Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85508.t1 | XP_003598636.1 | 69 | 300 | 11 | 1 | 1 | 218 | 1 | 300 | 2.80E-98 | 368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85508.t1 | Q6IP65 | 34.2 | 266 | 93 | 1 | 43 | 226 | 28 | 293 | 2.6e-31 | 137.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85508.t1 | Q2HW81 | 69.0 | 300 | 11 | 1 | 1 | 218 | 1 | 300 | 2.1e-98 | 368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene85508.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85508.t1 | MTR_3g018640 | 92.920 | 113 | 8 | 0 | 1 | 113 | 1 | 113 | 1.35e-68 | 213 |
| MS.gene85508.t1 | MTR_3g018640 | 97.143 | 105 | 3 | 0 | 114 | 218 | 196 | 300 | 1.32e-67 | 211 |
| MS.gene85508.t1 | MTR_1g056470 | 64.602 | 113 | 36 | 1 | 1 | 113 | 1 | 109 | 2.52e-42 | 145 |
| MS.gene85508.t1 | MTR_1g056470 | 56.452 | 62 | 27 | 0 | 114 | 175 | 192 | 253 | 3.71e-17 | 78.6 |
| MS.gene85508.t1 | MTR_6g065170 | 63.717 | 113 | 41 | 0 | 1 | 113 | 1 | 113 | 2.37e-38 | 136 |
| MS.gene85508.t1 | MTR_6g065170 | 49.600 | 125 | 63 | 0 | 115 | 239 | 197 | 321 | 2.09e-30 | 115 |
| MS.gene85508.t1 | MTR_5g093460 | 64.815 | 108 | 37 | 1 | 5 | 112 | 134 | 240 | 2.56e-37 | 135 |
| MS.gene85508.t1 | MTR_5g093460 | 54.867 | 113 | 48 | 1 | 114 | 223 | 324 | 436 | 4.67e-31 | 119 |
| MS.gene85508.t1 | MTR_5g093460 | 75.000 | 80 | 19 | 1 | 34 | 113 | 1 | 79 | 2.70e-29 | 114 |
| MS.gene85508.t1 | MTR_8g106940 | 62.832 | 113 | 42 | 0 | 1 | 113 | 1 | 113 | 3.49e-37 | 133 |
| MS.gene85508.t1 | MTR_8g106940 | 50.000 | 126 | 63 | 0 | 114 | 239 | 196 | 321 | 9.93e-34 | 124 |
| MS.gene85508.t1 | MTR_3g053170 | 69.737 | 76 | 23 | 0 | 38 | 113 | 26 | 101 | 2.05e-29 | 112 |
| MS.gene85508.t1 | MTR_3g053170 | 48.760 | 121 | 62 | 0 | 114 | 234 | 184 | 304 | 2.20e-28 | 109 |
| MS.gene85508.t1 | MTR_1g043540 | 55.385 | 65 | 29 | 0 | 113 | 177 | 61 | 125 | 3.81e-16 | 73.2 |
| MS.gene85508.t1 | MTR_1g043500 | 49.231 | 65 | 32 | 1 | 112 | 175 | 1 | 65 | 9.16e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85508.t1 | AT3G20800 | 48.760 | 121 | 61 | 1 | 114 | 234 | 197 | 316 | 2.66e-30 | 115 |
| MS.gene85508.t1 | AT3G20800 | 58.163 | 98 | 36 | 1 | 21 | 113 | 17 | 114 | 3.36e-29 | 112 |
| MS.gene85508.t1 | AT5G12980 | 56.627 | 83 | 36 | 0 | 31 | 113 | 28 | 110 | 9.86e-29 | 110 |
| MS.gene85508.t1 | AT5G12980 | 46.667 | 105 | 56 | 0 | 114 | 218 | 193 | 297 | 3.75e-21 | 90.5 |
Find 41 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3.4:-12161094 | MS.gene85508:CDS |
| CTCGCTTATCTCAAAATTGC+AGG | 0.298861 | 3.4:-12157528 | MS.gene85508:intron |
| AATCTAACACCACTGATAAT+AGG | 0.324113 | 3.4:-12162242 | MS.gene85508:CDS |
| CAATGTTCTTGCACTACTTC+AGG | 0.367374 | 3.4:-12160315 | MS.gene85508:intron |
| TATATTAGACGATGATGGTT+TGG | 0.376298 | 3.4:-12157671 | MS.gene85508:CDS |
| TATTATCAGTGGTGTTAGAT+TGG | 0.377415 | 3.4:+12162244 | None:intergenic |
| TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3.4:+12157384 | None:intergenic |
| CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3.4:+12161083 | None:intergenic |
| TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3.4:-12156896 | MS.gene85508:CDS |
| TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3.4:-12161114 | MS.gene85508:intron |
| TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3.4:-12157398 | MS.gene85508:CDS |
| TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3.4:+12162303 | None:intergenic |
| GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3.4:+12160350 | None:intergenic |
| GGAGGAATTGATGATATTGT+AGG | 0.453082 | 3.4:-12156843 | MS.gene85508:CDS |
| ATTATCAGTGGTGTTAGATT+GGG | 0.456103 | 3.4:+12162245 | None:intergenic |
| AAAATTATATTAGACGATGA+TGG | 0.457541 | 3.4:-12157676 | MS.gene85508:CDS |
| CACCCTCACCTCGTTTGTTG+AGG | 0.472935 | 3.4:-12157570 | MS.gene85508:CDS |
| ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3.4:-12161107 | MS.gene85508:CDS |
| AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3.4:+12160365 | None:intergenic |
| CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3.4:-12161083 | MS.gene85508:CDS |
| TACCGAGTTCCTTCAGAAGC+AGG | 0.503896 | 3.4:-12156870 | MS.gene85508:CDS |
| TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3.4:+12161106 | None:intergenic |
| GTTCCTTCAGAAGCAGGTAG+AGG | 0.536628 | 3.4:-12156864 | MS.gene85508:CDS |
| CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3.4:-12156897 | MS.gene85508:CDS |
| GAGGAATTGATGATATTGTA+GGG | 0.550926 | 3.4:-12156842 | MS.gene85508:CDS |
| AGCCTCAACAAACGAGGTGA+GGG | 0.559488 | 3.4:+12157568 | None:intergenic |
| AAGCCTCAACAAACGAGGTG+AGG | 0.569309 | 3.4:+12157567 | None:intergenic |
| CCTTCAGAAGCAGGTAGAGG+AGG | 0.578156 | 3.4:-12156861 | MS.gene85508:CDS |
| TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3.4:-12162163 | MS.gene85508:intron |
| CCTCCTCTACCTGCTTCTGA+AGG | 0.593895 | 3.4:+12156861 | None:intergenic |
| CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3.4:+12160338 | None:intergenic |
| TACCTGCTTCTGAAGGAACT+CGG | 0.615329 | 3.4:+12156868 | None:intergenic |
| TAACACCACTGATAATAGGA+TGG | 0.625981 | 3.4:-12162238 | MS.gene85508:CDS |
| CTCAACAAACGAGGTGAGGG+TGG | 0.629401 | 3.4:+12157571 | None:intergenic |
| TTAGATTGGGTAGAATCACC+AGG | 0.651677 | 3.4:+12162258 | None:intergenic |
| GATTGCTGAGTTCAATAACA+AGG | 0.657414 | 3.4:+12162202 | None:intergenic |
| GTAAGCCATCCTATTATCAG+TGG | 0.660180 | 3.4:+12162233 | None:intergenic |
| ATCAAAAGCCTCAACAAACG+AGG | 0.660997 | 3.4:+12157562 | None:intergenic |
| GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3.4:+12160337 | None:intergenic |
| TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3.4:+12160353 | None:intergenic |
| GTTGTTACATGAGAATGTTG+GGG | 0.725619 | 3.4:-12156895 | MS.gene85508:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACTCTATAATAATAAAT+TGG | + | chr3.4:12161367-12161386 | None:intergenic | 10.0% |
| !! | AGTTATAATAAATTAATTGT+CGG | - | chr3.4:12160252-12160271 | MS.gene85508:intron | 10.0% |
| !! | ATTAGTTAATAATAAATCAA+TGG | + | chr3.4:12161988-12162007 | None:intergenic | 10.0% |
| !! | ATTATATGAAAATTGATATT+AGG | - | chr3.4:12160404-12160423 | MS.gene85508:intron | 10.0% |
| !! | TACAAAAAAAAAAAATTACT+GGG | + | chr3.4:12159625-12159644 | None:intergenic | 10.0% |
| !!! | CATATATATTTTTTACATTA+AGG | + | chr3.4:12158976-12158995 | None:intergenic | 10.0% |
| !!! | TACAATAATATCTAATTTTA+GGG | + | chr3.4:12160306-12160325 | None:intergenic | 10.0% |
| !!! | TTAAAAGATATATATTTTAG+CGG | - | chr3.4:12160160-12160179 | MS.gene85508:intron | 10.0% |
| !!! | TTTTTATAATTGAATTGAAA+GGG | - | chr3.4:12157185-12157204 | MS.gene85508:intron | 10.0% |
| !!! | TTTTTTATAATTGAATTGAA+AGG | - | chr3.4:12157184-12157203 | MS.gene85508:intron | 10.0% |
| !!! | TTTTTTTTTTTTGTAGTTTT+TGG | - | chr3.4:12159630-12159649 | MS.gene85508:intron | 10.0% |
| !! | AAAATTGATATTAGGTATTT+GGG | - | chr3.4:12160412-12160431 | MS.gene85508:intron | 15.0% |
| !! | ATAGATTCATAATCTAAAAA+TGG | + | chr3.4:12158377-12158396 | None:intergenic | 15.0% |
| !! | ATTGAATTCTTTCTTTATAA+AGG | + | chr3.4:12162147-12162166 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAAAACTGTA+TGG | - | chr3.4:12160121-12160140 | MS.gene85508:intron | 15.0% |
| !! | CTACAAAAAAAAAAAATTAC+TGG | + | chr3.4:12159626-12159645 | None:intergenic | 15.0% |
| !! | CTTCAATAGAAATAATAAAT+AGG | + | chr3.4:12161187-12161206 | None:intergenic | 15.0% |
| !! | GAAACATAAAAACATAAATT+TGG | + | chr3.4:12158432-12158451 | None:intergenic | 15.0% |
| !! | GACAATTAATTTATTATAAC+TGG | + | chr3.4:12160253-12160272 | None:intergenic | 15.0% |
| !!! | ATATTTCTTTTTGTAGTTTT+TGG | + | chr3.4:12159829-12159848 | None:intergenic | 15.0% |
| !!! | CATACAGTTTTTTTTTTTTT+TGG | + | chr3.4:12160123-12160142 | None:intergenic | 15.0% |
| !!! | CTACAATAATATCTAATTTT+AGG | + | chr3.4:12160307-12160326 | None:intergenic | 15.0% |
| !!! | GAACTTTTATACTAAAATTT+CGG | - | chr3.4:12157940-12157959 | MS.gene85508:intron | 15.0% |
| !! | AAAAAACAAAGGCTAAAATA+TGG | + | chr3.4:12159897-12159916 | None:intergenic | 20.0% |
| !! | AAAATCACACTATCAAATTT+CGG | + | chr3.4:12157640-12157659 | None:intergenic | 20.0% |
| !! | AAAATTATATTAGACGATGA+TGG | - | chr3.4:12161463-12161482 | MS.gene85508:intron | 20.0% |
| !! | AGGAATGGATATAAATATAA+AGG | + | chr3.4:12159448-12159467 | None:intergenic | 20.0% |
| !! | GAAAATTGATATTAGGTATT+TGG | - | chr3.4:12160411-12160430 | MS.gene85508:intron | 20.0% |
