AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85181

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85181.t1 MTR_2g100490 93.734 399 18 1 1 399 1 392 0.0 722
MS.gene85181.t1 MTR_8g015450 50.870 460 112 21 1 388 1 418 1.11e-104 316
MS.gene85181.t1 MTR_3g101810 62.366 93 34 1 268 360 143 234 8.43e-35 130
MS.gene85181.t1 MTR_8g093500 63.043 92 33 1 269 360 87 177 5.78e-34 127
MS.gene85181.t1 MTR_5g017210 61.682 107 39 2 258 363 98 203 1.76e-28 112
MS.gene85181.t1 MTR_7g069590 52.941 68 32 0 303 370 32 99 7.70e-20 85.9
MS.gene85181.t1 MTR_1g018090 62.963 54 20 0 306 359 283 336 8.68e-17 81.6
MS.gene85181.t1 MTR_5g079500 58.929 56 23 0 304 359 225 280 3.87e-16 79.0
MS.gene85181.t1 MTR_1g106460 49.254 67 34 0 293 359 234 300 7.38e-16 78.6
MS.gene85181.t1 MTR_5g005110 55.357 56 25 0 304 359 231 286 2.04e-15 77.0
MS.gene85181.t1 MTR_1g106470 55.357 56 25 0 304 359 203 258 3.80e-15 75.9
MS.gene85181.t1 MTR_3g103030 50.794 63 31 0 297 359 229 291 9.38e-15 75.1
MS.gene85181.t1 MTR_2g067000 58.491 53 22 0 308 360 168 220 1.50e-13 71.2
MS.gene85181.t1 MTR_1g060700 59.259 54 22 0 307 360 357 410 1.65e-13 72.4
MS.gene85181.t1 MTR_4g131160 55.357 56 25 0 304 359 203 258 1.84e-13 71.6
MS.gene85181.t1 MTR_4g131160 55.357 56 25 0 304 359 206 261 1.93e-13 71.6
MS.gene85181.t1 MTR_1g080890 55.357 56 25 0 304 359 200 255 5.89e-13 70.1
MS.gene85181.t1 MTR_1g106480 52.941 51 24 0 309 359 81 131 9.74e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85181.t1 AT3G21330 54.639 291 118 8 105 391 86 366 3.24e-84 261
MS.gene85181.t1 AT4G00120 61.798 89 33 1 272 360 88 175 1.50e-29 114
MS.gene85181.t1 AT3G50330 52.941 136 60 4 227 360 49 182 4.31e-26 105
MS.gene85181.t1 AT5G67060 64.130 92 32 1 269 360 83 173 7.88e-26 104
MS.gene85181.t1 AT5G67060 64.130 92 32 1 269 360 95 185 9.33e-26 104
MS.gene85181.t1 AT5G09750 62.366 93 34 1 269 361 92 183 3.48e-24 100
MS.gene85181.t1 AT5G01305 57.353 68 29 0 295 362 35 102 1.44e-20 88.6
MS.gene85181.t1 AT1G66470 39.450 109 64 1 251 359 151 257 6.39e-17 81.3
MS.gene85181.t1 AT5G37800 46.067 89 40 1 279 359 175 263 8.61e-17 80.9
MS.gene85181.t1 AT5G43175 46.269 67 36 0 293 359 128 194 2.74e-16 77.8
MS.gene85181.t1 AT4G33880 53.226 62 29 0 298 359 267 328 4.48e-16 79.3
MS.gene85181.t1 AT2G14760 53.226 62 29 0 298 359 238 299 7.44e-16 78.6
MS.gene85181.t1 AT1G27740 50.000 62 31 0 298 359 168 229 6.29e-15 74.7
MS.gene85181.t1 AT4G30980 54.545 66 29 1 295 359 127 192 1.05e-14 74.7
MS.gene85181.t1 AT2G24260 57.143 56 24 0 304 359 42 97 1.43e-14 73.6
MS.gene85181.t1 AT4G30980 54.545 66 29 1 295 359 175 240 1.43e-14 75.1
MS.gene85181.t1 AT2G24260 57.143 56 24 0 304 359 145 200 2.71e-14 73.9
