AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85464

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85464.t1 MTR_7g079040 97.244 254 7 0 1 254 1 254 0.0 504
MS.gene85464.t1 MTR_8g028565 60.569 246 83 4 1 239 1 239 1.77e-80 246
MS.gene85464.t1 MTR_2g032030 60.000 130 42 1 135 254 238 367 1.64e-46 160
MS.gene85464.t1 MTR_2g032030 60.000 130 42 1 135 254 238 367 3.69e-46 161
MS.gene85464.t1 MTR_1g099600 66.667 111 35 2 132 240 162 272 1.62e-45 155
MS.gene85464.t1 MTR_8g098945 40.517 232 96 7 4 229 9 204 3.13e-40 140
MS.gene85464.t1 MTR_2g016770 60.440 91 30 1 134 218 9 99 1.13e-33 122
MS.gene85464.t1 MTR_7g109600 48.551 138 55 3 134 262 24 154 4.56e-33 122
MS.gene85464.t1 MTR_2g016770 61.364 88 28 1 137 218 4 91 7.10e-33 119
MS.gene85464.t1 MTR_8g087000 49.180 122 41 2 135 244 45 157 6.04e-32 118
MS.gene85464.t1 MTR_2g083870 58.947 95 28 1 135 218 50 144 1.46e-31 117
MS.gene85464.t1 MTR_8g087000 49.167 120 40 2 137 244 48 158 4.51e-31 116
MS.gene85464.t1 MTR_1g009613 62.195 82 26 2 135 211 238 319 4.15e-29 113
MS.gene85464.t1 MTR_4g127040 61.446 83 27 1 134 211 220 302 1.76e-28 110
MS.gene85464.t1 MTR_5g016610 60.241 83 28 1 134 211 174 256 9.54e-28 107
MS.gene85464.t1 MTR_4g094908 59.756 82 28 1 135 211 242 323 7.65e-27 107
MS.gene85464.t1 MTR_2g024380 46.729 107 56 1 122 227 219 325 1.86e-26 107
MS.gene85464.t1 MTR_1g070455 56.250 80 30 1 137 211 271 350 2.59e-24 100
MS.gene85464.t1 MTR_2g024350 54.430 79 35 1 150 227 4 82 1.07e-23 96.3
MS.gene85464.t1 MTR_3g108960 43.478 115 53 4 117 219 266 380 1.31e-23 99.0
MS.gene85464.t1 MTR_8g067635 46.602 103 47 2 130 224 318 420 3.67e-23 98.6
MS.gene85464.t1 MTR_0117s0040 41.284 109 58 2 108 211 24 131 3.86e-23 95.1
MS.gene85464.t1 MTR_8g067650 46.602 103 47 2 130 224 308 410 1.74e-22 96.7
MS.gene85464.t1 MTR_8g069935 44.681 94 51 1 133 225 310 403 7.59e-22 94.7
MS.gene85464.t1 MTR_6g053200 45.977 87 47 0 131 217 307 393 9.22e-21 91.7
MS.gene85464.t1 MTR_4g094588 59.016 61 24 1 155 215 179 238 7.92e-19 85.1
MS.gene85464.t1 MTR_7g011820 47.191 89 45 2 132 219 387 474 2.24e-18 84.7
MS.gene85464.t1 MTR_7g011820 29.078 141 82 4 85 214 153 286 4.75e-11 63.2
MS.gene85464.t1 MTR_7g110720 52.055 73 35 0 152 224 187 259 2.73e-18 84.0
MS.gene85464.t1 MTR_7g110720 52.055 73 35 0 152 224 214 286 3.16e-18 84.0
MS.gene85464.t1 MTR_7g109800 48.148 81 39 2 155 235 146 223 3.95e-18 82.4
MS.gene85464.t1 MTR_1g086790 41.176 102 49 4 130 222 127 226 4.20e-18 82.8
MS.gene85464.t1 MTR_5g042920 46.237 93 46 3 128 217 291 382 5.00e-18 83.6
MS.gene85464.t1 MTR_7g100510 45.918 98 36 3 133 214 324 420 7.19e-18 83.2
MS.gene85464.t1 MTR_7g100510 45.833 72 37 2 153 224 188 257 5.88e-13 68.6
MS.gene85464.t1 MTR_2g023930 54.688 64 29 0 151 214 302 365 2.42e-17 81.6
MS.gene85464.t1 MTR_5g091390 54.098 61 27 1 155 215 158 217 2.89e-17 80.1
MS.gene85464.t1 MTR_4g082580 52.239 67 31 1 151 217 275 340 6.15e-17 80.1
MS.gene85464.t1 MTR_4g082580 41.333 75 43 1 140 214 131 204 3.66e-12 66.2
MS.gene85464.t1 MTR_3g056100 41.667 108 46 4 131 222 379 485 7.84e-17 80.5
MS.gene85464.t1 MTR_3g056100 41.667 108 46 4 131 222 366 472 8.61e-17 80.1
MS.gene85464.t1 MTR_3g056100 41.667 108 46 4 131 222 235 341 1.15e-16 79.7
MS.gene85464.t1 MTR_3g056100 41.667 108 46 4 131 222 222 328 1.15e-16 79.7
MS.gene85464.t1 MTR_5g094430 36.066 122 58 3 120 222 314 434 2.09e-16 79.0
MS.gene85464.t1 MTR_4g049760 48.000 75 39 0 150 224 286 360 2.23e-16 79.0
MS.gene85464.t1 MTR_5g094430 36.066 122 58 3 120 222 202 322 2.61e-16 78.6
MS.gene85464.t1 MTR_5g094430 36.066 122 58 3 120 222 180 300 2.87e-16 78.2
MS.gene85464.t1 MTR_3g090860 42.574 101 51 3 147 245 126 221 5.87e-16 77.0
