Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85271.t1 | XP_003597529.1 | 97.9 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 3.00E-199 | 704.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85271.t1 | Q04088 | 65.8 | 360 | 96 | 9 | 1 | 358 | 1 | 335 | 3.1e-104 | 380.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85271.t1 | G7IHV8 | 97.9 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 2.2e-199 | 704.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85271.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85271.t1 | MTR_2g099050 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| MS.gene85271.t1 | MTR_3g467120 | 45.402 | 348 | 141 | 10 | 72 | 406 | 38 | 349 | 4.17e-66 | 216 |
| MS.gene85271.t1 | MTR_5g075390 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 1.15e-64 | 212 |
| MS.gene85271.t1 | MTR_3g094020 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 7.81e-51 | 174 |
| MS.gene85271.t1 | MTR_4g072090 | 44.318 | 264 | 88 | 8 | 109 | 323 | 213 | 466 | 4.34e-49 | 174 |
| MS.gene85271.t1 | MTR_6g034945 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 1.12e-47 | 166 |
| MS.gene85271.t1 | MTR_4g072090 | 44.118 | 238 | 78 | 7 | 109 | 301 | 213 | 440 | 8.27e-42 | 154 |
| MS.gene85271.t1 | MTR_1g023690 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.82e-32 | 129 |
| MS.gene85271.t1 | MTR_2g090900 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.52e-19 | 89.4 |
| MS.gene85271.t1 | MTR_2g090900 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.93e-19 | 89.4 |
| MS.gene85271.t1 | MTR_4g079500 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 1.08e-18 | 87.0 |
| MS.gene85271.t1 | MTR_1g099030 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 3.48e-13 | 70.1 |
| MS.gene85271.t1 | MTR_8g088650 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 3.48e-12 | 68.2 |
| MS.gene85271.t1 | MTR_0405s0060 | 56.140 | 57 | 25 | 0 | 196 | 252 | 99 | 155 | 6.29e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85271.t1 | AT1G06070 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 3.50e-168 | 479 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 6.59e-152 | 436 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G31370 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 1.98e-151 | 435 |
| MS.gene85271.t1 | AT2G40620 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.09e-61 | 203 |
| MS.gene85271.t1 | AT1G43700 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.09e-49 | 171 |
| MS.gene85271.t1 | AT1G06850 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 4.09e-48 | 167 |
| MS.gene85271.t1 | AT4G38900 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.19e-45 | 166 |
| MS.gene85271.t1 | AT4G38900 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.19e-45 | 166 |
| MS.gene85271.t1 | AT4G38900 | 41.328 | 271 | 99 | 7 | 109 | 319 | 228 | 498 | 3.47e-43 | 159 |
| MS.gene85271.t1 | AT2G21230 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.28e-42 | 157 |
| MS.gene85271.t1 | AT2G21230 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.28e-42 | 157 |
| MS.gene85271.t1 | AT2G21230 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.36e-39 | 149 |
| MS.gene85271.t1 | AT2G21230 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.65e-37 | 140 |
| MS.gene85271.t1 | AT1G06850 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.22e-27 | 107 |
| MS.gene85271.t1 | AT2G42380 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.71e-20 | 90.5 |
| MS.gene85271.t1 | AT3G58120 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 1.00e-19 | 90.1 |
| MS.gene85271.t1 | AT2G12900 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.36e-18 | 85.5 |
| MS.gene85271.t1 | AT2G42380 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.46e-17 | 81.6 |
| MS.gene85271.t1 | AT3G58120 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.61e-16 | 78.6 |
| MS.gene85271.t1 | AT2G13150 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.14e-16 | 77.8 |
| MS.gene85271.t1 | AT2G12940 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 3.00e-15 | 76.3 |
| MS.gene85271.t1 | AT2G42380 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.28e-13 | 71.6 |
| MS.gene85271.t1 | AT2G21235 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.32e-13 | 72.0 |
| MS.gene85271.t1 | AT1G58110 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.20e-11 | 66.2 |
| MS.gene85271.t1 | AT1G58110 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.20e-11 | 66.2 |
| MS.gene85271.t1 | AT2G42380 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.63e-11 | 62.4 |
| MS.gene85271.t1 | AT2G42380 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.63e-11 | 62.4 |
