Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85505.t1 | XP_003598636.1 | 94.4 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 1.30E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85505.t1 | Q6IP65 | 51.7 | 261 | 126 | 0 | 43 | 303 | 28 | 288 | 1.4e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85505.t1 | Q2HW81 | 94.4 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 9.3e-155 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85505.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85505.t1 | MTR_3g018640 | 94.352 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 0.0 | 578 |
| MS.gene85505.t1 | MTR_8g106940 | 57.632 | 321 | 136 | 0 | 1 | 321 | 1 | 321 | 1.70e-125 | 362 |
| MS.gene85505.t1 | MTR_6g065170 | 57.944 | 321 | 135 | 0 | 1 | 321 | 1 | 321 | 1.89e-123 | 357 |
| MS.gene85505.t1 | MTR_5g093460 | 60.465 | 301 | 118 | 1 | 5 | 305 | 134 | 433 | 6.33e-123 | 360 |
| MS.gene85505.t1 | MTR_5g093460 | 68.939 | 132 | 40 | 1 | 34 | 165 | 1 | 131 | 7.81e-55 | 185 |
| MS.gene85505.t1 | MTR_1g056470 | 60.700 | 257 | 97 | 1 | 1 | 257 | 1 | 253 | 6.73e-113 | 328 |
| MS.gene85505.t1 | MTR_3g053170 | 58.781 | 279 | 115 | 0 | 38 | 316 | 26 | 304 | 1.68e-110 | 323 |
| MS.gene85505.t1 | MTR_1g043540 | 58.475 | 118 | 48 | 1 | 142 | 259 | 9 | 125 | 3.08e-36 | 127 |
| MS.gene85505.t1 | MTR_1g043500 | 49.206 | 63 | 31 | 1 | 196 | 257 | 3 | 65 | 7.23e-13 | 63.5 |
| MS.gene85505.t1 | MTR_1g043520 | 36.522 | 115 | 36 | 2 | 168 | 282 | 29 | 106 | 1.33e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85505.t1 | AT3G20800 | 56.890 | 283 | 122 | 0 | 28 | 310 | 29 | 311 | 2.46e-110 | 323 |
| MS.gene85505.t1 | AT5G12980 | 53.091 | 275 | 128 | 1 | 31 | 304 | 28 | 302 | 4.70e-99 | 295 |
| MS.gene85505.t1 | AT2G32550 | 35.102 | 245 | 143 | 5 | 53 | 285 | 67 | 307 | 5.47e-35 | 130 |
| MS.gene85505.t1 | AT2G32550 | 35.470 | 234 | 135 | 5 | 64 | 285 | 39 | 268 | 8.15e-35 | 128 |
| MS.gene85505.t1 | AT2G32550 | 35.185 | 216 | 124 | 5 | 82 | 285 | 2 | 213 | 6.70e-30 | 114 |
Find 55 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3.4:-12195157 | MS.gene85505:CDS |
| ATAGAAACCTATGGCTTCTT+TGG | 0.275780 | 3.4:+12192687 | None:intergenic |
| CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3.4:-12192324 | MS.gene85505:intron |
| AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3.4:+12194057 | None:intergenic |
| AGTCATTGGTGGCTCGATTA+AGG | 0.314473 | 3.4:-12193591 | MS.gene85505:intron |
| GAAGCAGGTAGAGGAGGAAT+TGG | 0.316775 | 3.4:-12191673 | MS.gene85505:CDS |
| GTTGCTACTCTTGGAGTCAT+TGG | 0.359762 | 3.4:-12193605 | MS.gene85505:CDS |
| AGGAATGGATATAAATATAA+AGG | 0.360461 | 3.4:+12193668 | None:intergenic |
| TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3.4:+12192180 | None:intergenic |
| CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3.4:+12195146 | None:intergenic |
| TATGATCAGTGGTGCTAGAT+TGG | 0.401740 | 3.4:+12196686 | None:intergenic |
| AATTTGAGGGTTGCTACTCT+TGG | 0.407238 | 3.4:-12193614 | MS.gene85505:CDS |
| TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3.4:-12191714 | MS.gene85505:CDS |
| TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3.4:-12195177 | MS.gene85505:intron |
| TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3.4:-12192194 | MS.gene85505:CDS |
| TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3.4:+12196745 | None:intergenic |
| GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3.4:+12194325 | None:intergenic |
| GGAGGAATTGGTGATATTGT+AGG | 0.448159 | 3.4:-12191661 | MS.gene85505:CDS |
| TAACACACTTTGAGAATTTG+AGG | 0.453125 | 3.4:-12193628 | MS.gene85505:CDS |
| ATGATCAGTGGTGCTAGATT+GGG | 0.463771 | 3.4:+12196687 | None:intergenic |
| AATCTAGCACCACTGATCAT+AGG | 0.464495 | 3.4:-12196684 | MS.gene85505:CDS |
