AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85355

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85355.t1 MTR_3g006370 51.852 108 49 2 89 196 49 153 4.94e-28 107
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 55 158 7.07e-26 101
MS.gene85355.t1 MTR_2g098880 43.860 114 62 2 88 201 59 170 7.30e-26 101
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 55 158 7.53e-26 101
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 75 178 7.93e-26 101
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 75 178 8.08e-26 101
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 73 176 8.19e-26 101
MS.gene85355.t1 MTR_2g098880 43.860 114 62 2 88 201 71 182 9.39e-26 101
MS.gene85355.t1 MTR_4g067290 51.376 109 48 3 89 197 115 218 2.08e-25 101
MS.gene85355.t1 MTR_2g098920 52.294 109 47 3 89 197 79 182 5.31e-25 99.8
MS.gene85355.t1 MTR_0402s0040 36.691 139 84 2 90 228 26 160 1.80e-22 95.9
MS.gene85355.t1 MTR_1g070355 34.014 147 93 3 94 239 78 221 1.52e-19 87.4
MS.gene85355.t1 MTR_5g015480 36.486 148 83 4 94 233 60 204 2.72e-18 81.6
MS.gene85355.t1 MTR_0853s0010 29.655 145 91 2 86 226 21 158 7.78e-18 78.2
MS.gene85355.t1 MTR_1g019850 32.117 137 83 2 90 226 70 196 1.99e-17 79.0
MS.gene85355.t1 MTR_7g113010 32.704 159 89 4 52 210 420 560 1.50e-16 78.6
MS.gene85355.t1 MTR_7g028855 36.154 130 81 2 94 223 124 251 3.79e-15 74.3
MS.gene85355.t1 MTR_4g035820 29.091 220 134 6 23 235 16 220 5.62e-15 74.3
MS.gene85355.t1 MTR_2g070590 35.294 102 63 1 94 195 21 119 7.25e-15 69.3
MS.gene85355.t1 MTR_2g101460 30.387 181 106 5 54 218 5 181 1.06e-14 70.9
MS.gene85355.t1 MTR_7g446520 33.974 156 80 4 81 236 82 214 7.50e-14 70.1
MS.gene85355.t1 MTR_2g101460 37.008 127 74 3 94 218 49 171 8.95e-14 68.2
MS.gene85355.t1 MTR_5g076070 29.851 134 92 2 93 226 56 187 1.12e-13 69.3
MS.gene85355.t1 MTR_6g017200 32.110 109 71 1 80 188 48 153 3.03e-13 65.9
MS.gene85355.t1 MTR_1g057920 31.452 124 81 2 59 182 4 123 4.45e-13 64.3
MS.gene85355.t1 MTR_6g051425 26.846 149 97 3 93 235 20 162 4.38e-12 65.1
MS.gene85355.t1 MTR_1g008290 34.043 94 55 3 144 237 4 90 2.64e-11 60.1
MS.gene85355.t1 MTR_3g450850 28.022 182 119 4 63 235 20 198 6.41e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85355.t1 AT4G38180 88.079 151 17 1 87 237 70 219 2.21e-80 256
MS.gene85355.t1 AT3G07500 50.909 110 50 2 88 197 31 136 1.52e-29 110
MS.gene85355.t1 AT3G59470 52.679 112 48 3 86 197 66 172 6.80e-29 109
MS.gene85355.t1 AT3G59470 52.679 112 48 3 86 197 66 172 6.80e-29 109
MS.gene85355.t1 AT3G59470 52.679 112 48 3 86 197 78 184 9.00e-29 109
MS.gene85355.t1 AT2G43280 48.739 119 56 3 88 204 20 135 1.35e-27 105
MS.gene85355.t1 AT4G15090 37.956 137 80 3 87 223 48 179 1.78e-22 96.3
MS.gene85355.t1 AT4G15090 37.956 137 80 3 87 223 48 179 1.78e-22 96.3
MS.gene85355.t1 AT4G15090 37.956 137 80 3 87 223 48 179 1.78e-22 96.3
MS.gene85355.t1 AT4G15090 37.956 137 80 3 87 223 48 179 1.78e-22 96.3
MS.gene85355.t1 AT4G15090 37.956 137 80 3 87 223 48 179 1.78e-22 96.3
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 1.94e-22 95.9
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 2.10e-22 95.9