MS.gene85464.t1 MTR_4g132430 38.889 108 64 2 107 214 82 187 7.82e-16 76.6
MS.gene85464.t1 MTR_4g094412 56.140 57 25 0 159 215 239 295 8.73e-16 77.0
MS.gene85464.t1 MTR_4g094412 53.226 62 29 0 154 215 243 304 9.29e-16 77.0
MS.gene85464.t1 MTR_3g053330 44.595 74 41 0 151 224 248 321 9.88e-16 77.0
MS.gene85464.t1 MTR_4g049790 45.333 75 41 0 150 224 308 382 1.07e-15 77.0
MS.gene85464.t1 MTR_4g007060 43.243 74 42 0 152 225 126 199 1.16e-15 75.5
MS.gene85464.t1 MTR_7g009730 40.659 91 51 1 134 224 202 289 1.22e-15 76.6
MS.gene85464.t1 MTR_7g117200 43.299 97 42 3 131 214 88 184 1.33e-15 75.9
MS.gene85464.t1 MTR_7g109600 46.154 91 38 4 174 262 7 88 1.42e-15 73.6
MS.gene85464.t1 MTR_7g080020 36.036 111 66 3 110 219 451 557 1.45e-15 76.6
MS.gene85464.t1 MTR_7g080020 48.387 62 30 2 153 214 279 338 3.31e-11 63.5
MS.gene85464.t1 MTR_4g007060 43.243 74 42 0 152 225 160 233 1.48e-15 75.5
MS.gene85464.t1 MTR_8g099350 42.353 85 41 2 133 209 105 189 1.91e-15 75.5
MS.gene85464.t1 MTR_5g043880 56.140 57 24 1 155 211 125 180 2.00e-15 74.7
MS.gene85464.t1 MTR_4g132430 38.889 108 64 2 107 214 216 321 2.04e-15 75.9
MS.gene85464.t1 MTR_3g104750 41.758 91 51 2 123 213 74 162 2.62e-15 72.0
MS.gene85464.t1 MTR_7g062220 43.158 95 47 3 152 242 122 213 3.58e-15 74.3
MS.gene85464.t1 MTR_2g105060 43.077 65 37 0 152 216 92 156 4.07e-15 73.2
MS.gene85464.t1 MTR_2g045360 50.000 70 35 0 155 224 212 281 4.75e-15 74.7
MS.gene85464.t1 MTR_2g105060 43.077 65 37 0 152 216 167 231 5.44e-15 73.9
MS.gene85464.t1 MTR_2g088000 42.683 82 35 1 133 214 340 409 5.59e-15 74.7
MS.gene85464.t1 MTR_8g087000 49.296 71 27 1 174 244 35 96 6.62e-15 71.6
MS.gene85464.t1 MTR_2g033820 48.333 60 30 1 155 214 204 262 1.01e-14 73.6
MS.gene85464.t1 MTR_7g079010 39.583 96 47 3 125 212 106 198 1.87e-14 70.9
MS.gene85464.t1 MTR_3g009470 44.304 79 42 2 142 219 482 559 2.45e-14 73.2
MS.gene85464.t1 MTR_3g009470 50.000 62 29 2 153 214 279 338 8.35e-12 65.5
MS.gene85464.t1 MTR_3g095040 46.032 63 33 1 152 214 116 177 3.02e-14 70.1
MS.gene85464.t1 MTR_6g086555 48.148 81 37 4 142 218 193 272 3.75e-14 72.0
MS.gene85464.t1 MTR_4g130900 48.485 66 33 1 152 217 357 421 4.06e-14 72.0
MS.gene85464.t1 MTR_8g092010 47.619 63 32 1 152 214 106 167 5.57e-14 68.9
MS.gene85464.t1 MTR_5g097490 43.373 83 44 2 152 234 250 329 5.88e-14 71.2
MS.gene85464.t1 MTR_4g013260 49.206 63 31 1 152 214 334 395 7.21e-14 71.2
MS.gene85464.t1 MTR_4g013260 45.000 60 32 1 155 214 185 243 6.68e-11 62.4
MS.gene85464.t1 MTR_7g080000 35.088 114 71 3 104 217 384 494 7.71e-14 71.6
MS.gene85464.t1 MTR_7g080000 49.180 61 29 2 155 215 235 293 6.63e-12 65.9
MS.gene85464.t1 MTR_1g013760 47.368 57 30 0 155 211 141 197 8.16e-14 70.1
MS.gene85464.t1 MTR_4g107970 41.975 81 44 1 134 214 238 315 8.90e-14 71.2
MS.gene85464.t1 MTR_1g015140 49.180 61 30 1 152 212 100 159 9.54e-14 67.8
MS.gene85464.t1 MTR_4g107970 41.975 81 44 1 134 214 161 238 1.08e-13 70.9
MS.gene85464.t1 MTR_7g071120 40.909 88 50 2 144 230 313 399 1.15e-13 70.9
MS.gene85464.t1 MTR_7g071120 46.774 62 31 2 153 214 165 224 9.86e-11 62.0
MS.gene85464.t1 MTR_8g027860 38.462 104 50 3 114 209 96 193 1.54e-13 70.1
MS.gene85464.t1 MTR_4g122530 44.262 61 33 1 155 215 209 268 2.13e-13 69.7
MS.gene85464.t1 MTR_3g106060 40.789 76 38 1 143 211 120 195 3.43e-13 68.6
MS.gene85464.t1 MTR_3g031220 43.590 78 42 2 152 229 363 438 1.23e-12 67.8
MS.gene85464.t1 MTR_1g078260 50.794 63 29 2 150 211 243 304 1.36e-12 67.8
MS.gene85464.t1 MTR_7g028415 43.548 62 34 1 151 212 90 150 1.51e-12 64.7
MS.gene85464.t1 MTR_7g028710 43.548 62 34 1 151 212 90 150 1.51e-12 64.7
MS.gene85464.t1 MTR_4g047580 42.667 75 43 0 150 224 277 351 1.63e-12 67.4
