGG 0.229660 8.3:+67709425 None:intergenic
TTGCTTTAGATTCTGTTCTT+TGG 0.229970 8.3:-67710449 MS.gene84717:CDS
AAGGTAAACCTTTCTTATCT+TGG 0.238310 8.3:-67710635 MS.gene84717:CDS
GTTTGAAGTTGTTGTTTCTT+TGG 0.252021 8.3:+67710590 None:intergenic
ATGACAATATACAACAAAAT+TGG 0.257338 8.3:-67710305 MS.gene84717:CDS
TACTACAACTAGGTTTGTTT+TGG 0.270219 8.3:+67709668 None:intergenic
TCTTCATTTCTCATCTCATT+AGG 0.290165 8.3:+67709451 None:intergenic
GACCGTTAATAAAGTTATAA+TGG 0.291909 8.3:-67709497 MS.gene84717:CDS
AGGTAAACCTTTCTTATCTT+GGG 0.292720 8.3:-67710634 MS.gene84717:CDS
ATCTTAAAGCATAGAATCTA+TGG 0.304209 8.3:+67709881 None:intergenic
AGATTGAAGATTTAAAATTA+GGG 0.310294 8.3:-67709777 MS.gene84717:CDS
AACCATTATAACTTTATTAA+CGG 0.312837 8.3:+67709495 None:intergenic
ATCTAAAGCAAAAGCTTTAC+CGG 0.323817 8.3:+67710461 None:intergenic
TTATCCATCTTTGAAACGTT+TGG 0.324231 8.3:+67709850 None:intergenic
AACTAACGGTGTAATCGAAA+TGG 0.327388 8.3:-67710334 MS.gene84717:CDS
GCCAACATGGGTGTCGTCTC+TGG 0.337682 8.3:-67710159 MS.gene84717:CDS
TTGATTCTGAGGAGGATGTT+TGG 0.339396 8.3:+67710253 None:intergenic
AATGAGTGTCTTGAAAGATT+TGG 0.347886 8.3:-67709548 MS.gene84717:CDS
GGATGTTTGGAACATAGATT+TGG 0.360854 8.3:+67710266 None:intergenic
TCCATGCATGTGTGCTTCAT+TGG 0.364769 8.3:+67710383 None:intergenic
TGTTGAAGGGTTGGTGTTTG+TGG 0.365685 8.3:+67710735 None:intergenic
TGTTGGCAAAAGATGTGTTT+TGG 0.367022 8.3:+67710175 None:intergenic
AGGGTTGGTGTTTGTGGTGA+AGG 0.385693 8.3:+67710741 None:intergenic
TTTATCTCTCCTTTGTCTCT+CGG 0.386285 8.3:+67709909 None:intergenic
TCGATTACACCGTTAGTTGT+AGG 0.388592 8.3:+67710339 None:intergenic
ATGGGTGGCTTCTTTGGCGC+TGG 0.396457 8.3:+67710134 None:intergenic
CAAACAACAAAAGATGAAAA+AGG 0.404302 8.3:-67710654 MS.gene84717:CDS
GGTTCCAAACGTTTCAAAGA+TGG 0.424360 8.3:-67709854 MS.gene84717:CDS
GGGTTGGTGTTTGTGGTGAA+GGG 0.433509 8.3:+67710742 None:intergenic
GACAGTAACACGTGTACAAA+CGG 0.437917 8.3:-67710558 MS.gene84717:CDS
GAAATGAAGAGAGCCTAATT+AGG 0.443372 8.3:-67709438 MS.gene84717:CDS
CCTTTCTTATCTTGGGGTGA+AGG 0.446476 8.3:-67710627 MS.gene84717:CDS
GAGATAATGAAATCTTTCAT+AGG 0.448427 8.3:+67710789 None:intergenic
ACATTTGTCAAGTGGGGTGG+TGG 0.451062 8.3:+67710209 None:intergenic
TTTAAAATTAGGGCAACAAA+AGG 0.456499 8.3:-67709767 MS.gene84717:CDS
AAAAGAGAACCGAAGAAAAG+AGG 0.478932 8.3:-67709979 MS.gene84717:CDS
GTACAAACGGCGATGCTGAA+TGG 0.480446 8.3:-67710545 MS.gene84717:CDS
ACTAACGGTGTAATCGAAAT+GGG 0.485666 8.3:-67710333 MS.gene84717:CDS
TCGGCTTCCACATGGTTCAT+CGG 0.486588 8.3:+67709928 None:intergenic
TTTGGAACATAGATTTGGCT+TGG 0.488416 8.3:+67710271 None:intergenic
CCTTCACCCCAAGATAAGAA+AGG 0.497048 8.3:+67710627 None:intergenic
