AlfalfaGEDB | MS.gene85094

M. sativa cultivar XinJiangDaYe / MS.gene85094

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF07716.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85094.t1	GAU38258.1	80.1	176	30	1	1	176	1	171	2.60E-59	238.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85094.t1	Q8GTS1	45.0	149	73	4	4	144	10	157	6.5e-19	95.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85094.t1	A0A2Z6N098	80.1	176	30	1	1	176	1	171	1.9e-59	238.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene85094.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85094.t1	MTR_4g073100	48.718	156	62	4	1	144	1	150	5.80e-41	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85094.t1	AT3G51960	49.333	150	66	4	4	144	10	158	1.26e-39	134
MS.gene85094.t1	AT3G51960	49.664	149	66	4	4	144	10	157	1.52e-39	134
MS.gene85094.t1	AT3G51960	56.364	110	42	1	41	144	10	119	2.59e-39	132
MS.gene85094.t1	AT2G16770	48.993	149	59	4	1	144	1	137	3.00e-36	126
MS.gene85094.t1	AT2G16770	48.993	149	59	4	1	144	1	137	3.00e-36	126
MS.gene85094.t1	AT4G35040	45.860	157	67	5	1	144	1	152	4.07e-34	121
MS.gene85094.t1	AT4G35040	45.860	157	67	5	1	144	1	152	4.07e-34	121
MS.gene85094.t1	AT4G35040	45.860	157	67	5	1	144	1	152	4.07e-34	121
MS.gene85094.t1	AT4G35040	45.860	157	67	5	1	144	1	152	4.07e-34	121

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Find 22 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCAGAAACAGCTTATT+TGG	0.185081	3.4:+26176224	MS.gene85094:CDS
AAAGTATAGGGAGAAGAAAA+AGG	0.319200	3.4:+26176206	MS.gene85094:CDS
AACCACATGAGTAGTACTAA+AGG	0.554702	3.4:+26176472	MS.gene85094:CDS
AAGAAAGAAAATATGGATGA+TGG	0.479572	3.4:+26175907	None:intergenic
AAGCTGAATTGTCAAGGTTA+AGG	0.395629	3.4:+26176319	MS.gene85094:CDS
ACACAAATTCAAGGCCAAAG+AGG	0.655610	3.4:+26176157	MS.gene85094:CDS
ACATGCAGGATCATCATCTA+AGG	0.417339	3.4:+26176428	MS.gene85094:intron
CTATTTCCAGAAGTCCTCTT+TGG	0.283237	3.4:-26176171	None:intergenic
CTGAAGATGACACAAATTCA+AGG	0.502147	3.4:+26176148	MS.gene85094:CDS
GAAGTTATTCACTGTATCCA+TGG	0.491570	3.4:-26176500	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTATAGGGAGAAGAAAA+AGG	+	chr3.4:26176206-26176225	MS.gene85094:CDS	30.0%
AAAGGCAGAAACAGCTTATT+TGG	+	chr3.4:26176224-26176243	MS.gene85094:CDS	35.0%
AACCACATGAGTAGTACTAA+AGG	+	chr3.4:26176472-26176491	MS.gene85094:CDS	35.0%
AAGCTGAATTGTCAAGGTTA+AGG	+	chr3.4:26176319-26176338	MS.gene85094:CDS	35.0%
CTGAAGATGACACAAATTCA+AGG	+	chr3.4:26176148-26176167	MS.gene85094:CDS	35.0%
GAAGTTATTCACTGTATCCA+TGG	-	chr3.4:26176503-26176522	None:intergenic	35.0%
GGAAAAGTTGACAATGAACT+AGG	+	chr3.4:26176363-26176382	MS.gene85094:intron	35.0%
TACTTGAAGCTGAATTGTCA+AGG	+	chr3.4:26176313-26176332	MS.gene85094:CDS	35.0%
TAGTACTAAAGGACAAACCA+TGG	+	chr3.4:26176483-26176502	MS.gene85094:CDS	35.0%
TGAAAATTGCTACATGACTC+TGG	-	chr3.4:26175982-26176001	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	26175919	26176552	26175919	ID=MS.gene85094
chr3.4	mRNA	26175919	26176552	26175919	ID=MS.gene85094.t1;Parent=MS.gene85094
chr3.4	exon	26175919	26176350	26175919	ID=MS.gene85094.t1.exon1;Parent=MS.gene85094.t1
chr3.4	CDS	26175919	26176350	26175919	ID=cds.MS.gene85094.t1;Parent=MS.gene85094.t1
chr3.4	exon	26176436	26176552	26176436	ID=MS.gene85094.t1.exon2;Parent=MS.gene85094.t1
chr3.4	CDS	26176436	26176552	26176436	ID=cds.MS.gene85094.t1;Parent=MS.gene85094.t1

Gene Sequence

>MS.gene85094

ATGGATGATGGAAATTCTGAGGTTTCTGATAAACTTTCAGATAATGTTCTATTTTCAAATCCAGAGTCATGTAGCAATTTTCAAACTTCAACATCTATGAACACAGTTACTGAATTGTCTAATAGCACCACAAAAACATGCATTCACGCTCACACTTGTAATCCACCTGGTCCAGATGATGCTTATCACACACACACATGTTTTCATACACATACTCAAGTTTTTGCATCTGAAGATGACACAAATTCAAGGCCAAAGAGGACTTCTGGAAATAGAGAAGCTGTTAAAAAGTATAGGGAGAAGAAAAAGGCAGAAACAGCTTATTTGGAAGAAGAAGTTAAGAAATTGAAACTTGTGAATCAACAACTTTTGAGGAAATTACAAGGGCAGGCACTACTTGAAGCTGAATTGTCAAGGTTAAGGAACATTTTGGTACAACTTAAGGGAAAAGTTGACAATGAACTAGGTTGTTCTTTCCCTTTTGAGAAAAATCTACCATGTTTGCATCCACATGCAGGATCATCATCTAAGGTTAACAATTGTGCATATTGCAAACCACATGAGTAGTACTAAAGGACAAACCATGGATACAGTGAATAACTTCATGTCATCTGCACACAAGTATGATCTCTAA

Protein sequence

>MS.gene85094.t1

MDDGNSEVSDKLSDNVLFSNPESCSNFQTSTSMNTVTELSNSTTKTCIHAHTCNPPGPDDAYHTHTCFHTHTQVFASEDDTNSRPKRTSGNREAVKKYREKKKAETAYLEEEVKKLKLVNQQLLRKLQGQALLEAELSRLRNILDHHLRLTIVHIANHMSSTKGQTMDTVNNFMSSAHKYDL