Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85274.t1 | XP_003597525.1 | 97.5 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 1.30E-135 | 492.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85274.t1 | Q96288 | 57.1 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 4.7e-73 | 275.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85274.t1 | G7IHV4 | 97.5 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 9.5e-136 | 492.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene85274.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85274.t1 | MTR_2g099010 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 0.0 | 497 |
MS.gene85274.t1 | MTR_2g099010 | 97.119 | 243 | 6 | 1 | 1 | 243 | 1 | 242 | 5.55e-179 | 491 |
MS.gene85274.t1 | MTR_2g099010 | 95.722 | 187 | 8 | 0 | 57 | 243 | 31 | 217 | 1.91e-123 | 349 |
MS.gene85274.t1 | MTR_4g067320 | 70.082 | 244 | 68 | 3 | 1 | 243 | 1 | 240 | 2.04e-123 | 350 |
MS.gene85274.t1 | MTR_4g067320 | 69.672 | 244 | 68 | 4 | 1 | 243 | 1 | 239 | 3.70e-121 | 345 |
MS.gene85274.t1 | MTR_2g073370 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 6.74e-42 | 144 |
MS.gene85274.t1 | MTR_1g023260 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 1.10e-36 | 130 |
MS.gene85274.t1 | MTR_1g023260 | 41.040 | 173 | 81 | 2 | 1 | 152 | 1 | 173 | 6.92e-35 | 123 |
MS.gene85274.t1 | MTR_3g113070 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 1.17e-34 | 124 |
MS.gene85274.t1 | MTR_3g117320 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 8.80e-34 | 122 |
MS.gene85274.t1 | MTR_4g071200 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.67e-32 | 118 |
MS.gene85274.t1 | MTR_5g021580 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 3.67e-23 | 93.2 |
MS.gene85274.t1 | MTR_5g021580 | 46.939 | 98 | 49 | 2 | 1 | 98 | 1 | 95 | 3.88e-23 | 93.2 |
MS.gene85274.t1 | MTR_3g105710 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 2.41e-17 | 79.7 |
MS.gene85274.t1 | MTR_7g018170 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 9.56e-17 | 79.0 |
MS.gene85274.t1 | MTR_7g018170 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 4.48e-11 | 62.4 |
MS.gene85274.t1 | MTR_1g013450 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 3.37e-16 | 76.6 |
MS.gene85274.t1 | MTR_4g128930 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 3.80e-15 | 74.3 |
MS.gene85274.t1 | MTR_7g108150 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 4.60e-13 | 68.2 |
MS.gene85274.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 8.12e-12 | 64.7 |
MS.gene85274.t1 | MTR_5g069480 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.05e-11 | 63.9 |
MS.gene85274.t1 | MTR_3g082630 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 6.81e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85274.t1 | AT2G31380 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 2.85e-94 | 276 |
MS.gene85274.t1 | AT1G06040 | 57.087 | 254 | 92 | 7 | 1 | 243 | 1 | 248 | 8.84e-94 | 276 |