| !! | TAATTGTTTCGTTATTGAAA+GGG | - | chr3.4:12157379-12157398 | MS.gene85508:CDS | 20.0% |
| !! | TATGGAGATATATAACTATT+TGG | - | chr3.4:12159218-12159237 | MS.gene85508:intron | 20.0% |
| !! | TTCACACAATAAACTAATTA+AGG | - | chr3.4:12160065-12160084 | MS.gene85508:intron | 20.0% |
| !!! | AAATATATTTTCACATTGCA+AGG | + | chr3.4:12159986-12160005 | None:intergenic | 20.0% |
| !!! | AAGCTTCTAAATTTTTTCAA+TGG | + | chr3.4:12157567-12157586 | None:intergenic | 20.0% |
| !!! | AATCTTGATTTTACCATAAA+TGG | + | chr3.4:12157716-12157735 | None:intergenic | 20.0% |
| !!! | AATTTAGTTTTTAAACCTCT+AGG | - | chr3.4:12158581-12158600 | MS.gene85508:intron | 20.0% |
| !!! | ATCAATTTTTGTTGAAAACT+TGG | - | chr3.4:12157518-12157537 | MS.gene85508:intron | 20.0% |
| !!! | ATGTTTTTTTTTATAGTGTG+TGG | - | chr3.4:12159024-12159043 | MS.gene85508:intron | 20.0% |
| !!! | ATTACATATTATTTTCTAGC+TGG | - | chr3.4:12158121-12158140 | MS.gene85508:intron | 20.0% |
| !!! | ATTGATTTTCATGTATTTTG+GGG | + | chr3.4:12158913-12158932 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAATATTTTGCA+GGG | - | chr3.4:12159802-12159821 | MS.gene85508:intron | 20.0% |
| !!! | CAATGTTAGTAAAAGTTTTA+AGG | + | chr3.4:12160224-12160243 | None:intergenic | 20.0% |
| !!! | CTTAAAACTTTTACTAACAT+TGG | - | chr3.4:12160222-12160241 | MS.gene85508:intron | 20.0% |
| !!! | GATAGTGTGATTTTTTTTAA+TGG | - | chr3.4:12157646-12157665 | MS.gene85508:CDS | 20.0% |
| !!! | GATTGATTTTCATGTATTTT+GGG | + | chr3.4:12158914-12158933 | None:intergenic | 20.0% |
| !!! | TATTTTGTTTTTGGAAATAG+TGG | - | chr3.4:12159767-12159786 | MS.gene85508:intron | 20.0% |
| !!! | TCAAAAACAAAATATTTTGC+AGG | - | chr3.4:12159801-12159820 | MS.gene85508:intron | 20.0% |
| !!! | TCATTTTTAATGTCTTTCAT+GGG | - | chr3.4:12157028-12157047 | MS.gene85508:intron | 20.0% |
| !!! | TCTGCAAAATATTTTGTTTT+TGG | - | chr3.4:12159758-12159777 | MS.gene85508:intron | 20.0% |
| !!! | TGATTGATTTTCATGTATTT+TGG | + | chr3.4:12158915-12158934 | None:intergenic | 20.0% |
| !!! | TTACCATGTTTGTTTTATTT+TGG | - | chr3.4:12157918-12157937 | MS.gene85508:intron | 20.0% |
| !!! | TTCATTTTTAATGTCTTTCA+TGG | - | chr3.4:12157027-12157046 | MS.gene85508:intron | 20.0% |
| !!! | TTTTGTTTTTGGCTAAAATA+TGG | - | chr3.4:12159562-12159581 | MS.gene85508:intron | 20.0% |
| !!! | TTTTTCAATTTTAATGCATC+TGG | - | chr3.4:12157495-12157514 | MS.gene85508:intron | 20.0% |
| ! | AAAAACAAAAGTTAGAAGGA+TGG | + | chr3.4:12159552-12159571 | None:intergenic | 25.0% |
| ! | AACTTCTTTCATCTTAAAAC+AGG | - | chr3.4:12161705-12161724 | MS.gene85508:intron | 25.0% |
| ! | AATTTGGAGAAAGATATACA+TGG | + | chr3.4:12158416-12158435 | None:intergenic | 25.0% |
| ! | ACGAAAAAAATTGATGAGAT+TGG | + | chr3.4:12161777-12161796 | None:intergenic | 25.0% |
| ! | ACTATGAAACACTAAAACAA+TGG | + | chr3.4:12160776-12160795 | None:intergenic | 25.0% |
| ! | ACTTAGAAAATATATGGTGA+TGG | - | chr3.4:12158469-12158488 | MS.gene85508:intron | 25.0% |
| ! | ACTTCTTTCATCTTAAAACA+GGG | - | chr3.4:12161706-12161725 | MS.gene85508:intron | 25.0% |
| ! | ATATTACAAGACATGCTATT+AGG | - | chr3.4:12161904-12161923 | MS.gene85508:intron | 25.0% |
| ! | ATATTTGATGAAACACACAA+TGG | - | chr3.4:12158285-12158304 | MS.gene85508:intron | 25.0% |
| ! | ATGAGAACAAAGATGTTATT+AGG | + | chr3.4:12157154-12157173 | None:intergenic | 25.0% |
| ! | CAAAACGAAATAAATAAGCA+TGG | + | chr3.4:12160566-12160585 | None:intergenic | 25.0% |
| ! | CTAATTGTTTCGTTATTGAA+AGG | - | chr3.4:12157378-12157397 | MS.gene85508:CDS | 25.0% |
| ! | CTAGATATTGTTTCAATTTC+AGG | - | chr3.4:12162193-12162212 | MS.gene85508:CDS | 25.0% |
| ! | CTATGAAACACTAAAACAAT+GGG | + | chr3.4:12160775-12160794 | None:intergenic | 25.0% |
| ! | CTTTCAATAACGAAACAATT+AGG | + | chr3.4:12157380-12157399 | None:intergenic | 25.0% |
| ! | GCTGCATATAATAACAAAAA+AGG | + | chr3.4:12159418-12159437 | None:intergenic | 25.0% |
| ! | GTTCCAAAATAAAACAAACA+TGG | + | chr3.4:12157924-12157943 | None:intergenic | 25.0% |
| ! | TAAGGATTCTCTAAACTTTA+TGG | - | chr3.4:12160083-12160102 | MS.gene85508:intron | 25.0% |
| ! | TATTACAAGACATGCTATTA+GGG | - | chr3.4:12161905-12161924 | MS.gene85508:intron | 25.0% |