MS.gene85181.t1 AT5G58010 49.275 69 34 1 292 359 93 161 6.18e-13 69.3
MS.gene85181.t1 AT2G14760 44.000 75 29 1 298 359 238 312 9.61e-13 69.3

Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCTTCTACTGAATT+TGG 0.150846 2.4:+3951573 MS.gene85181:CDS
CATCTTGGTTTCTTTGACTT+TGG 0.197671 2.4:-3951621 None:intergenic
ATTTAGGCCGGTGACGAATT+TGG 0.200299 2.4:+3951782 MS.gene85181:CDS
GACAACGAAACTGATGAATT+TGG 0.263742 2.4:-3951687 None:intergenic
GATTTCAATCATGAGAATAT+TGG 0.268623 2.4:-3952121 None:intergenic
AATATTGGATGTTGACATTA+GGG 0.299941 2.4:-3952106 None:intergenic
TACATATGGATTGTATTAGT+TGG 0.305230 2.4:+3950935 None:intergenic
TTCATTTGTGCTATTGCCTC+TGG 0.321358 2.4:-3951735 None:intergenic
TTTAGGCCGGTGACGAATTT+GGG 0.332170 2.4:+3951783 MS.gene85181:CDS
AAGTGATGGAAAAGCCTAAA+AGG 0.336703 2.4:+3951811 MS.gene85181:CDS
AAGGAGAAGGCTATGTTTGC+AGG 0.348753 2.4:-3952059 None:intergenic
GAATATTGGATGTTGACATT+AGG 0.348934 2.4:-3952107 None:intergenic
TGCCTAGCCGCCACAGTTTG+TGG 0.350175 2.4:-3951858 None:intergenic
CTTGGTTTCTTTGACTTTGG+TGG 0.356806 2.4:-3951618 None:intergenic
ACATATGGATTGTATTAGTT+GGG 0.366245 2.4:+3950936 None:intergenic
TGTGCTATTGCCTCTGGATC+AGG 0.366599 2.4:-3951729 None:intergenic
CGAAGGTTCATACCACAAAA+AGG 0.367887 2.4:+3951502 MS.gene85181:CDS
AGAAACAAAGACATGCAATA+TGG 0.369927 2.4:+3951411 MS.gene85181:CDS
TATATAGAGCTGCAGCATTT+AGG 0.373879 2.4:+3951766 MS.gene85181:CDS
TGGTGGGCCATGTTGAATTC+AGG 0.375004 2.4:-3951192 None:intergenic
AACTTTAGTGCAGTTTCCTC+TGG 0.411517 2.4:+3951366 MS.gene85181:CDS
GCCGGTGACGAATTTGGGTT+TGG 0.412280 2.4:+3951788 MS.gene85181:CDS
GTCTTGCAGAAGATTGTTCC+TGG 0.420469 2.4:+3951912 MS.gene85181:CDS
AAACTGATGAATTTGGTTGC+TGG 0.427124 2.4:-3951680 None:intergenic
GGCAGTGACACATAATTGTT+AGG 0.431844 2.4:-3951171 None:intergenic
ACTAATTCTGTTCAAGATGA+TGG 0.443976 2.4:+3951300 MS.gene85181:CDS
CATTGATGCAGTGTCCATCT+TGG 0.445318 2.4:-3951940 None:intergenic
TACTCTTGCTGATTGGTTGG+TGG 0.446984 2.4:-3951209 None:intergenic
GAGATGCAGAAGGTTGAATC+AGG 0.449952 2.4:+3951078 MS.gene85181:CDS
GGTTGAGTGTTCCTCAAGAT+TGG 0.453307 2.4:-3950988 None:intergenic
CTGTGGCGGCTAGGCAAAGA+AGG 0.454660 2.4:+3951865 MS.gene85181:CDS
CTGAAAGTGAAGGGTATGAT+TGG 0.457359 2.4:-3951134 None:intergenic
GGACACTTATTATCCCATCT+TGG 0.463511 2.4:-3951636 None:intergenic
TAGAGCACAAGTCAAAGAAC+TGG 0.468462 2.4:+3951995 MS.gene85181:CDS
TGGATTCAACGAACTAGATC+AGG 0.470318 2.4:+3951431 MS.gene85181:CDS
GTAGTAGTACTCTTGCTGAT+TGG 0.471486 2.4:-3951216 None:intergenic
GTCAAAGAACTGGAGAATCT+AGG 0.474273 2.4:+3952005 MS.gene85181:CDS
AACGGTATCTCCGGCATCCT+CGG 0.479015 2.4:+3951455 MS.gene85181:CDS
CATGGGAATTGACTGGTTGA+AGG 0.490980 2.4:-3952078 None:intergenic