GGTGTTTGAGTTCGTGTCAA+CGG 0.501817 8.3:+67709949 None:intergenic
TAAATTTGAGTTTGATTCTG+AGG 0.509911 8.3:+67710242 None:intergenic
ATTCTATGCTTTAAGATCTG+TGG 0.527981 8.3:-67709875 MS.gene84717:CDS
ACACTCATTAATCGTGCACT+AGG 0.531276 8.3:+67709562 None:intergenic
AATTGAAGAAGCATTACCTA+TGG 0.532558 8.3:+67710491 None:intergenic
GGTAAACCTTTCTTATCTTG+GGG 0.537701 8.3:-67710633 MS.gene84717:CDS
TTCTTTGTTATCAGATGCAG+TGG 0.539939 8.3:-67709824 MS.gene84717:CDS
TTTGTCTCTCGGCTTCCACA+TGG 0.548386 8.3:+67709920 None:intergenic
TCCAATGAAGCACACATGCA+TGG 0.551566 8.3:-67710384 MS.gene84717:CDS
GCTTCTTCAATTTCATTACC+CGG 0.556623 8.3:-67710480 MS.gene84717:CDS
ATGTGGAAGCCGAGAGACAA+AGG 0.579932 8.3:-67709918 MS.gene84717:CDS
ATTTGAGTTTGATTCTGAGG+AGG 0.594452 8.3:+67710245 None:intergenic
ATTTGTATACCTACAACTAA+CGG 0.599891 8.3:-67710348 MS.gene84717:CDS
ATAAGATTCTTACTACAACT+AGG 0.600771 8.3:+67709658 None:intergenic
TTTACATTTGTCAAGTGGGG+TGG 0.601476 8.3:+67710206 None:intergenic
GCCAGAGACGACACCCATGT+TGG 0.603838 8.3:+67710158 None:intergenic
GATTATAGGACATGATGCTA+TGG 0.615350 8.3:-67709614 MS.gene84717:CDS
CACTCATTAATCGTGCACTA+GGG 0.626623 8.3:+67709563 None:intergenic
TAGATTTGGCTTGGTATACG+AGG 0.640872 8.3:+67710280 None:intergenic
TCTAAAGCAAAAGCTTTACC+GGG 0.640910 8.3:+67710462 None:intergenic
TGCAACGACAACTTCAATCG+TGG 0.678130 8.3:-67709695 MS.gene84717:CDS
TCAAACACCGATGAACCATG+TGG 0.723026 8.3:-67709935 MS.gene84717:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACCATTATAACTTTATTAA+CGG + chr8.3:67710708-67710727 None:intergenic 15.0%
!!! AAGATTGAAGATTTAAAATT+AGG - chr8.3:67710422-67710441 MS.gene84717:CDS 15.0%
!!! AGATTGAAGATTTAAAATTA+GGG - chr8.3:67710423-67710442 MS.gene84717:CDS 15.0%
!! ATGACAATATACAACAAAAT+TGG - chr8.3:67709895-67709914 MS.gene84717:CDS 20.0%
! ATAAGATTCTTACTACAACT+AGG + chr8.3:67710545-67710564 None:intergenic 25.0%
! ATCTTAAAGCATAGAATCTA+TGG + chr8.3:67710322-67710341 None:intergenic 25.0%
! ATTTGTATACCTACAACTAA+CGG - chr8.3:67709852-67709871 MS.gene84717:CDS 25.0%
! CAAACAACAAAAGATGAAAA+AGG - chr8.3:67709546-67709565 MS.gene84717:CDS 25.0%
! GACCGTTAATAAAGTTATAA+TGG - chr8.3:67710703-67710722 MS.gene84717:CDS 25.0%
!! AATGTTTTACATTTGTCAAG+TGG + chr8.3:67710002-67710021 None:intergenic 25.0%
!! ATGTTTTACATTTGTCAAGT+GGG + chr8.3:67710001-67710020 None:intergenic 25.0%
!! TAAATTTGAGTTTGATTCTG+AGG + chr8.3:67709961-67709980 None:intergenic 25.0%
!! TTTAAAATTAGGGCAACAAA+AGG - chr8.3:67710433-67710452 MS.gene84717:CDS 25.0%
!!! AAATTTGAAGCTTTTGTTGA+AGG + chr8.3:67709482-67709501 None:intergenic 25.0%
!!! AATTTGAAGCTTTTGTTGAA+GGG + chr8.3:67709481-67709500 None:intergenic 25.0%