| ! | TGTTTGTCTAATATGCAAAA+CGG | - | chr3.4:12161295-12161314 | MS.gene85508:intron | 25.0% |
| ! | TTATTCTGAATTACAATCCA+AGG | - | chr3.4:12159116-12159135 | MS.gene85508:intron | 25.0% |
| ! | TTCACAAGTAATACAAATCT+TGG | - | chr3.4:12157052-12157071 | MS.gene85508:intron | 25.0% |
| ! | TTTGTTGAAAACTTGGTATT+CGG | - | chr3.4:12157525-12157544 | MS.gene85508:intron | 25.0% |
| !! | ATTTTATGTGAACAAGAGAT+GGG | - | chr3.4:12160959-12160978 | MS.gene85508:intron | 25.0% |
| !! | CATTTATGGTATTTTCAAAG+TGG | - | chr3.4:12162058-12162077 | MS.gene85508:intron | 25.0% |
| !! | CTTTACTTTGACTTTAAATG+AGG | + | chr3.4:12157598-12157617 | None:intergenic | 25.0% |
| !! | GTTCTTTTGTGAAAATACTA+TGG | - | chr3.4:12159200-12159219 | MS.gene85508:intron | 25.0% |
| !! | TATTTTATGTGAACAAGAGA+TGG | - | chr3.4:12160958-12160977 | MS.gene85508:intron | 25.0% |
| !! | TGCTTATTTATTTCGTTTTG+TGG | - | chr3.4:12160566-12160585 | MS.gene85508:intron | 25.0% |
| !! | TTTAACCCTATGGATTTTAA+TGG | - | chr3.4:12161071-12161090 | MS.gene85508:CDS | 25.0% |
| !!! | AAATTTTTTCAATGGTACTC+CGG | + | chr3.4:12157559-12157578 | None:intergenic | 25.0% |
| !!! | AAGTTTTAAGGACAGTTATA+AGG | + | chr3.4:12160212-12160231 | None:intergenic | 25.0% |
| !!! | ATCCTTCTAACTTTTGTTTT+TGG | - | chr3.4:12159551-12159570 | MS.gene85508:intron | 25.0% |
| !!! | ATTGTCGGTAAAAGTTTTAA+CGG | - | chr3.4:12160267-12160286 | MS.gene85508:intron | 25.0% |
| !!! | CTTTCCCATTTTTAACATAA+TGG | + | chr3.4:12159353-12159372 | None:intergenic | 25.0% |
| !!! | GAAAAGTGTTTTGAATAAGA+GGG | - | chr3.4:12159278-12159297 | MS.gene85508:intron | 25.0% |
| !!! | TAAGTTTTGTGACACATTTA+TGG | - | chr3.4:12162044-12162063 | MS.gene85508:intron | 25.0% |
| !!! | TACTATTGCAGTATTTTTAC+AGG | - | chr3.4:12158079-12158098 | MS.gene85508:intron | 25.0% |
| !!! | TAGCTCAAGGATTTTTTTTA+GGG | - | chr3.4:12158538-12158557 | MS.gene85508:intron | 25.0% |
| !!! | TGAAAAGTGTTTTGAATAAG+AGG | - | chr3.4:12159277-12159296 | MS.gene85508:intron | 25.0% |
| !!! | TTAACCCTATGGATTTTAAT+GGG | - | chr3.4:12161072-12161091 | MS.gene85508:CDS | 25.0% |
| !!! | TTAACTTGCTTGTTGTTTTA+AGG | + | chr3.4:12159468-12159487 | None:intergenic | 25.0% |
| !!! | TTAGCTCAAGGATTTTTTTT+AGG | - | chr3.4:12158537-12158556 | MS.gene85508:intron | 25.0% |
| !!! | TTGATTTTCATGTATTTTGG+GGG | + | chr3.4:12158912-12158931 | None:intergenic | 25.0% |
| AACACAGTTTGAGAATTTGA+GGG | - | chr3.4:12159486-12159505 | MS.gene85508:intron | 30.0% | |
| AATCAAGATTATTATCGCAC+AGG | - | chr3.4:12157726-12157745 | MS.gene85508:intron | 30.0% | |
| AATCTAACACCACTGATAAT+AGG | - | chr3.4:12156897-12156916 | MS.gene85508:CDS | 30.0% | |
| ACAAAACGAGACATATTTAC+AGG | + | chr3.4:12159596-12159615 | None:intergenic | 30.0% | |
| ACAAGTAATACAAATCTTGG+AGG | - | chr3.4:12157055-12157074 | MS.gene85508:intron | 30.0% | |
| ACATGATGATTGAACCTATT+CGG | - | chr3.4:12159722-12159741 | MS.gene85508:intron | 30.0% | |
| AGAAATGAGACCTGATAATT+TGG | - | chr3.4:12157245-12157264 | MS.gene85508:intron | 30.0% | |
| AGATAGATATGTAAGAACCT+TGG | + | chr3.4:12156996-12157015 | None:intergenic | 30.0% | |
| AGCCAAAAACAAAAGTTAGA+AGG | + | chr3.4:12159556-12159575 | None:intergenic | 30.0% | |
| AGGGAGACTTAGAAAATATA+TGG | - | chr3.4:12158463-12158482 | MS.gene85508:intron | 30.0% | |
| AGTACAGTAATGACTATAGA+TGG | - | chr3.4:12160697-12160716 | MS.gene85508:intron | 30.0% | |
| ATAAGCCCATTAAAATCCAT+AGG | + | chr3.4:12161080-12161099 | None:intergenic | 30.0% | |
| ATGAAACACACAATGGTATT+GGG | - | chr3.4:12158292-12158311 | MS.gene85508:intron | 30.0% | |
| ATGAACTAATCCTAACAAGT+TGG | + | chr3.4:12160448-12160467 | None:intergenic | 30.0% | |
| ATGTTATTAGGTCTAGCAAA+AGG | + | chr3.4:12157142-12157161 | None:intergenic | 30.0% | |
| ATTATAAATGTTGCAACCTG+TGG | + | chr3.4:12161439-12161458 | None:intergenic | 30.0% | |
| CAAAACGAGACATATTTACA+GGG | + | chr3.4:12159595-12159614 | None:intergenic | 30.0% | |
| CAGGCCATTATGTTAAAAAT+GGG | - | chr3.4:12159346-12159365 | MS.gene85508:intron | 30.0% | |
| CCAACAGTATTCCATAATAA+AGG | + | chr3.4:12158059-12158078 | None:intergenic | 30.0% | |
| CCATCATTATCAAGAAAATG+AGG | - | chr3.4:12162320-12162339 | MS.gene85508:CDS | 30.0% | |
| CCTTTATTATGGAATACTGT+TGG | - | chr3.4:12158056-12158075 | MS.gene85508:intron | 30.0% | |