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 2.10e-22 95.9
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 2.14e-22 95.9
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 2.14e-22 95.9
MS.gene85355.t1 AT2G32250 38.462 143 79 4 72 214 22 155 2.14e-22 95.9
MS.gene85355.t1 AT3G22170 39.231 130 58 3 87 201 67 190 7.40e-22 94.4
MS.gene85355.t1 AT3G22170 39.231 130 58 3 87 201 67 190 7.40e-22 94.4
MS.gene85355.t1 AT1G76320 44.828 116 56 4 94 209 1 108 3.46e-21 92.4
MS.gene85355.t1 AT1G76320 44.828 116 56 4 94 209 1 108 3.63e-21 92.4
MS.gene85355.t1 AT1G76320 44.828 116 56 4 94 209 1 108 3.63e-21 92.4
MS.gene85355.t1 AT2G32250 40.496 121 65 3 94 214 1 114 4.41e-21 92.0
MS.gene85355.t1 AT2G32250 40.496 121 65 3 94 214 1 114 4.45e-21 92.0
MS.gene85355.t1 AT1G76320 44.828 116 56 4 94 209 1 108 4.88e-21 92.0
MS.gene85355.t1 AT2G43280 46.078 102 50 3 105 204 2 100 6.02e-20 84.0
MS.gene85355.t1 AT4G12850 41.121 107 56 2 89 195 10 109 3.40e-19 81.3
MS.gene85355.t1 AT4G12850 41.121 107 56 2 89 195 10 109 4.15e-19 81.3
MS.gene85355.t1 AT4G12850 41.121 107 56 2 89 195 10 109 1.03e-18 81.3
MS.gene85355.t1 AT5G28530 36.913 149 87 4 90 235 55 199 1.22e-17 82.0
MS.gene85355.t1 AT5G28530 36.913 149 87 4 90 235 55 199 1.22e-17 82.0
MS.gene85355.t1 AT5G28530 36.913 149 87 4 90 235 55 199 1.22e-17 82.0
MS.gene85355.t1 AT5G28530 36.913 149 87 4 90 235 55 199 1.40e-17 81.6
MS.gene85355.t1 AT5G28530 36.913 149 87 4 90 235 55 199 1.41e-17 81.6
MS.gene85355.t1 AT5G18960 33.784 148 71 5 58 195 1 131 3.56e-17 80.9
MS.gene85355.t1 AT5G18960 35.000 120 61 2 78 197 199 301 5.84e-16 77.0
MS.gene85355.t1 AT5G18960 33.784 148 71 5 58 195 1 131 3.56e-17 80.9
MS.gene85355.t1 AT5G18960 35.000 120 61 2 78 197 199 301 5.84e-16 77.0
MS.gene85355.t1 AT3G06250 39.815 108 48 3 88 195 26 116 9.44e-17 79.3
MS.gene85355.t1 AT3G06250 38.532 109 50 2 89 197 189 280 1.57e-16 79.0
MS.gene85355.t1 AT3G06250 39.815 108 48 3 88 195 26 116 9.44e-17 79.3
MS.gene85355.t1 AT3G06250 38.532 109 50 2 89 197 189 280 1.57e-16 79.0
MS.gene85355.t1 AT3G06250 39.815 108 48 3 88 195 26 116 9.44e-17 79.3
MS.gene85355.t1 AT3G06250 38.532 109 50 2 89 197 189 280 1.57e-16 79.0
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 32 149 1.18e-16 79.3
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 18 135 1.27e-16 79.0
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 18 135 1.27e-16 79.0
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 18 135 1.30e-16 79.0
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 18 135 1.45e-16 79.0
MS.gene85355.t1 AT4G19990 38.525 122 58 3 87 195 18 135 1.45e-16 79.0
MS.gene85355.t1 AT2G27110 33.803 142 71 4 79 216 34 156 3.85e-16 77.8
MS.gene85355.t1 AT2G27110 33.803 142 71 4 79 216 34 156 3.85e-16 77.8
MS.gene85355.t1 AT1G10240 32.468 154 99 4 85 235 43 194 2.04e-15 75.5
MS.gene85355.t1 AT1G10240 32.468 154 99 4 85 235 43 194 2.04e-15 75.5
MS.gene85355.t1 AT1G52520 32.692 156 76 7 48 195 48 182 3.23e-13 68.9
MS.gene85355.t1 AT1G80010 35.714 112 56 4 90 197 95 194 6.58e-12 65.1