MS.gene85464.t1 MTR_5g074400 45.588 68 36 1 152 219 418 484 2.31e-12 67.0
MS.gene85464.t1 MTR_3g095080 45.455 77 38 3 154 230 168 240 4.72e-12 64.7
MS.gene85464.t1 MTR_3g095080 45.455 77 38 3 154 230 144 216 4.98e-12 64.3
MS.gene85464.t1 MTR_8g092140 44.928 69 36 2 143 211 150 216 6.14e-12 64.3
MS.gene85464.t1 MTR_8g007270 40.206 97 53 3 126 219 124 218 6.77e-12 63.9
MS.gene85464.t1 MTR_3g009470 50.000 62 29 2 153 214 279 338 7.42e-12 65.5
MS.gene85464.t1 MTR_1g013790 40.625 64 38 0 152 215 99 162 1.08e-11 63.9
MS.gene85464.t1 MTR_5g067680 35.294 119 60 5 107 209 142 259 2.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85464.t1 AT4G01250 50.000 266 81 9 1 252 1 228 2.52e-68 214
MS.gene85464.t1 AT5G52830 37.540 309 128 6 3 269 4 289 2.49e-44 153
MS.gene85464.t1 AT4G23550 43.023 258 107 9 3 249 8 236 2.49e-42 147
MS.gene85464.t1 AT2G34830 68.367 98 21 1 135 222 186 283 2.52e-41 147
MS.gene85464.t1 AT2G34830 68.367 98 21 1 135 222 195 292 3.67e-41 147
MS.gene85464.t1 AT1G30650 62.617 107 27 2 129 222 179 285 9.28e-40 143
MS.gene85464.t1 AT5G45050 57.798 109 45 1 115 222 1112 1220 2.00e-36 137
MS.gene85464.t1 AT5G45050 57.798 109 45 1 115 222 1140 1248 2.03e-36 137
MS.gene85464.t1 AT5G45050 57.798 109 45 1 115 222 1001 1109 2.58e-36 137
MS.gene85464.t1 AT3G58710 51.695 118 38 2 129 227 34 151 3.50e-35 127
MS.gene85464.t1 AT1G29280 58.252 103 27 2 135 226 44 141 7.03e-34 124
MS.gene85464.t1 AT3G58710 53.571 112 33 2 135 227 41 152 7.15e-34 124
MS.gene85464.t1 AT2G30590 58.333 84 30 1 134 212 288 371 1.14e-27 110
MS.gene85464.t1 AT4G24240 59.036 83 29 1 134 211 256 338 4.95e-27 107
MS.gene85464.t1 AT4G31550 56.098 82 31 1 135 211 221 302 1.21e-26 106
MS.gene85464.t1 AT4G31550 56.098 82 31 1 135 211 222 303 3.89e-26 104
MS.gene85464.t1 AT2G24570 56.098 82 31 1 135 211 219 300 2.27e-25 102
MS.gene85464.t1 AT2G23320 55.422 83 32 2 134 211 215 297 2.38e-25 102
MS.gene85464.t1 AT5G45260 50.000 98 44 3 132 225 1185 1281 6.78e-25 104
MS.gene85464.t1 AT3G04670 55.422 83 32 1 134 211 237 319 8.24e-24 98.6
MS.gene85464.t1 AT5G28650 55.422 83 32 1 134 211 237 319 1.12e-23 98.2
MS.gene85464.t1 AT2G37260 53.846 91 35 4 127 211 236 325 2.09e-19 86.7
MS.gene85464.t1 AT2G37260 53.846 91 35 4 127 211 234 323 2.10e-19 86.7
MS.gene85464.t1 AT5G46350 52.778 72 31 2 155 224 184 254 2.94e-19 86.3
MS.gene85464.t1 AT2G37260 53.846 91 35 4 127 211 316 405 3.08e-19 87.0
MS.gene85464.t1 AT4G18170 48.780 82 40 2 135 216 154 233 6.13e-19 85.1
MS.gene85464.t1 AT2G04880 37.795 127 67 4 120 240 272 392 6.08e-18 83.6
MS.gene85464.t1 AT2G04880 37.795 127 67 4 120 240 248 368 6.80e-18 83.2
MS.gene85464.t1 AT4G04450 50.685 73 36 0 152 224 196 268 7.01e-18 83.2
MS.gene85464.t1 AT1G29860 55.738 61 26 1 155 215 137 196 7.12e-18 81.6
MS.gene85464.t1 AT4G04450 50.685 73 36 0 152 224 290 362 1.02e-17 82.8
MS.gene85464.t1 AT1G13960 53.125 64 29 1 151 214 253 315 4.77e-17 80.1
MS.gene85464.t1 AT1G13960 43.939 66 35 2 149 214 71 134 2.27e-11 63.5
MS.gene85464.t1 AT4G22070 53.125 64 30 0 151 214 294 357 7.72e-17 80.5
MS.gene85464.t1 AT4G22070 53.125 64 30 0 151 214 294 357 7.72e-17 80.5
MS.gene85464.t1 AT4G22070 53.125 64 30 0 151 214 294 357 7.72e-17 80.5
MS.gene85464.t1 AT4G22070 53.125 64 30 0 151 214 294 357 7.72e-17 80.5
MS.gene85464.t1 AT1G13960 53.968 63 28 1 152 214 407 468 7.78e-17 80.1
MS.gene85464.t1 AT1G13960 43.939 66 35 2 149 214 224 287 2.73e-11 63.9
MS.gene85464.t1 AT1G68150 46.053 76 41 0 154 229 235 310 8.02e-17 79.7
MS.gene85464.t1 AT1G62300 53.968 63 29 0 152 214 310 372 1.01e-16 80.1
MS.gene85464.t1 AT5G49520 43.590 78 42 2 137 214 205 280 1.05e-16 79.3
MS.gene85464.t1 AT2G03340 50.000 68 33 1 152 219 413 479 1.71e-16 79.3