| AAAATTATATTAGACGATGA+TGG | 0.467412 | 3.4:-12192472 | MS.gene85505:CDS |
| CACCCTCACCTCGTTTGTTG+AGG | 0.472935 | 3.4:-12192366 | MS.gene85505:CDS |
| GCTACTCTTGGAGTCATTGG+TGG | 0.479008 | 3.4:-12193602 | MS.gene85505:CDS |
| TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3.4:-12196641 | MS.gene85505:CDS |
| ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3.4:-12195170 | MS.gene85505:CDS |
| AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3.4:+12194340 | None:intergenic |
| AACCGAGTTCCTTTAGAAGC+AGG | 0.491153 | 3.4:-12191688 | MS.gene85505:CDS |
| CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3.4:-12195146 | MS.gene85505:CDS |
| CCTCCTCTACCTGCTTCTAA+AGG | 0.503277 | 3.4:+12191679 | None:intergenic |
| GTTCCTTTAGAAGCAGGTAG+AGG | 0.520910 | 3.4:-12191682 | MS.gene85505:CDS |
| TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3.4:+12195169 | None:intergenic |
| TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3.4:-12194068 | MS.gene85505:CDS |
| TGCTTGTCTAACATGCAAAA+CGG | 0.538800 | 3.4:-12192640 | MS.gene85505:CDS |
| CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3.4:-12191715 | MS.gene85505:CDS |
| AACACACTTTGAGAATTTGA+GGG | 0.544051 | 3.4:-12193627 | MS.gene85505:CDS |
| GAGGAATTGGTGATATTGTA+GGG | 0.544338 | 3.4:-12191660 | MS.gene85505:CDS |
| CCTTTAGAAGCAGGTAGAGG+AGG | 0.553169 | 3.4:-12191679 | MS.gene85505:CDS |
| AGCCTCAACAAACGAGGTGA+GGG | 0.559488 | 3.4:+12192364 | None:intergenic |
| ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3.4:-12194051 | MS.gene85505:intron |
| AAGCCTCAACAAACGAGGTG+AGG | 0.569309 | 3.4:+12192363 | None:intergenic |
| ACTTGAGAGATAGAAACCTA+TGG | 0.574907 | 3.4:+12192678 | None:intergenic |
| TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3.4:-12196605 | MS.gene85505:intron |
| GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3.4:+12194058 | None:intergenic |
| CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3.4:+12194313 | None:intergenic |
| GTTGACACCAAAGAAGCCAT+AGG | 0.615742 | 3.4:-12192694 | MS.gene85505:CDS |
| TAGCACCACTGATCATAGGA+TGG | 0.627844 | 3.4:-12196680 | MS.gene85505:CDS |
| CTCAACAAACGAGGTGAGGG+TGG | 0.629401 | 3.4:+12192367 | None:intergenic |
| TACCTGCTTCTAAAGGAACT+CGG | 0.631809 | 3.4:+12191686 | None:intergenic |
| GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3.4:+12196644 | None:intergenic |
| ATCAAAAGCCTCAACAAACG+AGG | 0.660997 | 3.4:+12192358 | None:intergenic |
| GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3.4:+12194312 | None:intergenic |
| GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3.4:+12196675 | None:intergenic |
| TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3.4:+12194328 | None:intergenic |
| GTTGTTACATGAGAATGTTG+GGG | 0.746517 | 3.4:-12191713 | MS.gene85505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATATTTATTTATTTA+AGG | - | chr3.4:12193948-12193967 | MS.gene85505:intron | 0.0% |
| !! | AATACTCTATAATAATAAAT+TGG | + | chr3.4:12195831-12195850 | None:intergenic | 10.0% |
| !! | AATTATAAAAAATATCACAA+CGG | + | chr3.4:12191994-12192013 | None:intergenic | 10.0% |
| !! | ATAATAAATTATATCATATC+AGG | + | chr3.4:12196318-12196337 | None:intergenic | 10.0% |
| !! | ATTAGTTAATAATAAATCAA+TGG | + | chr3.4:12196452-12196471 | None:intergenic | 10.0% |
| !! | ATTATATGAAAATTGATATT+AGG | - | chr3.4:12195337-12195356 | MS.gene85505:intron | 10.0% |
| !! | TAGAATAAAAAATTGATAAA+TGG | + | chr3.4:12192782-12192801 | None:intergenic | 10.0% |
| !!! | ATATAATATTATTTTCTAGT+TGG | - | chr3.4:12193323-12193342 | MS.gene85505:intron | 10.0% |
| !!! | ATTATAATAATTTTGTTTTG+TGG | - | chr3.4:12195666-12195685 | MS.gene85505:intron | 10.0% |
