AlfalfaGEDB | MS.gene85194

M. sativa cultivar XinJiangDaYe / MS.gene85194

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85194.t1	XP_003597625.1	98.1	695	13	0	1	695	1	695	0.00E+00	1364.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85194.t1	P0DH62	45.0	585	214	9	105	685	5	485	3.6e-126	453.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85194.t1	G7ZWH4	98.1	695	13	0	1	695	1	695	0.0e+00	1364.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85194.t1	MTR_2g100290	98.129	695	13	0	1	695	1	695	0.0	1418
MS.gene85194.t1	MTR_8g016120	79.797	688	131	7	1	685	1	683	0.0	1077
MS.gene85194.t1	MTR_8g016120	78.374	578	117	7	1	575	1	573	0.0	874
MS.gene85194.t1	MTR_8g101670	63.120	686	235	9	7	683	4	680	0.0	857
MS.gene85194.t1	MTR_8g101670	63.166	676	231	9	7	673	4	670	0.0	843
MS.gene85194.t1	MTR_8g101670	64.036	659	221	8	21	672	8	657	0.0	840
MS.gene85194.t1	MTR_1g021570	45.467	717	330	17	6	685	9	701	0.0	554
MS.gene85194.t1	MTR_1g021570	45.250	579	264	14	6	555	9	563	7.27e-147	440
MS.gene85194.t1	MTR_1g021570	45.329	578	260	14	144	685	1	558	1.56e-143	432
MS.gene85194.t1	MTR_1g021570	45.230	566	254	14	156	685	1	546	6.18e-139	420

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85194.t1	AT3G13690	74.501	702	163	10	1	693	1	695	0.0	1037
MS.gene85194.t1	AT3G13690	74.501	702	163	10	1	693	1	695	0.0	1037
MS.gene85194.t1	AT3G13690	74.501	702	163	10	1	693	1	695	0.0	1037
MS.gene85194.t1	AT1G55200	70.511	685	170	11	1	683	1	655	0.0	956
MS.gene85194.t1	AT1G55200	70.511	685	170	11	1	683	1	655	0.0	956
MS.gene85194.t1	AT1G55200	70.511	685	170	11	1	683	1	655	0.0	956
MS.gene85194.t1	AT1G55200	70.511	685	170	11	1	683	1	655	0.0	956
MS.gene85194.t1	AT5G56790	61.029	680	246	7	7	683	3	666	0.0	801
MS.gene85194.t1	AT3G24550	50.482	311	143	3	374	680	253	556	4.20e-99	318
MS.gene85194.t1	AT1G70460	53.156	301	132	4	387	680	333	631	1.60e-98	318