MS.gene85464.t1 AT2G03340 40.845 71 40 2 153 223 249 317 8.74e-11 62.4
MS.gene85464.t1 AT5G26170 53.968 63 27 2 149 211 109 169 3.31e-16 74.7
MS.gene85464.t1 AT3G62340 46.988 83 38 2 137 214 96 177 3.78e-16 76.6
MS.gene85464.t1 AT2G21900 33.065 124 70 3 92 215 59 169 5.77e-16 74.7
MS.gene85464.t1 AT4G01720 54.098 61 28 0 154 214 239 299 1.28e-15 76.6
MS.gene85464.t1 AT2G25000 48.333 60 31 0 155 214 104 163 1.42e-15 74.3
MS.gene85464.t1 AT2G25000 48.333 60 31 0 155 214 104 163 1.42e-15 74.3
MS.gene85464.t1 AT4G26640 36.434 129 66 4 106 219 278 405 1.75e-15 76.3
MS.gene85464.t1 AT4G26640 36.434 129 66 4 106 219 318 445 1.82e-15 76.3
MS.gene85464.t1 AT2G25000 48.333 60 31 0 155 214 126 185 2.46e-15 73.9
MS.gene85464.t1 AT4G26640 36.434 129 66 4 106 219 246 373 2.50e-15 75.9
MS.gene85464.t1 AT5G15130 41.111 90 50 1 135 224 211 297 2.88e-15 75.9
MS.gene85464.t1 AT5G15130 41.111 90 50 1 135 224 169 255 3.02e-15 75.5
MS.gene85464.t1 AT2G25000 48.333 60 31 0 155 214 147 206 3.04e-15 73.9
MS.gene85464.t1 AT4G26640 46.835 79 36 2 146 219 192 269 3.22e-15 75.1
MS.gene85464.t1 AT4G26640 46.835 79 36 2 146 219 192 269 3.22e-15 75.1
MS.gene85464.t1 AT4G26640 46.835 79 36 2 146 219 192 269 3.22e-15 75.1
MS.gene85464.t1 AT4G26640 46.835 79 36 2 146 219 192 269 3.22e-15 75.1
MS.gene85464.t1 AT2G46400 35.359 181 91 8 101 260 46 221 4.71e-15 73.9
MS.gene85464.t1 AT1G18860 43.750 80 42 1 135 214 223 299 5.00e-15 75.1
MS.gene85464.t1 AT1G80840 40.845 71 42 0 155 225 147 217 5.84e-15 73.6
MS.gene85464.t1 AT4G11070 44.792 96 41 3 131 214 80 175 6.03e-15 73.6
MS.gene85464.t1 AT5G07100 49.231 65 32 1 151 215 138 201 6.19e-15 72.4
MS.gene85464.t1 AT5G07100 45.161 62 33 1 153 214 23 83 2.75e-11 62.0
MS.gene85464.t1 AT5G07100 49.231 65 32 1 151 215 138 201 6.19e-15 72.4
MS.gene85464.t1 AT5G07100 45.161 62 33 1 153 214 23 83 2.75e-11 62.0
MS.gene85464.t1 AT5G07100 49.231 65 32 1 151 215 138 201 6.19e-15 72.4
MS.gene85464.t1 AT5G07100 45.161 62 33 1 153 214 23 83 2.75e-11 62.0
MS.gene85464.t1 AT5G07100 49.231 65 32 1 151 215 138 201 6.19e-15 72.4
MS.gene85464.t1 AT5G07100 45.161 62 33 1 153 214 23 83 2.75e-11 62.0
MS.gene85464.t1 AT4G11070 44.792 96 41 3 131 214 112 207 6.25e-15 73.6
MS.gene85464.t1 AT1G69310 44.000 75 40 2 137 211 131 203 6.69e-15 73.2
MS.gene85464.t1 AT1G69310 44.000 75 40 2 137 211 131 203 6.69e-15 73.2
MS.gene85464.t1 AT1G69310 44.000 75 40 2 137 211 131 203 6.69e-15 73.2
MS.gene85464.t1 AT2G47260 39.286 84 49 2 131 214 152 233 8.42e-15 73.6
MS.gene85464.t1 AT5G07100 49.231 65 32 1 151 215 231 294 1.76e-14 72.4
MS.gene85464.t1 AT5G07100 45.161 62 33 1 153 214 116 176 5.28e-11 62.4
MS.gene85464.t1 AT3G01080 47.297 74 37 2 142 214 331 403 1.79e-14 73.2
MS.gene85464.t1 AT3G01080 41.429 70 39 2 153 222 204 271 4.96e-11 62.8
MS.gene85464.t1 AT3G01080 50.000 64 31 1 151 214 303 365 1.94e-14 73.2
MS.gene85464.t1 AT3G01080 41.429 70 39 2 153 222 166 233 5.00e-11 62.8
MS.gene85464.t1 AT4G30935 46.970 66 34 1 152 217 329 393 3.82e-14 72.4
MS.gene85464.t1 AT1G69810 45.833 72 38 1 154 224 203 274 3.82e-14 72.0
MS.gene85464.t1 AT1G69810 45.833 72 38 1 154 224 145 216 4.59e-14 71.2
MS.gene85464.t1 AT2G38470 44.595 74 40 1 152 225 360 432 5.26e-14 72.0
MS.gene85464.t1 AT4G31800 45.000 60 33 0 155 214 112 171 5.77e-14 70.1
MS.gene85464.t1 AT4G31800 45.000 60 33 0 155 214 177 236 6.80e-14 70.9
MS.gene85464.t1 AT4G26440 31.126 151 82 5 89 219 288 436 1.40e-13 70.9
MS.gene85464.t1 AT4G26440 48.387 62 30 2 153 214 177 236 1.87e-11 64.3
MS.gene85464.t1 AT2G40740 42.708 96 43 4 132 215 144 239 1.48e-13 69.7
MS.gene85464.t1 AT5G56270 46.970 66 34 1 152 217 485 549 1.51e-13 70.9