Find 64 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTACCCACCGTCAAATTTC+TGG 0.107207 2.1:-47015711 MS.gene85355:CDS
CAGCCTGTAGAGTGTCAATT+AGG 0.261268 2.1:+47015676 None:intergenic
TTCACGTGAACCTGGGGTTT+TGG 0.287862 2.1:-47017428 MS.gene85355:CDS
CACTCTACAGGCTGCTGGTA+TGG 0.289290 2.1:-47015667 MS.gene85355:CDS
TCTGCCAAGTGGATCGTATC+TGG 0.294800 2.1:-47015789 MS.gene85355:CDS
GCGTTTGATCTCTCTGTCTT+TGG 0.332960 2.1:+47015872 None:intergenic
TTCTTGGATTCACGTGAACC+TGG 0.340920 2.1:-47017436 MS.gene85355:CDS
CCTCACAAGGTTCCAGATCT+TGG 0.361684 2.1:+47016069 None:intergenic
TTCTCTCACCGTCCAAGATC+TGG 0.384729 2.1:-47016081 MS.gene85355:CDS
AGATTGATCATGGAGCTTCT+TGG 0.397884 2.1:-47017452 MS.gene85355:CDS
GACGAATCAGCGGTTGAGTT+CGG 0.409330 2.1:-47017406 MS.gene85355:CDS
AGCCTGTAGAGTGTCAATTA+GGG 0.418252 2.1:+47015677 None:intergenic
CGAAGGCAGTGAACCTGATC+GGG 0.450486 2.1:+47015732 None:intergenic
CGAACTTGTTCCACCCGATC+AGG 0.450679 2.1:-47015745 MS.gene85355:CDS
ACTCTACAGGCTGCTGGTAT+GGG 0.465336 2.1:-47015666 MS.gene85355:CDS
GTTGAGTTCGGTGGTTGAAT+CGG 0.470028 2.1:-47017394 MS.gene85355:CDS
CCAACCCTAGTGACTGTTCG+TGG 0.474439 2.1:+47015849 None:intergenic
TCTGGAACCTTGTGAGGGTA+TGG 0.478389 2.1:-47016063 MS.gene85355:CDS
TTACATCATCATCATCGGCT+TGG 0.483630 2.1:+47015612 None:intergenic
AATTCCTATGCTCGTTGTGT+TGG 0.484218 2.1:-47016005 MS.gene85355:CDS
TCTTGGATTCACGTGAACCT+GGG 0.490750 2.1:-47017435 MS.gene85355:CDS
CGAGTCTGAAGAGGCTGCTA+AGG 0.500073 2.1:-47016036 MS.gene85355:CDS
TTGCAATGCGTATATAGCTT+CGG 0.501369 2.1:-47017480 MS.gene85355:CDS
TTACAGATCCAGAAATTTGA+CGG 0.503136 2.1:+47015703 None:intergenic
AACCCTAATTGACACTCTAC+AGG 0.506142 2.1:-47015679 MS.gene85355:CDS
GAGACAATTCGTTTGTGCTA+AGG 0.519061 2.1:-47015925 MS.gene85355:CDS
GTTCGAATGAGGATTGAGCT+TGG 0.524430 2.1:+47016111 None:intergenic
CAATTCGTTTGTGCTAAGGA+AGG 0.537258 2.1:-47015921 MS.gene85355:CDS
CCAAGATCTGGAACCTTGTG+AGG 0.539164 2.1:-47016069 MS.gene85355:CDS
ACGAAGGCAGTGAACCTGAT+CGG 0.540515 2.1:+47015731 None:intergenic
CTTGGATTCACGTGAACCTG+GGG 0.540818 2.1:-47017434 MS.gene85355:CDS
TCTCGTCGTTCTCGCCGCTA+CGG 0.548020 2.1:-47015960 MS.gene85355:CDS
ATTGACACTCTACAGGCTGC+TGG 0.555898 2.1:-47015672 MS.gene85355:CDS
AATTCGTTTGTGCTAAGGAA+GGG 0.559501 2.1:-47015920 MS.gene85355:CDS
GAATGAGGATTGAGCTTGGA+CGG 0.567263 2.1:+47016115 None:intergenic
ATAGAAAGAAACAACAAGGA+AGG 0.572398 2.1:+47017525 None:intergenic
TTCGGATCAGAGATTGATCA+TGG 0.572901 2.1:-47017462 MS.gene85355:CDS
GAAACCAACACAACGAGCAT+AGG 0.573090 2.1:+47016001 None:intergenic
TGCACGATTCTTCTGCCAAG+TGG 0.580316 2.1:-47015800 MS.gene85355:CDS
AGAACGGTGGAGTTCGAATG+AGG 0.584000 2.1:+47016100 None:intergenic
GAAACAACAAGGAAGGAGCA+AGG 0.585031 2.1:+47017532 None:intergenic
GAATCAGCGGTTGAGTTCGG+TGG 0.589597 2.1:-47017403 MS.gene85355:CDS
GATCTTGGACGGTGAGAGAA+CGG 0.592223 2.1:+47016084 None:intergenic
AACGCCCACGAACAGTCACT+AGG 0.593060 2.1:-47015854 MS.gene85355:CDS
CCACGAACAGTCACTAGGGT+TGG 0.604393 2.1:-47015849 MS.gene85355:CDS
GCTGATTCGTCCAAAACCCC+AGG 0.605559 2.1:+47017418 None:intergenic
AAATTTGACGGTGGGTACGA+AGG 0.605624 2.1:+47015715 None:intergenic
