AlfalfaGEDB | MS.gene85508

M. sativa cultivar XinJiangDaYe / MS.gene85508

KEGG: K12606
GO: -
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85508.t1	XP_003598636.1	69	300	11	1	1	218	1	300	2.80E-98	368.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85508.t1	Q6IP65	34.2	266	93	1	43	226	28	293	2.6e-31	137.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85508.t1	Q2HW81	69.0	300	11	1	1	218	1	300	2.1e-98	368.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene85508.t1	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85508.t1	MTR_3g018640	92.920	113	8	0	1	113	1	113	1.35e-68	213
MS.gene85508.t1	MTR_3g018640	97.143	105	3	0	114	218	196	300	1.32e-67	211
MS.gene85508.t1	MTR_1g056470	64.602	113	36	1	1	113	1	109	2.52e-42	145
MS.gene85508.t1	MTR_1g056470	56.452	62	27	0	114	175	192	253	3.71e-17	78.6
MS.gene85508.t1	MTR_6g065170	63.717	113	41	0	1	113	1	113	2.37e-38	136
MS.gene85508.t1	MTR_6g065170	49.600	125	63	0	115	239	197	321	2.09e-30	115
MS.gene85508.t1	MTR_5g093460	64.815	108	37	1	5	112	134	240	2.56e-37	135
MS.gene85508.t1	MTR_5g093460	54.867	113	48	1	114	223	324	436	4.67e-31	119
MS.gene85508.t1	MTR_5g093460	75.000	80	19	1	34	113	1	79	2.70e-29	114
MS.gene85508.t1	MTR_8g106940	62.832	113	42	0	1	113	1	113	3.49e-37	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85508.t1	AT3G20800	48.760	121	61	1	114	234	197	316	2.66e-30	115
MS.gene85508.t1	AT3G20800	58.163	98	36	1	21	113	17	114	3.36e-29	112
MS.gene85508.t1	AT5G12980	56.627	83	36	0	31	113	28	110	9.86e-29	110
MS.gene85508.t1	AT5G12980	46.667	105	56	0	114	218	193	297	3.75e-21	90.5

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Find 41 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATATTAGACGATGA+TGG	0.457541	3.4:-12157676	MS.gene85508:CDS
AAGCCTCAACAAACGAGGTG+AGG	0.569309	3.4:+12157567	None:intergenic
AATCTAACACCACTGATAAT+AGG	0.324113	3.4:-12162242	MS.gene85508:CDS
ACCAAGTTATTTGAGGAACT+TGG	0.485648	3.4:-12161107	MS.gene85508:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	3.4:+12160365	None:intergenic
AGCCTCAACAAACGAGGTGA+GGG	0.559488	3.4:+12157568	None:intergenic
AGGAACTTGGACCTTTATTA+TGG	0.221177	3.4:-12161094	MS.gene85508:CDS
ATCAAAAGCCTCAACAAACG+AGG	0.660997	3.4:+12157562	None:intergenic
ATTATCAGTGGTGTTAGATT+GGG	0.456103	3.4:+12162245	None:intergenic
CAATGTTCTTGCACTACTTC+AGG	0.367374	3.4:-12160315	MS.gene85508:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAGTTTGAGAATTTGA+GGG	-	chr3.4:12159486-12159505	MS.gene85508:intron	30.0%
AATCAAGATTATTATCGCAC+AGG	-	chr3.4:12157726-12157745	MS.gene85508:intron	30.0%
AATCTAACACCACTGATAAT+AGG	-	chr3.4:12156897-12156916	MS.gene85508:CDS	30.0%
ACAAAACGAGACATATTTAC+AGG	+	chr3.4:12159596-12159615	None:intergenic	30.0%
ACAAGTAATACAAATCTTGG+AGG	-	chr3.4:12157055-12157074	MS.gene85508:intron	30.0%
ACATGATGATTGAACCTATT+CGG	-	chr3.4:12159722-12159741	MS.gene85508:intron	30.0%
AGAAATGAGACCTGATAATT+TGG	-	chr3.4:12157245-12157264	MS.gene85508:intron	30.0%
AGATAGATATGTAAGAACCT+TGG	+	chr3.4:12156996-12157015	None:intergenic	30.0%
AGCCAAAAACAAAAGTTAGA+AGG	+	chr3.4:12159556-12159575	None:intergenic	30.0%
AGGGAGACTTAGAAAATATA+TGG	-	chr3.4:12158463-12158482	MS.gene85508:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	12156821	12162340	12156821	ID=MS.gene85508
chr3.4	mRNA	12156821	12162340	12156821	ID=MS.gene85508.t1;Parent=MS.gene85508
chr3.4	exon	12162164	12162340	12162164	ID=MS.gene85508.t1.exon1;Parent=MS.gene85508.t1
chr3.4	CDS	12162164	12162340	12162164	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1
chr3.4	exon	12161061	12161132	12161061	ID=MS.gene85508.t1.exon2;Parent=MS.gene85508.t1
chr3.4	CDS	12161061	12161132	12161061	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1
chr3.4	exon	12160316	12160405	12160316	ID=MS.gene85508.t1.exon3;Parent=MS.gene85508.t1
chr3.4	CDS	12160316	12160405	12160316	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1
chr3.4	exon	12157529	12157719	12157529	ID=MS.gene85508.t1.exon4;Parent=MS.gene85508.t1
chr3.4	CDS	12157529	12157719	12157529	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1
chr3.4	exon	12157365	12157434	12157365	ID=MS.gene85508.t1.exon5;Parent=MS.gene85508.t1
chr3.4	CDS	12157365	12157434	12157365	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1
chr3.4	exon	12156821	12156946	12156821	ID=MS.gene85508.t1.exon6;Parent=MS.gene85508.t1
chr3.4	CDS	12156821	12156946	12156821	ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1