!!! CAATTTTTTTTGCTTCTCAT+GGG + chr8.3:67710087-67710106 None:intergenic 25.0%
AAGGTAAACCTTTCTTATCT+TGG - chr8.3:67709565-67709584 MS.gene84717:CDS 30.0%
AATGAGTGTCTTGAAAGATT+TGG - chr8.3:67710652-67710671 MS.gene84717:CDS 30.0%
AGGTAAACCTTTCTTATCTT+GGG - chr8.3:67709566-67709585 MS.gene84717:CDS 30.0%
GAGATTGATGTGAAGATTAT+AGG - chr8.3:67710572-67710591 MS.gene84717:CDS 30.0%
TCTTCATTTCTCATCTCATT+AGG + chr8.3:67710752-67710771 None:intergenic 30.0%
! AATGGCATAGATCCAATTTT+CGG + chr8.3:67709520-67709539 None:intergenic 30.0%
! ATAGATCCAATTTTCGGATT+GGG + chr8.3:67709514-67709533 None:intergenic 30.0%
! ATCTAAAGCAAAAGCTTTAC+CGG + chr8.3:67709742-67709761 None:intergenic 30.0%
! ATGACTCGAAATTTTTCCAT+AGG - chr8.3:67709693-67709712 MS.gene84717:CDS 30.0%
! TGTTTTACATTTGTCAAGTG+GGG + chr8.3:67710000-67710019 None:intergenic 30.0%
! TTGCTTTAGATTCTGTTCTT+TGG - chr8.3:67709751-67709770 MS.gene84717:CDS 30.0%
! TTTTCATGAGAAGATGAAGA+TGG + chr8.3:67709438-67709457 None:intergenic 30.0%
!! AATTGAAGAAGCATTACCTA+TGG + chr8.3:67709712-67709731 None:intergenic 30.0%
!! ATTCTATGCTTTAAGATCTG+TGG - chr8.3:67710325-67710344 MS.gene84717:CDS 30.0%
!! GTTTGAAGTTGTTGTTTCTT+TGG + chr8.3:67709613-67709632 None:intergenic 30.0%
!! TACTACAACTAGGTTTGTTT+TGG + chr8.3:67710535-67710554 None:intergenic 30.0%
!! TTATCCATCTTTGAAACGTT+TGG + chr8.3:67710353-67710372 None:intergenic 30.0%
!!! GCAATTTTTTTTGCTTCTCA+TGG + chr8.3:67710088-67710107 None:intergenic 30.0%
!!! GTTGTTTTTGTTGCTAATAG+TGG + chr8.3:67710176-67710195 None:intergenic 30.0%
!!! TTTTGTTGTTTGCCACAAAA+TGG + chr8.3:67709538-67709557 None:intergenic 30.0%
AAAAGAGAACCGAAGAAAAG+AGG - chr8.3:67710221-67710240 MS.gene84717:CDS 35.0%
AACTAACGGTGTAATCGAAA+TGG - chr8.3:67709866-67709885 MS.gene84717:CDS 35.0%
ACTAACGGTGTAATCGAAAT+GGG - chr8.3:67709867-67709886 MS.gene84717:CDS 35.0%
GAAATGAAGAGAGCCTAATT+AGG - chr8.3:67710762-67710781 MS.gene84717:CDS 35.0%
GATTATAGGACATGATGCTA+TGG - chr8.3:67710586-67710605 MS.gene84717:CDS 35.0%
GCTTCTTCAATTTCATTACC+CGG - chr8.3:67709720-67709739 MS.gene84717:CDS 35.0%
GGTAAACCTTTCTTATCTTG+GGG - chr8.3:67709567-67709586 MS.gene84717:CDS 35.0%
TGAGAATTGCAGACCTAATT+AGG + chr8.3:67710778-67710797 None:intergenic 35.0%
TTTATCTCTCCTTTGTCTCT+CGG + chr8.3:67710294-67710313 None:intergenic 35.0%
! AAACACATCTTTTGCCAACA+TGG - chr8.3:67710028-67710047 MS.gene84717:CDS 35.0%
! AACACATCTTTTGCCAACAT+GGG - chr8.3:67710029-67710048 MS.gene84717:CDS 35.0%
! ATTTGAGTTTGATTCTGAGG+AGG + chr8.3:67709958-67709977 None:intergenic 35.0%
! CATAGATCCAATTTTCGGAT+TGG + chr8.3:67709515-67709534 None:intergenic 35.0%
! CTTGAAAGATTTGGAGTTTC+AGG - chr8.3:67710661-67710680 MS.gene84717:CDS 35.0%