Find 118 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTGCTGGTGTCTGATTC+TGG | 0.087788 | 2.4:-5050527 | None:intergenic |
| CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 2.4:+5052938 | MS.gene85271:CDS |
| GCTGTTTCTGAGGATGAATT+TGG | 0.240472 | 2.4:-5053036 | None:intergenic |
| AATGGAAAAGGACAAATCTT+TGG | 0.246887 | 2.4:+5050012 | None:intergenic |
| ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 2.4:-5053206 | None:intergenic |
| CCATGCCATGCACACTCTTT+TGG | 0.268695 | 2.4:+5052991 | MS.gene85271:CDS |
| GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 2.4:-5052981 | None:intergenic |
| TCAGGAGGAGGTACCTCTTC+TGG | 0.279881 | 2.4:+5050469 | MS.gene85271:CDS |
| CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 2.4:-5050148 | None:intergenic |
| TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 2.4:+5050240 | MS.gene85271:CDS |
| ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 2.4:+5050054 | MS.gene85271:CDS |
| TACCTCTTCTGGGGAAAATA+TGG | 0.331870 | 2.4:+5050480 | MS.gene85271:CDS |
| TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 2.4:-5053205 | None:intergenic |
| CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 2.4:-5050526 | None:intergenic |
| ACAAATGCAGCAGCAGCAGC+AGG | 0.359774 | 2.4:+5053126 | MS.gene85271:CDS |
| TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 2.4:-5053093 | None:intergenic |
| TGCACAGTTAACTCTCTTAC+AGG | 0.371836 | 2.4:+5052218 | MS.gene85271:CDS |
| CAGGAGGAGGTACCTCTTCT+GGG | 0.381898 | 2.4:+5050470 | MS.gene85271:CDS |
| GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 2.4:+5050345 | MS.gene85271:CDS |
| CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 2.4:-5053245 | None:intergenic |
| TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 2.4:+5050130 | MS.gene85271:CDS |
| GTCTAATGCTGCCGGAGCAT+CGG | 0.391354 | 2.4:+5050417 | MS.gene85271:CDS |
| ATGGAAAAGGACAAATCTTT+GGG | 0.392509 | 2.4:+5050013 | MS.gene85271:CDS |
| TGCTGCCGGAGCATCGGGTT+TGG | 0.393129 | 2.4:+5050423 | MS.gene85271:CDS |
| CATCCATGGACTGGCTGTGC+TGG | 0.409055 | 2.4:-5050540 | None:intergenic |
| AAGGACAAATCTTTGGGTCT+TGG | 0.416966 | 2.4:+5050019 | MS.gene85271:CDS |
| GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 2.4:+5052423 | MS.gene85271:CDS |
| TCTAATGCTGCCGGAGCATC+GGG | 0.422071 | 2.4:+5050418 | MS.gene85271:CDS |
| TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 2.4:+5050671 | MS.gene85271:CDS |
| CAAGGCAAGTTCTGCAAGCT+TGG | 0.432209 | 2.4:-5050647 | None:intergenic |
| TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 2.4:-5050665 | None:intergenic |
| TAAGGAATCTTCAATGGAAA+AGG | 0.443828 | 2.4:+5050000 | None:intergenic |
| TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 2.4:+5052862 | MS.gene85271:CDS |
| TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 2.4:+5050070 | MS.gene85271:CDS |
| GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 2.4:+5052100 | MS.gene85271:intron |
| CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 2.4:-5052419 | None:intergenic |
| TGCATGGCATGGTTATTATT+GGG | 0.461227 | 2.4:-5052980 | None:intergenic |
| ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 2.4:+5052092 | MS.gene85271:intron |
| AAATCTTTGGGTCTTGGCGG+TGG | 0.466838 | 2.4:+5050025 | MS.gene85271:CDS |
| TGGCGCCAAACCCGATGCTC+CGG | 0.468192 | 2.4:-5050428 | None:intergenic |
| GACAAATCTTTGGGTCTTGG+CGG | 0.471518 | 2.4:+5050022 | MS.gene85271:CDS |
| CAAACCTGAGATGTTAATCT+CGG | 0.472947 | 2.4:+5050576 | MS.gene85271:CDS |
| TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 2.4:+5053219 | MS.gene85271:CDS |
| AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 2.4:-5052926 | None:intergenic |
| CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 2.4:-5052938 | None:intergenic |
| CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 2.4:-5050211 | None:intergenic |
| GCGGCGGATACGACGATGAT+GGG | 0.489367 | 2.4:-5050120 | None:intergenic |
| GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 2.4:+5050076 | MS.gene85271:CDS |
| GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 2.4:+5052911 | MS.gene85271:CDS |
| GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 2.4:+5050289 | MS.gene85271:CDS |
| GAAGGATTTACATCTGATGA+AGG | 0.504672 | 2.4:-5053217 | None:intergenic |
| CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 2.4:+5052891 | MS.gene85271:CDS |
| GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 2.4:+5050277 | MS.gene85271:CDS |
| AGCGGCGGATACGACGATGA+TGG | 0.508995 | 2.4:-5050121 | None:intergenic |
| TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 2.4:-5052923 | None:intergenic |