ACTCTTGCTGATTGGTTGGT+GGG 0.498014 2.4:-3951208 None:intergenic
GTTCCTCAAGATTGGTATGT+TGG 0.512590 2.4:-3950980 None:intergenic
TAGTACTCTTGCTGATTGGT+TGG 0.516116 2.4:-3951212 None:intergenic
ATCAGGAGCTGGAAACAGTT+GGG 0.523120 2.4:+3951095 MS.gene85181:CDS
TTACCTTGATCCGAGGATGC+CGG 0.523181 2.4:-3951465 None:intergenic
GAATTTGGGTTTGGAAGTGA+TGG 0.527963 2.4:+3951797 MS.gene85181:CDS
AATCAGGAGCTGGAAACAGT+TGG 0.528348 2.4:+3951094 MS.gene85181:CDS
AGATCAGGAAACGGTATCTC+CGG 0.528893 2.4:+3951446 MS.gene85181:CDS
TCTCCGGCATCCTCGGATCA+AGG 0.535763 2.4:+3951462 MS.gene85181:CDS
AGAGGCAATAGCACAAATGA+AGG 0.541238 2.4:+3951737 MS.gene85181:CDS
CTCTGGATCAGGCTCTTCAA+AGG 0.548876 2.4:-3951718 None:intergenic
CAGAAGGTTGAATCAGGAGC+TGG 0.555841 2.4:+3951084 MS.gene85181:CDS
AGATGGGATAATAAGTGTCC+TGG 0.557228 2.4:+3951639 MS.gene85181:CDS
TTGCCAACATACCAATCTTG+AGG 0.563140 2.4:+3950977 MS.gene85181:CDS
GTGTCCATCTTGGTTCCACC+AGG 0.564056 2.4:-3951930 None:intergenic
TAGTCTCTTGCAAAGTCTTG+TGG 0.568681 2.4:-3951009 None:intergenic
TGTTCCTGGTGGAACCAAGA+TGG 0.571863 2.4:+3951926 MS.gene85181:CDS
TAAAATCATTGATAATTCGA+AGG 0.575851 2.4:+3951485 MS.gene85181:CDS
GAAGGGAAAGAATAAGTGAG+AGG 0.579170 2.4:+3951883 MS.gene85181:CDS
TCCAAACCCAAATTCGTCAC+CGG 0.582453 2.4:-3951789 None:intergenic
ATCCACAAACTGTGGCGGCT+AGG 0.587768 2.4:+3951856 MS.gene85181:CDS
CAACGAACTAGATCAGGAAA+CGG 0.587929 2.4:+3951437 MS.gene85181:CDS
AATTGACTGGTTGAAGGAGA+AGG 0.590555 2.4:-3952072 None:intergenic
CAAAGTCAAAGAAACCAAGA+TGG 0.591227 2.4:+3951622 MS.gene85181:CDS
GTCAGTGTTACTGTTAGTAG+TGG 0.594081 2.4:-3951277 None:intergenic
TCTATATTGACTGAAAGTGA+AGG 0.595172 2.4:-3951144 None:intergenic
TAGAGCTGCAGCATTTAGGC+CGG 0.600006 2.4:+3951770 MS.gene85181:CDS
AAAGTCAAAGAAACCAAGAT+GGG 0.607623 2.4:+3951623 MS.gene85181:CDS
CTTTGAAGAGCCTGATCCAG+AGG 0.622335 2.4:+3951719 MS.gene85181:CDS
CTATATTGACTGAAAGTGAA+GGG 0.624533 2.4:-3951143 None:intergenic
TGAGTAGTAATGCTGAAGCA+AGG 0.639766 2.4:-3951546 None:intergenic
AAATTGATATTTGATGAACC+AGG 0.643576 2.4:-3951657 None:intergenic
TTGCAGAAGATTGTTCCTGG+TGG 0.647074 2.4:+3951915 MS.gene85181:CDS
ATCAAATGATCCACAAACTG+TGG 0.655439 2.4:+3951848 MS.gene85181:CDS
TCAAATGCAAGAGATGCAGA+AGG 0.662578 2.4:+3951068 MS.gene85181:CDS
AAATGATCCACAAACTGTGG+CGG 0.666151 2.4:+3951851 MS.gene85181:CDS
TGTGGCGGCTAGGCAAAGAA+GGG 0.669512 2.4:+3951866 MS.gene85181:CDS
GAGAAGGCTATGTTTGCAGG+AGG 0.669932 2.4:-3952056 None:intergenic
CTTGTGCTCTAAGAAACTTG+AGG 0.702293 2.4:-3951983 None:intergenic
AGTGACACATAATTGTTAGG+TGG 0.716025 2.4:-3951168 None:intergenic
GTCACTGCCTGAATTCAACA+TGG 0.722376 2.4:+3951185 MS.gene85181:CDS
AGTACTCTCAGATTCACCAG+AGG 0.741327 2.4:-3951382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATCATTGATAATTCGA+AGG + chr2.4:3951485-3951504 MS.gene85181:CDS 20.0%