AGATCCAGAAATTTGACGGT+GGG 0.606973 2.1:+47015707 None:intergenic
AACGACGAGAAGAACTGACT+CGG 0.618808 2.1:+47015973 None:intergenic
ACGACGAGAAGAACTGACTC+GGG 0.622470 2.1:+47015974 None:intergenic
TATGGAATTCGAGTCTGAAG+AGG 0.624053 2.1:-47016045 MS.gene85355:CDS
CAACCCTAGTGACTGTTCGT+GGG 0.628389 2.1:+47015850 None:intergenic
ACAAGGTTCCAGATCTTGGA+CGG 0.631403 2.1:+47016073 None:intergenic
AGGCAGTGAACCTGATCGGG+TGG 0.632274 2.1:+47015735 None:intergenic
CAGATCCAGAAATTTGACGG+TGG 0.639470 2.1:+47015706 None:intergenic
ACGCCCACGAACAGTCACTA+GGG 0.639492 2.1:-47015853 MS.gene85355:CDS
CAAGATCTGGAACCTTGTGA+GGG 0.660890 2.1:-47016068 MS.gene85355:CDS
GAAGCCAGATACGATCCACT+TGG 0.669193 2.1:+47015785 None:intergenic
AGCAATAGAAAGAAACAACA+AGG 0.696683 2.1:+47017521 None:intergenic
TCGAATTCCATACCCTCACA+AGG 0.706498 2.1:+47016056 None:intergenic
TGAGGATTGAGCTTGGACGG+TGG 0.711131 2.1:+47016118 None:intergenic
CTTGGACGGTGAGAGAACGG+TGG 0.717768 2.1:+47016087 None:intergenic
TCTGAATGATAGCTCCGTAG+CGG 0.723190 2.1:+47015946 None:intergenic
AGTGCAGACATAATTCTGTG+AGG 0.753924 2.1:+47015642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTTTAATTTTCATTT+TGG + chr2.1:47016234-47016253 None:intergenic 10.0%
!! ATTTGTAAAATTCATGTAAA+AGG + chr2.1:47016824-47016843 None:intergenic 15.0%
!! TTTGTAAAATTCATGTAAAA+GGG + chr2.1:47016823-47016842 None:intergenic 15.0%
!!! ACAATTTTAGAATTTAAACA+GGG - chr2.1:47016455-47016474 MS.gene85355:intron 15.0%
!!! AGAATTAAACAAGTATTTTT+AGG - chr2.1:47016918-47016937 MS.gene85355:intron 15.0%
!!! AAATTTTTAGTGACTTTTTG+TGG - chr2.1:47016003-47016022 MS.gene85355:CDS 20.0%
!!! ATTGTTTGAGTCTTTTAAAT+TGG + chr2.1:47016756-47016775 None:intergenic 20.0%
!!! GACAATTTTAGAATTTAAAC+AGG - chr2.1:47016454-47016473 MS.gene85355:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG - chr2.1:47016931-47016950 MS.gene85355:intron 20.0%
!!! TTTTAAAGACCAATAACATT+TGG - chr2.1:47016143-47016162 MS.gene85355:intron 20.0%
! GATAAAAATGAGTTAAATGC+AGG - chr2.1:47016783-47016802 MS.gene85355:intron 25.0%
!! AAAGACTCAAACAATTTTCA+AGG - chr2.1:47016761-47016780 MS.gene85355:intron 25.0%
!! ATGACTTCAAATGCAATTTT+TGG - chr2.1:47016529-47016548 MS.gene85355:intron 25.0%
!! CTTGTTTAATTCTTCTTTTC+TGG + chr2.1:47016911-47016930 None:intergenic 25.0%
!! GGAATTTTTGTGAAAATGAT+TGG - chr2.1:47016024-47016043 MS.gene85355:CDS 25.0%
!!! ACTGAAAGAAATTTTAACAC+AGG - chr2.1:47016625-47016644 MS.gene85355:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG - chr2.1:47016930-47016949 MS.gene85355:intron 25.0%
!!! TCAAATGCAATTTTTGGAAA+GGG - chr2.1:47016535-47016554 MS.gene85355:intron 25.0%
!!! TTCAAATGCAATTTTTGGAA+AGG - chr2.1:47016534-47016553 MS.gene85355:intron 25.0%
AGCAATAGAAAGAAACAACA+AGG + chr2.1:47015669-47015688 None:intergenic 30.0%
ATAGAAAGAAACAACAAGGA+AGG + chr2.1:47015665-47015684 None:intergenic 30.0%
TGGACTCTAACAACTTAAAA+GGG - chr2.1:47016178-47016197 MS.gene85355:intron 30.0%
TTACAGATCCAGAAATTTGA+CGG + chr2.1:47017487-47017506 None:intergenic 30.0%
TTGGACTCTAACAACTTAAA+AGG - chr2.1:47016177-47016196 MS.gene85355:intron 30.0%