| CTGTACAGTAAAATACAACA+AGG | - | chr3.4:12161046-12161065 | MS.gene85508:intron | 30.0% | |
| GATATACAACTTTCATTAGC+AGG | + | chr3.4:12161415-12161434 | None:intergenic | 30.0% | |
| GATGAAGAAGAAGAAAAGAA+TGG | - | chr3.4:12161000-12161019 | MS.gene85508:intron | 30.0% | |
| TAACAACTTATCTTCCAAAC+AGG | - | chr3.4:12161741-12161760 | MS.gene85508:intron | 30.0% | |
| TAACACAGTTTGAGAATTTG+AGG | - | chr3.4:12159485-12159504 | MS.gene85508:intron | 30.0% | |
| TAAGCCCATTAAAATCCATA+GGG | + | chr3.4:12161079-12161098 | None:intergenic | 30.0% | |
| TCAAAGTGGATACTAACTAT+AGG | - | chr3.4:12162072-12162091 | MS.gene85508:intron | 30.0% | |
| TCAGCTGCATTAAAAAACAA+AGG | + | chr3.4:12159908-12159927 | None:intergenic | 30.0% | |
| TGAAATGATGATTGTTCTGA+AGG | + | chr3.4:12158354-12158373 | None:intergenic | 30.0% | |
| TGAACTAATCCTAACAAGTT+GGG | + | chr3.4:12160447-12160466 | None:intergenic | 30.0% | |
| TGTCACAAAACTTACTAAAG+AGG | + | chr3.4:12162038-12162057 | None:intergenic | 30.0% | |
| TGTTATTAGGTCTAGCAAAA+GGG | + | chr3.4:12157141-12157160 | None:intergenic | 30.0% | |
| TGTTGTTACATGAGAATGTT+GGG | - | chr3.4:12162243-12162262 | MS.gene85508:CDS | 30.0% | |
| TTCACTGTTTAGTGTATCAT+GGG | - | chr3.4:12157402-12157421 | MS.gene85508:CDS | 30.0% | |
| TTGAATAAGAGGGATGAATT+TGG | - | chr3.4:12159288-12159307 | MS.gene85508:intron | 30.0% | |
| TTGTGGTATTTGATATTCAC+AGG | - | chr3.4:12160583-12160602 | MS.gene85508:intron | 30.0% | |
| ! | AACGTTTGAAACAAGAGAAA+AGG | + | chr3.4:12161678-12161697 | None:intergenic | 30.0% |
| ! | ATTATCAGTGGTGTTAGATT+GGG | + | chr3.4:12156897-12156916 | None:intergenic | 30.0% |
| ! | GAGGAATTGATGATATTGTA+GGG | - | chr3.4:12162297-12162316 | MS.gene85508:CDS | 30.0% |
| ! | TATATTAGACGATGATGGTT+TGG | - | chr3.4:12161468-12161487 | MS.gene85508:intron | 30.0% |
| ! | TATGTTTCCAACTTTTACGA+GGG | - | chr3.4:12158444-12158463 | MS.gene85508:intron | 30.0% |
| ! | TATTATCAGTGGTGTTAGAT+TGG | + | chr3.4:12156898-12156917 | None:intergenic | 30.0% |
| ! | TCTCCAGAATAATTTGTCTT+TGG | - | chr3.4:12157332-12157351 | MS.gene85508:intron | 30.0% |
| ! | TTATGTTTCCAACTTTTACG+AGG | - | chr3.4:12158443-12158462 | MS.gene85508:intron | 30.0% |
| !! | AGACTATTTTTCTACCGAAT+AGG | + | chr3.4:12159739-12159758 | None:intergenic | 30.0% |
| !!! | AATATGTCTCGTTTTGGTTT+TGG | - | chr3.4:12159661-12159680 | MS.gene85508:intron | 30.0% |
| !!! | GCTACAACAGAGAATTTTTT+TGG | - | chr3.4:12161502-12161521 | MS.gene85508:intron | 30.0% |
| !!! | GTTGTGCTGTTTTTTTTTTC+AGG | - | chr3.4:12158734-12158753 | MS.gene85508:intron | 30.0% |
| !!! | TCTGAGATTTTTTTTAGGTG+TGG | + | chr3.4:12161220-12161239 | None:intergenic | 30.0% |
| !!! | TTGCTTGTTGTTTTAAGGAA+TGG | + | chr3.4:12159463-12159482 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGGAAATAGTGGA+GGG | - | chr3.4:12159771-12159790 | MS.gene85508:intron | 30.0% |
| !!! | TTTGTTTTTGGAAATAGTGG+AGG | - | chr3.4:12159770-12159789 | MS.gene85508:intron | 30.0% |
| AAAACTTGGTATTCGGTCAT+AGG | - | chr3.4:12157532-12157551 | MS.gene85508:CDS | 35.0% | |
| AAACCTATGACTTCTTTCAG+GGG | + | chr3.4:12161247-12161266 | None:intergenic | 35.0% | |
| AAAGAATCTCTGGTGTTCAT+AGG | - | chr3.4:12160740-12160759 | MS.gene85508:intron | 35.0% | |
| AACACACAGTAAAGAATCTC+TGG | - | chr3.4:12160730-12160749 | MS.gene85508:intron | 35.0% | |
| AAGAAAAGAATGGACATGTG+CGG | - | chr3.4:12161010-12161029 | MS.gene85508:intron | 35.0% | |
| AAGTTATTGCAACCAAAAGC+TGG | + | chr3.4:12159325-12159344 | None:intergenic | 35.0% | |
| ACAAGGATCTCATTTCTCAA+TGG | - | chr3.4:12159061-12159080 | MS.gene85508:intron | 35.0% | |
| ACCAAGTTATTTGAGGAACT+TGG | - | chr3.4:12158032-12158051 | MS.gene85508:intron | 35.0% | |
| AGAAACCTATGACTTCTTTC+AGG | + | chr3.4:12161249-12161268 | None:intergenic | 35.0% | |
| AGAAATGAGATCCTTGTATC+AGG | + | chr3.4:12159058-12159077 | None:intergenic | 35.0% | |
| AGGAACTTGGACCTTTATTA+TGG | - | chr3.4:12158045-12158064 | MS.gene85508:intron | 35.0% | |
| AGGACAGTTATAAGGAATGT+TGG | + | chr3.4:12160204-12160223 | None:intergenic | 35.0% | |
| AGGATGATCCAAAAACTATG+AGG | - | chr3.4:12162213-12162232 | MS.gene85508:CDS | 35.0% | |
