AlfalfaGEDB | MS.gene85247

M. sativa cultivar XinJiangDaYe / MS.gene85247

KEGG: K08064
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005667 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02045.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85247.t1	XP_024633082.1	96.5	345	12	0	1	345	1	345	1.80E-186	661.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85247.t1	Q9LNP6	39.8	357	154	14	10	345	12	328	7.9e-42	172.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85247.t1	A0A396JG16	96.5	345	12	0	1	345	1	345	1.3e-186	661.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene85247.t1	TF	NF-YA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85247.t1	MTR_2g099490	95.965	347	12	1	1	345	1	347	0.0	694
MS.gene85247.t1	MTR_2g099490	92.464	345	12	1	1	345	1	331	0.0	662
MS.gene85247.t1	MTR_8g019540	51.765	340	119	12	23	345	7	318	9.56e-86	261
MS.gene85247.t1	MTR_2g041090	55.147	136	49	4	121	253	19	145	8.91e-40	140
MS.gene85247.t1	MTR_2g030170	52.174	115	51	2	168	282	95	205	4.95e-33	122
MS.gene85247.t1	MTR_2g030170	52.174	115	51	2	168	282	128	238	1.92e-32	121
MS.gene85247.t1	MTR_8g037270	56.311	103	40	1	144	246	117	214	1.31e-30	118
MS.gene85247.t1	MTR_3g061510	49.624	133	52	3	114	246	112	229	1.82e-30	118
MS.gene85247.t1	MTR_3g061510	49.624	133	52	3	114	246	132	249	2.35e-30	118
MS.gene85247.t1	MTR_7g106450	51.000	100	40	3	147	246	136	226	5.42e-24	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85247.t1	AT1G17590	38.873	355	160	13	10	345	12	328	3.37e-56	186
MS.gene85247.t1	AT1G17590	38.873	355	160	13	10	345	12	328	3.37e-56	186
MS.gene85247.t1	AT1G17590	38.873	355	160	13	10	345	12	328	3.37e-56	186
MS.gene85247.t1	AT1G17590	38.873	355	160	13	10	345	12	328	3.37e-56	186
MS.gene85247.t1	AT1G72830	36.088	363	187	13	2	345	4	340	8.56e-50	170
MS.gene85247.t1	AT1G72830	35.989	364	187	14	2	345	4	341	3.75e-48	166
MS.gene85247.t1	AT1G54160	38.281	256	107	8	22	250	11	242	1.11e-39	142
MS.gene85247.t1	AT3G14020	37.500	328	138	16	20	319	13	301	5.38e-39	140
MS.gene85247.t1	AT3G14020	37.500	328	138	16	20	319	13	301	5.38e-39	140
MS.gene85247.t1	AT1G72830	33.978	362	171	13	2	345	4	315	2.60e-38	139