MS.gene85274.t1 | AT1G06040 | 62.941 | 170 | 52 | 4 | 1 | 161 | 1 | 168 | 9.18e-68 | 207 |
MS.gene85274.t1 | AT1G78600 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 5.33e-41 | 142 |
MS.gene85274.t1 | AT1G78600 | 58.333 | 108 | 45 | 0 | 1 | 108 | 1 | 108 | 9.66e-41 | 142 |
MS.gene85274.t1 | AT4G10240 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.30e-35 | 124 |
MS.gene85274.t1 | AT1G75540 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 4.75e-34 | 125 |
MS.gene85274.t1 | AT4G39070 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.60e-30 | 113 |
MS.gene85274.t1 | AT2G21320 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 1.73e-23 | 93.6 |
MS.gene85274.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.57e-23 | 92.8 |
MS.gene85274.t1 | AT4G38960 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 4.57e-23 | 92.8 |
MS.gene85274.t1 | AT5G15850 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 2.79e-17 | 80.1 |
MS.gene85274.t1 | AT2G24790 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.03e-17 | 78.2 |
MS.gene85274.t1 | AT2G24790 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.03e-16 | 76.6 |
MS.gene85274.t1 | AT3G02380 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.17e-15 | 75.5 |
MS.gene85274.t1 | AT5G24930 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.44e-15 | 75.5 |
MS.gene85274.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 5.74e-15 | 73.6 |
MS.gene85274.t1 | AT5G15840 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.90e-15 | 72.8 |
MS.gene85274.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.11e-12 | 65.9 |
MS.gene85274.t1 | AT1G28050 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.15e-12 | 65.9 |
MS.gene85274.t1 | AT2G33500 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.24e-12 | 65.9 |
MS.gene85274.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.40e-11 | 61.6 |
MS.gene85274.t1 | AT2G47890 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.99e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTGGCATATGTCACATTT+AGG | 0.154164 | 2.4:-5074979 | None:intergenic |
GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2.4:-5075841 | None:intergenic |
TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2.4:+5075941 | MS.gene85274:CDS |
ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2.4:-5075873 | None:intergenic |
CTTGGCATATGTCACATTTA+GGG | 0.307139 | 2.4:-5074978 | None:intergenic |
TGATTTGCAGAAAGGCTTCC+AGG | 0.309803 | 2.4:-5075768 | None:intergenic |
TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2.4:-5076787 | None:intergenic |
AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2.4:-5076738 | None:intergenic |
CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2.4:+5076610 | MS.gene85274:intron |
TTTGGCGCAGTTAGATTTCA+TGG | 0.374267 | 2.4:-5075823 | None:intergenic |
TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2.4:+5076835 | MS.gene85274:CDS |
TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2.4:-5076718 | None:intergenic |