TTTGACATGAGATTGAAACA+AGG - chr2.1:47016719-47016738 MS.gene85355:intron 30.0%
! ACGCAAATAACAAAAGTACA+AGG - chr2.1:47016207-47016226 MS.gene85355:intron 30.0%
! GCATTGTTATACCCTAATTT+TGG + chr2.1:47016945-47016964 None:intergenic 30.0%
!!! TGAAACTTTGTTTTTCCTTC+AGG + chr2.1:47016967-47016986 None:intergenic 30.0%
AAAAGACTAAAATGCCCCTA+GGG - chr2.1:47016490-47016509 MS.gene85355:intron 35.0%
AAATGACTAAAATGCCCCTA+GGG - chr2.1:47016648-47016667 MS.gene85355:intron 35.0%
AATTCGTTTGTGCTAAGGAA+GGG - chr2.1:47017267-47017286 MS.gene85355:intron 35.0%
ACCAATAACATTTGGACACA+TGG - chr2.1:47016151-47016170 MS.gene85355:intron 35.0%
AGCCTATATAAGTCAAACCA+TGG + chr2.1:47016066-47016085 None:intergenic 35.0%
GTGAAAATGATTGGTGAATG+TGG - chr2.1:47016033-47016052 MS.gene85355:CDS 35.0%
TAGAGAAAGAGATAAGGTAG+AGG + chr2.1:47016990-47017009 None:intergenic 35.0%
TCACGATAGAGAAAGAGATA+AGG + chr2.1:47016996-47017015 None:intergenic 35.0%
TTGCAATGCGTATATAGCTT+CGG - chr2.1:47015707-47015726 MS.gene85355:CDS 35.0%
! ATTGATGAACTTGGTGGTTA+TGG - chr2.1:47015821-47015840 MS.gene85355:CDS 35.0%
! GACCATGGTTTGACTTATAT+AGG - chr2.1:47016061-47016080 MS.gene85355:CDS 35.0%
! TTGATGAACTTGGTGGTTAT+GGG - chr2.1:47015822-47015841 MS.gene85355:CDS 35.0%
!! GTGCATTTTGACAGATAAAG+AGG + chr2.1:47017372-47017391 None:intergenic 35.0%
!! TTTAGTCGTTTTAGTCCCTA+GGG + chr2.1:47016352-47016371 None:intergenic 35.0%
!! TTTTAGTCGTTTTAGTCCCT+AGG + chr2.1:47016353-47016372 None:intergenic 35.0%
AAAGACTAAAATGCCCCTAG+GGG - chr2.1:47016491-47016510 MS.gene85355:intron 40.0%
AACCCTAATTGACACTCTAC+AGG - chr2.1:47017508-47017527 MS.gene85355:CDS 40.0%
AATGACTAAAATGCCCCTAG+GGG - chr2.1:47016649-47016668 MS.gene85355:intron 40.0%
AATTCCTATGCTCGTTGTGT+TGG - chr2.1:47017182-47017201 MS.gene85355:intron 40.0%
ACCAATAGGATAGAGACATG+TGG - chr2.1:47016102-47016121 MS.gene85355:CDS 40.0%
AGATCCAGAAATTTGACGGT+GGG + chr2.1:47017483-47017502 None:intergenic 40.0%
AGATTGATCATGGAGCTTCT+TGG - chr2.1:47015735-47015754 MS.gene85355:CDS 40.0%
AGTGCAGACATAATTCTGTG+AGG + chr2.1:47017548-47017567 None:intergenic 40.0%
ATAGGCTAAGTCTTTGACCT+TGG - chr2.1:47016079-47016098 MS.gene85355:CDS 40.0%
ATGGTCGGAGAAATTAGTTG+TGG - chr2.1:47015866-47015885 MS.gene85355:CDS 40.0%
CAATTCGTTTGTGCTAAGGA+AGG - chr2.1:47017266-47017285 MS.gene85355:intron 40.0%
GAAAAGACTAAAATGCCCCT+AGG - chr2.1:47016489-47016508 MS.gene85355:intron 40.0%
GAAATGACTAAAATGCCCCT+AGG - chr2.1:47016647-47016666 MS.gene85355:intron 40.0%
GAGACAATTCGTTTGTGCTA+AGG - chr2.1:47017262-47017281 MS.gene85355:intron 40.0%
GCCATGTGTCCAAATGTTAT+TGG + chr2.1:47016155-47016174 None:intergenic 40.0%
GGTGGTGACAAAAGTTGTTA+GGG - chr2.1:47015929-47015948 MS.gene85355:CDS 40.0%
TAGGGTATAACAATGCCTGA+AGG - chr2.1:47016949-47016968 MS.gene85355:intron 40.0%
TATGGAATTCGAGTCTGAAG+AGG - chr2.1:47017142-47017161 MS.gene85355:intron 40.0%
TGACTGAGAGTGAAAAAGTG+AGG + chr2.1:47017042-47017061 None:intergenic 40.0%
TGAGAGTGAAAAAGTGAGGA+AGG + chr2.1:47017038-47017057 None:intergenic 40.0%
TTCGGATCAGAGATTGATCA+TGG - chr2.1:47015725-47015744 MS.gene85355:CDS 40.0%