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Find 166 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTACTAACCTTCTTT+GGG	0.412011	2.4:-4095499	None:intergenic
AAAGGTTATTGTTGCTGTCA+AGG	0.521433	2.4:+4094678	MS.gene85194:CDS
AAATTCCATGTTAGTCTTAT+AGG	0.163193	2.4:-4096437	None:intergenic
AACAATGCTGGGAGCTAGTT+CGG	0.406746	2.4:+4095412	MS.gene85194:CDS
AACTCATGTTGTTCAACCTG+GGG	0.590038	2.4:+4094741	MS.gene85194:CDS
AACTGAAGTTGGAACTTCAT+CGG	0.518335	2.4:+4096093	MS.gene85194:CDS
AAGACTAACATGGAATTTAC+TGG	0.314128	2.4:+4096442	MS.gene85194:CDS
AAGCGAGGGAAGCATGAAAA+AGG	0.361499	2.4:+4094640	MS.gene85194:CDS
AAGGCTGATGTTTATTCCTT+TGG	0.307621	2.4:+4097670	MS.gene85194:CDS
AAGTCACTATTCAGAACATG+AGG	0.650720	2.4:+4098009	MS.gene85194:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGACTAACATGGAATTTAC+TGG	+	chr2.4:4096442-4096461	MS.gene85194:CDS	30.0%
AAGTGGACAAATAACTGAAA+AGG	+	chr2.4:4097651-4097670	MS.gene85194:CDS	30.0%
AATGTGATGTGGTTTATGTT+TGG	+	chr2.4:4094965-4094984	MS.gene85194:intron	30.0%
ACTAGAGTTATTGGAACATT+TGG	+	chr2.4:4097514-4097533	MS.gene85194:CDS	30.0%
ATATGTCCTTAAGCTATACT+AGG	+	chr2.4:4097066-4097085	MS.gene85194:intron	30.0%
ATATTGAACATAATGGTGGT+GGG	-	chr2.4:4096513-4096532	None:intergenic	30.0%
ATTTCATCTATCTGCTGTAA+TGG	+	chr2.4:4097402-4097421	MS.gene85194:intron	30.0%
CAATCAACATAACAACATTC+CGG	-	chr2.4:4096774-4096793	None:intergenic	30.0%
CTAGAGTTATTGGAACATTT+GGG	+	chr2.4:4097515-4097534	MS.gene85194:CDS	30.0%
CTGTTTCAATCAAAGTTCAA+CGG	-	chr2.4:4098178-4098197	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	4094622	4098441	4094622	ID=MS.gene85194
chr2.4	mRNA	4094622	4098441	4094622	ID=MS.gene85194.t1;Parent=MS.gene85194
chr2.4	exon	4094622	4094805	4094622	ID=MS.gene85194.t1.exon1;Parent=MS.gene85194.t1
chr2.4	CDS	4094622	4094805	4094622	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4095351	4095508	4095351	ID=MS.gene85194.t1.exon2;Parent=MS.gene85194.t1
chr2.4	CDS	4095351	4095508	4095351	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4095591	4095685	4095591	ID=MS.gene85194.t1.exon3;Parent=MS.gene85194.t1
chr2.4	CDS	4095591	4095685	4095591	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4095829	4096871	4095829	ID=MS.gene85194.t1.exon4;Parent=MS.gene85194.t1
chr2.4	CDS	4095829	4096871	4095829	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4097176	4097336	4097176	ID=MS.gene85194.t1.exon5;Parent=MS.gene85194.t1
chr2.4	CDS	4097176	4097336	4097176	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4097460	4097536	4097460	ID=MS.gene85194.t1.exon6;Parent=MS.gene85194.t1
chr2.4	CDS	4097460	4097536	4097460	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4097627	4097774	4097627	ID=MS.gene85194.t1.exon7;Parent=MS.gene85194.t1
chr2.4	CDS	4097627	4097774	4097627	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4097953	4098102	4097953	ID=MS.gene85194.t1.exon8;Parent=MS.gene85194.t1
chr2.4	CDS	4097953	4098102	4097953	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1
chr2.4	exon	4098370	4098441	4098370	ID=MS.gene85194.t1.exon9;Parent=MS.gene85194.t1
chr2.4	CDS	4098370	4098441	4098370	ID=cds.MS.gene85194.t1;Parent=MS.gene85194.t1