GCACAACAAATCATTGTTGC+AGG | 0.412099 | 2.4:-5074850 | None:intergenic |
TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2.4:+5076618 | MS.gene85274:CDS |
CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2.4:-5076847 | None:intergenic |
AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2.4:-5076689 | None:intergenic |
AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2.4:-5075909 | None:intergenic |
TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2.4:-5075870 | None:intergenic |
TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2.4:-5076761 | None:intergenic |
CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2.4:+5075859 | MS.gene85274:CDS |
CACCAGCGCTTCCTTGCGAC+AGG | 0.519290 | 2.4:+5075789 | MS.gene85274:CDS |
AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2.4:-5075776 | None:intergenic |
TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2.4:+5076623 | MS.gene85274:CDS |
AGTTAGATTTCATGGCCACT+TGG | 0.554538 | 2.4:-5075815 | None:intergenic |
TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2.4:-5076620 | None:intergenic |
TACCTGTCGCAAGGAAGCGC+TGG | 0.556206 | 2.4:-5075791 | None:intergenic |
AGACGACGAACAAACTCACT+TGG | 0.565694 | 2.4:+5075845 | MS.gene85274:CDS |
GACGAATCGATTCATTTACC+TGG | 0.577934 | 2.4:+5075750 | MS.gene85274:CDS |
GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2.4:+5076636 | MS.gene85274:CDS |
ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2.4:+5076637 | MS.gene85274:CDS |
AGCTTGCAAGCAAGCATCAG+AGG | 0.588673 | 2.4:+5074926 | MS.gene85274:CDS |
TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 2.4:+5076672 | MS.gene85274:CDS |
AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2.4:-5075939 | None:intergenic |
GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2.4:-5076842 | None:intergenic |
CCACTTGGATACCTGTCGCA+AGG | 0.630313 | 2.4:-5075800 | None:intergenic |
ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2.4:-5075938 | None:intergenic |
GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2.4:-5076709 | None:intergenic |
TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2.4:-5075937 | None:intergenic |
AGACAGGGCACTCTTCTGTG+AGG | 0.698154 | 2.4:+5075722 | MS.gene85274:CDS |
CCTTGCGACAGGTATCCAAG+TGG | 0.753321 | 2.4:+5075800 | MS.gene85274:CDS |
AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2.4:-5075936 | None:intergenic |
AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2.4:+5076633 | MS.gene85274:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAATAAACTCAAATAAAT+CGG | + | chr2.4:5075558-5075577 | MS.gene85274:intron | 10.0% |
!! | AAATTATAAAGTATACTTTC+TGG | + | chr2.4:5075205-5075224 | MS.gene85274:intron | 15.0% |
!! | TTTCTTATCTTAATAAGATT+AGG | + | chr2.4:5075256-5075275 | MS.gene85274:intron | 15.0% |
!!! | AGACAAAAAAACATTTTATA+AGG | - | chr2.4:5076105-5076124 | None:intergenic | 15.0% |
!! | AAAAAACAGAGAGAAAATTA+AGG | - | chr2.4:5075017-5075036 | None:intergenic | 20.0% |