| ATCACACTATCAAATTTCGG+TGG | + | chr3.4:12157637-12157656 | None:intergenic | 35.0% | |
| ATTCATAAGAGTCGCACTAA+TGG | + | chr3.4:12158644-12158663 | None:intergenic | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | - | chr3.4:12159864-12159883 | MS.gene85508:intron | 35.0% | |
| CAAAACGAGACATATTTGCA+GGG | + | chr3.4:12159883-12159864 | None:intergenic | 35.0% | |
| CAACTTTCATTAGCAGGTAT+TGG | + | chr3.4:12161409-12161428 | None:intergenic | 35.0% | |
| CCACCAAAGACAAATTATTC+TGG | + | chr3.4:12157338-12157357 | None:intergenic | 35.0% | |
| CTAGCAAAAGGGTTTAATGT+TGG | + | chr3.4:12157130-12157149 | None:intergenic | 35.0% | |
| CTGTTGTTACATGAGAATGT+TGG | - | chr3.4:12162242-12162261 | MS.gene85508:CDS | 35.0% | |
| CTTATCTCAAAATTGCAGGT+TGG | - | chr3.4:12161615-12161634 | MS.gene85508:intron | 35.0% | |
| GAAACCTATGACTTCTTTCA+GGG | + | chr3.4:12161248-12161267 | None:intergenic | 35.0% | |
| GAAATGAGATCCTTGTATCA+GGG | + | chr3.4:12159057-12159076 | None:intergenic | 35.0% | |
| GAAGGATTGTAATACGACAA+AGG | + | chr3.4:12158336-12158355 | None:intergenic | 35.0% | |
| GACGACATCTAATCCATTTA+TGG | - | chr3.4:12157700-12157719 | MS.gene85508:CDS | 35.0% | |
| GATGAAACACACAATGGTAT+TGG | - | chr3.4:12158291-12158310 | MS.gene85508:intron | 35.0% | |
| GATTGCTGAGTTCAATAACA+AGG | + | chr3.4:12156940-12156959 | None:intergenic | 35.0% | |
| GATTTGAACTTCTTTCCTAG+AGG | + | chr3.4:12158599-12158618 | None:intergenic | 35.0% | |
| GCAGGCCATTATGTTAAAAA+TGG | - | chr3.4:12159345-12159364 | MS.gene85508:intron | 35.0% | |
| GTATGATGCACACATTCAAT+AGG | + | chr3.4:12161949-12161968 | None:intergenic | 35.0% | |
| GTGCAAATCATCACAAAAGT+GGG | + | chr3.4:12159695-12159714 | None:intergenic | 35.0% | |
| GTTCACTGTTTAGTGTATCA+TGG | - | chr3.4:12157401-12157420 | MS.gene85508:CDS | 35.0% | |
| GTTGTTACATGAGAATGTTG+GGG | - | chr3.4:12162244-12162263 | MS.gene85508:CDS | 35.0% | |
| TAACACCACTGATAATAGGA+TGG | - | chr3.4:12156901-12156920 | MS.gene85508:CDS | 35.0% | |
| TAGTTCATCTACATCACGAA+GGG | - | chr3.4:12160460-12160479 | MS.gene85508:intron | 35.0% | |
| TCCAAGTTCCTCAAATAACT+TGG | + | chr3.4:12158036-12158055 | None:intergenic | 35.0% | |
| TGAAAGTTGTATATCTCCAC+AGG | - | chr3.4:12161420-12161439 | MS.gene85508:intron | 35.0% | |
| TGATCCAAAAACTATGAGGT+TGG | - | chr3.4:12162217-12162236 | MS.gene85508:CDS | 35.0% | |
| TGGAGAAAGATATACATGGT+AGG | + | chr3.4:12158412-12158431 | None:intergenic | 35.0% | |
| TGTGCAAATCATCACAAAAG+TGG | + | chr3.4:12159696-12159715 | None:intergenic | 35.0% | |
| TTAGTTCATCTACATCACGA+AGG | - | chr3.4:12160459-12160478 | MS.gene85508:intron | 35.0% | |
| TTGTGCATGTATCTTACTTG+TGG | - | chr3.4:12158244-12158263 | MS.gene85508:intron | 35.0% | |
| TTTCAAGAGATGTTAGCTCA+AGG | - | chr3.4:12158525-12158544 | MS.gene85508:intron | 35.0% | |
| ! | AAAGGGTTTAATGTTGGTAG+AGG | + | chr3.4:12157124-12157143 | None:intergenic | 35.0% |
| ! | ACAAATTATTCTGGAGAACC+TGG | + | chr3.4:12157329-12157348 | None:intergenic | 35.0% |
| ! | ACTTACAAACCCAACTTGTT+AGG | - | chr3.4:12160435-12160454 | MS.gene85508:intron | 35.0% |
| ! | AGTACCAACCTCATAGTTTT+TGG | + | chr3.4:12162224-12162243 | None:intergenic | 35.0% |
| ! | CAAATTATTCTGGAGAACCT+GGG | + | chr3.4:12157328-12157347 | None:intergenic | 35.0% |
| ! | CCAGAATAATTTGTCTTTGG+TGG | - | chr3.4:12157335-12157354 | MS.gene85508:intron | 35.0% |
| ! | GCTTCGATTTCTCTGTTTTA+TGG | - | chr3.4:12160908-12160927 | MS.gene85508:intron | 35.0% |
| ! | GGAGGAATTGATGATATTGT+AGG | - | chr3.4:12162296-12162315 | MS.gene85508:CDS | 35.0% |
| !! | CAACAAGGATTTTAACCCTA+TGG | - | chr3.4:12161061-12161080 | MS.gene85508:CDS | 35.0% |
| !! | CAACTTGTTACATACAACCT+TGG | + | chr3.4:12159136-12159155 | None:intergenic | 35.0% |
| !! | GCAGGTATTGGTAACAAAAA+TGG | + | chr3.4:12161397-12161416 | None:intergenic | 35.0% |
| !! | GGTCATTTTACAGTTGTTTG+AGG | + | chr3.4:12158623-12158642 | None:intergenic | 35.0% |
| !! | TTTTGGTTGCAATAACTTGC+AGG | - | chr3.4:12159327-12159346 | MS.gene85508:intron | 35.0% |
| !!! | AGAGCATTTTCTCTAAGATC+TGG | + | chr3.4:12156962-12156981 | None:intergenic | 35.0% |
| !!! | GCGGATCTGAGATTTTTTTT+AGG | + | chr3.4:12161225-12161244 | None:intergenic | 35.0% |