! AGCCTGTAGAGTGTCAATTA+GGG + chr2.1:47017513-47017532 None:intergenic 40.0%
! TGGTGGTGACAAAAGTTGTT+AGG - chr2.1:47015928-47015947 MS.gene85355:CDS 40.0%
!! TTAGTCGTTTTAGTCCCTAG+GGG + chr2.1:47016351-47016370 None:intergenic 40.0%
AAATGACCAAAACGCCCCTA+GGG - chr2.1:47016334-47016353 MS.gene85355:intron 45.0%
AAATTTGACGGTGGGTACGA+AGG + chr2.1:47017475-47017494 None:intergenic 45.0%
AACGACGAGAAGAACTGACT+CGG + chr2.1:47017217-47017236 None:intergenic 45.0%
ACAAGGTTCCAGATCTTGGA+CGG + chr2.1:47017117-47017136 None:intergenic 45.0%
ACATTTGGACACATGGCACT+TGG - chr2.1:47016158-47016177 MS.gene85355:intron 45.0%
ACGTGAGAGAGAAGAGAAGA+GGG - chr2.1:47015970-47015989 MS.gene85355:CDS 45.0%
ATTAGTTGTGGAGGAGGAAG+TGG - chr2.1:47015878-47015897 MS.gene85355:CDS 45.0%
CAGATCCAGAAATTTGACGG+TGG + chr2.1:47017484-47017503 None:intergenic 45.0%
GAAACAACAAGGAAGGAGCA+AGG + chr2.1:47015658-47015677 None:intergenic 45.0%
GAAACCAACACAACGAGCAT+AGG + chr2.1:47017189-47017208 None:intergenic 45.0%
GAATGAGGATTGAGCTTGGA+CGG + chr2.1:47017075-47017094 None:intergenic 45.0%
GCCACATGTCTCTATCCTAT+TGG + chr2.1:47016106-47016125 None:intergenic 45.0%
GCGTTTGATCTCTCTGTCTT+TGG + chr2.1:47017318-47017337 None:intergenic 45.0%
GGAGAAATTAGTTGTGGAGG+AGG - chr2.1:47015872-47015891 MS.gene85355:CDS 45.0%
GGTGACAAAAGTTGTTAGGG+TGG - chr2.1:47015932-47015951 MS.gene85355:CDS 45.0%
GTCGGAGAAATTAGTTGTGG+AGG - chr2.1:47015869-47015888 MS.gene85355:CDS 45.0%
GTCGTGATTGATGAACTTGG+TGG - chr2.1:47015815-47015834 MS.gene85355:CDS 45.0%
GTCTCTATCCTATTGGTCCA+AGG + chr2.1:47016099-47016118 None:intergenic 45.0%
GTCTTTGACCTTGGACCAAT+AGG - chr2.1:47016088-47016107 MS.gene85355:CDS 45.0%
GTGAATGTGGACTTTGACCA+TGG - chr2.1:47016046-47016065 MS.gene85355:CDS 45.0%
GTGGTTATGGGAGTTAGTTG+CGG - chr2.1:47015834-47015853 MS.gene85355:CDS 45.0%
GTTCGAATGAGGATTGAGCT+TGG + chr2.1:47017079-47017098 None:intergenic 45.0%
TACGTGAGAGAGAAGAGAAG+AGG - chr2.1:47015969-47015988 MS.gene85355:CDS 45.0%
TCGAATTCCATACCCTCACA+AGG + chr2.1:47017134-47017153 None:intergenic 45.0%
TCGGTCGTGATTGATGAACT+TGG - chr2.1:47015812-47015831 MS.gene85355:CDS 45.0%
TCTGAATGATAGCTCCGTAG+CGG + chr2.1:47017244-47017263 None:intergenic 45.0%
TCTTGGATTCACGTGAACCT+GGG - chr2.1:47015752-47015771 MS.gene85355:CDS 45.0%
TTCTTGGATTCACGTGAACC+TGG - chr2.1:47015751-47015770 MS.gene85355:CDS 45.0%
TTTAGTCAGCTTAGCCCCTA+GGG + chr2.1:47016666-47016685 None:intergenic 45.0%
! CAAGATCTGGAACCTTGTGA+GGG - chr2.1:47017119-47017138 MS.gene85355:intron 45.0%
! CAGCCTGTAGAGTGTCAATT+AGG + chr2.1:47017514-47017533 None:intergenic 45.0%
! GTTGAGTTCGGTGGTTGAAT+CGG - chr2.1:47015793-47015812 MS.gene85355:CDS 45.0%
! TTAGTTGCGGTGGTTTGTGA+TGG - chr2.1:47015847-47015866 MS.gene85355:CDS 45.0%
! TTGAGTCAGTTTTGCCCCTA+GGG + chr2.1:47016508-47016527 None:intergenic 45.0%
! TTTGAGTCAGTTTTGCCCCT+AGG + chr2.1:47016509-47016528 None:intergenic 45.0%
! TTTTAGTCAGCTTAGCCCCT+AGG + chr2.1:47016667-47016686 None:intergenic 45.0%
ACGAAGGCAGTGAACCTGAT+CGG + chr2.1:47017459-47017478 None:intergenic 50.0%
ACTCTACAGGCTGCTGGTAT+GGG - chr2.1:47017521-47017540 MS.gene85355:CDS 50.0%