!! | ACATAATAAGTAACAGTTAT+AGG | - | chr2.4:5075636-5075655 | None:intergenic | 20.0% |
!! | ACATTTCTTGTATTTAATCA+TGG | - | chr2.4:5076528-5076547 | None:intergenic | 20.0% |
!! | ATCATGTATCATTAGATAAT+AGG | - | chr2.4:5076352-5076371 | None:intergenic | 20.0% |
!! | ATCTAATGATACATGATTAA+GGG | + | chr2.4:5076355-5076374 | MS.gene85274:intron | 20.0% |
!! | CATTTCTTGTATTTAATCAT+GGG | - | chr2.4:5076527-5076546 | None:intergenic | 20.0% |
!! | TATCTAATGATACATGATTA+AGG | + | chr2.4:5076354-5076373 | MS.gene85274:intron | 20.0% |
!! | TGAAATCGAATATTTAACTA+AGG | - | chr2.4:5076067-5076086 | None:intergenic | 20.0% |
!!! | TTACAAAACTACATGTTTTT+AGG | - | chr2.4:5076138-5076157 | None:intergenic | 20.0% |
!!! | TTACAAATTTTGTTAGTTCA+TGG | - | chr2.4:5076039-5076058 | None:intergenic | 20.0% |
!!! | TTGCAACTTTATTTCATAAT+TGG | + | chr2.4:5076000-5076019 | MS.gene85274:intron | 20.0% |
!!! | TTTTGTTATAATTGAGCTAA+GGG | - | chr2.4:5076319-5076338 | None:intergenic | 20.0% |
! | ACTATTTACATAAGTCATTC+TGG | + | chr2.4:5075488-5075507 | MS.gene85274:intron | 25.0% |
! | CTTAGCTCAATTATAACAAA+AGG | + | chr2.4:5076318-5076337 | MS.gene85274:intron | 25.0% |
! | TGAAGCACAATAAGAAAAAA+AGG | - | chr2.4:5076592-5076611 | None:intergenic | 25.0% |
! | TTAATCATGGGAAAATACTT+GGG | - | chr2.4:5076515-5076534 | None:intergenic | 25.0% |
! | TTCATACATGAGTAACTAAT+AGG | + | chr2.4:5075105-5075124 | MS.gene85274:intron | 25.0% |
! | TTTAATCATGGGAAAATACT+TGG | - | chr2.4:5076516-5076535 | None:intergenic | 25.0% |
!! | AATCCTAAAGTGTTTAAAAG+AGG | - | chr2.4:5075378-5075397 | None:intergenic | 25.0% |
!! | TAACCTCTTTTAAACACTTT+AGG | + | chr2.4:5075372-5075391 | MS.gene85274:intron | 25.0% |
!! | TAAGGTGCTAATTAATTACT+TGG | - | chr2.4:5074999-5075018 | None:intergenic | 25.0% |
!!! | CTTTTGTTATAATTGAGCTA+AGG | - | chr2.4:5076320-5076339 | None:intergenic | 25.0% |
AAAGTTAAGACAACATACCT+TGG | - | chr2.4:5075135-5075154 | None:intergenic | 30.0% | |
AGTTTCTGTGTGATGAATAA+TGG | - | chr2.4:5076741-5076760 | None:intergenic | 30.0% | |
ATAAAACAACAAAGACAGCT+AGG | + | chr2.4:5076222-5076241 | MS.gene85274:intron | 30.0% | |
GTACGAACTAAACTAAAATG+TGG | + | chr2.4:5076161-5076180 | MS.gene85274:intron | 30.0% | |
TAAAACAACAAAGACAGCTA+GGG | + | chr2.4:5076223-5076242 | MS.gene85274:intron | 30.0% | |
! | CATATTTTGTGTTGAAGACA+GGG | + | chr2.4:5075707-5075726 | MS.gene85274:CDS | 30.0% |
! | TCATATTTTGTGTTGAAGAC+AGG | + | chr2.4:5075706-5075725 | MS.gene85274:CDS | 30.0% |
! | TTTTCTTATTGTGCTTCAGA+AGG | + | chr2.4:5076594-5076613 | MS.gene85274:intron | 30.0% |
AAGTAGCATGTATGAGTTAG+TGG | + | chr2.4:5075290-5075309 | MS.gene85274:intron | 35.0% | |
ACTTGATGTGTATTCCTCTT+AGG | - | chr2.4:5075876-5075895 | None:intergenic | 35.0% | |
ACTTGGCATATGTCACATTT+AGG | - | chr2.4:5074982-5075001 | None:intergenic | 35.0% | |
AGTAACTAATAGGTCATCCA+AGG | + | chr2.4:5075115-5075134 | MS.gene85274:intron | 35.0% | |
AGTAGCATGTATGAGTTAGT+GGG | + | chr2.4:5075291-5075310 | MS.gene85274:intron | 35.0% | |