MS.gene85464.t1 AT2G40740 42.708 96 43 4 132 215 153 248 2.14e-13 69.3
MS.gene85464.t1 AT1G64000 40.260 77 45 1 150 226 110 185 2.30e-13 67.4
MS.gene85464.t1 AT4G23810 49.206 63 30 1 149 209 153 215 3.08e-13 68.9
MS.gene85464.t1 AT2G30250 44.000 75 36 2 146 215 315 388 5.55e-13 68.6
MS.gene85464.t1 AT4G39410 39.394 99 55 3 136 230 203 300 5.67e-13 68.2
MS.gene85464.t1 AT2G44745 42.045 88 46 3 127 211 116 201 7.64e-13 66.6
MS.gene85464.t1 AT5G41570 40.260 77 45 1 150 226 94 169 7.77e-13 65.9
MS.gene85464.t1 AT3G01970 35.366 82 52 1 151 232 62 142 7.93e-13 65.1
MS.gene85464.t1 AT5G13080 43.548 62 34 1 151 212 64 124 1.01e-12 64.7
MS.gene85464.t1 AT1G55600 44.262 61 33 1 154 214 307 366 1.28e-12 67.8
MS.gene85464.t1 AT3G56400 34.021 97 57 3 127 217 94 189 4.42e-12 65.5
MS.gene85464.t1 AT2G46130 37.931 87 53 1 126 212 2 87 8.29e-12 61.2
MS.gene85464.t1 AT5G43290 44.872 78 40 2 151 228 111 185 8.75e-12 64.3
MS.gene85464.t1 AT2G40750 48.438 64 30 2 149 209 146 209 9.69e-12 64.7
MS.gene85464.t1 AT5G64810 43.548 62 34 1 152 213 108 168 1.17e-11 62.8
MS.gene85464.t1 AT5G24110 44.444 63 33 1 149 209 108 170 2.12e-11 63.5
MS.gene85464.t1 AT3G01080 41.429 70 39 2 153 222 204 271 4.62e-11 62.8

Find 53 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTGTGTTTGAGCTAATT+TGG 0.166085 7.2:+26482540 None:intergenic
TCAGCTTGAGGTGGTGTTAA+TGG 0.224988 7.2:+26481948 None:intergenic
CGCATGAAGGTTCAGGTTGC+AGG 0.251865 7.2:+26482758 None:intergenic
GTAGAGAAAATGGAACATTT+TGG 0.279823 7.2:-26481550 MS.gene85464:intron
AGAGTCTCTCTTCAGATATA+TGG 0.305175 7.2:-26482270 MS.gene85464:CDS
TCTTCACCTCCTGAGGTTGT+AGG 0.351765 7.2:+26481894 None:intergenic
CAAGAAAGTGACAAAATTTG+AGG 0.365124 7.2:+26482703 None:intergenic
GATCTCCATGCGGTGGTTAG+AGG 0.374060 7.2:-26482841 MS.gene85464:CDS
TCTTGTGTTTGAGCTAATTT+GGG 0.375553 7.2:+26482541 None:intergenic
ATATGGGCATGGAGAAAATA+TGG 0.375958 7.2:-26482253 MS.gene85464:CDS
CTTAACCTATGGAAGAAGAT+TGG 0.391859 7.2:-26482864 None:intergenic
GAGTGGCCGCATGAAGGTTC+AGG 0.397916 7.2:+26482751 None:intergenic
TATAGATGTAGCAGTTCAAA+AGG 0.420572 7.2:-26482101 MS.gene85464:CDS
ATGGAGCTTCTAGCTTCAAA+AGG 0.422310 7.2:+26482670 None:intergenic
TTAACCTATGGAAGAAGATT+GGG 0.454990 7.2:-26482863 None:intergenic
TCTTTGTTGGTTTCAGCTTG+AGG 0.464539 7.2:+26481936 None:intergenic
TATGTTACTATGAACATTGT+TGG 0.470318 7.2:+26482038 None:intergenic
GAGTCTCTCTTCAGATATAT+GGG 0.478312 7.2:-26482269 MS.gene85464:CDS
AAGTTCATGCAACTCTTCAA+TGG 0.483711 7.2:+26482651 None:intergenic
AACCTCTTCTTCACCTCCTG+AGG 0.488504 7.2:+26481887 None:intergenic
CCCTCTTCTCCTACAACCTC+AGG 0.495834 7.2:-26481903 MS.gene85464:CDS
AGCTAATTTGGGTGAAGCAG+AGG 0.511551 7.2:+26482552 None:intergenic
AGAAACAGAGGATGTAGGTG+TGG 0.524059 7.2:+26482798 None:intergenic
GAAGAAGAAACAGAGGATGT+AGG 0.525651 7.2:+26482793 None:intergenic
TGTGATGATCTTGAAAAGAA+AGG 0.526105 7.2:+26482622 None:intergenic
GGAGGAATCTTTGCTAACAA+AGG 0.526424 7.2:-26481529 MS.gene85464:CDS
AGATCCCAATCTTCTTCCAT+AGG 0.533241 7.2:+26482859 None:intergenic
GCATGAAGGTTCAGGTTGCA+GGG 0.533367 7.2:+26482759 None:intergenic
TCTGAAGAGAGACTCTCAAC+TGG 0.540075 7.2:+26482277 None:intergenic
CCTGAGGTTGTAGGAGAAGA+GGG 0.546404 7.2:+26481903 None:intergenic
GGAGAAGTTTGCAAAGAAAG+AGG 0.551853 7.2:+26482598 None:intergenic
TCCTGAGGTTGTAGGAGAAG+AGG 0.567164 7.2:+26481902 None:intergenic
TGGAGCTTCTAGCTTCAAAA+GGG 0.573200 7.2:+26482671 None:intergenic
AACAGAGGAAGAAGAAACAG+AGG 0.577059 7.2:+26482786 None:intergenic
TAAGAGAATGAAGAAAACAA+AGG 0.578001 7.2:+26482577 None:intergenic
TGTAGGTGTGGTAGTTGAAG+TGG 0.593764 7.2:+26482810 None:intergenic
TAAAAGGGTCACCATATCCA+AGG 0.597269 7.2:-26482219 MS.gene85464:intron