AGAACGGTGGAGTTCGAATG+AGG + chr2.1:47017090-47017109 None:intergenic 50.0%
ATTGACACTCTACAGGCTGC+TGG - chr2.1:47017515-47017534 MS.gene85355:CDS 50.0%
CAACCCTAGTGACTGTTCGT+GGG + chr2.1:47017340-47017359 None:intergenic 50.0%
CCTCACAAGGTTCCAGATCT+TGG + chr2.1:47017121-47017140 None:intergenic 50.0%
CGTACCCACCGTCAAATTTC+TGG - chr2.1:47017476-47017495 MS.gene85355:CDS 50.0%
CTTGGATTCACGTGAACCTG+GGG - chr2.1:47015753-47015772 MS.gene85355:CDS 50.0%
GAAATGACCAAAACGCCCCT+AGG - chr2.1:47016333-47016352 MS.gene85355:intron 50.0%
GAAGCCAGATACGATCCACT+TGG + chr2.1:47017405-47017424 None:intergenic 50.0%
GACGAATCAGCGGTTGAGTT+CGG - chr2.1:47015781-47015800 MS.gene85355:CDS 50.0%
GATCTTGGACGGTGAGAGAA+CGG + chr2.1:47017106-47017125 None:intergenic 50.0%
GGATAGAGACATGTGGCACT+TGG - chr2.1:47016109-47016128 MS.gene85355:CDS 50.0%
GTTATGGGAGTTAGTTGCGG+TGG - chr2.1:47015837-47015856 MS.gene85355:CDS 50.0%
TCTGCCAAGTGGATCGTATC+TGG - chr2.1:47017398-47017417 MS.gene85355:CDS 50.0%
TGCACGATTCTTCTGCCAAG+TGG - chr2.1:47017387-47017406 MS.gene85355:intron 50.0%
TTAGTCAGCTTAGCCCCTAG+GGG + chr2.1:47016665-47016684 None:intergenic 50.0%
TTCTCTCACCGTCCAAGATC+TGG - chr2.1:47017106-47017125 MS.gene85355:intron 50.0%
! ACGACGAGAAGAACTGACTC+GGG + chr2.1:47017216-47017235 None:intergenic 50.0%
! CCAAGATCTGGAACCTTGTG+AGG - chr2.1:47017118-47017137 MS.gene85355:intron 50.0%
! GTGGATTGTGGTTGTTGTGG+TGG - chr2.1:47015900-47015919 MS.gene85355:CDS 50.0%
! TCTGGAACCTTGTGAGGGTA+TGG - chr2.1:47017124-47017143 MS.gene85355:intron 50.0%
! TGAGTCAGTTTTGCCCCTAG+GGG + chr2.1:47016507-47016526 None:intergenic 50.0%
! TGGTTGTTGTGGTGGTGAAG+TGG - chr2.1:47015908-47015927 MS.gene85355:CDS 50.0%
! TTCACGTGAACCTGGGGTTT+TGG - chr2.1:47015759-47015778 MS.gene85355:CDS 50.0%
! TTGCGGTGGTTTGTGATGGT+CGG - chr2.1:47015851-47015870 MS.gene85355:CDS 50.0%
! TTGTTGTGGTGGTGAAGTGG+TGG - chr2.1:47015911-47015930 MS.gene85355:CDS 50.0%
!! GTGGTGGATTGTGGTTGTTG+TGG - chr2.1:47015897-47015916 MS.gene85355:CDS 50.0%
!!! TGGGGTTTTGGACGAATCAG+CGG - chr2.1:47015771-47015790 MS.gene85355:CDS 50.0%
!!! TTTAGTCCCTAGGGGCGTTT+TGG + chr2.1:47016343-47016362 None:intergenic 50.0%
AACGCCCACGAACAGTCACT+AGG - chr2.1:47017333-47017352 MS.gene85355:intron 55.0%
ACGCCCACGAACAGTCACTA+GGG - chr2.1:47017334-47017353 MS.gene85355:intron 55.0%
AGTTGTGGAGGAGGAAGTGG+TGG - chr2.1:47015881-47015900 MS.gene85355:CDS 55.0%
CACTCTACAGGCTGCTGGTA+TGG - chr2.1:47017520-47017539 MS.gene85355:CDS 55.0%
CCAACCCTAGTGACTGTTCG+TGG + chr2.1:47017341-47017360 None:intergenic 55.0%
CCACGAACAGTCACTAGGGT+TGG - chr2.1:47017338-47017357 MS.gene85355:intron 55.0%
CGAAGGCAGTGAACCTGATC+GGG + chr2.1:47017458-47017477 None:intergenic 55.0%
CGAGTCTGAAGAGGCTGCTA+AGG - chr2.1:47017151-47017170 MS.gene85355:intron 55.0%
GAATCAGCGGTTGAGTTCGG+TGG - chr2.1:47015784-47015803 MS.gene85355:CDS 55.0%
TGAGGATTGAGCTTGGACGG+TGG + chr2.1:47017072-47017091 None:intergenic 55.0%
! CGAACTTGTTCCACCCGATC+AGG - chr2.1:47017442-47017461 MS.gene85355:CDS 55.0%
!! GAGGAGGAAGTGGTGGATTG+TGG - chr2.1:47015888-47015907 MS.gene85355:CDS 55.0%