| !!! | TTAAATATTATTTTAGCATA+TGG | - | chr3.4:12194157-12194176 | MS.gene85505:intron | 10.0% |
| !!! | TTTTTATAATTGAATTGAAA+GGG | - | chr3.4:12192003-12192022 | MS.gene85505:intron | 10.0% |
| !!! | TTTTTTATAATTGAATTGAA+AGG | - | chr3.4:12192002-12192021 | MS.gene85505:intron | 10.0% |
| !! | AAAATCACACTATTAAATTT+CGG | + | chr3.4:12192592-12192611 | None:intergenic | 15.0% |
| !! | AAAATTGATATTAGGTATTT+GGG | - | chr3.4:12195345-12195364 | MS.gene85505:intron | 15.0% |
| !! | ATTAAAAAACAAAAGTTAGA+AGG | + | chr3.4:12194842-12194861 | None:intergenic | 15.0% |
| !! | ATTATCACAATATCAAATTT+CGG | + | chr3.4:12192449-12192468 | None:intergenic | 15.0% |
| !! | CCAAAAAAAAAAAAACTTTA+TGG | - | chr3.4:12195054-12195073 | MS.gene85505:intron | 15.0% |
| !! | GACAATTAATTTATTATAAC+TGG | + | chr3.4:12195186-12195205 | None:intergenic | 15.0% |
| !!! | AAGAATCTTTTCTTATATAT+AGG | - | chr3.4:12195492-12195511 | MS.gene85505:intron | 15.0% |
| !!! | AAGAATCTTTTCTTATATAT+AGG | + | chr3.4:12195511-12195492 | None:intergenic | 15.0% |
| !!! | AATAGTGTGATTTTTTTTAA+TGG | - | chr3.4:12192598-12192617 | MS.gene85505:intron | 15.0% |
| !!! | AATTTTTAAGGACAATTATA+AGG | + | chr3.4:12195145-12195164 | None:intergenic | 15.0% |
| !!! | ATAATAATTTGAAAGTGTTT+TGG | - | chr3.4:12194555-12194574 | MS.gene85505:intron | 15.0% |
| !!! | CAATGTTAGTAAAATTTTTA+AGG | + | chr3.4:12195157-12195176 | None:intergenic | 15.0% |
| !!! | CATATATGTTTGTTTTATTT+TGG | - | chr3.4:12193115-12193134 | MS.gene85505:intron | 15.0% |
| !!! | CCATAAAGTTTTTTTTTTTT+TGG | + | chr3.4:12195057-12195076 | None:intergenic | 15.0% |
| !!! | CTTAAAAATTTTACTAACAT+TGG | - | chr3.4:12195155-12195174 | MS.gene85505:CDS | 15.0% |
| !!! | GAACTTTTATACTAAAATTT+CGG | - | chr3.4:12193137-12193156 | MS.gene85505:intron | 15.0% |
| !!! | TACAATGATATCTAATTTTA+GGG | + | chr3.4:12195239-12195258 | None:intergenic | 15.0% |
| !!! | TATTTTACAATGGATTATAT+AGG | - | chr3.4:12194937-12194956 | MS.gene85505:intron | 15.0% |
| !!! | TGTGAAAATATATTTTACAA+TGG | - | chr3.4:12194927-12194946 | MS.gene85505:intron | 15.0% |
| !!! | TTAGAAGATATATATTTTAG+CGG | - | chr3.4:12195093-12195112 | MS.gene85505:intron | 15.0% |
| !! | AGGAATGGATATAAATATAA+AGG | + | chr3.4:12194734-12194753 | None:intergenic | 20.0% |
| !! | ATTGAATTCTCTCTTTATAA+AGG | + | chr3.4:12196589-12196608 | None:intergenic | 20.0% |
| !! | CTGCATATAATAAGAAAAAA+AGG | + | chr3.4:12194703-12194722 | None:intergenic | 20.0% |
| !! | GAAAATTCAAAGATGTTATT+AGG | + | chr3.4:12191972-12191991 | None:intergenic | 20.0% |
| !! | GAAAATTGATATTAGGTATT+TGG | - | chr3.4:12195344-12195363 | MS.gene85505:intron | 20.0% |
| !! | GAAACACAAAATCATAAATT+TGG | + | chr3.4:12193743-12193762 | None:intergenic | 20.0% |
| !! | TATGGAGATATATAACTAAT+TGG | - | chr3.4:12194505-12194524 | MS.gene85505:intron | 20.0% |
| !! | TGAAATGATGATTGTTATAA+AGG | + | chr3.4:12193560-12193579 | None:intergenic | 20.0% |
| !!! | AAATTGATAAATGGATTTCT+AGG | + | chr3.4:12192773-12192792 | None:intergenic | 20.0% |
| !!! | AAATTTTTTCAATGGTATTC+CGG | + | chr3.4:12192375-12192394 | None:intergenic | 20.0% |
| !!! | AATCTTGATTTTACCATAAA+TGG | + | chr3.4:12192667-12192686 | None:intergenic | 20.0% |
| !!! | AATGTTTTTTTTATAGTGTG+TGG | - | chr3.4:12194311-12194330 | MS.gene85505:CDS | 20.0% |
| !!! | ATCATTTTTTGTTGAAAACT+TGG | - | chr3.4:12192334-12192353 | MS.gene85505:CDS | 20.0% |
| !!! | ATTCTTTTGTGAAAATACTA+TGG | - | chr3.4:12194487-12194506 | MS.gene85505:intron | 20.0% |
| !!! | ATTGATTTTCATGTATTTTG+TGG | + | chr3.4:12194198-12194217 | None:intergenic | 20.0% |
| !!! | ATTGTCTGTAAAAGTTTTAA+TGG | - | chr3.4:12195200-12195219 | MS.gene85505:intron | 20.0% |
| !!! | CTACAATGATATCTAATTTT+AGG | + | chr3.4:12195240-12195259 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTTGGAAGA+AGG | + | chr3.4:12195050-12195069 | None:intergenic | 20.0% |