ATAGAAGAGTGGCCGCATGA+AGG 0.603520 7.2:+26482745 None:intergenic
TCTCTTCAGATATATGGGCA+TGG 0.605027 7.2:-26482264 MS.gene85464:CDS
TTGTTGGTTTCAGCTTGAGG+TGG 0.614005 7.2:+26481939 None:intergenic
AGGTGTGGTAGTTGAAGTGG+TGG 0.622473 7.2:+26482813 None:intergenic
ATAGATGTAGCAGTTCAAAA+GGG 0.629154 7.2:-26482100 MS.gene85464:CDS
AACCTCAGGAGGTGAAGAAG+AGG 0.630119 7.2:-26481889 MS.gene85464:intron
AGCAACCTCTAACCACCGCA+TGG 0.645537 7.2:+26482836 None:intergenic
GGTTGGTGAGAGAACCACCT+TGG 0.648538 7.2:+26482485 None:intergenic
CATGAAGGTTCAGGTTGCAG+GGG 0.661321 7.2:+26482760 None:intergenic
ACTCTCTAGCTGGTTCAACA+CGG 0.669942 7.2:-26481977 MS.gene85464:CDS
CTGCAACCTGAACCTTCATG+CGG 0.685394 7.2:-26482757 MS.gene85464:CDS
AGATTGGGATCTCCATGCGG+TGG 0.697339 7.2:-26482848 MS.gene85464:CDS
TCTTCTCCTACAACCTCAGG+AGG 0.702219 7.2:-26481900 MS.gene85464:CDS
AGAAGTAAACATTCACACCA+AGG 0.709360 7.2:-26482502 MS.gene85464:CDS
AGTAAACATTCACACCAAGG+TGG 0.736776 7.2:-26482499 MS.gene85464:CDS
AGAAGATTGGGATCTCCATG+CGG 0.744459 7.2:-26482851 MS.gene85464:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATTTAATAACAAAA+AGG + chr7.2:26482008-26482027 None:intergenic 10.0%
!!! AAAAAATTGAATTTTTACCT+TGG + chr7.2:26482178-26482197 None:intergenic 15.0%
!!! ATTTTGTTTTTGTGATTTAT+AGG - chr7.2:26482247-26482266 MS.gene85464:CDS 15.0%
!!! TTGCTTTATTTTTTCTTTAT+AGG - chr7.2:26482047-26482066 MS.gene85464:CDS 15.0%
!!! TTTTGTTTTTGTGATTTATA+GGG - chr7.2:26482248-26482267 MS.gene85464:CDS 15.0%
!!! TTTGTTTTTGTGATTTATAG+GGG - chr7.2:26482249-26482268 MS.gene85464:CDS 20.0%
! ATGGTCAAAAACCTATAAAA+GGG - chr7.2:26482143-26482162 MS.gene85464:intron 25.0%
! ATTGTAATAGCAGAAGAAAA+TGG + chr7.2:26482660-26482679 None:intergenic 25.0%
! TAAGAGAATGAAGAAAACAA+AGG + chr7.2:26481803-26481822 None:intergenic 25.0%
! TATGGTCAAAAACCTATAAA+AGG - chr7.2:26482142-26482161 MS.gene85464:intron 25.0%
! TATGTTACTATGAACATTGT+TGG + chr7.2:26482342-26482361 None:intergenic 25.0%
! TGCTATTACAATTCCTAATT+GGG - chr7.2:26482668-26482687 MS.gene85464:CDS 25.0%
! TTTGAGAGTTTAGATGAATT+TGG - chr7.2:26482624-26482643 MS.gene85464:CDS 25.0%
!! AAGGCTTGATTTTTATTACA+TGG + chr7.2:26481989-26482008 None:intergenic 25.0%
!! AGGCTTGATTTTTATTACAT+GGG + chr7.2:26481988-26482007 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG + chr7.2:26481917-26481936 None:intergenic 25.0%
!! CATTTTCTCTACAAACAAAA+AGG + chr7.2:26482819-26482838 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG + chr7.2:26482172-26482191 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG + chr7.2:26481916-26481935 None:intergenic 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+TGG - chr7.2:26482817-26482836 MS.gene85464:CDS 25.0%
AGAAAAGGAAGATTCTTTGA+TGG - chr7.2:26482545-26482564 MS.gene85464:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG - chr7.2:26482277-26482296 MS.gene85464:CDS 30.0%
CAAGAAAGTGACAAAATTTG+AGG + chr7.2:26481677-26481696 None:intergenic 30.0%
CTGCTATTACAATTCCTAAT+TGG - chr7.2:26482667-26482686 MS.gene85464:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG - chr7.2:26482276-26482295 MS.gene85464:CDS 30.0%
TATTACAATTCCTAATTGGG+TGG - chr7.2:26482671-26482690 MS.gene85464:CDS 30.0%
TCTTGTGTTTGAGCTAATTT+GGG + chr7.2:26481839-26481858 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG + chr7.2:26481758-26481777 None:intergenic 30.0%
! GTAGAGAAAATGGAACATTT+TGG - chr7.2:26482827-26482846 MS.gene85464:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG - chr7.2:26482773-26482792 MS.gene85464:CDS 30.0%
AAGTTCATGCAACTCTTCAA+TGG + chr7.2:26481729-26481748 None:intergenic 35.0%
AGAAGTAAACATTCACACCA+AGG - chr7.2:26481875-26481894 MS.gene85464:intron 35.0%