| CAGCACAGCCAGTCCATGGA+TGG | 0.510016 | 2.4:+5050541 | MS.gene85271:CDS |
| CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 2.4:-5053235 | None:intergenic |
| CTATCAAAGCTAATATCATC+CGG | 0.517208 | 2.4:-5050259 | None:intergenic |
| GATTGTTGTTGACCCATCCA+TGG | 0.518412 | 2.4:-5050554 | None:intergenic |
| CTTATCCATATCAAGGTACA+TGG | 0.520173 | 2.4:-5050350 | None:intergenic |
| ATGTCGGTAGGGCAGACATC+AGG | 0.524354 | 2.4:+5050451 | MS.gene85271:CDS |
| GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 2.4:+5052157 | MS.gene85271:CDS |
| CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 2.4:+5050055 | MS.gene85271:CDS |
| ATCGGGTTTGGCGCCAATGT+CGG | 0.530842 | 2.4:+5050435 | MS.gene85271:CDS |
| GGTTTGGCGCCAATGTCGGT+AGG | 0.535811 | 2.4:+5050439 | MS.gene85271:CDS |
| GATGTCTGCCCTACCGACAT+TGG | 0.538923 | 2.4:-5050448 | None:intergenic |
| ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 2.4:-5050242 | None:intergenic |
| CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 2.4:+5052127 | MS.gene85271:CDS |
| CATGGACAACAAATCTTCCT+CGG | 0.543636 | 2.4:-5050332 | None:intergenic |
| GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 2.4:-5053199 | None:intergenic |
| AATTGAACTTATCCATATCA+AGG | 0.549561 | 2.4:-5050357 | None:intergenic |
| TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 2.4:+5053228 | MS.gene85271:CDS |
| GAACCCGAGATTAACATCTC+AGG | 0.557523 | 2.4:-5050580 | None:intergenic |
| ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 2.4:+5052890 | MS.gene85271:CDS |
| ACACCAGCACAGCCAGTCCA+TGG | 0.559692 | 2.4:+5050537 | MS.gene85271:CDS |
| GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 2.4:+5050409 | MS.gene85271:CDS |
| TTGTTGACCCATCCATGGAC+TGG | 0.565600 | 2.4:-5050549 | None:intergenic |
| GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 2.4:+5052179 | MS.gene85271:CDS |
| AAACCTGAGATGTTAATCTC+GGG | 0.567313 | 2.4:+5050577 | MS.gene85271:CDS |
| GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 2.4:+5050202 | MS.gene85271:CDS |
| TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 2.4:-5053046 | None:intergenic |
| CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 2.4:+5052914 | MS.gene85271:CDS |
| CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 2.4:-5053204 | None:intergenic |
| CGGCGGATACGACGATGATG+GGG | 0.587072 | 2.4:-5050119 | None:intergenic |
| AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 2.4:-5050155 | None:intergenic |
| CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 2.4:-5052991 | None:intergenic |
| CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 2.4:-5050073 | None:intergenic |
| GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 2.4:-5050052 | None:intergenic |
| ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 2.4:+5050268 | MS.gene85271:CDS |
| ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 2.4:-5050085 | None:intergenic |
| TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 2.4:-5052996 | None:intergenic |
| AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 2.4:+5050280 | MS.gene85271:CDS |
| GTTTGGCGCCAATGTCGGTA+GGG | 0.616468 | 2.4:+5050440 | MS.gene85271:CDS |
| AGCACAGCCAGTCCATGGAT+GGG | 0.619422 | 2.4:+5050542 | MS.gene85271:CDS |
| GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 2.4:-5050139 | None:intergenic |
| GAAGCTGCGGTTGCAAACCA+TGG | 0.620439 | 2.4:+5052402 | MS.gene85271:CDS |
| CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 2.4:+5052427 | MS.gene85271:CDS |
| TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 2.4:-5050058 | None:intergenic |
| CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 2.4:-5050136 | None:intergenic |
| AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 2.4:-5050254 | None:intergenic |
| CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 2.4:+5052115 | MS.gene85271:CDS |
| TCTGGGGAAAATATGGCAGT+CGG | 0.630934 | 2.4:+5050487 | MS.gene85271:CDS |
| CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 2.4:-5050055 | None:intergenic |
| TCGGTAGGGCAGACATCAGG+AGG | 0.636796 | 2.4:+5050454 | MS.gene85271:CDS |
| CAGTCGGTACTACAAATGAA+AGG | 0.639281 | 2.4:+5050503 | MS.gene85271:CDS |
| GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 2.4:+5050151 | MS.gene85271:CDS |
| GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 2.4:-5053196 | None:intergenic |
| AGGAGGAGGTACCTCTTCTG+GGG | 0.666286 | 2.4:+5050471 | MS.gene85271:CDS |
| ATGAACAGAGAGATACAAGT+GGG | 0.666459 | 2.4:+5052356 | MS.gene85271:intron |
| GTAGGGCAGACATCAGGAGG+AGG | 0.666831 | 2.4:+5050457 | MS.gene85271:CDS |
| CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 2.4:-5050208 | None:intergenic |
| ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 2.4:+5052110 | MS.gene85271:CDS |
| AGAACAGTGAGCTGAAGCTG+CGG | 0.689015 | 2.4:+5052389 | MS.gene85271:CDS |
| GTCGTTCTCTGATGATACCG+AGG | 0.690738 | 2.4:+5050315 | MS.gene85271:CDS |
| TATGAACAGAGAGATACAAG+TGG | 0.694542 | 2.4:+5052355 | MS.gene85271:intron |
| GGCGGATACGACGATGATGG+GGG | 0.706397 | 2.4:-5050118 | None:intergenic |
| TCGGTATCATCAGAGAACGA+CGG | 0.752661 | 2.4:-5050313 | None:intergenic |
| CAGCACCACCAACTACACCG+AGG | 0.826194 | 2.4:-5050285 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACTAAGAAACATTA+TGG | - | chr2.4:5050725-5050744 | None:intergenic | 15.0% |
| !! | ACAGAATAATATATAACATT+TGG | - | chr2.4:5050797-5050816 | None:intergenic | 15.0% |
| !! | AGACAAATATATTAATCTAT+TGG | - | chr2.4:5052624-5052643 | None:intergenic | 15.0% |
| !! | GACAAATATATTAATCTATT+GGG | - | chr2.4:5052623-5052642 | None:intergenic | 15.0% |
| !! | TAGATTAATATATTTGTCTT+AGG | + | chr2.4:5052625-5052644 | MS.gene85271:intron | 15.0% |
| !!! | AAAATTGTAAGATTTTTCTA+AGG | + | chr2.4:5051424-5051443 | MS.gene85271:intron | 15.0% |
| !!! | AGGACTATATTAATATTTTT+TGG | + | chr2.4:5052327-5052346 | MS.gene85271:intron | 15.0% |
| !!! | CAAATTTTAGAAAATGTATT+GGG | + | chr2.4:5051108-5051127 | MS.gene85271:intron | 15.0% |
| !!! | TATTGTATACTTTATTTTTG+TGG | + | chr2.4:5051348-5051367 | MS.gene85271:intron | 15.0% |
| !!! | TATTTTCTAAAACTGTTTTT+GGG | + | chr2.4:5051771-5051790 | MS.gene85271:intron | 15.0% |
| !!! | TCAAATTTTAGAAAATGTAT+TGG | + | chr2.4:5051107-5051126 | MS.gene85271:intron | 15.0% |
| !!! | TTATTTTCTAAAACTGTTTT+TGG | + | chr2.4:5051770-5051789 | MS.gene85271:intron | 15.0% |
| !! | AAACATGTTTATAAGCTATA+TGG | - | chr2.4:5051059-5051078 | None:intergenic | 20.0% |
| !! | AGTATTTATTTAGTGCAATA+TGG | + | chr2.4:5052541-5052560 | MS.gene85271:intron | 20.0% |
| !! | TAATCTAGCATTCATAAATT+AGG | + | chr2.4:5050830-5050849 | MS.gene85271:intron | 20.0% |
| !! | TGAAATTAATAAACACAACA+AGG | + | chr2.4:5051249-5051268 | MS.gene85271:intron | 20.0% |
| !! | TTCCAAAAAATCTCATTATT+GGG | + | chr2.4:5051805-5051824 | MS.gene85271:intron | 20.0% |
| !! | TTGTGTTTATTAATTTCAAC+AGG | - | chr2.4:5051247-5051266 | None:intergenic | 20.0% |
| !!! | ACAAAAATATAGTGTTATTG+TGG | - | chr2.4:5051291-5051310 | None:intergenic | 20.0% |
| !!! | ACAATAACACTATATTTTTG+TGG | + | chr2.4:5051290-5051309 | MS.gene85271:intron | 20.0% |
| !!! | ATACAAAATATTGTAGGTTT+TGG | + | chr2.4:5051372-5051391 | MS.gene85271:intron | 20.0% |
| ! | AATATATTTGTCTTAGGTGA+AGG | + | chr2.4:5052631-5052650 | MS.gene85271:intron | 25.0% |
| ! | AATTGAACTTATCCATATCA+AGG | - | chr2.4:5050360-5050379 | None:intergenic | 25.0% |
| ! | AGGAAACATTTATAATGTTG+TGG | - | chr2.4:5052458-5052477 | None:intergenic | 25.0% |
| ! | ATACCATATTGTAAATTGCA+AGG | - | chr2.4:5052581-5052600 | None:intergenic | 25.0% |
| ! | ATGAGAAAAAATCTCAGAAA+TGG | + | chr2.4:5051173-5051192 | MS.gene85271:intron | 25.0% |
| ! | CCAAAAGAATTAAAGTTCAT+AGG | - | chr2.4:5052941-5052960 | None:intergenic | 25.0% |
| ! | CTTCCAAAAAATCTCATTAT+TGG | + | chr2.4:5051804-5051823 | MS.gene85271:intron | 25.0% |
| ! | GTTTATTAATTTCAACAGGA+AGG | - | chr2.4:5051243-5051262 | None:intergenic | 25.0% |
| ! | TATCCTTGCAATTTACAATA+TGG | + | chr2.4:5052575-5052594 | MS.gene85271:intron | 25.0% |
| ! | TGCAATAGATAAAGCAAAAT+AGG | - | chr2.4:5051971-5051990 | None:intergenic | 25.0% |
| ! | TTCAAATACTACCAAAACAA+TGG | - | chr2.4:5051744-5051763 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCACTATCATTT+CGG | + | chr2.4:5051004-5051023 | MS.gene85271:intron | 25.0% |
| !! | ATGAACTTTAATTCTTTTGG+AGG | + | chr2.4:5052941-5052960 | MS.gene85271:CDS | 25.0% |
| !! | CCTATGAACTTTAATTCTTT+TGG | + | chr2.4:5052938-5052957 | MS.gene85271:CDS | 25.0% |
| !! | GGTACTTTTGTATTATACAT+AGG | - | chr2.4:5051222-5051241 | None:intergenic | 25.0% |
| !! | TTTTCTTTCTATCTCTTTTG+TGG | + | chr2.4:5052027-5052046 | MS.gene85271:intron | 25.0% |
| AACTACAATAGACCCATAAT+GGG | + | chr2.4:5051587-5051606 | MS.gene85271:intron | 30.0% | |
| AATATATGGCATTATCTCCT+GGG | + | chr2.4:5051945-5051964 | MS.gene85271:intron | 30.0% | |
| AATTGCAAGGATATTACACA+CGG | - | chr2.4:5052568-5052587 | None:intergenic | 30.0% | |
| ACTGAAAGAAAATGTTGGAA+TGG | + | chr2.4:5051485-5051504 | MS.gene85271:intron | 30.0% | |
| AGTTAATCTTACCTAGCATT+TGG | - | chr2.4:5051571-5051590 | None:intergenic | 30.0% | |
| ATACTTTGCAATTGATAAGG+AGG | + | chr2.4:5051396-5051415 | MS.gene85271:intron | 30.0% | |
| ATCTGATGAAGGATTATCTT+TGG | - | chr2.4:5053209-5053228 | None:intergenic | 30.0% | |
| ATGGAAAAGGACAAATCTTT+GGG | + | chr2.4:5050013-5050032 | MS.gene85271:CDS | 30.0% | |