! GGATGTTTGGAACATAGATT+TGG + chr8.3:67709937-67709956 None:intergenic 35.0%
! GGTTTTCTTCCTCTTTTCTT+CGG + chr8.3:67710233-67710252 None:intergenic 35.0%
! TCTAAAGCAAAAGCTTTACC+GGG + chr8.3:67709741-67709760 None:intergenic 35.0%
! TGTTGGCAAAAGATGTGTTT+TGG + chr8.3:67710028-67710047 None:intergenic 35.0%
! TTCTTTGTTATCAGATGCAG+TGG - chr8.3:67710376-67710395 MS.gene84717:CDS 35.0%
! TTTGGAACATAGATTTGGCT+TGG + chr8.3:67709932-67709951 None:intergenic 35.0%
!!! ATTGGATCTATGCCATTTTG+TGG - chr8.3:67709523-67709542 MS.gene84717:CDS 35.0%
!!! TTTTTTTTGCTTCTCATGGG+TGG + chr8.3:67710084-67710103 None:intergenic 35.0%
ACACTCATTAATCGTGCACT+AGG + chr8.3:67710641-67710660 None:intergenic 40.0%
CACTCATTAATCGTGCACTA+GGG + chr8.3:67710640-67710659 None:intergenic 40.0%
GACAGTAACACGTGTACAAA+CGG - chr8.3:67709642-67709661 MS.gene84717:CDS 40.0%
GGTTCCAAACGTTTCAAAGA+TGG - chr8.3:67710346-67710365 MS.gene84717:CDS 40.0%
TCCAAACCCAATCCGAAAAT+TGG - chr8.3:67709505-67709524 MS.gene84717:CDS 40.0%
TCGATTACACCGTTAGTTGT+AGG + chr8.3:67709864-67709883 None:intergenic 40.0%
TTTACATTTGTCAAGTGGGG+TGG + chr8.3:67709997-67710016 None:intergenic 40.0%
! TGAAGCTTTTGTTGAAGGGT+TGG + chr8.3:67709477-67709496 None:intergenic 40.0%
! TTGATTCTGAGGAGGATGTT+TGG + chr8.3:67709950-67709969 None:intergenic 40.0%
!! TAGATTTGGCTTGGTATACG+AGG + chr8.3:67709923-67709942 None:intergenic 40.0%
!! TCCAATTTTCGGATTGGGTT+TGG + chr8.3:67709509-67709528 None:intergenic 40.0%
CCTTCACCCCAAGATAAGAA+AGG + chr8.3:67709576-67709595 None:intergenic 45.0%
CCTTTCTTATCTTGGGGTGA+AGG - chr8.3:67709573-67709592 MS.gene84717:CDS 45.0%
TCAAACACCGATGAACCATG+TGG - chr8.3:67710265-67710284 MS.gene84717:CDS 45.0%
TCCAATGAAGCACACATGCA+TGG - chr8.3:67709816-67709835 MS.gene84717:CDS 45.0%
TCCATGCATGTGTGCTTCAT+TGG + chr8.3:67709820-67709839 None:intergenic 45.0%
TGCAACGACAACTTCAATCG+TGG - chr8.3:67710505-67710524 MS.gene84717:CDS 45.0%
! GGTGTTTGAGTTCGTGTCAA+CGG + chr8.3:67710254-67710273 None:intergenic 45.0%
!! TGGGGTGAAGGCTATTTTCA+AGG - chr8.3:67709585-67709604 MS.gene84717:CDS 45.0%
!! TGTTGAAGGGTTGGTGTTTG+TGG + chr8.3:67709468-67709487 None:intergenic 45.0%
ACATTTGTCAAGTGGGGTGG+TGG + chr8.3:67709994-67710013 None:intergenic 50.0%
ATGTGGAAGCCGAGAGACAA+AGG - chr8.3:67710282-67710301 MS.gene84717:CDS 50.0%
CTTCTCATGGGTGGCTTCTT+TGG + chr8.3:67710075-67710094 None:intergenic 50.0%
GTACAAACGGCGATGCTGAA+TGG - chr8.3:67709655-67709674 MS.gene84717:CDS 50.0%
TCGGCTTCCACATGGTTCAT+CGG + chr8.3:67710275-67710294 None:intergenic 50.0%
TTTGTCTCTCGGCTTCCACA+TGG + chr8.3:67710283-67710302 None:intergenic 50.0%