Gene Sequence

>MS.gene85194

ATGAGTCGAGAACAATCGAAGCGAGGGAAGCATGAAAAAGGTTCTGATGGTGCTGGAAAGGTTATTGTTGCTGTCAAGGCGTCAAAGGAAGTTCCAAAGAGTGCTCTTGTTTGGTCTCTAACTCATGTTGTTCAACCTGGGGATTGCATTACATTGCTAGTGGTTGTTCCTTCACAAAATTCAGGTCATTTTTCTATTGCATTCTTTTGTTTTGTTATTTGTTGGTGCATGTCCTTTTTGATATATGTGATTCTTAACTAAGTGTGTGTTCAGTTCTGCAGTGACAAAAGTTGATTTTGAATCAAATGATTGTGTAAAATTGATTTTAGTTAAAAATGAGTTGAATGTGATGTGGTTTATGTTTGGATACAGTTACATTAAAGTGACTTAAATAATAAATTTGAGTGTGAATCAAAAGCTACAAATCTTAGTTTCAAGTTAAAATCAATTTTTTAGGCTAAATCACTTTTGACTCTCCCTACTTTGAAACTAAACATACGCTAAATCATTTGGTTCTTATACTATTGTCATAAAGATTTATTTACTTTTTATAACCATTATAGATTTAGTTTTGTAATTTTGTTTTGTTATCTGAACATAAAGGTTGTAGGATGACATGGTTTGATTTAACTTCTCTTGATTCTTGAAGACTTTGGACTTTGTTATTCGTTTATTTGAACCTTCACTCTTCCTCTTTGTGTAATTAACTATGTTACTGCACCTACATAGGCCGAAAATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCTAATGGACACAAGAAGTCAACAATGCTGGGAGCTAGTTCGGAGCACAAAAATGATATAACTGATTCTTGCTCTCAAATGATCCTTCAGCTTCATGATGTCTATGACCCAAAGAAGGTTAGTAGCCTTTATGTATAAAGGTTTATTGTGTGCTGTGTTTGTATCGATATATGCTAAGCTAATCGTTGTTGTTTGACAGATAAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCCGCAGAAGCCAAGAAAGCTCAAGCCAATTGGGTCGTATTAGATAAGTAATAGTCTATCTATATTGTATAATTTGTATTAGAAATTCGAAACAAAATTGATGAATTCTCAATTTCTGGTATACTATTTTATTGAACTGTGATTATAATTTGGTTTGTGTTCTTGTATTTTGGTATTGCTTTCTTTACAGACAGCTCAAGCACGAGGAAAAACAATGCATGGAAGAGCTGCAGTGCAACATTGCGGTTATGAAAGGTTCCCAAGCTAAGGTGCTTCGCTTGAATTTGGTTGGATCGCAAAAGAAGGATCTTGAAGAAACATGTCCATTATCTTCCGAGCAGTGTGTGATGCCTGGAAAACAATCAAAGAAGAAAAACGGCTCTTTAAATTCCACCACAATAGGACAAGTTGTCACGCCTACTAGCAGCCCCGAGCTAGAGACATCATTTACTGCAACTGAAGTTGGAACTTCATCGGTTTCAAGCTCTGATCCTGGAACTTCACCGTTTTTCGCCTCTGAGATCATTGTCGAGTCAAAGAAAGAGGAAACTATCACTGAAAATCAAGAAACTGATGATATCATTTCTGACACAGACAGTGAAAATTTGTCTGCTTCTTCAGCAAGCTTGAGGTTTCAGCCGTGGATTGCAGATTTATTTTTACATAAACAATCATCTCAACGTGAAGACGAAACATCGGACTCAGAGAGATCTTGTGACAGGCTTCAAATGTCTACAACTAGAGCATTGCTAGAAAAGTTCTCAAGGCTTGACAGAGAAGCCGAAATTGAAAACTCAACCTATAAGACTAACATGGAATTTACTGGAAGCGTGAGAGAAGCGGTAGCATTATCTAGAAACGCCGCACCTGGCCCACCACCATTATGTTCAATATGTCAACACAAAGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTGGAGCTAGCCACTGGTGGATTTTCACCAGCCAACTTCTTGGCAGAAGGAGGTTTTGGATCTGTTCACAGAGGAGTTCTACCAGAAGGGCAAGTCATTGCTGTTAAGCAACATAAATTGGCTAGTTCTCAAGGGGATCATGAATTCTGCTCAGAGGTAGAAGTCCTGAGTTGTGCACAGCACCGGAATGTTGTTATGTTGATTGGCTTCTGTATTGAGGATAAAAGAAGGCTGCTGGTGTATGAATATATATGCAATGGATCATTAGACACTCATTTATATGGTAATTTCTTTTTGCTTCTATACTAAATGATGTCGTGATAGAATTGTGTTTCTGAATTTGCTTGAACTTACTGGAAGTCATTCTGATTCATGATTCAATGTGCAATAATATTTTAGTCCATAAAATGCCAAGTTCATGTATGTTAACGGAAACCATTAGAATAGTATTTCAATTCGAAAAGCTAACGGATTTATATATGTCCTTAAGCTATACTAGGACTGGCTATATATATTGGCTAAATGTTACTGGTGATACTGTCTTGACTGTAGTTTGTAAATTAATACGTGACTTGGAAATCTTTCAGGGAGACAACGGAAACCATTAGAATGGTCAGCTCGTCAGAAAATTGCTGTTGGGGCTGCTCGAGGATTGCGATATCTTCATGAAGAGTGCAGGGTGGGATGCATTGTTCACCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCACTGGTAGTGTTCTGTTTGTCCTGGCTTGTGCAATAGAATCTTTATATTCTATAACTAATGTCATAATTATTTCATCTATCTGCTGTAATGGTCAATTCATTAATTGATTGTCGTAAATTCTACCAGGTTGGTGATTTTGGACTTGCAAGGTGGCAGCCTGATGGAGACACTGGAGAGGAGACTAGAGTTATTGGAACATTTGGGTATGTGGTCTTTTACTCCTTAATTAGTTCTGTTGCTAACTATACAATGCAATAACAATGATGCAATTAACCTATGCTGCCGCTATATAGGTATTTGGCTCCTGAATATACTCAAAGTGGACAAATAACTGAAAAGGCTGATGTTTATTCCTTTGGAGTGGTATTAGTGGAGCTTGTGACAGGGCGCAAAGCTGTGGATATCAACCGGCCCAAGGGACAACAGTGTCTTACTGAGTGGGTAAGTTAAATGACATTTCTATCTAATTAATTGTGTTTCTTAAATTATCAGTTAATGGCATCATTTCAAGATTTTTAAATATTATTGTTCAAGAGAAATTTGACAGTAGAGTTATGAAATTTTCGCTTGTTCATGACTTTCCTTGAGTAATTGTCGGAGGGATTTGGATTATAAACAGGCACGACCACTGTTAGAAGAGTACGCCATCGAGGAACTGATTGATCCGAGGTTGGGAAGTCACTATTCAGAACATGAGGTCTCTTGCATGATACATACGGCATCCTTATGCATAAGACGAGATCCTTATTCTAGACCACGCATGTCACAGGTAAAGAAAACTTCTTGGAACAGATTTTTTATCTTGTTGAAGTTGTATACGACTGTGTTACAATTGCATATTCCGTTGAACTTTGATTGAAACAGATATAGGTTTTATTCTTACCTTAGTTATTTGACACGCGAGAAAAACAATGGCTTCATTCTAATATATTTTGGCATACAGTTACCCTATGACCTTGATTCTTGACATTTTGTTACATCGTTTTATGGTTTCCTCGCCTGAGCTTGATGTTATACTTGTGCTTATTTGATCAAGGTTTTGCGAATACTAGAAGGGGACACGGTCGTGGAATCGCCACGCCATTACGGTGGTTCTCCTTCCCTTTGA

Protein sequence

>MS.gene85194.t1

MSREQSKRGKHEKGSDGAGKVIVAVKASKEVPKSALVWSLTHVVQPGDCITLLVVVPSQNSGRKLWGFPRFAGDCANGHKKSTMLGASSEHKNDITDSCSQMILQLHDVYDPKKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIAVMKGSQAKVLRLNLVGSQKKDLEETCPLSSEQCVMPGKQSKKKNGSLNSTTIGQVVTPTSSPELETSFTATEVGTSSVSSSDPGTSPFFASEIIVESKKEETITENQETDDIISDTDSENLSASSASLRFQPWIADLFLHKQSSQREDETSDSERSCDRLQMSTTRALLEKFSRLDREAEIENSTYKTNMEFTGSVREAVALSRNAAPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSPANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQRKPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGEETRVIGTFGYLAPEYTQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVSCMIHTASLCIRRDPYSRPRMSQVLRILEGDTVVESPRHYGGSPSL