! AAATTGATATTTGATGAACC+AGG - chr2.4:3951660-3951679 None:intergenic 25.0%
! AATATTGGATGTTGACATTA+GGG - chr2.4:3952109-3952128 None:intergenic 25.0%
! AGTTAAAAACACTTGAACTT+GGG - chr2.4:3951047-3951066 None:intergenic 25.0%
! TAGTTAAAAACACTTGAACT+TGG - chr2.4:3951048-3951067 None:intergenic 25.0%
!! ATCAATATTAGTCCTTTTTG+TGG - chr2.4:3951517-3951536 None:intergenic 25.0%
!! ATCTTAACATTCTTCCTTTT+AGG - chr2.4:3951828-3951847 None:intergenic 25.0%
AAAGTCAAAGAAACCAAGAT+GGG + chr2.4:3951623-3951642 MS.gene85181:CDS 30.0%
ACTAATTCTGTTCAAGATGA+TGG + chr2.4:3951300-3951319 MS.gene85181:CDS 30.0%
ACTGCAAAAACAGAAACTTA+TGG + chr2.4:3951343-3951362 MS.gene85181:CDS 30.0%
AGAAACAAAGACATGCAATA+TGG + chr2.4:3951411-3951430 MS.gene85181:CDS 30.0%
GAATATTGGATGTTGACATT+AGG - chr2.4:3952110-3952129 None:intergenic 30.0%
TCTTCTTCTTCTACTGAATT+TGG + chr2.4:3951573-3951592 MS.gene85181:CDS 30.0%
TTTGCAGTCAGAAAAAATCA+TGG - chr2.4:3951331-3951350 None:intergenic 30.0%
! CTATATTGACTGAAAGTGAA+GGG - chr2.4:3951146-3951165 None:intergenic 30.0%
! TCTATATTGACTGAAAGTGA+AGG - chr2.4:3951147-3951166 None:intergenic 30.0%
AAAAACACTTGAACTTGGGT+TGG - chr2.4:3951043-3951062 None:intergenic 35.0%
AAACTGATGAATTTGGTTGC+TGG - chr2.4:3951683-3951702 None:intergenic 35.0%
AGTGACACATAATTGTTAGG+TGG - chr2.4:3951171-3951190 None:intergenic 35.0%
ATCAAATGATCCACAAACTG+TGG + chr2.4:3951848-3951867 MS.gene85181:CDS 35.0%
CAAAGTCAAAGAAACCAAGA+TGG + chr2.4:3951622-3951641 MS.gene85181:CDS 35.0%
GACAACGAAACTGATGAATT+TGG - chr2.4:3951690-3951709 None:intergenic 35.0%
TATATAGAGCTGCAGCATTT+AGG + chr2.4:3951766-3951785 MS.gene85181:CDS 35.0%
! AAGTGATGGAAAAGCCTAAA+AGG + chr2.4:3951811-3951830 MS.gene85181:CDS 35.0%
! AATGATTTTACCTTGATCCG+AGG - chr2.4:3951475-3951494 None:intergenic 35.0%
! CATCTTGGTTTCTTTGACTT+TGG - chr2.4:3951624-3951643 None:intergenic 35.0%
! TTGACATTAGGGTTTTGCAT+GGG - chr2.4:3952098-3952117 None:intergenic 35.0%
AAATGATCCACAAACTGTGG+CGG + chr2.4:3951851-3951870 MS.gene85181:CDS 40.0%
AACTTTAGTGCAGTTTCCTC+TGG + chr2.4:3951366-3951385 MS.gene85181:CDS 40.0%
AGAGGCAATAGCACAAATGA+AGG + chr2.4:3951737-3951756 MS.gene85181:CDS 40.0%
AGATGGGATAATAAGTGTCC+TGG + chr2.4:3951639-3951658 MS.gene85181:CDS 40.0%
CAACGAACTAGATCAGGAAA+CGG + chr2.4:3951437-3951456 MS.gene85181:CDS 40.0%
CGAAGGTTCATACCACAAAA+AGG + chr2.4:3951502-3951521 MS.gene85181:CDS 40.0%
GAAGGGAAAGAATAAGTGAG+AGG + chr2.4:3951883-3951902 MS.gene85181:CDS 40.0%
GGACACTTATTATCCCATCT+TGG - chr2.4:3951639-3951658 None:intergenic 40.0%
GGCAGTGACACATAATTGTT+AGG - chr2.4:3951174-3951193 None:intergenic 40.0%
GTAGTAGTACTCTTGCTGAT+TGG - chr2.4:3951219-3951238 None:intergenic 40.0%