| !!! | TCGAGTTTTGAACATGATGT+TGG | - | chr3.4:12161531-12161550 | MS.gene85508:intron | 35.0% |
| AGAACCTGGGTTCAATTTCT+GGG | + | chr3.4:12157315-12157334 | None:intergenic | 40.0% | |
| AGGTTAACACCAAAGAAGCA+GGG | - | chr3.4:12160603-12160622 | MS.gene85508:intron | 40.0% | |
| ATCAAAAGCCTCAACAAACG+AGG | + | chr3.4:12161580-12161599 | None:intergenic | 40.0% | |
| CAATGTTCTTGCACTACTTC+AGG | - | chr3.4:12158824-12158843 | MS.gene85508:intron | 40.0% | |
| CAGACGAACTCCAAATTATC+AGG | + | chr3.4:12157258-12157277 | None:intergenic | 40.0% | |
| CCAAAACGAGACATATTTGC+AGG | - | chr3.4:12159863-12159882 | MS.gene85508:intron | 40.0% | |
| CCAAAACGAGACATATTTGC+AGG | + | chr3.4:12159882-12159863 | None:intergenic | 40.0% | |
| CTACTACTTGGGGAAAAATC+TGG | + | chr3.4:12160666-12160685 | None:intergenic | 40.0% | |
| CTCGCTTATCTCAAAATTGC+AGG | - | chr3.4:12161611-12161630 | MS.gene85508:intron | 40.0% | |
| GTAAGCCATCCTATTATCAG+TGG | + | chr3.4:12156909-12156928 | None:intergenic | 40.0% | |
| GTGTTTACGCTTCACTTCTT+AGG | - | chr3.4:12157222-12157241 | MS.gene85508:intron | 40.0% | |
| TAAGTCTCCCTCGTAAAAGT+TGG | + | chr3.4:12158454-12158473 | None:intergenic | 40.0% | |
| TACAAGACATGCTATTAGGG+TGG | - | chr3.4:12161908-12161927 | MS.gene85508:intron | 40.0% | |
| TTAGATTGGGTAGAATCACC+AGG | + | chr3.4:12156884-12156903 | None:intergenic | 40.0% | |
| TTCTTTGTTGAGAGCGATTG+AGG | + | chr3.4:12156839-12156858 | None:intergenic | 40.0% | |
| ! | AATTTGAGGGTTGCTAGTCT+TGG | - | chr3.4:12159499-12159518 | MS.gene85508:intron | 40.0% |
| ! | ACGAAACAATTAGGCTCTAG+TGG | + | chr3.4:12157371-12157390 | None:intergenic | 40.0% |
| ! | ATGCTATTAGGGTGGCTTTT+AGG | - | chr3.4:12161916-12161935 | MS.gene85508:intron | 40.0% |
| ! | CCTGCAAATATGTCTCGTTT+TGG | - | chr3.4:12159655-12159674 | MS.gene85508:intron | 40.0% |
| ! | CCTGCAAATATGTCTCGTTT+TGG | + | chr3.4:12159674-12159655 | None:intergenic | 40.0% |
| ! | CTCTGTTTTATGGAGCAAGA+TGG | - | chr3.4:12160918-12160937 | MS.gene85508:intron | 40.0% |
| ! | CTGATAATTTGGAGTTCGTC+TGG | - | chr3.4:12157256-12157275 | MS.gene85508:intron | 40.0% |
| ! | GATTCTCTATGACCAGCTTT+TGG | - | chr3.4:12159310-12159329 | MS.gene85508:intron | 40.0% |
| ! | GCATCGTTTATAGCTTTTCC+TGG | - | chr3.4:12156863-12156882 | MS.gene85508:CDS | 40.0% |
| ! | TAATTTGGAGTTCGTCTGGT+AGG | - | chr3.4:12157260-12157279 | MS.gene85508:intron | 40.0% |
| ! | TCAGAGCACCAAGTTATTTG+AGG | - | chr3.4:12158025-12158044 | MS.gene85508:intron | 40.0% |
| ! | TTTGTGATGATTTGCACACG+TGG | - | chr3.4:12159698-12159717 | MS.gene85508:intron | 40.0% |
| AAAAGAATGGACATGTGCGG+CGG | - | chr3.4:12161013-12161032 | MS.gene85508:intron | 45.0% | |
| ACTTGGGGAAAAATCTGGTG+TGG | + | chr3.4:12160661-12160680 | None:intergenic | 45.0% | |
| CAGGTTAACACCAAAGAAGC+AGG | - | chr3.4:12160602-12160621 | MS.gene85508:intron | 45.0% | |
| GAGAACCTGGGTTCAATTTC+TGG | + | chr3.4:12157316-12157335 | None:intergenic | 45.0% | |
| GATCTGTGTACAACATGGTG+TGG | - | chr3.4:12160629-12160648 | MS.gene85508:intron | 45.0% | |
| GATTGTGAGGGAGAGAGATT+CGG | + | chr3.4:12158792-12158811 | None:intergenic | 45.0% | |
| GGTTAACACCAAAGAAGCAG+GGG | - | chr3.4:12160604-12160623 | MS.gene85508:intron | 45.0% | |
| GTCATTACTGTACTCCCTCT+AGG | + | chr3.4:12160691-12160710 | None:intergenic | 45.0% | |
| GTGAACAAGAGATGGGTCAT+GGG | - | chr3.4:12160966-12160985 | MS.gene85508:intron | 45.0% | |
| TCATCACAAAAGTGGGACCA+AGG | + | chr3.4:12159688-12159707 | None:intergenic | 45.0% | |
| TGTGAACAAGAGATGGGTCA+TGG | - | chr3.4:12160965-12160984 | MS.gene85508:intron | 45.0% | |
| TTGGCATCTTTGAGCCTGTT+TGG | + | chr3.4:12161758-12161777 | None:intergenic | 45.0% | |
| TTGGTATTCGGTCATAGGAC+CGG | - | chr3.4:12157537-12157556 | MS.gene85508:CDS | 45.0% | |
| ! | TACCTGCTTCTGAAGGAACT+CGG | + | chr3.4:12162274-12162293 | None:intergenic | 45.0% |
| !! | AGATTCGGTGGTGAAAGAGT+AGG | + | chr3.4:12158777-12158796 | None:intergenic | 45.0% |
| !! | CACACTCGAGTTGATTGTGA+GGG | + | chr3.4:12158804-12158823 | None:intergenic | 45.0% |
| !! | GTTGCTAGTCTTGGAGTCAT+TGG | - | chr3.4:12159508-12159527 | MS.gene85508:intron | 45.0% |
| !!! | CTCGTTTTGGTTTTGGTCCT+TGG | - | chr3.4:12159668-12159687 | MS.gene85508:intron | 45.0% |