!! AGGGTTGGTGTTTGTGGTGA+AGG + chr8.3:67709462-67709481 None:intergenic 50.0%
!! GGGTTGGTGTTTGTGGTGAA+GGG + chr8.3:67709461-67709480 None:intergenic 50.0%
ATGGGTGGCTTCTTTGGCGC+TGG + chr8.3:67710069-67710088 None:intergenic 60.0%
GCCAGAGACGACACCCATGT+TGG + chr8.3:67710045-67710064 None:intergenic 60.0%
! GCCAACATGGGTGTCGTCTC+TGG - chr8.3:67710041-67710060 MS.gene84717:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 67709414 67710808 67709414 ID=MS.gene84717
chr8.3 mRNA 67709414 67710808 67709414 ID=MS.gene84717.t1;Parent=MS.gene84717
chr8.3 exon 67709414 67710808 67709414 ID=MS.gene84717.t1.exon1;Parent=MS.gene84717.t1
chr8.3 CDS 67709414 67710808 67709414 ID=cds.MS.gene84717.t1;Parent=MS.gene84717.t1
Gene Sequence

>MS.gene84717

ATGAAAGATTTCATTATCTCACCATCTTCATCTTCTCATGAAAACCCTTCACCACAAACACCAACCCTTCAACAAAAGCTTCAAATTTTAGTCCAAACCCAATCCGAAAATTGGATCTATGCCATTTTGTGGCAAACAACAAAAGATGAAAAAGGTAAACCTTTCTTATCTTGGGGTGAAGGCTATTTTCAAGGAACCAAAGAAACAACAACTTCAAACAAACAAAACGACAGTAACACGTGTACAAACGGCGATGCTGAATGGTTCTACATGATGTCGATGACTCGAAATTTTTCCATAGGTAATGCTTCTTCAATTTCATTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAACATGAACTTCAAATTTATAACTGTGAGCGATCCAATGAAGCACACATGCATGGAATTGAAACACTGATTTGTATACCTACAACTAACGGTGTAATCGAAATGGGTTCTTATGACAATATACAACAAAATTGGAACCTCGTATACCAAGCCAAATCTATGTTCCAAACATCCTCCTCAGAATCAAACTCAAATTTAGATCTTAACTCCACCACCCCACTTGACAAATGTAAAACATTCATCCAAAACACATCTTTTGCCAACATGGGTGTCGTCTCTGGCGCCAGCGCCAAAGAAGCCACCCATGAGAAGCAAAAAAAATTGCAAGAAAAACATAAAAATGTTTCATCATGTTCTTTAGATTCTGAAGATTCTGATTCAGAATATTGTCCACTATTAGCAACAAAAACAACAACGACAAAGAACGATTCTTTTGAGAAAAGAGAACCGAAGAAAAGAGGAAGAAAACCGTTGACACGAACTCAAACACCGATGAACCATGTGGAAGCCGAGAGACAAAGGAGAGATAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTACATCAATGAGTTAAAAGCAAAGATTGAAGATTTAAAATTAGGGCAACAAAAGGAATCGAAAAAGTTGATGATGAAAACGATGAAAATTGTCGATAATAACAGTGCAACGACAACTTCAATCGTGGTAGACCAAAACAAACCTAGTTGTAGTAAGAATCTTATTGCTTTAGAGATTGATGTGAAGATTATAGGACATGATGCTATGGTGAGAGTTCAAAGTTTGAATGTTAATCACCCTAGTGCACGATTAATGAGTGTCTTGAAAGATTTGGAGTTTCAGGTACATCATGCTAGTATATCGACCGTTAATAAAGTTATAATGGTTCAAGATGTTATTGTTAAAATTCCTAATGAGATGAGAAATGAAGAGAGCCTAATTAGGTCTGCAATTCTCATGAAATTATGA
Protein sequence

>MS.gene84717.t1

MKDFIISPSSSSHENPSPQTPTLQQKLQILVQTQSENWIYAILWQTTKDEKGKPFLSWGEGYFQGTKETTTSNKQNDSNTCTNGDAEWFYMMSMTRNFSIGNASSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHMHGIETLICIPTTNGVIEMGSYDNIQQNWNLVYQAKSMFQTSSSESNSNLDLNSTTPLDKCKTFIQNTSFANMGVVSGASAKEATHEKQKKLQEKHKNVSSCSLDSEDSDSEYCPLLATKTTTTKNDSFEKREPKKRGRKPLTRTQTPMNHVEAERQRRDKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIEDLKLGQQKESKKLMMKTMKIVDNNSATTTSIVVDQNKPSCSKNLIALEIDVKIIGHDAMVRVQSLNVNHPSARLMSVLKDLEFQVHHASISTVNKVIMVQDVIVKIPNEMRNEESLIRSAILMKL