| !!! | TACACAGTAAATTTTTTCAA+TGG | + | chr3.4:12192526-12192545 | None:intergenic | 20.0% |
| ! | AACTTCTTTCATCTTAAAAC+AGG | - | chr3.4:12196169-12196188 | MS.gene85505:intron | 25.0% |
| ! | AATGATCACTCTAAACTTTA+TGG | - | chr3.4:12195017-12195036 | MS.gene85505:intron | 25.0% |
| ! | ACGAAAAAAATTGATGAGAT+TGG | + | chr3.4:12196241-12196260 | None:intergenic | 25.0% |
| ! | ACTTAGAAAATATATGGTGA+TGG | - | chr3.4:12193780-12193799 | MS.gene85505:intron | 25.0% |
| ! | ACTTCTTTCATCTTAAAACA+GGG | - | chr3.4:12196170-12196189 | MS.gene85505:intron | 25.0% |
| ! | ATATTACAAGACATGCTATT+AGG | - | chr3.4:12196368-12196387 | MS.gene85505:intron | 25.0% |
| ! | ATTATAAATGTTGCAATCTG+TGG | + | chr3.4:12195903-12195922 | None:intergenic | 25.0% |
| ! | CTAGATATTGTTTCAATTTC+AGG | - | chr3.4:12196635-12196654 | MS.gene85505:CDS | 25.0% |
| ! | GATATACAACTTTCATTAGT+AGG | + | chr3.4:12195879-12195898 | None:intergenic | 25.0% |
| ! | TATTACAAGACATGCTATTA+GGG | - | chr3.4:12196369-12196388 | MS.gene85505:intron | 25.0% |
| ! | TTAGAAGACTTAATCACAAT+TGG | - | chr3.4:12192890-12192909 | MS.gene85505:intron | 25.0% |
| ! | TTGTGATTAAGTCTTCTAAA+TGG | + | chr3.4:12192889-12192908 | None:intergenic | 25.0% |
| ! | TTTGTTGAAAACTTGGTATT+CGG | - | chr3.4:12192341-12192360 | MS.gene85505:CDS | 25.0% |
| !! | AATTTGGTGAAAGATATACA+TGG | + | chr3.4:12193727-12193746 | None:intergenic | 25.0% |
| !! | CATTTATGGTATTTTCAAAG+TGG | - | chr3.4:12196522-12196541 | MS.gene85505:intron | 25.0% |
| !! | CTTTACTTTGACTTTAAATG+AGG | + | chr3.4:12192407-12192426 | None:intergenic | 25.0% |
| !! | TCTTTTCTTATATATAGGAC+CGG | - | chr3.4:12195497-12195516 | MS.gene85505:intron | 25.0% |
| !!! | AACATTAGTTCTATCATTGT+CGG | + | chr3.4:12194458-12194477 | None:intergenic | 25.0% |
| !!! | AGTTGTGCTATTTTTTTTTC+AGG | - | chr3.4:12194019-12194038 | MS.gene85505:intron | 25.0% |
| !!! | CTTTTCAATTTTAATGCATC+TGG | - | chr3.4:12192311-12192330 | MS.gene85505:intron | 25.0% |
| !!! | TACACGGTAAATTTTTTCAA+TGG | + | chr3.4:12192383-12192402 | None:intergenic | 25.0% |
| !!! | TACTATTGCAGTATTTTTAC+AGG | - | chr3.4:12193276-12193295 | MS.gene85505:intron | 25.0% |
| !!! | TCATTTTTAACGTCTTTCAT+GGG | - | chr3.4:12191846-12191865 | MS.gene85505:intron | 25.0% |
| !!! | TTAGTTTTGTGACACATTTA+TGG | - | chr3.4:12196508-12196527 | MS.gene85505:intron | 25.0% |
| !!! | TTCATTTTTAACGTCTTTCA+TGG | - | chr3.4:12191845-12191864 | MS.gene85505:intron | 25.0% |
| AGATAGATATGTAAGAACCT+TGG | + | chr3.4:12191814-12191833 | None:intergenic | 30.0% | |
| AGGACAATTATAAGGAATGT+TGG | + | chr3.4:12195137-12195156 | None:intergenic | 30.0% | |
| AGGGAGACTTAGAAAATATA+TGG | - | chr3.4:12193774-12193793 | MS.gene85505:intron | 30.0% | |
| ATCACAATATCAAATTTCGG+TGG | + | chr3.4:12192446-12192465 | None:intergenic | 30.0% | |
| ATCACACTATTAAATTTCGG+TGG | + | chr3.4:12192589-12192608 | None:intergenic | 30.0% | |
| ATGAAACACACAATGGTATT+GGG | - | chr3.4:12193498-12193517 | MS.gene85505:intron | 30.0% | |
| ATGTTATTAGGTCTAGCAAA+AGG | + | chr3.4:12191960-12191979 | None:intergenic | 30.0% | |
| ATTCATAAGAGTGACACTAA+TGG | + | chr3.4:12193927-12193946 | None:intergenic | 30.0% | |
| CAACTTTCATTAGTAGGTAT+TGG | + | chr3.4:12195873-12195892 | None:intergenic | 30.0% | |
| CCAACAGTATTCCATAATAA+AGG | + | chr3.4:12193256-12193275 | None:intergenic | 30.0% | |
| CCTTTATTATGGAATACTGT+TGG | - | chr3.4:12193253-12193272 | MS.gene85505:intron | 30.0% | |
| CTAATTGCTTGGTTATTCAA+AGG | - | chr3.4:12192192-12192211 | MS.gene85505:CDS | 30.0% | |
| CTTTGAATAACCAAGCAATT+AGG | + | chr3.4:12192194-12192213 | None:intergenic | 30.0% | |
| GAGAGAGATTCATAATCAAA+CGG | + | chr3.4:12193583-12193602 | None:intergenic | 30.0% | |