Gene Sequence

>MS.gene85508

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAACACCACTGATAATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCAGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGGTTCTTACATATCTATCTCTCATTTTTTGTTCATTTTTAATGTCTTTCATGGGATTCACAAGTAATACAAATCTTGGAGGCGTTGTGATACTCTTATACTGTGATTTAAATTGTCTGCGTGCTCCTCTACCAACATTAAACCCTTTTGCTAGACCTAATAACATCTTTGTTCTCATTTTTTTGATATTTTTTATAATTGAATTGAAAGGGTTCAATTTTTTTTTGTGTTTACGCTTCACTTCTTAGGAGAAATGAGACCTGATAATTTGGAGTTCGTCTGGTAGGTAAATAAAATCTTGCTCAGAATTAGTCCACCCAGAAATTGAACCCAGGTTCTCCAGAATAATTTGTCTTTGGTGGAGCACATTAACCACTAGAGCCTAATTGTTTCGTTATTGAAAGGGTTCACTGTTTAGTGTATCATGGGAGAAAACTTTAATTAGCTTTTTTTATATAAATAATCAATATTTTTCATGTATAATTTGAAGTTTTTTTTTTTTTTCAATTTTAATGCATCTGGATCAATTTTTGTTGAAAACTTGGTATTCGGTCATAGGACCGGAGTACCATTGAAAAAATTTAGAAGCTTGTGTGTAGCCTCATTTAAAGTCAAAGTAAAGTTTTGTATGAATTAATCCACCGAAATTTGATAGTGTGATTTTTTTTAATGGTTGAGATGATTGACTGAAATAATCATTGTTTGACGACATCTAATCCATTTATGGTAAAATCAAGATTATTATCGCACAGGTGTATCACAAGATTTTATCATCAAGCGTATCGATCTCAAACAAAATGATTTATGATGATTTATGTGTGCTCTTAAAGCTTCATTGTTTAGAATATCAGTGAGAAAAACAAAAACTTTCATTAGATTTTTTATATAAAATAATTACTTATATAATTTGAAGCATAGTTAATTACCATGTTTGTTTTATTTTGGAACTTTTATACTAAAATTTCGGTAGTATTCGTTAATGTTGCTGAAACTCATACAATTAATACATTATGTTGCATTTATTATATTTCAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGTATGTTACATGTGACTGTCATTACATATTATTTTCTAGCTGGATTTCTTTTCTTTAGCAACTCTAGCAAACATCTTCTTTTGTTCGTAATATTTTTTTAGAGCTTTACTATTTGTTACAAACAAGATTTAATGAAAAAAATATTGTGCATGTATCTTACTTGTGGATAAAAAATAGTTATTATATATTTGATGAAACACACAATGGTATTGGGTGAAAATTTAGTCATTGTCCTTTGTCGTATTACAATCCTTCAGAACAATCATCATTTCACCATTTTTAGATTATGAATCTATAATATATATTTTCCTACCATGTATATCTTTCTCCAAATTTATGTTTTTATGTTTCCAACTTTTACGAGGGAGACTTAGAAAATATATGGTGATGGTATGATTCAATTTAGATATTTTTTAAAATAATTTTTCAAGAGATGTTAGCTCAAGGATTTTTTTTAGGGAATATTAGCTCAACGATAAAAATTTAGTTTTTAAACCTCTAGGAAAGAAGTTCAAATCTCCTCAAACAACTGTAAAATGACCATTAGTGCGACTCTTATGAATATTTTTTTTTTTTGTTTAAGGTTCAAGAGTATTTTACAAAGATGTCTATTGATTTTCATACACTTATTGAGTTGTGCTGTTTTTTTTTTCAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGGTGAGACAAGTTTGTCGCTACAAGTTTTGAATATTATTTTAGCATATCGAAACTTTGATTATACCCCCAAAATACATGAAAATCAATCATGTTAAAATGAATACATATGTAAACATTATACTTTTTTCCTTAATGTAAAAAATATATATGAAACTAATTCTTCTAACACTCTTTTCTAATGTTTTTTTTTATAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGGTAATGTTAAGTTTATTATTAATCTTAATTATATTATTCTGAATTACAATCCAAGGTTGTATGTAACAAGTTGACAATATTTAATCTGACAATGATAGAACTAATGTTAGAATAATAGTTCTTTTGTGAAAATACTATGGAGATATATAACTATTTGGTGAGATTTGTTTGATGTCATATGAGTAATAATAGCGTGAAAAGTGTTTTGAATAAGAGGGATGAATTTGGATTCTCTATGACCAGCTTTTGGTTGCAATAACTTGCAGGCCATTATGTTAAAAATGGGAAAGTTATAGAAGAAAAAGTATTACTCTTTTTATTATTTATACATACCTTTTTTGTTATTATATGCAGCTAATATGCCTTTATATTTATATCCATTCCTTAAAACAACAAGCAAGTTAACACAGTTTGAGAATTTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTATTCCATCCTTCTAACTTTTGTTTTTGGCTAAAATATGGTTTTTGTCCCTGTAAATATGTCTCGTTTTGTTTTAGTCCCAGTAATTTTTTTTTTTTGTAGTTTTTGGTCCCTGCAAATATGTCTCGTTTTGGTTTTGGTCCTTGGTCCCACTTTTGTGATGATTTGCACACGTGGCACATGATGATTGAACCTATTCGGTAGAAAAATAGTCTCTGCAAAATATTTTGTTTTTGGAAATAGTGGAGGGACTATTTTCAAAAACAAAATATTTTGCAGGGACCAAAAACTACAAAAAGAAATATTACAGAGACTAAAACCAAAACGAGACATATTTGCAGGGACTAAAACCATATTTTAGCCTTTGTTTTTTAATGCAGCTGACTACAAATTTAATAAGTTTTTAAGAGAGTATAGTTACTAAAAATAATGTAAAAAACCTTGCAATGTGAAAATATATTTTGCAGTGAATTACATATGTCATTAAATTGAAGTTGTATAGTAATTATTTATTGATTATATTCACACAATAAACTAATTAAGGATTCTCTAAACTTTATGGCAATTATCTTTCTTCCAAAAAAAAAAAAAACTGTATGGCAAATATCTAGTTATTTTAAAAGATATATATTTTAGCGGTAATTAAACATGTTTTTACCAACATTCCTTATAACTGTCCTTAAAACTTTTACTAACATTGGATTCACCAGTTATAATAAATTAATTGTCGGTAAAAGTTTTAACGGTCACTTGTATTATCCCTAAAATTAGATATTATTGTAGTGAAATATTTTGTTTAATTTCAATCTTATCATACTCTTGTTATGTTTTCAACTACATCTATTTAAGTTGCACAACTAATTATATGAAAATTGATATTAGGTATTTGGGACTTACAAACCCAACTTGTTAGGATTAGTTCATCTACATCACGAAGGGAACTAAAATGTCACAACTATTTATTCTTTTTAAACGATTGCTTAAATTCACTTTATGTTTGATTTTTTATTACATGCATACCATGCTTATTTATTTCGTTTTGTGGTATTTGATATTCACAGGTTAACACCAAAGAAGCAGGGGCGGATCTGTGTACAACATGGTGTGGCTATTGCCACACCAGATTTTTCCCCAAGTAGTAGAGCCTAGAGGGAGTACAGTAATGACTATAGATGGAGTACAACACAACACACAGTAAAGAATCTCTGGTGTTCATAGGACAGAAACACCCATTGTTTTAGTGTTTCATAGTGAGTCAATTTTTCTGATCAATTATGCTTGTGTGTAAAAATCTACTTAAGAGATATGAACAATAGATGCAGCAAGAGAATCTACAAGAGATGTGAACAATTTTTCAATCTCAAGCTTCGATTTCTCTGTTTTATGGAGCAAGATGGAGCTAGAGACTCTTTTCTATTTTATGTGAACAAGAGATGGGTCATGGGTGAGTAATAATGATGAAGAAGAAGAAAAGAATGGACATGTGCGGCGGCTATGGGTTTCTGTACAGTAAAATACAACAAGGATTTTAACCCTATGGATTTTAATGGGCTTATTTACTACCTACTTACCAAAATGGATCTGGTTTTTACTTTTTTTTAACACTAATTACTTTTTTTTTTTGACAATTTTGCTAATTACCTATTTATTATTTCTATTGAAGTAAATTTTTGCCACACCTAAAAAAAATCTCAGATCCGCCCCTGAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAATTGTTAGTTTCTCTATTCTTATTGTTTTGCCAATTTATTATTATAGAGTATTTTGACATCCATTTTTGTTACCAATACCTGCTAATGAAAGTTGTATATCTCCACAGGTTGCAACATTTATAATTTTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAACAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTGCAGGTTGGTTGAGAAGTTACATGATCTTAAGAACTGTTGAATATGCCTTTTCTCTTGTTTCAAACGTTCTGATTAAACTTCTTTCATCTTAAAACAGGGCTAAAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGTAAGTACTTCTTGTGATATAAATATAAATTTGATTCAGAATTTGTTTGATACACCTAATATGATATAATTTAATATTATAAGATCTTCTATTTATCAACAAAATAAATATTACAAGACATGCTATTAGGGTGGCTTTTAGGTACACAACCTATTGAATGTGTGCATCATACACATATGTGAAGATGACCATTGATTTATTATTAACTAATTTAATGATTTGTATTTAAGAAGAGATACCTCTTTAGTAAGTTTTGTGACACATTTATGGTATTTTCAAAGTGGATACTAACTATAGGATTTTAGTCTCTTAAATACTCAGTTTCAGATCTAGAGAAATTTCAATTGCCTTTATAAAGAAAGAATTCAATTGTTAGTTTGTTTACATTTATTGATACTAGATATTGTTTCAATTTCAGGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGTACCGAGTTCCTTCAGAAGCAGGTAGAGGAGGAATTGATGATATTGTAGGGCCATCATTATCAAGAAAATGA

Protein sequence

>MS.gene85508.t1

MAHFTPQSLSTKNNASFIAFPGDSTQSNTTDNRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQVATFIILKIILDDDGLARVCATTENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNCRAKVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVYRVPSEAGRGGIDDIVGPSLSRK