ATTAAATCTGGGTCACACAA+AGG | - | chr2.4:5076472-5076491 | None:intergenic | 35.0% | |
CTTGGCATATGTCACATTTA+GGG | - | chr2.4:5074981-5075000 | None:intergenic | 35.0% | |
TCACGTATGAGTTCAATTCT+AGG | - | chr2.4:5076790-5076809 | None:intergenic | 35.0% | |
TGTATGAGTTAGTGGGAATT+AGG | + | chr2.4:5075298-5075317 | MS.gene85274:intron | 35.0% | |
TTTGTTAGACATGTGTGACT+TGG | - | chr2.4:5076764-5076783 | None:intergenic | 35.0% | |
!! | CAATTGTCTAAGAGCATCTT+TGG | - | chr2.4:5075585-5075604 | None:intergenic | 35.0% |
AATAAGTCATCAACACCCCA+AGG | - | chr2.4:5075942-5075961 | None:intergenic | 40.0% | |
AGTTAGATTTCATGGCCACT+TGG | - | chr2.4:5075818-5075837 | None:intergenic | 40.0% | |
ATAAGTCATCAACACCCCAA+GGG | - | chr2.4:5075941-5075960 | None:intergenic | 40.0% | |
CTTCACCTGTATGTACAAAC+AGG | + | chr2.4:5075671-5075690 | MS.gene85274:intron | 40.0% | |
CTTGTCCTGTTTGTACATAC+AGG | - | chr2.4:5075679-5075698 | None:intergenic | 40.0% | |
GCACAACAAATCATTGTTGC+AGG | - | chr2.4:5074853-5074872 | None:intergenic | 40.0% | |
GTACATACAGGTGAAGCAAA+AGG | - | chr2.4:5075667-5075686 | None:intergenic | 40.0% | |
GTCACCGTGACATTAAATCT+GGG | - | chr2.4:5076417-5076398 | None:intergenic | 40.0% | |
GTGACCCAGATTTAATGTCA+CGG | + | chr2.4:5076476-5076495 | MS.gene85274:intron | 40.0% | |
GTGGCTCAGATTTAATGTCA+CGG | - | chr2.4:5076405-5076424 | None:intergenic | 40.0% | |
TGATGTGTATTCCTCTTAGG+TGG | - | chr2.4:5075873-5075892 | None:intergenic | 40.0% | |
TGTCACCGTGACATTAAATC+TGG | - | chr2.4:5076416-5076397 | None:intergenic | 40.0% | |
TTTGGCGCAGTTAGATTTCA+TGG | - | chr2.4:5075826-5075845 | None:intergenic | 40.0% | |
! | GACGAATCGATTCATTTACC+TGG | + | chr2.4:5075750-5075769 | MS.gene85274:CDS | 40.0% |
!! | ACATGATTAAGGGAAGCACT+TGG | + | chr2.4:5076365-5076384 | MS.gene85274:intron | 40.0% |
!! | CATGATTAAGGGAAGCACTT+GGG | + | chr2.4:5076366-5076385 | MS.gene85274:intron | 40.0% |
!! | TTGGGGTGTTGATGACTTAT+TGG | + | chr2.4:5075941-5075960 | MS.gene85274:CDS | 40.0% |
AGACGACGAACAAACTCACT+TGG | + | chr2.4:5075845-5075864 | MS.gene85274:CDS | 45.0% | |
AGAGATGGAATGGTTCACAG+AGG | + | chr2.4:5076633-5076652 | MS.gene85274:CDS | 45.0% | |
ATGGAATGGTTCACAGAGGA+GGG | + | chr2.4:5076637-5076656 | MS.gene85274:CDS | 45.0% | |
CAGAAGGATTCCATGCAGTT+TGG | + | chr2.4:5076610-5076629 | MS.gene85274:intron | 45.0% | |
TAAGTCATCAACACCCCAAG+GGG | - | chr2.4:5075940-5075959 | None:intergenic | 45.0% | |
TACTTTACCGTGCCTGATCT+TGG | + | chr2.4:5076835-5076854 | MS.gene85274:CDS | 45.0% | |
TGACTTCACTCAAGAAGCCA+TGG | + | chr2.4:5076672-5076691 | MS.gene85274:CDS | 45.0% | |
TGCAGTTTGGAGAGATGGAA+TGG | + | chr2.4:5076623-5076642 | MS.gene85274:CDS | 45.0% | |
TGGTTGCTAGCATGAGTTAC+TGG | - | chr2.4:5076721-5076740 | None:intergenic | 45.0% | |
TTCCATCTCTCCAAACTGCA+TGG | - | chr2.4:5076623-5076642 | None:intergenic | 45.0% | |
TTCCATGCAGTTTGGAGAGA+TGG | + | chr2.4:5076618-5076637 | MS.gene85274:CDS | 45.0% | |
! | CTTTCTGGAGATGTAGTGTG+AGG | + | chr2.4:5075220-5075239 | MS.gene85274:intron | 45.0% |