| GATTTGAACTTCTTTCTTAG+AGG | + | chr3.4:12193882-12193901 | None:intergenic | 30.0% | |
| GTATGATACACACATTCAAT+AGG | + | chr3.4:12196413-12196432 | None:intergenic | 30.0% | |
| GTATTTGATGAAACACACAA+TGG | - | chr3.4:12193491-12193510 | MS.gene85505:intron | 30.0% | |
| TAACAACTTATCTTCCAAAC+AGG | - | chr3.4:12196205-12196224 | MS.gene85505:intron | 30.0% | |
| TCAAAGTGGATACTAACTAT+AGG | - | chr3.4:12196536-12196555 | MS.gene85505:intron | 30.0% | |
| TGACACATTACAAATAAGCA+TGG | + | chr3.4:12195646-12195665 | None:intergenic | 30.0% | |
| TGATTTATGTGTGCTCTTAA+AGG | - | chr3.4:12192745-12192764 | MS.gene85505:intron | 30.0% | |
| TGTCACAAAACTAACTAAAG+AGG | + | chr3.4:12196502-12196521 | None:intergenic | 30.0% | |
| TGTTATTAGGTCTAGCAAAA+GGG | + | chr3.4:12191959-12191978 | None:intergenic | 30.0% | |
| TGTTGTTACATGAGAATGTT+GGG | - | chr3.4:12196685-12196704 | MS.gene85505:CDS | 30.0% | |
| TTCAACAGTTCTTAAGATCA+TGG | + | chr3.4:12196115-12196134 | None:intergenic | 30.0% | |
| TTCACAAGTAATCCAAATCT+TGG | - | chr3.4:12191870-12191889 | MS.gene85505:intron | 30.0% | |
| TTCACTGTTTAGTGTATCAT+GGG | - | chr3.4:12192216-12192235 | MS.gene85505:intron | 30.0% | |
| TTCTTATATATAGGTCCGAA+GGG | + | chr3.4:12195386-12195405 | None:intergenic | 30.0% | |
| TTGTGGTATTTGATATTCAC+AGG | - | chr3.4:12195683-12195702 | MS.gene85505:intron | 30.0% | |
| TTTCACTGTTTAGTGTATCA+TGG | - | chr3.4:12192215-12192234 | MS.gene85505:intron | 30.0% | |
| TTTCTTATATATAGGTCCGA+AGG | + | chr3.4:12195387-12195406 | None:intergenic | 30.0% | |
| ! | AACACACTTTGAGAATTTGA+GGG | - | chr3.4:12194772-12194791 | MS.gene85505:intron | 30.0% |
| ! | AACGTTTGAAACAAGAGAAA+AGG | + | chr3.4:12196142-12196161 | None:intergenic | 30.0% |
| ! | ACATCGTTTATAGCTTTTCT+TGG | - | chr3.4:12191681-12191700 | MS.gene85505:CDS | 30.0% |
| ! | CACAATTGGTTTAGATTCTA+AGG | - | chr3.4:12192904-12192923 | MS.gene85505:intron | 30.0% |
| ! | CTTTGCTTTGACTTTAAATG+AGG | + | chr3.4:12192550-12192569 | None:intergenic | 30.0% |
| ! | TAACACACTTTGAGAATTTG+AGG | - | chr3.4:12194771-12194790 | MS.gene85505:intron | 30.0% |
| ! | TGATATTGTGATAATGCATC+TGG | - | chr3.4:12192454-12192473 | MS.gene85505:CDS | 30.0% |
| ! | TTGTTCTGAATTTCAATCCA+AGG | - | chr3.4:12194403-12194422 | MS.gene85505:intron | 30.0% |
| !! | AGGTCTTTATTTAGTGCTTT+TGG | - | chr3.4:12192924-12192943 | MS.gene85505:intron | 30.0% |
| !! | ATTTAGTGCTTTTGGTTAAC+TGG | - | chr3.4:12192932-12192951 | MS.gene85505:intron | 30.0% |
| !! | CTTTCCCATTTTTGACATAA+TGG | + | chr3.4:12194638-12194657 | None:intergenic | 30.0% |
| !! | GTAGGTATTGGTAACAAAAA+TGG | + | chr3.4:12195861-12195880 | None:intergenic | 30.0% |
| !!! | GCTACAACAGAGAATTTTTT+TGG | - | chr3.4:12195966-12195985 | MS.gene85505:intron | 30.0% |
| !!! | TGAAAGTGTTTTGGATAAGA+GGG | - | chr3.4:12194564-12194583 | MS.gene85505:intron | 30.0% |
| !!! | TTAACTTGCTTGTCGTTTTA+AGG | + | chr3.4:12194754-12194773 | None:intergenic | 30.0% |
| !!! | TTGAAAGTGTTTTGGATAAG+AGG | - | chr3.4:12194563-12194582 | MS.gene85505:intron | 30.0% |
| AAAACTTGGTATTCGGTCAA+AGG | - | chr3.4:12192348-12192367 | MS.gene85505:CDS | 35.0% | |
| AAGAGTTGGATTACATGTGT+GGG | + | chr3.4:12192826-12192845 | None:intergenic | 35.0% | |
| ACAAGGATCTCATTTCTCAA+TGG | - | chr3.4:12194348-12194367 | MS.gene85505:CDS | 35.0% | |
| ACAAGTAATCCAAATCTTGG+AGG | - | chr3.4:12191873-12191892 | MS.gene85505:intron | 35.0% | |
| ACCAAGTTATTTGAGGAACT+TGG | - | chr3.4:12193229-12193248 | MS.gene85505:intron | 35.0% | |
| ACTTACAAATCTACTCCCTT+CGG | - | chr3.4:12195368-12195387 | MS.gene85505:intron | 35.0% | |
| ACTTGAGAGATAGAAACCTA+TGG | + | chr3.4:12195724-12195743 | None:intergenic | 35.0% | |
| AGAAATGAGATCCTTGTATC+AGG | + | chr3.4:12194345-12194364 | None:intergenic | 35.0% | |