GTCAAAGAACTGGAGAATCT+AGG + chr2.4:3952005-3952024 MS.gene85181:CDS 40.0%
GTTCCTCAAGATTGGTATGT+TGG - chr2.4:3950983-3951002 None:intergenic 40.0%
TAGAGCACAAGTCAAAGAAC+TGG + chr2.4:3951995-3952014 MS.gene85181:CDS 40.0%
TAGTCTCTTGCAAAGTCTTG+TGG - chr2.4:3951012-3951031 None:intergenic 40.0%
TCAAATGCAAGAGATGCAGA+AGG + chr2.4:3951068-3951087 MS.gene85181:CDS 40.0%
TGAGTAGTAATGCTGAAGCA+AGG - chr2.4:3951549-3951568 None:intergenic 40.0%
TGGATTCAACGAACTAGATC+AGG + chr2.4:3951431-3951450 MS.gene85181:CDS 40.0%
TTGCCAACATACCAATCTTG+AGG + chr2.4:3950977-3950996 MS.gene85181:CDS 40.0%
! AATTGACTGGTTGAAGGAGA+AGG - chr2.4:3952075-3952094 None:intergenic 40.0%
! CTGAAAGTGAAGGGTATGAT+TGG - chr2.4:3951137-3951156 None:intergenic 40.0%
! CTTGGTTTCTTTGACTTTGG+TGG - chr2.4:3951621-3951640 None:intergenic 40.0%
! GAATTTGGGTTTGGAAGTGA+TGG + chr2.4:3951797-3951816 MS.gene85181:CDS 40.0%
! GTCAGTGTTACTGTTAGTAG+TGG - chr2.4:3951280-3951299 None:intergenic 40.0%
! GTTGACATTAGGGTTTTGCA+TGG - chr2.4:3952099-3952118 None:intergenic 40.0%
! TAGTACTCTTGCTGATTGGT+TGG - chr2.4:3951215-3951234 None:intergenic 40.0%
! TTCATTTGTGCTATTGCCTC+TGG - chr2.4:3951738-3951757 None:intergenic 40.0%
!! CTTGTGCTCTAAGAAACTTG+AGG - chr2.4:3951986-3952005 None:intergenic 40.0%
AAGGAGAAGGCTATGTTTGC+AGG - chr2.4:3952062-3952081 None:intergenic 45.0%
AATCAGGAGCTGGAAACAGT+TGG + chr2.4:3951094-3951113 MS.gene85181:CDS 45.0%
AGATCAGGAAACGGTATCTC+CGG + chr2.4:3951446-3951465 MS.gene85181:CDS 45.0%
AGTACTCTCAGATTCACCAG+AGG - chr2.4:3951385-3951404 None:intergenic 45.0%
ATCAGGAGCTGGAAACAGTT+GGG + chr2.4:3951095-3951114 MS.gene85181:CDS 45.0%
ATTTAGGCCGGTGACGAATT+TGG + chr2.4:3951782-3951801 MS.gene85181:CDS 45.0%
CATTGATGCAGTGTCCATCT+TGG - chr2.4:3951943-3951962 None:intergenic 45.0%
GAGATGCAGAAGGTTGAATC+AGG + chr2.4:3951078-3951097 MS.gene85181:CDS 45.0%
GGTTGAGTGTTCCTCAAGAT+TGG - chr2.4:3950991-3951010 None:intergenic 45.0%
GTCACTGCCTGAATTCAACA+TGG + chr2.4:3951185-3951204 MS.gene85181:CDS 45.0%
GTCTTGCAGAAGATTGTTCC+TGG + chr2.4:3951912-3951931 MS.gene85181:CDS 45.0%
TCCAAACCCAAATTCGTCAC+CGG - chr2.4:3951792-3951811 None:intergenic 45.0%
TTGCAGAAGATTGTTCCTGG+TGG + chr2.4:3951915-3951934 MS.gene85181:CDS 45.0%
TTTAGGCCGGTGACGAATTT+GGG + chr2.4:3951783-3951802 MS.gene85181:CDS 45.0%
! ACTCTTGCTGATTGGTTGGT+GGG - chr2.4:3951211-3951230 None:intergenic 45.0%
! CATGGGAATTGACTGGTTGA+AGG - chr2.4:3952081-3952100 None:intergenic 45.0%
! GGTTTTGCATGGGAATTGAC+TGG - chr2.4:3952088-3952107 None:intergenic 45.0%
! TACTCTTGCTGATTGGTTGG+TGG - chr2.4:3951212-3951231 None:intergenic 45.0%
CAGAAGGTTGAATCAGGAGC+TGG + chr2.4:3951084-3951103 MS.gene85181:CDS 50.0%