| !! | ATATTAAATTATATCATATT+AGG | + | chr3.4:12161854-12161873 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTTTTTTGTTTA+AGG | - | chr3.4:12158662-12158681 | MS.gene85508:intron | 5.0% |
| AAGCCTCAACAAACGAGGTG+AGG | + | chr3.4:12161575-12161594 | None:intergenic | 50.0% | |
| AGCCTCAACAAACGAGGTGA+GGG | + | chr3.4:12161574-12161593 | None:intergenic | 50.0% | |
| CCCAAGTAGTAGAGCCTAGA+GGG | - | chr3.4:12160674-12160693 | MS.gene85508:intron | 50.0% | |
| CCCTCTAGGCTCTACTACTT+GGG | + | chr3.4:12160677-12160696 | None:intergenic | 50.0% | |
| CCTATGACTTCTTTCAGGGG+CGG | + | chr3.4:12161244-12161263 | None:intergenic | 50.0% | |
| CCTCTAGGCTCTACTACTTG+GGG | + | chr3.4:12160676-12160695 | None:intergenic | 50.0% | |
| GTTCCTTCAGAAGCAGGTAG+AGG | - | chr3.4:12162275-12162294 | MS.gene85508:CDS | 50.0% | |
| TAACACCAAAGAAGCAGGGG+CGG | - | chr3.4:12160607-12160626 | MS.gene85508:intron | 50.0% | |
| TACCGAGTTCCTTCAGAAGC+AGG | - | chr3.4:12162269-12162288 | MS.gene85508:CDS | 50.0% | |
| TCCACCCAGAAATTGAACCC+AGG | - | chr3.4:12157308-12157327 | MS.gene85508:intron | 50.0% | |
| TCCCTCTAGGCTCTACTACT+TGG | + | chr3.4:12160678-12160697 | None:intergenic | 50.0% | |
| TGCTCTCTATGTGCTCTCCA+AGG | - | chr3.4:12156976-12156995 | MS.gene85508:intron | 50.0% | |
| TGGCATCTCACCCTGATACA+AGG | - | chr3.4:12159044-12159063 | MS.gene85508:intron | 50.0% | |
| ! | ACCTGGGTTCAATTTCTGGG+TGG | + | chr3.4:12157312-12157331 | None:intergenic | 50.0% |
| ! | AGTCATTGGTGGCTCGATGA+AGG | - | chr3.4:12159522-12159541 | MS.gene85508:intron | 50.0% |
| !! | GCACACTCGAGTTGATTGTG+AGG | + | chr3.4:12158805-12158824 | None:intergenic | 50.0% |
| !! | GCTAGTCTTGGAGTCATTGG+TGG | - | chr3.4:12159511-12159530 | MS.gene85508:intron | 50.0% |
| CCCCAAGTAGTAGAGCCTAG+AGG | - | chr3.4:12160673-12160692 | MS.gene85508:intron | 55.0% | |
| CCGCCCCTGAAAGAAGTCAT+AGG | - | chr3.4:12161241-12161260 | MS.gene85508:intron | 55.0% | |
| CCTCCTCTACCTGCTTCTGA+AGG | + | chr3.4:12162281-12162300 | None:intergenic | 55.0% | |
| CCTTCAGAAGCAGGTAGAGG+AGG | - | chr3.4:12162278-12162297 | MS.gene85508:CDS | 55.0% | |
| CTCAACAAACGAGGTGAGGG+TGG | + | chr3.4:12161571-12161590 | None:intergenic | 55.0% | |
| GGGCGGATCTGTGTACAACA+TGG | - | chr3.4:12160624-12160643 | MS.gene85508:intron | 55.0% | |
| TGTGAGGGAGAGAGATTCGG+TGG | + | chr3.4:12158789-12158808 | None:intergenic | 55.0% | |
| ! | CACCCTCACCTCGTTTGTTG+AGG | - | chr3.4:12161569-12161588 | MS.gene85508:intron | 55.0% |
| ATGGACATGTGCGGCGGCTA+TGG | - | chr3.4:12161019-12161038 | MS.gene85508:intron | 60.0% | |
| CAGATCCGCCCCTGCTTCTT+TGG | + | chr3.4:12160615-12160634 | None:intergenic | 60.0% | |
| TGGACATGTGCGGCGGCTAT+GGG | - | chr3.4:12161020-12161039 | MS.gene85508:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12156821 | 12162340 | 12156821 | ID=MS.gene85508 |
| chr3.4 | mRNA | 12156821 | 12162340 | 12156821 | ID=MS.gene85508.t1;Parent=MS.gene85508 |
| chr3.4 | exon | 12162164 | 12162340 | 12162164 | ID=MS.gene85508.t1.exon1;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12162164 | 12162340 | 12162164 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| chr3.4 | exon | 12161061 | 12161132 | 12161061 | ID=MS.gene85508.t1.exon2;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12161061 | 12161132 | 12161061 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| chr3.4 | exon | 12160316 | 12160405 | 12160316 | ID=MS.gene85508.t1.exon3;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12160316 | 12160405 | 12160316 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| chr3.4 | exon | 12157529 | 12157719 | 12157529 | ID=MS.gene85508.t1.exon4;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12157529 | 12157719 | 12157529 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| chr3.4 | exon | 12157365 | 12157434 | 12157365 | ID=MS.gene85508.t1.exon5;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12157365 | 12157434 | 12157365 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| chr3.4 | exon | 12156821 | 12156946 | 12156821 | ID=MS.gene85508.t1.exon6;Parent=MS.gene85508.t1 |
| chr3.4 | CDS | 12156821 | 12156946 | 12156821 | ID=cds.MS.gene85508.t1;Parent=MS.gene85508.t1 |
| Gene Sequence |
| Protein sequence |