| ATTTGTGTGTAACAGGATAT+GGG | + | chr2.4:5052092-5052111 | MS.gene85271:intron | 30.0% | |
| CATGTTTAGCAAAACTATTG+AGG | + | chr2.4:5051072-5051091 | MS.gene85271:intron | 30.0% | |
| CTATCAAAGCTAATATCATC+CGG | - | chr2.4:5050262-5050281 | None:intergenic | 30.0% | |
| CTGGTTTAAAAGCTAATAGT+AGG | + | chr2.4:5052307-5052326 | MS.gene85271:intron | 30.0% | |
| GGTATACTTTGCAATTGATA+AGG | + | chr2.4:5051393-5051412 | MS.gene85271:intron | 30.0% | |
| TAACTACAATAGACCCATAA+TGG | + | chr2.4:5051586-5051605 | MS.gene85271:intron | 30.0% | |
| TACTTCCATGATAACATCTA+GGG | - | chr2.4:5051623-5051642 | None:intergenic | 30.0% | |
| TATAAGCTTGAGAATATCCA+AGG | + | chr2.4:5052767-5052786 | MS.gene85271:intron | 30.0% | |
| TATTTGTGTGTAACAGGATA+TGG | + | chr2.4:5052091-5052110 | MS.gene85271:intron | 30.0% | |
| TCTGATGAAGGATTATCTTT+GGG | - | chr2.4:5053208-5053227 | None:intergenic | 30.0% | |
| TGCTTATATTTGTGTGTAAC+AGG | + | chr2.4:5052085-5052104 | MS.gene85271:intron | 30.0% | |
| TGTGGCATACAAAATATTGT+AGG | + | chr2.4:5051334-5051353 | MS.gene85271:intron | 30.0% | |
| TTCATCAGATGTAAATCCTT+CGG | + | chr2.4:5053219-5053238 | MS.gene85271:CDS | 30.0% | |
| TTCTCTTTCACTATCATTTC+GGG | + | chr2.4:5051005-5051024 | MS.gene85271:intron | 30.0% | |
| TTTAAATGACGCGTTAAAAG+AGG | + | chr2.4:5052862-5052881 | MS.gene85271:CDS | 30.0% | |
| TTTGCTTTATCTATTGCACT+TGG | + | chr2.4:5051973-5051992 | MS.gene85271:intron | 30.0% | |
| ! | AGCAACGTCTAATTTTCAAA+TGG | + | chr2.4:5050387-5050406 | MS.gene85271:CDS | 30.0% |
| ! | GCAAAATATTGTAGGTTTTG+TGG | + | chr2.4:5051316-5051335 | MS.gene85271:intron | 30.0% |
| ! | GCAACGTCTAATTTTCAAAT+GGG | + | chr2.4:5050388-5050407 | MS.gene85271:CDS | 30.0% |
| ! | TAGTTGTTGTTGTTGTTCTA+AGG | + | chr2.4:5051459-5051478 | MS.gene85271:intron | 30.0% |
| ! | TCTAATTTTCAAATGGGTGA+GGG | + | chr2.4:5050394-5050413 | MS.gene85271:CDS | 30.0% |
| ! | TGTTATTGTGGTTCATGTTT+TGG | - | chr2.4:5051279-5051298 | None:intergenic | 30.0% |
| ! | TTCGGGATAATTTTATTCAC+TGG | + | chr2.4:5051022-5051041 | MS.gene85271:intron | 30.0% |
| ! | TTCTATCTCTTTTGTGGTTT+GGG | + | chr2.4:5052033-5052052 | MS.gene85271:intron | 30.0% |
| ! | TTTCTATCTCTTTTGTGGTT+TGG | + | chr2.4:5052032-5052051 | MS.gene85271:intron | 30.0% |
| !! | AACTTTAATTCTTTTGGAGG+AGG | + | chr2.4:5052944-5052963 | MS.gene85271:CDS | 30.0% |
| !! | ACTTTAATTCTTTTGGAGGA+GGG | + | chr2.4:5052945-5052964 | MS.gene85271:CDS | 30.0% |
| !!! | GTTGCGTTTTATTTACTTGA+AGG | + | chr2.4:5051658-5051677 | MS.gene85271:intron | 30.0% |
| !!! | TGACATTGCTTTTTTGGAAT+CGG | - | chr2.4:5050623-5050642 | None:intergenic | 30.0% |
| AAACCTGAGATGTTAATCTC+GGG | + | chr2.4:5050577-5050596 | MS.gene85271:CDS | 35.0% | |
| AATGACAAAACAGAGCTTTG+AGG | - | chr2.4:5050978-5050997 | None:intergenic | 35.0% | |
| AATGCCATATATTGATGAGC+TGG | - | chr2.4:5051938-5051957 | None:intergenic | 35.0% | |
| AGTTCCAGCTCATCAATATA+TGG | + | chr2.4:5051931-5051950 | MS.gene85271:intron | 35.0% | |
| ATGAACAGAGAGATACAAGT+GGG | + | chr2.4:5052356-5052375 | MS.gene85271:intron | 35.0% | |
| CAAACCTGAGATGTTAATCT+CGG | + | chr2.4:5050576-5050595 | MS.gene85271:CDS | 35.0% | |
| CAAGTAAATAAAACGCAACC+TGG | - | chr2.4:5051657-5051676 | None:intergenic | 35.0% | |
| CAATATATGGCATTATCTCC+TGG | + | chr2.4:5051944-5051963 | MS.gene85271:intron | 35.0% | |
| CTACTTCCATGATAACATCT+AGG | - | chr2.4:5051624-5051643 | None:intergenic | 35.0% | |
| CTGATGAAGGATTATCTTTG+GGG | - | chr2.4:5053207-5053226 | None:intergenic | 35.0% | |
| CTTATCCATATCAAGGTACA+TGG | - | chr2.4:5050353-5050372 | None:intergenic | 35.0% | |
| GAACAACAACAACAACAATC+AGG | + | chr2.4:5053148-5053167 | MS.gene85271:CDS | 35.0% | |
| GAAGGATTTACATCTGATGA+AGG | - | chr2.4:5053220-5053239 | None:intergenic | 35.0% | |
| GGTCTACTGAAAGAAAATGT+TGG | + | chr2.4:5051480-5051499 | MS.gene85271:intron | 35.0% | |
| TATGAACAGAGAGATACAAG+TGG | + | chr2.4:5052355-5052374 | MS.gene85271:intron | 35.0% | |
| TGCATGGCATGGTTATTATT+GGG | - | chr2.4:5052983-5053002 | None:intergenic | 35.0% | |
| TGTGGCATGCAAAATATTGT+AGG | + | chr2.4:5051308-5051327 | MS.gene85271:intron | 35.0% | |
| TTTAGCAAAACTATTGAGGC+AGG | + | chr2.4:5051076-5051095 | MS.gene85271:intron | 35.0% | |
| TTTGTTGCTGCTGTATTTGT+TGG | - | chr2.4:5053096-5053115 | None:intergenic | 35.0% | |
| ! | ATAATACCTTTTTGCACGCT+TGG | - | chr2.4:5050680-5050699 | None:intergenic | 35.0% |
| ! | CATGTTGGTGAAAAAAAAGG+TGG | - | chr2.4:5050946-5050965 | None:intergenic | 35.0% |
| ! | CTAATTTTCAAATGGGTGAG+GGG | + | chr2.4:5050395-5050414 | MS.gene85271:CDS | 35.0% |
| ! | GCAAATGTTTTCCAAATGCT+AGG | + | chr2.4:5051557-5051576 | MS.gene85271:intron | 35.0% |