| AGAACCTAGGTTCAATTCTT+GGG | + | chr3.4:12192129-12192148 | None:intergenic | 35.0% | |
| AGGAACTTGGACCTTTATTA+TGG | - | chr3.4:12193242-12193261 | MS.gene85505:intron | 35.0% | |
| AGGATGATCCAAAAACTATG+AGG | - | chr3.4:12196655-12196674 | MS.gene85505:CDS | 35.0% | |
| ATAGAAACCTATGGCTTCTT+TGG | + | chr3.4:12195715-12195734 | None:intergenic | 35.0% | |
| CAATTTATCGCAACCAAAAC+CGG | + | chr3.4:12194611-12194630 | None:intergenic | 35.0% | |
| CAGGCCATTATGTCAAAAAT+GGG | - | chr3.4:12194631-12194650 | MS.gene85505:intron | 35.0% | |
| CTGTTGTTACATGAGAATGT+TGG | - | chr3.4:12196684-12196703 | MS.gene85505:CDS | 35.0% | |
| CTTATCTCAAAATTGCAGGT+TGG | - | chr3.4:12196079-12196098 | MS.gene85505:intron | 35.0% | |
| GAAATGAGATCCTTGTATCA+GGG | + | chr3.4:12194344-12194363 | None:intergenic | 35.0% | |
| GAATTTGGATTCTCTATGAC+CGG | - | chr3.4:12194589-12194608 | MS.gene85505:intron | 35.0% | |
| GACGACATCTAATCCATTTA+TGG | - | chr3.4:12192651-12192670 | MS.gene85505:CDS | 35.0% | |
| GATGAAACACACAATGGTAT+TGG | - | chr3.4:12193497-12193516 | MS.gene85505:intron | 35.0% | |
| GATTGCTGAGTTCAATAACA+AGG | + | chr3.4:12191758-12191777 | None:intergenic | 35.0% | |
| GTTGTTACATGAGAATGTTG+GGG | - | chr3.4:12196686-12196705 | MS.gene85505:CDS | 35.0% | |
| TCCAAGTTCCTCAAATAACT+TGG | + | chr3.4:12193233-12193252 | None:intergenic | 35.0% | |
| TGACTTTAAATGAGGCTACA+CGG | + | chr3.4:12192399-12192418 | None:intergenic | 35.0% | |
| TGATCCAAAAACTATGAGGT+TGG | - | chr3.4:12196659-12196678 | MS.gene85505:CDS | 35.0% | |
| TGCTTGTCTAACATGCAAAA+CGG | - | chr3.4:12195759-12195778 | MS.gene85505:intron | 35.0% | |
| TGTTATTGAACTCAGCAATC+CGG | - | chr3.4:12191758-12191777 | MS.gene85505:intron | 35.0% | |
| TTAGTTCATCTACATCAGGA+AGG | - | chr3.4:12195539-12195558 | MS.gene85505:intron | 35.0% | |
| TTCTTATATATAGGACCGGA+GGG | - | chr3.4:12195501-12195520 | MS.gene85505:intron | 35.0% | |
| TTGGATAAGAGGGATGAATT+TGG | - | chr3.4:12194574-12194593 | MS.gene85505:intron | 35.0% | |
| TTGTGCATGTATCTTACTTG+TGG | - | chr3.4:12193446-12193465 | MS.gene85505:intron | 35.0% | |
| TTTCTTATATATAGGACCGG+AGG | - | chr3.4:12195500-12195519 | MS.gene85505:intron | 35.0% | |
| ! | AGTACCAACCTCATAGTTTT+TGG | + | chr3.4:12196666-12196685 | None:intergenic | 35.0% |
| ! | CTCACATTTAGTTTAACGCT+TGG | + | chr3.4:12192859-12192878 | None:intergenic | 35.0% |
| ! | GAGGAATTGGTGATATTGTA+GGG | - | chr3.4:12196739-12196758 | MS.gene85505:CDS | 35.0% |
| ! | TCTCCAGCATAATTTGTCTT+TGG | - | chr3.4:12192146-12192165 | MS.gene85505:intron | 35.0% |
| ! | TGTGTTTCCAACTTTTACGA+GGG | - | chr3.4:12193755-12193774 | MS.gene85505:intron | 35.0% |
| ! | TTGTGTTTCCAACTTTTACG+AGG | - | chr3.4:12193754-12193773 | MS.gene85505:intron | 35.0% |
| !! | AGGATTAGTTCATCTACATC+AGG | - | chr3.4:12195535-12195554 | MS.gene85505:intron | 35.0% |
| !! | CAACTTGTTACATACAACCT+TGG | + | chr3.4:12194423-12194442 | None:intergenic | 35.0% |
| !! | TTTTGGTTGCGATAAATTGC+AGG | - | chr3.4:12194612-12194631 | MS.gene85505:intron | 35.0% |
| !!! | AGAGCATTTTCTCTAAGATC+CGG | + | chr3.4:12191780-12191799 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTGAACATGATGT+TGG | - | chr3.4:12195995-12196014 | MS.gene85505:intron | 35.0% |
| !!! | TTGCTTGTCGTTTTAAGGAA+TGG | + | chr3.4:12194749-12194768 | None:intergenic | 35.0% |
| AATCTAGCACCACTGATCAT+AGG | - | chr3.4:12191715-12191734 | MS.gene85505:CDS | 40.0% | |
| AATGAGACCTGGTAATTTGG+TGG | - | chr3.4:12192070-12192089 | MS.gene85505:intron | 40.0% | |
| AATTTGAGGGTTGCTACTCT+TGG | - | chr3.4:12194785-12194804 | MS.gene85505:intron | 40.0% | |
| ATCAAAAGCCTCAACAAACG+AGG | + | chr3.4:12196044-12196063 | None:intergenic | 40.0% | |
| ATGAGACCTGGTAATTTGGT+GGG | - | chr3.4:12192071-12192090 | MS.gene85505:intron | 40.0% | |