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Find 79 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTGACCAGCTTCTTC+AGG	0.334629	2.4:-4739040	MS.gene85247:CDS
AACAATATGGGATGTCTCAT+CGG	0.507452	2.4:-4739710	MS.gene85247:CDS
AACCAGTAGAAGAACAATGC+TGG	0.515161	2.4:+4739756	None:intergenic
AACTCAGTGCTTTACTGTTG+TGG	0.539967	2.4:+4740559	None:intergenic
AAGAGAGCTAGAGGTGCCGG+TGG	0.680129	2.4:-4738738	MS.gene85247:CDS
AATTCCCTTGCCATCTGATA+TGG	0.316404	2.4:-4738989	MS.gene85247:CDS
AATTCTGACCAGCTTCTTCA+GGG	0.474643	2.4:-4739039	MS.gene85247:CDS
ACATCCCATATTGTTCTCCT+CGG	0.546379	2.4:+4739718	None:intergenic
ACCCTTCTTCTCAGACTGGA+AGG	0.577435	2.4:-4738485	MS.gene85247:CDS
AGAACCGAGGAGAACAATAT+GGG	0.525995	2.4:-4739722	MS.gene85247:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGGAATTTGTCTTGGA+TGG	-	chr2.4:4739059-4739078	MS.gene85247:CDS	30.0%
AGCACATAACAAACTCATAA+AGG	-	chr2.4:4740237-4740256	MS.gene85247:intron	30.0%
ATGATTTATGAAAGCCGTAA+AGG	+	chr2.4:4739935-4739954	None:intergenic	30.0%
CAAATTCAAACAAGTATAGC+TGG	+	chr2.4:4740486-4740505	None:intergenic	30.0%
CAGTGCAAATACTAATCAAA+TGG	+	chr2.4:4739325-4739344	None:intergenic	30.0%
CCATTTAGAGGAACAAATTA+AGG	+	chr2.4:4739875-4739894	None:intergenic	30.0%
GTGCAAATACTAATCAAATG+GGG	+	chr2.4:4739323-4739342	None:intergenic	30.0%
TACTACTGCAGTTTCTTAAT+AGG	+	chr2.4:4738739-4738758	None:intergenic	30.0%
TATATCTATGTTCTAGTGGA+TGG	-	chr2.4:4739520-4739539	MS.gene85247:CDS	30.0%
TATATCTGCTTACAAGTGAT+TGG	+	chr2.4:4739500-4739519	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	4738416	4740733	4738416	ID=MS.gene85247
chr2.4	mRNA	4738416	4740733	4738416	ID=MS.gene85247.t1;Parent=MS.gene85247
chr2.4	exon	4740502	4740733	4740502	ID=MS.gene85247.t1.exon1;Parent=MS.gene85247.t1
chr2.4	CDS	4740502	4740733	4740502	ID=cds.MS.gene85247.t1;Parent=MS.gene85247.t1
chr2.4	exon	4739643	4739791	4739643	ID=MS.gene85247.t1.exon2;Parent=MS.gene85247.t1
chr2.4	CDS	4739643	4739791	4739643	ID=cds.MS.gene85247.t1;Parent=MS.gene85247.t1
chr2.4	exon	4739483	4739557	4739483	ID=MS.gene85247.t1.exon3;Parent=MS.gene85247.t1
chr2.4	CDS	4739483	4739557	4739483	ID=cds.MS.gene85247.t1;Parent=MS.gene85247.t1
chr2.4	exon	4738882	4739082	4738882	ID=MS.gene85247.t1.exon4;Parent=MS.gene85247.t1
chr2.4	CDS	4738882	4739082	4738882	ID=cds.MS.gene85247.t1;Parent=MS.gene85247.t1
chr2.4	exon	4738416	4738796	4738416	ID=MS.gene85247.t1.exon5;Parent=MS.gene85247.t1
chr2.4	CDS	4738416	4738796	4738416	ID=cds.MS.gene85247.t1;Parent=MS.gene85247.t1