CTCTGGATCAGGCTCTTCAA+AGG - chr2.4:3951721-3951740 None:intergenic 50.0%
GAGAAGGCTATGTTTGCAGG+AGG - chr2.4:3952059-3952078 None:intergenic 50.0%
TAGAGCTGCAGCATTTAGGC+CGG + chr2.4:3951770-3951789 MS.gene85181:CDS 50.0%
TGTTCCTGGTGGAACCAAGA+TGG + chr2.4:3951926-3951945 MS.gene85181:CDS 50.0%
TTACCTTGATCCGAGGATGC+CGG - chr2.4:3951468-3951487 None:intergenic 50.0%
! CTTTGAAGAGCCTGATCCAG+AGG + chr2.4:3951719-3951738 MS.gene85181:CDS 50.0%
! TGGTGGGCCATGTTGAATTC+AGG - chr2.4:3951195-3951214 None:intergenic 50.0%
! TGTGCTATTGCCTCTGGATC+AGG - chr2.4:3951732-3951751 None:intergenic 50.0%
AACGGTATCTCCGGCATCCT+CGG + chr2.4:3951455-3951474 MS.gene85181:CDS 55.0%
ATCCACAAACTGTGGCGGCT+AGG + chr2.4:3951856-3951875 MS.gene85181:CDS 55.0%
GTGTCCATCTTGGTTCCACC+AGG - chr2.4:3951933-3951952 None:intergenic 55.0%
TGTGGCGGCTAGGCAAAGAA+GGG + chr2.4:3951866-3951885 MS.gene85181:CDS 55.0%
! GCCGGTGACGAATTTGGGTT+TGG + chr2.4:3951788-3951807 MS.gene85181:CDS 55.0%
CTGTGGCGGCTAGGCAAAGA+AGG + chr2.4:3951865-3951884 MS.gene85181:CDS 60.0%
TCTCCGGCATCCTCGGATCA+AGG + chr2.4:3951462-3951481 MS.gene85181:CDS 60.0%
TGCCTAGCCGCCACAGTTTG+TGG - chr2.4:3951861-3951880 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 3950940 3952139 3950940 ID=MS.gene85181
chr2.4 mRNA 3950940 3952139 3950940 ID=MS.gene85181.t1;Parent=MS.gene85181
chr2.4 exon 3950940 3952139 3950940 ID=MS.gene85181.t1.exon1;Parent=MS.gene85181.t1
chr2.4 CDS 3950940 3952139 3950940 ID=cds.MS.gene85181.t1;Parent=MS.gene85181.t1
Gene Sequence

>MS.gene85181

ATGGATTGTATTAGTTGGGATGATGACTCACAATTTGTTGCCAACATACCAATCTTGAGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAGATGCAGAAGGTTGAATCAGGAGCTGGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATAGATCCACCTAACAATTATGTGTCACTGCCTGAATTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACTAACAGTAACACTGACACTAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCCTCTGGTGAATCTGAGAGTACTTATGCTAGAAACAAAGACATGCAATATGGATTCAACGAACTAGATCAGGAAACGGTATCTCCGGCATCCTCGGATCAAGGTAAAATCATTGATAATTCGAAGGTTCATACCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCGTTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGAGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGAACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTCCTCCTGCAAACATAGCCTTCTCCTTCAACCAGTCAATTCCCATGCAAAACCCTAATGTCAACATCCAATATTCTCATGATTGA
Protein sequence

>MS.gene85181.t1

MDCISWDDDSQFVANIPILRNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVESGAGNSWEETLIFQSYPSLSVNIDPPNNYVSLPEFNMAHQPISKSTTTCSLESSLDCLLSATTNSNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESESTYARNKDMQYGFNELDQETVSPASSDQGKIIDNSKVHTTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKELENLGNKIDTMNNCPPANIAFSFNQSIPMQNPNVNIQYSHD