! | GTGAGTTTGTTCGTCGTCTT+TGG | - | chr2.4:5075844-5075863 | None:intergenic | 45.0% |
! | TGATTTGCAGAAAGGCTTCC+AGG | - | chr2.4:5075771-5075790 | None:intergenic | 45.0% |
! | TTCACAGAGGAGGGTCTTTT+TGG | + | chr2.4:5076646-5076665 | MS.gene85274:CDS | 45.0% |
!! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr2.4:5076457-5076476 | None:intergenic | 45.0% |
AAGTCATCAACACCCCAAGG+GGG | - | chr2.4:5075939-5075958 | None:intergenic | 50.0% | |
ACACATTGCCACACAGCATC+TGG | + | chr2.4:5076430-5076449 | MS.gene85274:intron | 50.0% | |
AGCTTGCAAGCAAGCATCAG+AGG | + | chr2.4:5074926-5074945 | MS.gene85274:CDS | 50.0% | |
CACATTGCCACACAGCATCT+GGG | + | chr2.4:5076431-5076450 | MS.gene85274:intron | 50.0% | |
CTCACTTGGAACCACCTAAG+AGG | + | chr2.4:5075859-5075878 | MS.gene85274:CDS | 50.0% | |
GATGGAATGGTTCACAGAGG+AGG | + | chr2.4:5076636-5076655 | MS.gene85274:CDS | 50.0% | |
GCATGAGTTACTGGAAGCTG+AGG | - | chr2.4:5076712-5076731 | None:intergenic | 50.0% | |
GTGTGGCAATGTGTGTTGTG+TGG | - | chr2.4:5076424-5076443 | None:intergenic | 50.0% | |
! | AAGTCAGGCACTTGCTGAGA+AGG | - | chr2.4:5075912-5075931 | None:intergenic | 50.0% |
!! | AGCGCTGGTGATTTGCAGAA+AGG | - | chr2.4:5075779-5075798 | None:intergenic | 50.0% |
AGGAACTTCAGCTGCAGCCA+TGG | - | chr2.4:5076692-5076711 | None:intergenic | 55.0% | |
CCACTTGGATACCTGTCGCA+AGG | - | chr2.4:5075803-5075822 | None:intergenic | 55.0% | |
CCTGACTTTACACCCCCTTG+GGG | + | chr2.4:5075924-5075943 | MS.gene85274:CDS | 55.0% | |
CCTTGCGACAGGTATCCAAG+TGG | + | chr2.4:5075800-5075819 | MS.gene85274:CDS | 55.0% | |
GCCTGACTTTACACCCCCTT+GGG | + | chr2.4:5075923-5075942 | MS.gene85274:CDS | 55.0% | |
TGCCTGACTTTACACCCCCT+TGG | + | chr2.4:5075922-5075941 | MS.gene85274:CDS | 55.0% | |
! | AGACAGGGCACTCTTCTGTG+AGG | + | chr2.4:5075722-5075741 | MS.gene85274:CDS | 55.0% |
TGTGTGGCCCAGATGCTGTG+TGG | - | chr2.4:5076441-5076460 | None:intergenic | 60.0% | |
! | CCCCAAGGGGGTGTAAAGTC+AGG | - | chr2.4:5075927-5075946 | None:intergenic | 60.0% |
! | TACCTGTCGCAAGGAAGCGC+TGG | - | chr2.4:5075794-5075813 | None:intergenic | 60.0% |
CACCAGCGCTTCCTTGCGAC+AGG | + | chr2.4:5075789-5075808 | MS.gene85274:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 5074817 | 5076861 | 5074817 | ID=MS.gene85274 |
chr2.4 | mRNA | 5074817 | 5076861 | 5074817 | ID=MS.gene85274.t1;Parent=MS.gene85274 |
chr2.4 | exon | 5074817 | 5074999 | 5074817 | ID=MS.gene85274.t1.exon1;Parent=MS.gene85274.t1 |
chr2.4 | CDS | 5074817 | 5074999 | 5074817 | ID=cds.MS.gene85274.t1;Parent=MS.gene85274.t1 |
chr2.4 | exon | 5075693 | 5075992 | 5075693 | ID=MS.gene85274.t1.exon2;Parent=MS.gene85274.t1 |
chr2.4 | CDS | 5075693 | 5075992 | 5075693 | ID=cds.MS.gene85274.t1;Parent=MS.gene85274.t1 |
chr2.4 | exon | 5076613 | 5076861 | 5076613 | ID=MS.gene85274.t1.exon3;Parent=MS.gene85274.t1 |
chr2.4 | CDS | 5076613 | 5076861 | 5076613 | ID=cds.MS.gene85274.t1;Parent=MS.gene85274.t1 |
Gene Sequence |
Protein sequence |