Gene Sequence

>MS.gene85247

ATGAAGTGCTTATGTGAGAAAGACTCTGCTCATTCAACACCCCACCATGTTTTCGGATGTCCATCATGGGGAAGATCTTCTGAATCTGAAGTCCAACAAACATCCATGTCCAAAAGTTTGAGCTTCAAAGTGGAAGCTCTACCACAAGAATGCCACAACAGTAAAGCACTGAGTTTTCAATTTCAAGAACAGGATTCATCTTCAACTCAATCGACTGGCTCATCACAATCAGGTATTTGAATTGAAACACTCTATTTGTGTGATTCCGTGCTTGTCAACTGGTGTTTTCTCATTTTGTTATGTTATTGGTGTATATATCTCCTATTAAGAAACTGCAGTAGTACTTTGTATCTATGTAGCACCGACACTTCAAATTAAAGGTGTCTTGAGACACGTGTTAGTGTCCGAAGGACACCGACTCACATAGTTACATTCGATTACTTCTATTTCTTAAATTATTACTGGTGCCAATGTCCGTTGTCTGTGTATGGATGTCTGTTCTTCATAGCTTTTTCTGGTGATTGAAACAAAATGAAGTGATAGAAGTATATGATTATGATTATGTAAACCTACCTCCTTGGTTAGCACTGGCTATATATTGGTAAAAGCTATGGTCATCCATATAATTTAAGTTTTTCTTATAAAATTGGAATTTGTCTTGGATGGCTCAATCAAAATAACAAAATACCTTGACACGTTACTTCATAACTCATATTGAGAATTCAGCTCCTCATAAGCGAGTCAATTTATAGAATAATAAAGCAAGATATCTCATCGTTGATGGGAAAATAAATGGTTGGTATTCTAACACATCCATTATCTGCTGTGTATGTGTATGTGTATGTAATAACAACAAATTTTAACATTTGAGATTGCTGAATTACTTAATTTAGTGGAGCCACGCCCCCATTTGATTAGTATTTGCACTGTGTTGGATACTAGGTCAAATTCCTTTCCAGCATTGTTCTTCTACTGGTTCAACATTTAAGAGAACCGAGGAGAACAATATGGGATGTCTCATCGGATCATCATCTATTGGGAGTCCAAATCTCACCGTCCATCCTCCACTAATGGATCACAGCCAATCACTTGTAAGCAGATATATATATCTATGTTCTAGTGGATGGAAGTATGGAACATATATGCAGACACTTTTCTCAAAATTTTGGGTTTCAGGCGCATGTTGCACTCCACTATGCTGATCCAGGCTACAATGGCCTACTTTCTGCTTCATATGGCCAACAATATAAGGTAATTTGTATTCAAGATTTTTTATCTCTTTTAATTACGGTTTATTGTGTTACCGTATTCCACTCCAGCATGTTGATATTGATATTAATATTGTATGCAGTTTCCTTTTAAAATTTAATGAATTATGATTATGATCAAATCCTTCAAAAAAAACTTGTAAATAGATGTTAGGAGTAGATGTTGCAGCTGGTACATCTTGTTTATACCTTAATTTGTTCCTCTAAATGGACTGTTCAATCATCCGTGCTCTCTGTCGATGTCTAGTCCTTTACGGCTTTCATAAATCATGATTACATCAAGACTGTTCAGCTTCAATTATTTTGATTTCTTATGAGGTGTATTAGTTCTCTAACTCGAACCATAGTTATGACTGAAAATTGACACTTGTTGCTAGTTACAGGCTTATAGCATCATGTCATCAAATTCTGACCAGCTTCTTCAGGGCCAGCTAATGGAAACTGCTTCTGTTCGAATTCCCTTGCCATCTGATATGGCGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTATGAGACGAAGACAGTGTCGGGCAAAACTTGAAGCACATAACAAACTCATAAAGGATCGTAAAGTAAGCACACATGCATTTCTGTTTTGTCTCTTCTATAGCATAAAATTTCTCTTAAACCAACCGCACTAACAATATTGTTGTGCAGCCATATCTTCACGAGTCCCGACATGTACATGCATTAAAGAGAGCTAGAGGTGCCGGTGGCCGTTTTCTCAATGCTAAAAAGCTCCAAGAATCAAAGCTTGATTCGCCAAACCATGACCAAAATGTTTCCACCAGCTATACTTGTTTGAATTTGAATGGAAATATGTCGGAATCCAAAATGCATGATCAGGTTGAAAACTACAGAGATGATGCTTCTGATGTCACATACGGATCTCATAGGAATGAAATGTTTCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAGACTGGAAGGAACATGCATGATTACAAAGCTGACAAGAATGTTGGTGCGAATCAACGCCGACTATCCGTCCGCATGTGA

Protein sequence

>MS.gene85247.t1

MKCLCEKDSAHSTPHHVFGCPSWGRSSESEVQQTSMSKSLSFKVEALPQECHNSKALSFQFQEQDSSSTQSTGSSQSGQIPFQHCSSTGSTFKRTEENNMGCLIGSSSIGSPNLTVHPPLMDHSQSLAHVALHYADPGYNGLLSASYGQQYKAYSIMSSNSDQLLQGQLMETASVRIPLPSDMAEEPIYVNSKQYHAIMRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLQESKLDSPNHDQNVSTSYTCLNLNGNMSESKMHDQVENYRDDASDVTYGSHRNEMFQQQQELEFRLCSYPSSQTGRNMHDYKADKNVGANQRRLSVRM