| ! | GTCTAATTTTCAAATGGGTG+AGG | + | chr2.4:5050393-5050412 | MS.gene85271:CDS | 35.0% |
| ! | TAATACCTTTTTGCACGCTT+GGG | - | chr2.4:5050679-5050698 | None:intergenic | 35.0% |
| ! | TCAAAGCTCTGTTTTGTCAT+TGG | + | chr2.4:5050977-5050996 | MS.gene85271:intron | 35.0% |
| !! | ATTAGCTTTGATAGTGACCT+CGG | + | chr2.4:5050268-5050287 | MS.gene85271:CDS | 35.0% |
| !! | GGTATTGATGAAATACTGCT+CGG | + | chr2.4:5051856-5051875 | MS.gene85271:intron | 35.0% |
| !! | TGGCTGCAAAATTTTGTTGT+TGG | + | chr2.4:5052673-5052692 | MS.gene85271:intron | 35.0% |
| !! | TTTGAGACAGGATAGGATTT+TGG | + | chr2.4:5051133-5051152 | MS.gene85271:intron | 35.0% |
| !!! | GATTTTTCTAAGGTCTACCA+AGG | + | chr2.4:5051434-5051453 | MS.gene85271:intron | 35.0% |
| !!! | GGCCCAATAATGAGATTTTT+TGG | - | chr2.4:5051810-5051829 | None:intergenic | 35.0% |
| !!! | GGCTGCAAAATTTTGTTGTT+GGG | + | chr2.4:5052674-5052693 | MS.gene85271:intron | 35.0% |
| !!! | TCTAAAACTGTTTTTGGGTG+TGG | + | chr2.4:5051776-5051795 | MS.gene85271:intron | 35.0% |
| AAAGCTAATATCATCCGGCA+AGG | - | chr2.4:5050257-5050276 | None:intergenic | 40.0% | |
| AAGCTTGAGAATATCCAAGG+TGG | + | chr2.4:5052770-5052789 | MS.gene85271:intron | 40.0% | |
| AAGGACAAATCTTTGGGTCT+TGG | + | chr2.4:5050019-5050038 | MS.gene85271:CDS | 40.0% | |
| AAGTTCATAGGTCCTCCATT+TGG | - | chr2.4:5052929-5052948 | None:intergenic | 40.0% | |
| ACATTGAAACCACTTCCAGT+TGG | - | chr2.4:5050088-5050107 | None:intergenic | 40.0% | |
| AGATAAAGCAAAATAGGCCC+AGG | - | chr2.4:5051965-5051984 | None:intergenic | 40.0% | |
| AGTCAATAATACAGACCGAG+TGG | - | chr2.4:5050922-5050941 | None:intergenic | 40.0% | |
| ATAGAATGGCCTTCCTTAGA+GGG | + | chr2.4:5051879-5051898 | MS.gene85271:intron | 40.0% | |
| CAAAACTATTGAGGCAGGAT+AGG | + | chr2.4:5051081-5051100 | MS.gene85271:intron | 40.0% | |
| CAACAACAACAACTAAGCCT+TGG | - | chr2.4:5051454-5051473 | None:intergenic | 40.0% | |
| CAGTCGGTACTACAAATGAA+AGG | + | chr2.4:5050503-5050522 | MS.gene85271:CDS | 40.0% | |
| CATGGACAACAAATCTTCCT+CGG | - | chr2.4:5050335-5050354 | None:intergenic | 40.0% | |
| CCAATTACTATTTCGCTTGC+TGG | + | chr2.4:5052288-5052307 | MS.gene85271:intron | 40.0% | |
| CCAGCAAGCGAAATAGTAAT+TGG | - | chr2.4:5052291-5052310 | None:intergenic | 40.0% | |
| CCATGATAACATCTAGGGAA+GGG | - | chr2.4:5051618-5051637 | None:intergenic | 40.0% | |
| GAAATACTGCTCGGATAGAA+TGG | + | chr2.4:5051865-5051884 | MS.gene85271:intron | 40.0% | |
| GATAATCCTCCGAGAAATAG+AGG | + | chr2.4:5050202-5050221 | MS.gene85271:CDS | 40.0% | |
| GCTATATTGCTGAGCTTGAA+AGG | + | chr2.4:5052157-5052176 | MS.gene85271:CDS | 40.0% | |
| GTAACAGGATATGGGCAAAT+AGG | + | chr2.4:5052100-5052119 | MS.gene85271:intron | 40.0% | |
| GTGCATGGCATGGTTATTAT+TGG | - | chr2.4:5052984-5053003 | None:intergenic | 40.0% | |
| GTTGTCCATGTACCTTGATA+TGG | + | chr2.4:5050345-5050364 | MS.gene85271:CDS | 40.0% | |
| TAAGCAGTGTTTGTCGATGT+TGG | - | chr2.4:5052071-5052090 | None:intergenic | 40.0% | |
| TCAAGATAAACTGTCCACCT+TGG | - | chr2.4:5052787-5052806 | None:intergenic | 40.0% | |
| TCCATGATAACATCTAGGGA+AGG | - | chr2.4:5051619-5051638 | None:intergenic | 40.0% | |
| TGCACAGTTAACTCTCTTAC+AGG | + | chr2.4:5052218-5052237 | MS.gene85271:CDS | 40.0% | |
| ! | AATACCTTTTTGCACGCTTG+GGG | - | chr2.4:5050678-5050697 | None:intergenic | 40.0% |
| ! | ACACACTCACACCATTGTTT+TGG | + | chr2.4:5051730-5051749 | MS.gene85271:intron | 40.0% |
| ! | ACGCGTCATTTAAAGCTACA+AGG | - | chr2.4:5052856-5052875 | None:intergenic | 40.0% |
| ! | CGGCATGTTGGTGAAAAAAA+AGG | - | chr2.4:5050949-5050968 | None:intergenic | 40.0% |
| ! | CGTCTATGACCTCTATTTCT+CGG | - | chr2.4:5050214-5050233 | None:intergenic | 40.0% |
| ! | GAAAGTGCAGACATTGCAAA+CGG | + | chr2.4:5052179-5052198 | MS.gene85271:CDS | 40.0% |
| ! | TACCTCTTCTGGGGAAAATA+TGG | + | chr2.4:5050480-5050499 | MS.gene85271:CDS | 40.0% |
| !! | ACAGAGCTTTGAGGAATTCA+CGG | - | chr2.4:5050969-5050988 | None:intergenic | 40.0% |
| !! | ACGCATTTGAAAGTACTGAC+TGG | + | chr2.4:5052890-5052909 | MS.gene85271:CDS | 40.0% |
| !! | ATGTATTGGGTCTTTGAGAC+AGG | + | chr2.4:5051121-5051140 | MS.gene85271:intron | 40.0% |
| !! | CGCATTTGAAAGTACTGACT+GGG | + | chr2.4:5052891-5052910 | MS.gene85271:CDS | 40.0% |
| !! | GCTGTTTCTGAGGATGAATT+TGG | - | chr2.4:5053039-5053058 | None:intergenic | 40.0% |
| AAAGCCACTAGAATCTGAGC+TGG | - | chr2.4:5050158-5050177 | None:intergenic | 45.0% | |
| ATCAATACCTGCTGCAGTGT+GGG | - | chr2.4:5051845-5051864 | None:intergenic | 45.0% | |
| ATCCGGCAAGGTAAGAATCT+CGG | - | chr2.4:5050245-5050264 | None:intergenic | 45.0% | |
| ATCCTGACGTGTATTCCACT+CGG | + | chr2.4:5050904-5050923 | MS.gene85271:intron | 45.0% | |
| CAACAAGTTCACTTGCAGGA+TGG | + | chr2.4:5052427-5052446 | MS.gene85271:CDS | 45.0% | |