AGAGTCTCTCTTCAGATATA+TGG - chr7.2:26482107-26482126 MS.gene85464:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG - chr7.2:26482124-26482143 MS.gene85464:intron 35.0%
CACTGCTAAAAATAGAAGAG+TGG + chr7.2:26481646-26481665 None:intergenic 35.0%
GAGTCTCTCTTCAGATATAT+GGG - chr7.2:26482108-26482127 MS.gene85464:CDS 35.0%
GATGAAGAAGGAGATGAATT+TGG - chr7.2:26482570-26482589 MS.gene85464:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG - chr7.2:26482530-26482549 MS.gene85464:CDS 35.0%
GTCTTGTGTTTGAGCTAATT+TGG + chr7.2:26481840-26481859 None:intergenic 35.0%
! GAGAAAATGGAACATTTTGG+AGG - chr7.2:26482830-26482849 MS.gene85464:CDS 35.0%
! TCTTTGATGGATGATGAAGA+AGG - chr7.2:26482558-26482577 MS.gene85464:CDS 35.0%
AACAGAGGAAGAAGAAACAG+AGG + chr7.2:26481594-26481613 None:intergenic 40.0%
ACACACAAAAACTCTCTAGC+TGG - chr7.2:26482390-26482409 MS.gene85464:intron 40.0%
AGTAAACATTCACACCAAGG+TGG - chr7.2:26481878-26481897 MS.gene85464:intron 40.0%
CCAACCCAAGATCAAAAAGA+AGG - chr7.2:26481909-26481928 MS.gene85464:CDS 40.0%
GAAGAAGAAACAGAGGATGT+AGG + chr7.2:26481587-26481606 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG - chr7.2:26482501-26482520 MS.gene85464:CDS 40.0%
GGAGAAGTTTGCAAAGAAAG+AGG + chr7.2:26481782-26481801 None:intergenic 40.0%
GGAGGAATCTTTGCTAACAA+AGG - chr7.2:26482848-26482867 MS.gene85464:CDS 40.0%
TAAAAGGGTCACCATATCCA+AGG - chr7.2:26482158-26482177 MS.gene85464:intron 40.0%
TCTCTTCAGATATATGGGCA+TGG - chr7.2:26482113-26482132 MS.gene85464:intron 40.0%
! AGTTTTTGTGTGTAGGAGCA+GGG + chr7.2:26482383-26482402 None:intergenic 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG + chr7.2:26481912-26481931 None:intergenic 40.0%
! GCTAGAGAGTTTTTGTGTGT+AGG + chr7.2:26482390-26482409 None:intergenic 40.0%
! GGATATGGTGACCCTTTTAT+AGG + chr7.2:26482157-26482176 None:intergenic 40.0%
!! ATGGAGCTTCTAGCTTCAAA+AGG + chr7.2:26481710-26481729 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG + chr7.2:26482457-26482476 None:intergenic 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG + chr7.2:26482444-26482463 None:intergenic 40.0%
!! TGGAGCTTCTAGCTTCAAAA+GGG + chr7.2:26481709-26481728 None:intergenic 40.0%
AGAAACAGAGGATGTAGGTG+TGG + chr7.2:26481582-26481601 None:intergenic 45.0%
AGAAGATTGGGATCTCCATG+CGG - chr7.2:26481526-26481545 MS.gene85464:CDS 45.0%
AGCTAATTTGGGTGAAGCAG+AGG + chr7.2:26481828-26481847 None:intergenic 45.0%
GCACTATTAGCCACCCAATT+AGG + chr7.2:26482684-26482703 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG + chr7.2:26482103-26482122 None:intergenic 45.0%
TGTAGGTGTGGTAGTTGAAG+TGG + chr7.2:26481570-26481589 None:intergenic 45.0%
! ACTCTCTAGCTGGTTCAACA+CGG - chr7.2:26482400-26482419 MS.gene85464:intron 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG + chr7.2:26482384-26482403 None:intergenic 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG + chr7.2:26482432-26482451 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG + chr7.2:26482468-26482487 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG + chr7.2:26482441-26482460 None:intergenic 45.0%
AACCTCAGGAGGTGAAGAAG+AGG - chr7.2:26482488-26482507 MS.gene85464:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG + chr7.2:26482493-26482512 None:intergenic 50.0%
AGGTGTGGTAGTTGAAGTGG+TGG + chr7.2:26481567-26481586 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG + chr7.2:26481609-26481628 None:intergenic 50.0%
ATAGAAGAGTGGCCGCATGA+AGG + chr7.2:26481635-26481654 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG + chr7.2:26482477-26482496 None:intergenic 50.0%
CTGCAACCTGAACCTTCATG+CGG - chr7.2:26481620-26481639 MS.gene85464:intron 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG + chr7.2:26482478-26482497 None:intergenic 50.0%