!! GCTGATTCGTCCAAAACCCC+AGG + chr2.1:47015772-47015791 None:intergenic 55.0%
AGGCAGTGAACCTGATCGGG+TGG + chr2.1:47017455-47017474 None:intergenic 60.0%
CTTGGACGGTGAGAGAACGG+TGG + chr2.1:47017103-47017122 None:intergenic 60.0%
TCTCGTCGTTCTCGCCGCTA+CGG - chr2.1:47017227-47017246 MS.gene85355:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 47015623 47017586 47015623 ID=MS.gene85355
chr2.1 mRNA 47015623 47017586 47015623 ID=MS.gene85355.t1;Parent=MS.gene85355
chr2.1 exon 47017392 47017586 47017392 ID=MS.gene85355.t1.exon1;Parent=MS.gene85355.t1
chr2.1 CDS 47017392 47017586 47017392 ID=cds.MS.gene85355.t1;Parent=MS.gene85355.t1
chr2.1 exon 47015623 47016150 47015623 ID=MS.gene85355.t1.exon2;Parent=MS.gene85355.t1
chr2.1 CDS 47015623 47016150 47015623 ID=cds.MS.gene85355.t1;Parent=MS.gene85355.t1
Gene Sequence

>MS.gene85355

ATGTGTTGTGCGCTTGCGTCAGTGATTGAATTCCTTGCTCCTTCCTTGTTGTTTCTTTCTATTGCTGACGAATCTGAATATGAATTGCAATGCGTATATAGCTTCGGATCAGAGATTGATCATGGAGCTTCTTGGATTCACGTGAACCTGGGGTTTTGGACGAATCAGCGGTTGAGTTCGGTGGTTGAATCGGTCGTGATTGATGAACTTGGTGGTTATGGGAGTTAGTTGCGGTGGTTTGTGATGGTCGGAGAAATTAGTTGTGGAGGAGGAAGTGGTGGATTGTGGTTGTTGTGGTGGTGAAGTGGTGGTGACAAAAGTTGTTAGGGTGGTGAGAGAAAGTTGTTACGTGAGAGAGAAGAGAAGAGGGAAAAGAAAGAAAATTTTTAGTGACTTTTTGTGGAATTTTTGTGAAAATGATTGGTGAATGTGGACTTTGACCATGGTTTGACTTATATAGGCTAAGTCTTTGACCTTGGACCAATAGGATAGAGACATGTGGCACTTGGATCTAACAAACTTTTAAAGACCAATAACATTTGGACACATGGCACTTGGACTCTAACAACTTAAAAGGGATTAAAACGCAAATAACAAAAGTACAAGGACCAAAATGAAAATTAAAACTAAAATTGAATTGAAAAAGTAAATTGAAAATTAACGTAAAGCGAGATGATTAAAAACAACGAAGCAGACAAAAGTTTTTATGTGAAATGACCAAAACGCCCCTAGGGACTAAAACGACTAAAAATGACTCAAATGCAATTTTAAAATGATATTTTACAAGCAATTGAAGCAAAGACTCATACACGTAAAATTAAAAGACTCAGAGACAATTTTAGAATTTAAACAGGGTTTTAACGCATGAAAAGACTAAAATGCCCCTAGGGGCAAAACTGACTCAAAATGACTTCAAATGCAATTTTTGGAAAGGGTTTTGACATAGAATGAAACAAAGACTTATTCAAACTACTTGAAAAGACTCAAACAACACTTTAAAAGACTGAAAGAAATTTTAACACAGGAAATGACTAAAATGCCCCTAGGGGCTAAGCTGACTAAAAAATGACTCAACTGAATATTTTCTGAAATGAATTTTGACATGAGATTGAAACAAGGACTTATACAAACCAATTTAAAAGACTCAAACAATTTTCAAGGATAAAAATGAGTTAAATGCAGGAAATGACTAAAATACCCTTTTACATGAATTTTACAAATAATATTGAAATAAAATGCAGAGAAAGATGCAATTGATCAGAGACATATCAAATGACTTATAATGCCAGAAAAGAAGAATTAAACAAGTATTTTTAGGTCCAAAATTAGGGTATAACAATGCCTGAAGGAAAAACAAAGTTTCACCTCTACCTTATCTCTTTCTCTATCGTGAAACACATTCATTCGTTTTTCCTTCCTCACTTTTTCACTCTCAGTCAAAATACACCACCGTCCAAGCTCAATCCTCATTCGAACTCCACCGTTCTCTCACCGTCCAAGATCTGGAACCTTGTGAGGGTATGGAATTCGAGTCTGAAGAGGCTGCTAAGGCTTTCTATAATTCCTATGCTCGTTGTGTTGGTTTCAGTACCCGAGTCAGTTCTTCTCGTCGTTCTCGCCGCTACGGAGCTATCATTCAGAGACAATTCGTTTGTGCTAAGGAAGGGTTTCGCAATTTGAACGAGAAACGTACCAAAGACAGAGAGATCAAACGCCCACGAACAGTCACTAGGGTTGGATGCAAAGCCTCTTTATCTGTCAAAATGCACGATTCTTCTGCCAAGTGGATCGTATCTGGCTTCGTCAGAGAACACAATCACGAACTTGTTCCACCCGATCAGGTTCACTGCCTTCGTACCCACCGTCAAATTTCTGGATCTGTAAAAACCCTAATTGACACTCTACAGGCTGCTGGTATGGGTCCTCACAGAATTATGTCTGCACTCATCAAGCCAAGCCGATGA
Protein sequence

>MS.gene85355.t1

MCCALASVIEFLAPSLLFLSIADESEYELQCVYSFGSEIDHGASWIHVNLGFWTNQRLSSVVESVSKYTTVQAQSSFELHRSLTVQDLEPCEGMEFESEEAAKAFYNSYARCVGFSTRVSSSRRSRRYGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSAKWIVSGFVREHNHELVPPDQVHCLRTHRQISGSVKTLIDTLQAAGMGPHRIMSALIKPSR