| CAAATTATGCTGGAGAACCT+AGG | + | chr3.4:12192142-12192161 | None:intergenic | 40.0% | |
| CAAGAGTTGGATTACATGTG+TGG | + | chr3.4:12192827-12192846 | None:intergenic | 40.0% | |
| CACACATGTAATCCAACTCT+TGG | - | chr3.4:12192825-12192844 | MS.gene85505:intron | 40.0% | |
| CCACCAAAGACAAATTATGC+TGG | + | chr3.4:12192152-12192171 | None:intergenic | 40.0% | |
| CTAGCAAAAGGGTTCAATGT+TGG | + | chr3.4:12191948-12191967 | None:intergenic | 40.0% | |
| CTCGCTTATCTCAAAATTGC+AGG | - | chr3.4:12196075-12196094 | MS.gene85505:intron | 40.0% | |
| GAGAACCTAGGTTCAATTCT+TGG | + | chr3.4:12192130-12192149 | None:intergenic | 40.0% | |
| GCAGGCCATTATGTCAAAAA+TGG | - | chr3.4:12194630-12194649 | MS.gene85505:intron | 40.0% | |
| GGAAATGAGACCTGGTAATT+TGG | - | chr3.4:12192067-12192086 | MS.gene85505:intron | 40.0% | |
| GGTGGGAGGTAAATAAAATC+TGG | - | chr3.4:12192088-12192107 | MS.gene85505:intron | 40.0% | |
| TAAGTCTCCCTCGTAAAAGT+TGG | + | chr3.4:12193765-12193784 | None:intergenic | 40.0% | |
| TACAAGACATGCTATTAGGG+TGG | - | chr3.4:12196372-12196391 | MS.gene85505:intron | 40.0% | |
| TGTTTACGCTTCACTTCTCA+GGG | - | chr3.4:12192045-12192064 | MS.gene85505:intron | 40.0% | |
| TTCACCCAAGAATTGAACCT+AGG | - | chr3.4:12192122-12192141 | MS.gene85505:intron | 40.0% | |
| TTCTTTGTTGAGAGCGATTG+AGG | + | chr3.4:12191657-12191676 | None:intergenic | 40.0% | |
| ! | AAAGGGTTCAATGTTGGTAG+AGG | + | chr3.4:12191942-12191961 | None:intergenic | 40.0% |
| ! | ATGATCAGTGGTGCTAGATT+GGG | + | chr3.4:12191715-12191734 | None:intergenic | 40.0% |
| ! | ATGCTATTAGGGTGGCTTTT+AGG | - | chr3.4:12196380-12196399 | MS.gene85505:intron | 40.0% |
| ! | CCAGCATAATTTGTCTTTGG+TGG | - | chr3.4:12192149-12192168 | MS.gene85505:intron | 40.0% |
| ! | GGAGGAATTGGTGATATTGT+AGG | - | chr3.4:12196738-12196757 | MS.gene85505:CDS | 40.0% |
| ! | TACCTGCTTCTAAAGGAACT+CGG | + | chr3.4:12196716-12196735 | None:intergenic | 40.0% |
| ! | TATGATCAGTGGTGCTAGAT+TGG | + | chr3.4:12191716-12191735 | None:intergenic | 40.0% |
| ! | TCAGAGCACCAAGTTATTTG+AGG | - | chr3.4:12193222-12193241 | MS.gene85505:intron | 40.0% |
| ACCAAGCAATTAGGCTCAAG+TGG | + | chr3.4:12192185-12192204 | None:intergenic | 45.0% | |
| ACCACTTGAGCCTAATTGCT+TGG | - | chr3.4:12192181-12192200 | MS.gene85505:CDS | 45.0% | |
| ATCACAACGCCTCCAAGATT+TGG | + | chr3.4:12191885-12191904 | None:intergenic | 45.0% | |
| GATTGTGAGGGAGAGAGATT+CGG | + | chr3.4:12194077-12194096 | None:intergenic | 45.0% | |
| GTAAGCCATCCTATGATCAG+TGG | + | chr3.4:12191727-12191746 | None:intergenic | 45.0% | |
| GTGTTTACGCTTCACTTCTC+AGG | - | chr3.4:12192044-12192063 | MS.gene85505:intron | 45.0% | |
| GTTGACACCAAAGAAGCCAT+AGG | - | chr3.4:12195705-12195724 | MS.gene85505:intron | 45.0% | |
| GTTGCTACTCTTGGAGTCAT+TGG | - | chr3.4:12194794-12194813 | MS.gene85505:intron | 45.0% | |
| GTTTACGCTTCACTTCTCAG+GGG | - | chr3.4:12192046-12192065 | MS.gene85505:intron | 45.0% | |
| TAGCACCACTGATCATAGGA+TGG | - | chr3.4:12191719-12191738 | MS.gene85505:CDS | 45.0% | |
| TCCTAACAAGTTACTCCCTC+CGG | + | chr3.4:12195519-12195538 | None:intergenic | 45.0% | |
| TTACCTCCCACCAAATTACC+AGG | + | chr3.4:12192080-12192099 | None:intergenic | 45.0% | |
| TTGGCAACTTCTCCAAGAGT+TGG | + | chr3.4:12192840-12192859 | None:intergenic | 45.0% | |
| TTGGCATCTTTGAGCCTGTT+TGG | + | chr3.4:12196222-12196241 | None:intergenic | 45.0% | |
| TTGGTATTCGGTCAAAGGAC+CGG | - | chr3.4:12192353-12192372 | MS.gene85505:CDS | 45.0% | |
| ! | AACCGAGTTCCTTTAGAAGC+AGG | - | chr3.4:12196711-12196730 | MS.gene85505:CDS | 45.0% |
| ! | AGTCATTGGTGGCTCGATTA+AGG | - | chr3.4:12194808-12194827 | MS.gene85505:intron | 45.0% |
| ! | GTTCCTTTAGAAGCAGGTAG+AGG | - | chr3.4:12196717-12196736 | MS.gene85505:CDS | 45.0% |