| CCCTTCCCTAGATGTTATCA+TGG | + | chr2.4:5051615-5051634 | MS.gene85271:intron | 45.0% | |
| GAACCCGAGATTAACATCTC+AGG | - | chr2.4:5050583-5050602 | None:intergenic | 45.0% | |
| GACAAATCTTTGGGTCTTGG+CGG | + | chr2.4:5050022-5050041 | MS.gene85271:CDS | 45.0% | |
| GATAACATCTAGGGAAGGGT+TGG | - | chr2.4:5051614-5051633 | None:intergenic | 45.0% | |
| GATAGAATGGCCTTCCTTAG+AGG | + | chr2.4:5051878-5051897 | MS.gene85271:intron | 45.0% | |
| GGTTATTCACCAACTGGAAG+TGG | + | chr2.4:5050076-5050095 | MS.gene85271:CDS | 45.0% | |
| GTGCATGTTTAGTGTGAAGC+TGG | + | chr2.4:5052653-5052672 | MS.gene85271:intron | 45.0% | |
| TATCCGGGTTATTCACCAAC+TGG | + | chr2.4:5050070-5050089 | MS.gene85271:CDS | 45.0% | |
| TCGGTATCATCAGAGAACGA+CGG | - | chr2.4:5050316-5050335 | None:intergenic | 45.0% | |
| TCTGGGGAAAATATGGCAGT+CGG | + | chr2.4:5050487-5050506 | MS.gene85271:CDS | 45.0% | |
| TGTATAGACTGTGCCCTCTA+AGG | - | chr2.4:5051895-5051914 | None:intergenic | 45.0% | |
| TTCATAGGTCCTCCATTTGG+CGG | - | chr2.4:5052926-5052945 | None:intergenic | 45.0% | |
| TTCCGAGATTCTTACCTTGC+CGG | + | chr2.4:5050240-5050259 | MS.gene85271:CDS | 45.0% | |
| TTGAGGAATTCACGGCATGT+TGG | - | chr2.4:5050961-5050980 | None:intergenic | 45.0% | |
| ! | CTATGACCTCTATTTCTCGG+AGG | - | chr2.4:5050211-5050230 | None:intergenic | 45.0% |
| ! | GATTGTTGTTGACCCATCCA+TGG | - | chr2.4:5050557-5050576 | None:intergenic | 45.0% |
| ! | TGCCATATTTTCCCCAGAAG+AGG | - | chr2.4:5050485-5050504 | None:intergenic | 45.0% |
| !! | CAAGTGAACTTGTTGCTCCA+TGG | - | chr2.4:5052422-5052441 | None:intergenic | 45.0% |
| !! | CTTCCAGTTGGTGAATAACC+CGG | - | chr2.4:5050076-5050095 | None:intergenic | 45.0% |
| !! | GAAGGATTATCTTTGGGGCA+TGG | - | chr2.4:5053202-5053221 | None:intergenic | 45.0% |
| !! | TGATGTTGCTGCTGTTTCTG+AGG | - | chr2.4:5053049-5053068 | None:intergenic | 45.0% |
| !! | TTGGGTCTTTGAGACAGGAT+AGG | + | chr2.4:5051126-5051145 | MS.gene85271:intron | 45.0% |
| !!! | GGCTGCTGACATTGCTTTTT+TGG | - | chr2.4:5050629-5050648 | None:intergenic | 45.0% |
| AAATCTTTGGGTCTTGGCGG+TGG | + | chr2.4:5050025-5050044 | MS.gene85271:CDS | 50.0% | |
| ACCTCCATCAGGACGTTATC+CGG | + | chr2.4:5050054-5050073 | MS.gene85271:CDS | 50.0% | |
| AGAACAGTGAGCTGAAGCTG+CGG | + | chr2.4:5052389-5052408 | MS.gene85271:CDS | 50.0% | |
| ATGGGCAAATAGGCAGTCTG+CGG | + | chr2.4:5052110-5052129 | MS.gene85271:CDS | 50.0% | |
| CAAGGCAAGTTCTGCAAGCT+TGG | - | chr2.4:5050650-5050669 | None:intergenic | 50.0% | |
| CAGTGTGGGAAGGGATCAAA+AGG | - | chr2.4:5051831-5051850 | None:intergenic | 50.0% | |
| CATCAATACCTGCTGCAGTG+TGG | - | chr2.4:5051846-5051865 | None:intergenic | 50.0% | |
| CTGCGGCAAGGTCAAAAGAA+AGG | + | chr2.4:5052127-5052146 | MS.gene85271:CDS | 50.0% | |
| GGAACCAGCTCAGATTCTAG+TGG | + | chr2.4:5050151-5050170 | MS.gene85271:CDS | 50.0% | |
| GGAAGGGTTGGACCCATTAT+GGG | - | chr2.4:5051602-5051621 | None:intergenic | 50.0% | |
| GGAGCAACAAGTTCACTTGC+AGG | + | chr2.4:5052423-5052442 | MS.gene85271:CDS | 50.0% | |
| GTCGTTCTCTGATGATACCG+AGG | + | chr2.4:5050315-5050334 | MS.gene85271:CDS | 50.0% | |
| TAACCCGGATAACGTCCTGA+TGG | - | chr2.4:5050061-5050080 | None:intergenic | 50.0% | |
| TGTAAATCCTTCGGCAGCCA+AGG | + | chr2.4:5053228-5053247 | MS.gene85271:CDS | 50.0% | |
| TTGACCCCAAGCGTGCAAAA+AGG | + | chr2.4:5050671-5050690 | MS.gene85271:CDS | 50.0% | |
| TTGTTGACCCATCCATGGAC+TGG | - | chr2.4:5050552-5050571 | None:intergenic | 50.0% | |
| ! | CCAAAAGAGTGTGCATGGCA+TGG | - | chr2.4:5052994-5053013 | None:intergenic | 50.0% |
| ! | CCATGCCATGCACACTCTTT+TGG | + | chr2.4:5052991-5053010 | MS.gene85271:CDS | 50.0% |
| ! | CTAGAATCTGAGCTGGTTCC+AGG | - | chr2.4:5050151-5050170 | None:intergenic | 50.0% |
| ! | CTGTGCTGGTGTCTGATTCT+GGG | - | chr2.4:5050529-5050548 | None:intergenic | 50.0% |
| ! | GATAGTGACCTCGGTGTAGT+TGG | + | chr2.4:5050277-5050296 | MS.gene85271:CDS | 50.0% |
| ! | GGAAGTAGCTCTATAGCACC+AGG | + | chr2.4:5051636-5051655 | MS.gene85271:intron | 50.0% |
| ! | TAGACTGTGCCCTCTAAGGA+AGG | - | chr2.4:5051891-5051910 | None:intergenic | 50.0% |
| ! | TGCAGCCAAAAGAGTGTGCA+TGG | - | chr2.4:5052999-5053018 | None:intergenic | 50.0% |
| !! | GGATTATCTTTGGGGCATGG+AGG | - | chr2.4:5053199-5053218 | None:intergenic | 50.0% |
| ACAAATGCAGCAGCAGCAGC+AGG | + | chr2.4:5053126-5053145 | MS.gene85271:CDS | 55.0% | |
| AGCACAGCCAGTCCATGGAT+GGG | + | chr2.4:5050542-5050561 | MS.gene85271:CDS | 55.0% | |
| AGCAGCAGAGTAGCAGCTTC+AGG | - | chr2.4:5052478-5052497 | None:intergenic | 55.0% | |
| ATACCTGCTGCAGTGTGGGA+AGG | - | chr2.4:5051841-5051860 | None:intergenic | 55.0% | |
| ATCGGGTTTGGCGCCAATGT+CGG | + | chr2.4:5050435-5050454 | MS.gene85271:CDS | 55.0% | |