TCTTCACCTCCTGAGGTTGT+AGG + chr7.2:26482486-26482505 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG - chr7.2:26482477-26482496 MS.gene85464:CDS 50.0%
!! CATGAAGGTTCAGGTTGCAG+GGG + chr7.2:26481620-26481639 None:intergenic 50.0%
!! GCATGAAGGTTCAGGTTGCA+GGG + chr7.2:26481621-26481640 None:intergenic 50.0%
AGATTGGGATCTCCATGCGG+TGG - chr7.2:26481529-26481548 MS.gene85464:CDS 55.0%
AGCAACCTCTAACCACCGCA+TGG + chr7.2:26481544-26481563 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG - chr7.2:26482474-26482493 MS.gene85464:CDS 55.0%
GATCTCCATGCGGTGGTTAG+AGG - chr7.2:26481536-26481555 MS.gene85464:CDS 55.0%
!! CGCATGAAGGTTCAGGTTGC+AGG + chr7.2:26481622-26481641 None:intergenic 55.0%
!! GGTTGGTGAGAGAACCACCT+TGG + chr7.2:26481895-26481914 None:intergenic 55.0%
GAGTGGCCGCATGAAGGTTC+AGG + chr7.2:26481629-26481648 None:intergenic 60.0%
GCTGCTGCTACAGCTGCTGG+TGG - chr7.2:26482705-26482724 MS.gene85464:CDS 65.0%
GCTGCTGCTGCTACAGCTGC+TGG - chr7.2:26482702-26482721 MS.gene85464:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 26481521 26482878 26481521 ID=MS.gene85464
chr7.2 mRNA 26481521 26482878 26481521 ID=MS.gene85464.t1;Parent=MS.gene85464
chr7.2 exon 26482469 26482878 26482469 ID=MS.gene85464.t1.exon1;Parent=MS.gene85464.t1
chr7.2 CDS 26482469 26482878 26482469 ID=cds.MS.gene85464.t1;Parent=MS.gene85464.t1
chr7.2 exon 26482220 26482330 26482220 ID=MS.gene85464.t1.exon2;Parent=MS.gene85464.t1
chr7.2 CDS 26482220 26482330 26482220 ID=cds.MS.gene85464.t1;Parent=MS.gene85464.t1
chr7.2 exon 26481890 26482130 26481890 ID=MS.gene85464.t1.exon3;Parent=MS.gene85464.t1
chr7.2 CDS 26481890 26482130 26481890 ID=cds.MS.gene85464.t1;Parent=MS.gene85464.t1
chr7.2 exon 26481521 26481568 26481521 ID=MS.gene85464.t1.exon4;Parent=MS.gene85464.t1
chr7.2 CDS 26481521 26481568 26481521 ID=cds.MS.gene85464.t1;Parent=MS.gene85464.t1
Gene Sequence

>MS.gene85464

ATGGAAGAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCACTTCAACTACCACACCTACATCCTCTGTTTCTTCTTCCTCTGTTTTTCCCCTGCAACCTGAACCTTCATGCGGCCACTCTTCTATTTTTAGCAGTGAACAAAAACCTCAAATTTTGTCACTTTCTTGTTCTACACACCCTTTTGAAGCTAGAAGCTCCATTGAAGAGTTGCATGAACTTTGCAAGCCTTTCTTTTCAAGATCATCACAGCCTCTTTCTTTGCAAACTTCTCCTTTGTTTTCTTCATTCTCTTATTCCTCTGCTTCACCCAAATTAGCTCAAACACAAGACAAACAACAACTGCAAAGAAGTAAACATTCACACCAAGGTGGTTCTCTCACCAACCCAAGATCAAAAAGAAGGTAAATATTAAATTTTTAGTTTGATTTTGATTTAAACATAAGATTTTGAATTGACCCATGTAATAAAAATCAAGCCTTTTTGTTATTAAATATTTTGTATAATTTTTATTAAATTCTTGCTTTATTTTTTCTTTATAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGATATATGGGCATGGAGAAAATATGGTCAAAAACCTATAAAAGGGTCACCATATCCAAGGTAAAAATTCAATTTTTTTCACTTCAACAAAAGAAAAAATTGAAGTAATTTTATTAAATTTTTTCTTATTTTGTTTTTGTGATTTATAGGGGCTATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGAACAGATCCAACAATGTTCATAGTAACATATACATGTGAACACAATCACCCTGCTCCTACACACAAAAACTCTCTAGCTGGTTCAACACGGCAGAAGCCATTAACACCACCTCAAGCTGAAACCAACAAAGATCCTACAAAACCCTCTTCTCCTACAACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAAAGTAGAGAAGAAAAGGAAGATTCTTTGATGGATGATGAAGAAGGAGATGAATTTGGTTTATCTGATGTTGTTTTAAGTGATGATTTCTTTGAGAGTTTAGATGAATTTGGTTTCACAGATCCATTTTCTTCTGCTATTACAATTCCTAATTGGGTGGCTAATAGTGCTGCTGCTGCTACAGCTGCTGGTGGTAGCTGATTTGTTTTGTTGCAGTGATGATAAGTTACTGTTTCTTTGCTTTTTCATTGAAGAGAATAGGAACTTTTTGTTTTTGTTACTCCTTTTTGTTTGTAGAGAAAATGGAACATTTTGGAGGAATCTTTGCTAACAAAGGAAGTGTAG
Protein sequence

>MS.gene85464.t1

MEEDWDLHAVVRGCSTTSTTTPTSSVSSSSVFPLQPEPSCGHSSIFSSEQKPQILSLSCSTHPFEARSSIEELHELCKPFFSRSSQPLSLQTSPLFSSFSYSSASPKLAQTQDKQQLQRSKHSHQGGSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTCEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKDPTKPSSPTTSGGEEERKWNILEESLLTKEV