| !! | AGATTCGGTGGTGAAAGAGT+AGG | + | chr3.4:12194062-12194081 | None:intergenic | 45.0% |
| !! | CACACTCGAGTTGATTGTGA+GGG | + | chr3.4:12194089-12194108 | None:intergenic | 45.0% |
| !! | GGATTCTCTATGACCGGTTT+TGG | - | chr3.4:12194595-12194614 | MS.gene85505:intron | 45.0% |
| !!! | ATTTTTTTTTTTTTACATTA+AGG | + | chr3.4:12194261-12194280 | None:intergenic | 5.0% |
| AAGCCTCAACAAACGAGGTG+AGG | + | chr3.4:12196039-12196058 | None:intergenic | 50.0% | |
| AGCCTCAACAAACGAGGTGA+GGG | + | chr3.4:12196038-12196057 | None:intergenic | 50.0% | |
| CCTCCTCTACCTGCTTCTAA+AGG | + | chr3.4:12196723-12196742 | None:intergenic | 50.0% | |
| GAAGCAGGTAGAGGAGGAAT+TGG | - | chr3.4:12196726-12196745 | MS.gene85505:CDS | 50.0% | |
| GCTACTCTTGGAGTCATTGG+TGG | - | chr3.4:12194797-12194816 | MS.gene85505:intron | 50.0% | |
| TGCTCTCTATGTGCTCTCCA+AGG | - | chr3.4:12191794-12191813 | MS.gene85505:intron | 50.0% | |
| TGGCATCTCACCCTGATACA+AGG | - | chr3.4:12194331-12194350 | MS.gene85505:CDS | 50.0% | |
| TTCTCAGGGGAAATGAGACC+TGG | - | chr3.4:12192059-12192078 | MS.gene85505:intron | 50.0% | |
| ! | AGACCTGGTAATTTGGTGGG+AGG | - | chr3.4:12192074-12192093 | MS.gene85505:intron | 50.0% |
| ! | CCTTTAGAAGCAGGTAGAGG+AGG | - | chr3.4:12196720-12196739 | MS.gene85505:CDS | 50.0% |
| !! | ACCGGAGGGAGTAACTTGTT+AGG | - | chr3.4:12195515-12195534 | MS.gene85505:intron | 50.0% |
| !! | GCACACTCGAGTTGATTGTG+AGG | + | chr3.4:12194090-12194109 | None:intergenic | 50.0% |
| CTCAACAAACGAGGTGAGGG+TGG | + | chr3.4:12196035-12196054 | None:intergenic | 55.0% | |
| TGTGAGGGAGAGAGATTCGG+TGG | + | chr3.4:12194074-12194093 | None:intergenic | 55.0% | |
| ! | CACCCTCACCTCGTTTGTTG+AGG | - | chr3.4:12196033-12196052 | MS.gene85505:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12191639 | 12196782 | 12191639 | ID=MS.gene85505 |
| chr3.4 | mRNA | 12191639 | 12196782 | 12191639 | ID=MS.gene85505.t1;Parent=MS.gene85505 |
| chr3.4 | exon | 12196606 | 12196782 | 12196606 | ID=MS.gene85505.t1.exon1;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12196606 | 12196782 | 12196606 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12195124 | 12195195 | 12195124 | ID=MS.gene85505.t1.exon2;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12195124 | 12195195 | 12195124 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12194291 | 12194380 | 12194291 | ID=MS.gene85505.t1.exon3;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12194291 | 12194380 | 12194291 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12194052 | 12194094 | 12194052 | ID=MS.gene85505.t1.exon4;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12194052 | 12194094 | 12194052 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12193592 | 12193698 | 12193592 | ID=MS.gene85505.t1.exon5;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12193592 | 12193698 | 12193592 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12192621 | 12192716 | 12192621 | ID=MS.gene85505.t1.exon6;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12192621 | 12192716 | 12192621 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12192325 | 12192515 | 12192325 | ID=MS.gene85505.t1.exon7;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12192325 | 12192515 | 12192325 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12192161 | 12192230 | 12192161 | ID=MS.gene85505.t1.exon8;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12192161 | 12192230 | 12192161 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| chr3.4 | exon | 12191639 | 12191764 | 12191639 | ID=MS.gene85505.t1.exon9;Parent=MS.gene85505.t1 |
| chr3.4 | CDS | 12191639 | 12191764 | 12191639 | ID=cds.MS.gene85505.t1;Parent=MS.gene85505.t1 |
| Gene Sequence |
| Protein sequence |