| ATGTCGGTAGGGCAGACATC+AGG | + | chr2.4:5050451-5050470 | MS.gene85271:CDS | 55.0% | |
| CAAATAGGCAGTCTGCGGCA+AGG | + | chr2.4:5052115-5052134 | MS.gene85271:CDS | 55.0% | |
| CAACAATCCTTGGCTGCCGA+AGG | - | chr2.4:5053238-5053257 | None:intergenic | 55.0% | |
| CAAGCTATGCCGCCAAATGG+AGG | + | chr2.4:5052914-5052933 | MS.gene85271:CDS | 55.0% | |
| CCTCCATCAGGACGTTATCC+GGG | + | chr2.4:5050055-5050074 | MS.gene85271:CDS | 55.0% | |
| GAAGCTGCGGTTGCAAACCA+TGG | + | chr2.4:5052402-5052421 | MS.gene85271:CDS | 55.0% | |
| GACCGAGTGGAATACACGTC+AGG | - | chr2.4:5050909-5050928 | None:intergenic | 55.0% | |
| GATGTCTGCCCTACCGACAT+TGG | - | chr2.4:5050451-5050470 | None:intergenic | 55.0% | |
| GGATAACGTCCTGATGGAGG+TGG | - | chr2.4:5050055-5050074 | None:intergenic | 55.0% | |
| GGGAAGGGTTGGACCCATTA+TGG | - | chr2.4:5051603-5051622 | None:intergenic | 55.0% | |
| GTCTAATGCTGCCGGAGCAT+CGG | + | chr2.4:5050417-5050436 | MS.gene85271:CDS | 55.0% | |
| GTTTGGCGCCAATGTCGGTA+GGG | + | chr2.4:5050440-5050459 | MS.gene85271:CDS | 55.0% | |
| TACCTGCTGCAGTGTGGGAA+GGG | - | chr2.4:5051840-5051859 | None:intergenic | 55.0% | |
| TGCACGCTTGGGGTCAATCA+AGG | - | chr2.4:5050668-5050687 | None:intergenic | 55.0% | |
| ! | AGTGACCTCGGTGTAGTTGG+TGG | + | chr2.4:5050280-5050299 | MS.gene85271:CDS | 55.0% |
| ! | GCTGTGCTGGTGTCTGATTC+TGG | - | chr2.4:5050530-5050549 | None:intergenic | 55.0% |
| ! | GGTGGTTTTCCACCTCCATC+AGG | + | chr2.4:5050043-5050062 | MS.gene85271:CDS | 55.0% |
| ! | TCTAATGCTGCCGGAGCATC+GGG | + | chr2.4:5050418-5050437 | MS.gene85271:CDS | 55.0% |
| !! | AGGAGGAGGTACCTCTTCTG+GGG | + | chr2.4:5050471-5050490 | MS.gene85271:CDS | 55.0% |
| !! | CAGGAGGAGGTACCTCTTCT+GGG | + | chr2.4:5050470-5050489 | MS.gene85271:CDS | 55.0% |
| !! | GGTGTAGTTGGTGGTGCTGA+TGG | + | chr2.4:5050289-5050308 | MS.gene85271:CDS | 55.0% |
| !! | TCAGGAGGAGGTACCTCTTC+TGG | + | chr2.4:5050469-5050488 | MS.gene85271:CDS | 55.0% |
| ACACCAGCACAGCCAGTCCA+TGG | + | chr2.4:5050537-5050556 | MS.gene85271:CDS | 60.0% | |
| AGCGGCGGATACGACGATGA+TGG | - | chr2.4:5050124-5050143 | None:intergenic | 60.0% | |
| ATCCCTTCCCACACTGCAGC+AGG | + | chr2.4:5051835-5051854 | MS.gene85271:intron | 60.0% | |
| CAGCACAGCCAGTCCATGGA+TGG | + | chr2.4:5050541-5050560 | MS.gene85271:CDS | 60.0% | |
| CAGCACCACCAACTACACCG+AGG | - | chr2.4:5050288-5050307 | None:intergenic | 60.0% | |
| CCCGGATAACGTCCTGATGG+AGG | - | chr2.4:5050058-5050077 | None:intergenic | 60.0% | |
| CGGCGGATACGACGATGATG+GGG | - | chr2.4:5050122-5050141 | None:intergenic | 60.0% | |
| GCGGCGGATACGACGATGAT+GGG | - | chr2.4:5050123-5050142 | None:intergenic | 60.0% | |
| GGGCAAGCTATGCCGCCAAA+TGG | + | chr2.4:5052911-5052930 | MS.gene85271:CDS | 60.0% | |
| GGTGAGGGGTCTAATGCTGC+CGG | + | chr2.4:5050409-5050428 | MS.gene85271:CDS | 60.0% | |
| GGTTTGGCGCCAATGTCGGT+AGG | + | chr2.4:5050439-5050458 | MS.gene85271:CDS | 60.0% | |
| GTAGGGCAGACATCAGGAGG+AGG | + | chr2.4:5050457-5050476 | MS.gene85271:CDS | 60.0% | |
| TCGGTAGGGCAGACATCAGG+AGG | + | chr2.4:5050454-5050473 | MS.gene85271:CDS | 60.0% | |
| ! | GAGCTGGTTCCAGGAGCAAG+CGG | - | chr2.4:5050142-5050161 | None:intergenic | 60.0% |
| ! | GGCGGATACGACGATGATGG+GGG | - | chr2.4:5050121-5050140 | None:intergenic | 60.0% |
| !! | CATCCATGGACTGGCTGTGC+TGG | - | chr2.4:5050543-5050562 | None:intergenic | 60.0% |
| CTGGTTCCAGGAGCAAGCGG+CGG | - | chr2.4:5050139-5050158 | None:intergenic | 65.0% | |
| TCGTATCCGCCGCTTGCTCC+TGG | + | chr2.4:5050130-5050149 | MS.gene85271:CDS | 65.0% | |
| TGGCGCCAAACCCGATGCTC+CGG | - | chr2.4:5050431-5050450 | None:intergenic | 65.0% | |
| !! | TGCTGCCGGAGCATCGGGTT+TGG | + | chr2.4:5050423-5050442 | MS.gene85271:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5050013 | 5053258 | 5050013 | ID=MS.gene85271 |
| chr2.4 | mRNA | 5050013 | 5053258 | 5050013 | ID=MS.gene85271.t1;Parent=MS.gene85271 |
| chr2.4 | exon | 5050013 | 5050692 | 5050013 | ID=MS.gene85271.t1.exon1;Parent=MS.gene85271.t1 |
| chr2.4 | CDS | 5050013 | 5050692 | 5050013 | ID=cds.MS.gene85271.t1;Parent=MS.gene85271.t1 |
| chr2.4 | exon | 5052107 | 5052239 | 5052107 | ID=MS.gene85271.t1.exon2;Parent=MS.gene85271.t1 |
| chr2.4 | CDS | 5052107 | 5052239 | 5052107 | ID=cds.MS.gene85271.t1;Parent=MS.gene85271.t1 |
| chr2.4 | exon | 5052364 | 5052448 | 5052364 | ID=MS.gene85271.t1.exon3;Parent=MS.gene85271.t1 |
| chr2.4 | CDS | 5052364 | 5052448 | 5052364 | ID=cds.MS.gene85271.t1;Parent=MS.gene85271.t1 |
| chr2.4 | exon | 5052861 | 5053258 | 5052861 | ID=MS.gene85271.t1.exon4;Parent=MS.gene85271.t1 |
| chr2.4 | CDS | 5052861 | 5053258 | 5052861 | ID=cds.MS.gene85271.t1;Parent=MS.gene85271.t1 |
| Gene Sequence |
| Protein sequence |
